cluster # 11005

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 11005 cluster # 11005 Sequences # 8 consensus # 5

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_11005#0 length = 667 sequences # 2
consensus_11005#1 length = 579 sequences # 3

consensus_11005#2 length = 250 sequences # 1
consensus_11005#3 length = 192 sequences # 1
consensus_11005#4 length = 181 sequences # 1

consensusID : consensus_11005#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 667
fasta sequence

                              [AGATNNCGAGCGGCCGCCGCCGACCCCACTTGGAAGTTGCAAAGCGAAGCCACCAACCTCAAAAACCCAAACCCTAGCTCTCCTCGCCGCCATCCCATGGCGCGCNTCCACCTCGTGGTCGTGGCCATGGCCGGGTTCTTCGCCGCCGCGGAGGTGGGGCATGACCATAGCGCCTCCACGACGCCGCATCCGAAGGCTCAGCCACAGGTGGCTACCCCGCCGAATCGCCCAAATTTCTAGGCCCTGGTGTCTCCTCACGCTGCTCCGCCGCCTGGGAATACGTATCCTCCGGTTATCAACGACCTTGCCTGTGACCGGCCCGGATGCCGCCCCCTATGACTTCCTCGCCTACCCTGACTAAGGTCATCCATGCCAACCAGATGAGCGTCCCTGACCCGACAAAGCGGCCGGCCTCGCGCTCTCCTATTGCAGTCCTGAGAGAACCCACCACTTCATATGCCTTGAACTGTCTTACCGTGATACATGCGTGATTTTCTCTCTACTGTGCCTATAAGACACCCTCTCTTCTGGTTCCAGTTAGGTCTGACTGGCCGTAATTCACGAGACACCCTCGTGGTATCACCCCTTCTTTTGGCGCGTGCGACCTAATACTGACCGGATACGCGAATAACGTTCTTAACGTTCTGGCCTTCTCTGCCTGATCACG]

[+] EMBL AU069546             [AGATNNCGAGCGGCCGCCGCCGACCCCACTTGGAAGTTGCAAAGCGAAGCCACCAACCTCAAAAACCCAAACCCTAGCTCTCCTCGCCGCCATCCCATGGCGCGCNTCCACCTCGTGGTCGTGGCCATGGCC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL CA756470             [                                                       ACCTCATAAACCCAAACCCTAGCTCTCCTCGCCGCCATCCCATGGCGCGCCTCCACCTCGAGGTCGTGGTCATGGGCGGGTTCTTCGCCGCCGCGGAGGTGGGGCATGACCATAGCGCCTCCACGACGCCGCATCCGAAGGCTCAGCCACAGGTGGCTACCCCGCCGAATCGCCCAAATTTCTAGGCCCTGGTGTCTCCTCACGCTGCTCCGCCGCCTGGGAATACGTATCCTCCGGTTATCAACGACCTTGCCTGTGACCGGCCCGGATGCCGCCCCCTATGACTTCCTCGCCTACCCTGACTAAGGTCATCCATGCCAACCAGATGAGCGTCCCTGACCCGACAAAGCGGCCGGCCTCGCGCTCTCCTATTGCAGTCCTGAGAGAACCCACCACTTCATATGCCTTGAACTGTCTTACCGTGATACATGCGTGATTTTCTCTCTACTGTGCCTATAAGACACCCTCTCTTCTGGTTCCAGTTAGGTCTGACTGGCCGTAATTCACGAGACACCCTCGTGGTATCACCCCTTCTTTTGGCGCGTGCGACCTAATACTGACCGGATACGCGAATAACGTTCTTAACGTTCTGGCCTTCTCTGCCTGATCACG]




>consensus_11005#0
AGATNNCGAGCGGCCGCCGCCGACCCCACTTGGAAGTTGCAAAGCGAAGCCACCAACCTC
AAAAACCCAAACCCTAGCTCTCCTCGCCGCCATCCCATGGCGCGCNTCCACCTCGTGGTC
GTGGCCATGGCCGGGTTCTTCGCCGCCGCGGAGGTGGGGCATGACCATAGCGCCTCCACG
ACGCCGCATCCGAAGGCTCAGCCACAGGTGGCTACCCCGCCGAATCGCCCAAATTTCTAG
GCCCTGGTGTCTCCTCACGCTGCTCCGCCGCCTGGGAATACGTATCCTCCGGTTATCAAC
GACCTTGCCTGTGACCGGCCCGGATGCCGCCCCCTATGACTTCCTCGCCTACCCTGACTA
AGGTCATCCATGCCAACCAGATGAGCGTCCCTGACCCGACAAAGCGGCCGGCCTCGCGCT
CTCCTATTGCAGTCCTGAGAGAACCCACCACTTCATATGCCTTGAACTGTCTTACCGTGA
TACATGCGTGATTTTCTCTCTACTGTGCCTATAAGACACCCTCTCTTCTGGTTCCAGTTA
GGTCTGACTGGCCGTAATTCACGAGACACCCTCGTGGTATCACCCCTTCTTTTGGCGCGT
GCGACCTAATACTGACCGGATACGCGAATAACGTTCTTAACGTTCTGGCCTTCTCTGCCT
GATCACG

consensusID : consensus_11005#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 579
fasta sequence

                              [CTCGCCGCCTCCCCCACTTGGAAGTTGCAAAGCGAAGCCCACCAACCTCAAAAACCCAAACCCTAGCTCTCCTCGCCGCCATCCCATGGCