These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11003#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 965 fasta sequence [GCGAGCTAGCTGCTTCTACAACTGTGCAGGTAGCTAATTAATCTAGCAATCCTCCCGTAGATTGGAATAATGGCAGATCAGAAGGTGATTCTCGCCGAGCCGCTGCTTCCGGGGAAGGAAGCTGACTTCGCCGACGACGACGACGTGGAGGCGCA-CTCACTTCGTACCACACCGGCGCCTCCTTCTCCAGGACGTGCCTCAACCTCACCAATGCCGTCTCCGGCATCGGGGTGCTGTCCATGCCGTACGCGGTGTCGCAGGGCGGGTGGCTCAGCCTGCTGCTCTTCGTCCTCGTCGGCGCCGTGTGCTACTACACCGGCACGCTCATCGAGCGCTGCATGCGCGCCGACGGCTCCATCGCCAGCTACCCGGACATC-GGCCA-GTACGCCTTCGGGGCCACCGGCAGGAGAGCCGTCGCATTCTTCATGTACGTCGAGCTCT-ACCTCGTCGCCATAAGCTTCCTCGTCCTCGA-GGGCGACAATCTCGACAAGCTCTTCCCCGGCGC-AACCATGGAGATTCTTGGCTA-CCAGC-TCCAC-GGCAAGCAGCTATTCATTGTCTCGCCGCCGCCGCATACTGCCACTACTTGCTCAAAANTTTGCATGCTTGCTACGTGTAGCGGCCGGCTCATCGCTCGTGGCCTGGACGCGTCCTATATTGGGCGTGTGCCAGACCGGTCCAACGACAGAACCTTAACTTCCGAATCCACCTCTTGGTTTATTGGTGTTACCGGCACCGTTCCACGTTATTCTCTAAAACGAACTTTTCAATCTGTGTCTTGCTGGCCTAATCGGCACGGGGTGGTAATATAGGATTGGCNGGACTACTCTCGACTACAAACTATAACTGACCTGAACCTTTGGCTCAGGTGGAATTTTGAGGGGCAAGTATACTGACACCTACCCGATCTAGGATAGTATTTCTCTAATCATGAAAAAGAGTAATATTACAGTTTACTATACCTACNN] [+] EMBL AU056548 [GCGAGCTAGCTGCTTCTACAACTGTGCAGGTAGCTAATTAATCTAGCAATCCTCCCGTAGATTGGAATAATGGCAGATCAGAAGGTGATTCTCGCCGAGCCGCTGCTTCCGGGGAAGGAAGCTGACTTCGCCGACGACGACGACGTGGAGGCGCA CTCACTTCGTACCACACCGGCGCCTCCTTCTCCAGGACGTGCCTCAACCTCACCAATGCCGTCTCCGGCATCGGGGTGCTGTCCATGCCGTACGCGGTGTCGCAGGGCGGGTGGCTCAGCCTGCTGCTCTTCGTCCTCGTCGGCGCCGTGTGCTACTACACCGGCACGCTCATCGAGCGCTGCATGCGCGCCGACGGCTCCATCGCCAGCTACCCGGACATC GGCCANNTACGCCTTCGGGGCCACCGGCAGGAGAGCCGTCGCATTCTTCATGTACGTCGAGCTCT ACCTCGTCGCCATAAGCTTCCTCGTCCTCGA GGGCGACAATCTCGACAAGCTCTTCCCCGGCGC AACCATGGAGATTCTTGGCTA CCAGC TCCAC GGCAAGCAGCTATTCATT ] [+] EMBL AW155174 [ AGCTAGCTGCTTCTACAACTGTGCAGGTAGCTAATTAATCTAGCAATCCTCCCGTAGATTGGAATAATGGCAGATCAGAAGGTGATTCTCGCCGAGCCGCTGCTTCCGGGGAAGGAAGCTGACTTCGCCGACGACGACGACGTGGAGGCGCAGCTCACTTCGTACCACACCGGCGCCTCCTTCTCCAGGACGTGCCTCAACCTCACCAATGCCGTCTCCGGCATCGGGGTGCTGTCCATGCCGTACGCGGTGTCGCAGGGCGGGTGGCTCAGCCTGCTGCTCTTCGTCCTCGTCGGCGCCGTGTGCTACTACACCGGCACGCTCATCGAGCGCTGCATGCGCGCCGACGGCTCCATCGCCAGCTACCCGGACATC GGCCA GTACGCCTTCGGCGCCACCGGCAGGAGAGCCGTCGCATTCTTCATGTACGTCGAGCTCT ACCTCGTCGCCATAAGCTTNCTCGTCCTCGAGGGGCGAC ATCTCGACNAGCTCTTNCNCGGCGC CACCATGGAGATTCTTGGCTACCCAGC T CAC NGCAAGCAGCTATTCATTGTCTCGCCGCCGCCGCATACTGCCACTACTTGCTCAAAANTTTGCATGCTTGCTACGTGTAGCGGCCGGCTCATCGCTCGTGGCCTGGACGCGTCCTATATTGGGCGTGTGCCAGACCGGTCCAACGACAGAACCTTAACTTCCGAATCCACCTCTTGGTTTATTGGTGTTACCGGCACCGTTCCACGTTATTCTCTAAAACGAACTTTTCAATCTGTGTCTTGCTGGCCTAATCGGCACGGGGTGGTAATATAGGATTGGCNGGACTACTCTCGACTACAAACTATAACTGACCTGAACCTTTGGCTCAGGTGGAATTTTGAGGGGCAAGTATACTGACACCTACCCGATCTAGGATAGTATTTCTCTAATCATGAAAAAGAGTAATATTACAGTTTACTATACCTACNN] [+] EMBL AU056135 [ CTGCTTCTACAACTGTGCAGGTAGCTAATTAATCTAGCAATCCTCCCGTAGATTGGAATAATGGCAGATCAGAAGGTGATTCTCGCCGAGCCGCTGCTTCCGGGGAAGGAAGCTGACTTCGCCGACGACGACGACGTGGAGGCGCA CTCACTTCGTACCACACCGGCGCCTCCTTCTCCAGGACGTGCCTCAACCTCACCAATGCCGTCTCCGGCATCGGGGTGCTGTCCATGCCGTACGCGGTGTCGCAGGGCGGGTGGCTCAGCCTGCTGCTCTTCGTCCTCGTCGGCGCCGTGTGCTACTACACCGGCACGCTCATCGAGCGCTGCATGCGCGCCGACGGCTCCATCGCCAGCTACCCGGACATCGGGCCA GTACGCCTTCGGGGCCACCGGCA GAGAGCCGTCGCATTCTTCATGTACGTCGAGCTCTNACCTCGTCGCCATAAGCTTCCTCGTCCTNGA GGGCGACAATCTCGACAAGCTCTTCCCCGGCGCAAANCATGGAGATTCTTGGCTA CCAGCTTCCACGGGCAAGCAGCTATTtca ] [+] EMBL AU056798 [ CTAGCAATCCTCCCGTAGATTGGAATAATGGCAGATCAGAAGGTGATTCTCGCCGAGCCGCTGCTTCCGGGGAAGGAAGCTGACTTCGCCGACGACGACGACGTGGAGGCGCA CTCACTTCGTACCACACCGGCGCCTCCTTCTCCAGGACGTGCCTCAACCTCACCAATGCCGTCTCCGGCATCGGGGTGCTGTCCATGCCGTACGCGGTGTCGCAGGGCGGGTGGCTCAGCCTGCTGCTCTTCGTCCTCGTCGGCGCCGTGTGCTACTACACCGGCACGCTCATCGAGCGCTGCATGCGCGCCGACGGCTCCATCGCCAGCTACCCGGACATC GGCCA GT ] consensusID : consensus_11003#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 917 fasta sequence [AGCTAGCTGCTTCTACAACTGTGCAGGTAGCTAATTAATCTAGCAATCCTCCCGTAGATTGGAATAATGGCAGATCAGAAGGTGATTCTCGCCGAGCCGCTGCTTCCGGGGAAGGAAGCTGACTTCGCCGACGACGACGACGTGGAGGCGCAGCTCACTTCGTACCACACCGGCGCCTCCTTCTCCAGGACGTGCCTCAACCTCACCAATGCCGTCTCCGGCATCGGGGTGCTGTCCATGCCGTACGCGGTGTCGCAGGGCGGGTGGCTCAGCCTGCTGCTCTTCGTCCTCGTCGGCGCCGTGTGCTACTACACCGGCACGCTCATCGAGCGCTGCATGCGCGCCGACGGCTCCATCGNCAGCTACCCGGACATCGGCCAGTACGCCTTCNGCGCCACCGGCAGGAGAGCCGTCGCATTCTTTCATGTCGTCGAGCTCTACCCTCGTCGCATAANGCTTCTCGTCCTCGAGGGCGACAATCTCGACAAGCTCTTCCCCGGNGCACCCATGGAGATTCTGGCTACCAGCTCAGGCAAGCAGCTTATCATTGTACTCGCCGNCCGCGCATACTTGCCACTACCTGGCTCAGAATCTTGCATGCGCTCCCTACTGTANNCGGCCGGTTATATNCCTGNGGGCTCTTAGCGTGACTGATATGTGGGCGTGTCCCAAAACCGTTCANNCAGACAGAACACGTAACTCTTCCGAGTACCCCAACCTCGTNGCTATATGNTGTGTTCCGCGCCCGCTTTCCAGATACCTTCCTGAAAAACGAACTTTTCAAAACTTTGTTATTTGTTTGGTCCGCGGGCCACAACGGGGGTGAGGGGTATAATAGAAGAGAAGACCGTCTGCATACCTCTACCCTATCCTACAAAATATGANTGGGGGTTAGCGCCGCAAGATTTCTCGGCCGA] [+] EMBL AW155226 [AGCTAGCTGCTTCTACAACTGTGCAGGTAGCTAATTAATCTAGCAATCCTCCCGTAGATTGGAATAATGGCAGATCAGAAGGTGATTCTCGCCGAGCCGCTGCTTCCGGGGAAGGAAGCTGACTTCGCCGACGACGACGACGTGGAGGCGCAGCTCACTTCGTACCACACCGGCGCCTCCTTCTCCAGGACGTGCCTCAACCTCACCAATGCCGTCTCCGGCATCGGGGTGCTGTCCATGCCGTACGCGGTGTCGCAGGGCGGGTGGCTCAGCCTGCTGCTCTTCGTCCTCGTCGGCGCCGTGTGCTACTACACCGGCACGCTCATCGAGCGCTGCATGCGCGCCGACGGCTCCATCGNCAGCTACCCGGACATCGGCCAGTACGCCTTCNGCGCCACCGGCAGGAGAGCCGTCGCATTCTTTCATGTCGTCGAGCTCTACCCTCGTCGCATAANGCTTCTCGTCCTCGAGGGCGACAATCTCGACAAGCTCTTCCCCGGNGCACCCATGGAGATTCTGGCTACCAGCTCAGGCAAGCAGCTTATCATTGTACTCGCCGNCCGCGCATACTTGCCACTACCTGGCTCAGAATCTTGCATGCGCTCCCTACTGTANNCGGCCGGTTATATNCCTGNGGGCTCTTAGCGTGACTGATATGTGGGCGTGTCCCAAAACCGTTCANNCAGACAGAACACGTAACTCTTCCGAGTACCCCAACCTCGTNGCTATATGNTGTGTTCCGCGCCCGCTTTCCAGATACCTTCCTGAAAAACGAACTTTTCAAAACTTTGTTATTTGTTTGGTCCGCGGGCCACAACGGGGGTGAGGGGTATAATAGAAGAGAAGACCGTCTGCATACCTCTACCCTATCCTACAAAATATGANTGGGGGTTAGCGCCGCAAGATTTCTCGGCCGA] consensusID : consensus_11003#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 560 fasta sequence [GGCGCCGTGTGCTACTACACCGGCACGCTCATCGAGCGCTGCATGCGCGCCGACGGCTCCATCGCCAGCTACCCGGACATCGGCCAGTACGCCTTCGGCGCCACCGGCAGGAGAGCCGTCGCATTCTTCATGTACGTCGAGCTCTACCTCGTCGCCATAAGCTTCCTCGTCCTCGAGGGCGACAATCTCGACAAGCTCTTCCCCGGCGCAACCATGGAGATTCTTGGCTACCAGCTCCACGGCAAGCAGCTATTCATTGTACTCGCCGCCGCCGTCATACTGCCCACTACCTGGCTCAAGAATCTTGGCATGCTCGCTT-ACGTGTCAGC-GGCC-GGGCTCATC-GCCTCGGTGGCCTTGACGGCGTCACTGATCTGGGCCGGT-GTCGCCGAGACCGGGTTCCACCGGAACAGCAACACGCTCAACCTCGCCGGAATCCCCACCTCCCTCGGTCTCTACTTTGTCTGCTTCACCGGCCACGCCGTCTTCCCGACGATATACTCCTCCATTAAAAACAACAAACACTTCTCCAAAGTTCTCTTGATCTCATCGGTGCTGTGCAA] [+] EMBL AU197745 [GGCGCCGTGTGCTACTACACCGGCACGCTCATCGAGCGCTGCATGCGCGCCGACGGCTCCATCGCCAGCTACCCGGACATCGGCCAGTACGCCTTCGGCGCCACCGGCAGGAGAGCCGTCGCATTCTTCATGTACGTCGAGCTCTACCTCGTCGCCATAAGCTTCCTCGTCCTCGAGGGCGACAATCTCGACAAGCTCTTCCCCGGCGCAACCATGGAGATTCTTGGCTACCAGCTCCACGGCAAGCAGCTATTCATTGTACTCGCCGCCGCCGTCATACTGCCCACTACCTGGCTCAAGAATCTTGGCATGCTCGCTT ACGTGTCAGC GGCC GGGCTCATC GCCTCGGTGGCCTTGACGGCGTCACTGATCTGGGCCGGT GTCGCCGAGACCGGGTTCCACCGGAACAGCAACACGCTCAACCTCGCCGGAATCCCCACCTCCC ] [+] EMBL AU056923 [ GCGCCGTGTGCTACTACACCGGCACGCTCATCGAGCGCTGCATGCGCGCCGACGGCTCCATCGCCAGCTACCCGGACATCGGCCAGTACGCCTTCGG GCCACCGGCAGGAGAGCCGTCGCATTCTTCATGTACGTCGAGCTCTACCTCGTCGCCATAAGCTTCCTCGTCCTCGAGGGCGACAATCTCGACAAGCTCTTCCCCGGCGCAACCATGGAGATTCTTGGCTACCAGCTCCACGGCAAGCAGCTATTCATTGTANTCGCCGCCGCCGTCATACTGCCCACTACCTGGCTCAAGAATCTTGGCATGCTCGCTTAACGTGTNAGCGGGCCGGGGCTCATCNGCCTtc ] [+] EMBL BF889462 [ TACCTGGCTCAATAATCTTGGCATGCTCGCTT ACGTGTCAGC GGCC GGGCTCATC GCCTCGGTGGCCTTGACGGCGTCACTTATCTAAACCGGTGGTCGCCGAGACCGGGTTCCACCGGAACAGCAACACACTCAACCTCGCCGGAATCCCCACCTCCCTCGGTCTCTACTTTGTCTGCTTCACCGGCCACGCCGTCTTCCCGACGATATACTCCTCCATTAAAAACAACAAACACTTCTCCAAAGTTCTCTTGATCTCATCGGTGCTGTGCAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_11003#0 GCGAGCTAGCTGCTTCTACAACTGTGCAGGTAGCTAATTAATCTAGCAATCCTCCCGTAG 60 consensus_11003#1 ---AGCTAGCTGCTTCTACAACTGTGCAGGTAGCTAATTAATCTAGCAATCCTCCCGTAG 57 consensus_11003#2 ------------------------------------------------------------ consensus_11003#0 ATTGGAATAATGGCAGATCAGAAGGTGATTCTCGCCGAGCCGCTGCTTCCGGGGAAGGAA 120 consensus_11003#1 ATTGGAATAATGGCAGATCAGAAGGTGATTCTCGCCGAGCCGCTGCTTCCGGGGAAGGAA 117 consensus_11003#2 ------------------------------------------------------------ consensus_11003#0 GCTGACTTCGCCGACGACGACGACGTGGAGGCGCA-CTCACTTCGTACCACACCGGCGCC 179 consensus_11003#1 GCTGACTTCGCCGACGACGACGACGTGGAGGCGCAGCTCACTTCGTACCACACCGGCGCC 177 consensus_11003#2 ------------------------------------------------------------ consensus_11003#0 TCCTTCTCCAGGACGTGCCTCAACCTCACCAATGCCGTCTCCGGCATCGGGGTGCTGTCC 239 consensus_11003#1 TCCTTCTCCAGGACGTGCCTCAACCTCACCAATGCCGTCTCCGGCATCGGGGTGCTGTCC 237 consensus_11003#2 ------------------------------------------------------------ consensus_11003#0 ATGCCGTACGCGGTGTCGCAGGGCGGGTGGCTCAGCCTGCTGCTCTTCGTCCTCGTCGGC 299 consensus_11003#1 ATGCCGTACGCGGTGTCGCAGGGCGGGTGGCTCAGCCTGCTGCTCTTCGTCCTCGTCGGC 297 consensus_11003#2 ---------------------------------------------------------GGC 3 *** consensus_11003#0 GCCGTGTGCTACTACACCGGCACGCTCATCGAGCGCTGCATGCGCGCCGACGGCTCCATC 359 consensus_11003#1 GCCGTGTGCTACTACACCGGCACGCTCATCGAGCGCTGCATGCGCGCCGACGGCTCCATC 357 consensus_11003#2 GCCGTGTGCTACTACACCGGCACGCTCATCGAGCGCTGCATGCGCGCCGACGGCTCCATC 63 ************************************************************ consensus_11003#0 GCCAGCTACCCGGACATCGGCCAGTACGCCTTCGGGGCCACCGGCAGGAGAGCCGTCGCA 419 consensus_11003#1 GNCAGCTACCCGGACATCGGCCAGTACGCCTTCNGCGCCACCGGCAGGAGAGCCGTCGCA 417 consensus_11003#2 GCCAGCTACCCGGACATCGGCCAGTACGCCTTCGGCGCCACCGGCAGGAGAGCCGTCGCA 123 * ******************************* * ************************ consensus_11003#0 TTCTT-CATGTACGTCGAGCTCTACC-TCGTCGCCATAAGCTTCCTCGTCCTCGAGGGCG 477 consensus_11003#1 TTCTTTCATGT-CGTCGAGCTCTACCCTCGTCGC-ATAANGCTTCTCGTCCTCGAGGGCG 475 consensus_11003#2 TTCTT-CATGTACGTCGAGCTCTACC-TCGTCGCCATAAGCTTCCTCGTCCTCGAGGGCG 181 ***** ***** ************** ******* **** * **************** consensus_11003#0 ACAATCTCGACAAGCTCTTCCCCGGCGCAACCATGGAGATTCTTGGCTACCAGCTCCACG 537 consensus_11003#1 ACAATCTCGACAAGCTCTTCCCCGGNGCACCCATGGAGATTCT-GGCTACCAGCTCA--G 532 consensus_11003#2 ACAATCTCGACAAGCTCTTCCCCGGCGCAACCATGGAGATTCTTGGCTACCAGCTCCACG 241 ************************* *** ************* ************ * consensus_11003#0 GCAAGCAGCTATTCATTGT-CTCGCCGCCGCCG-CATACT-GCCACTACTTG-CTCAAAA 593 consensus_11003#1 GCAAGCAGCTTATCATTGTACTCGCCGNCCGCG-CATACTTGCCACTACCTGGCTCAGAA 591 consensus_11003#2 GCAAGCAGCTATTCATTGTACTCGCCGCCGCCGTCATACTGCCCACTACCTGGCTCAAGA 301 ********** ******* ******* * ** ****** ******* ** **** * consensus_11003#0 NTTT--GCATGC--TTGCTACGTGT-AGCGGCCGG-CTCATCGCTCGTGG--CCTGGACG 645 consensus_11003#1 TCTT--GCATGCGCTCCCTACTGTA-NNCGGCCGG-TTATATNCCTGNGGGCTCTTAGCG 647 consensus_11003#2 ATCTTGGCATGC-TCGCTTACGTGTCAGCGGCCGGGCTCATCGCCTCGGTGGCCTTGACG 360 * ****** *** ******* * * * ** ** consensus_11003#0 -CGTCCTATAT-TGGGCGTGTGCC----AGACCGG--TCCAAC--GACAGAA---C-CTT 691 consensus_11003#1 -TGACTGATATGTGGGCGTGTCCC----AAAACCG--TTCANNCAGACAGAA---CACGT 697 consensus_11003#2 GCGTCACTGATCTGGGCCGGTGTCGCCGAGACCGGGTTCCACCGGAACAGCAACACGCTC 420 * * ** ***** ** * * * * * * ** **** * * * consensus_11003#0 AACT--TCCGAATCC----ACCTCTTGGTTTATTGGTGTTACCGGCACCG---TTCCACG 742 consensus_11003#1 AACTCTTCCGAGTACCCCAACCTCGTNGCTATATGNTGTGTTCCGCGCCCGCTTTCCAGA 757 consensus_11003#2 AACCTCGCCGGAATCCCCACCTCCCTCGGTCTCTACT-TTGTCTGCTTCA-CCGGCCACG 478 *** *** * * * * * * * * * * ** * *** consensus_11003#0 TTATTCTCT--AAAACGAACTTTTC-----AATCTGTGTCTTGCTGGCCTAATCGGCACG 795 consensus_11003#1 TACCTTCCTGAAAAACGAACTTTTC-----AAAAC-TTTGTTATTTGTTTGGTCCGC--- 808 consensus_11003#2 CCGTCTTCCCGACGATATACTCCTCCATTAAAAACAACAAACACTTCTCCAAAGTTCTCT 538 * * * *** ** ** * * consensus_11003#0 GGGTGGTAATATAGGATTGGCNGGACTACTCTCGACTACAAACTATAACTGACCTGAACC 855 consensus_11003#1 GGGCCACAAC--GGGGGTGAGGGGTATAATAGAAGAGAAGACCGTCTGCATACCTCTACC 866 consensus_11003#2 TGATCTCATC--GGTGCTGTGCAA------------------------------------ 560 * * * ** consensus_11003#0 TTTGGCTCAGGTGGAATTTTGAGGGGCAAGTATACTGACACCTACCCGATCTAGGATAGT 915 consensus_11003#1 CT-ATCCTACAAAATATGANTGGGGGTTAGCGCCGCAAGATTT-CTCGGCCGA------- 917 consensus_11003#2 ------------------------------------------------------------ consensus_11003#0 ATTTCTCTAATCATGAAAAAGAGTAATATTACAGTTTACTATACCTACNN 965 consensus_11003#1 -------------------------------------------------- consensus_11003#2 -------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||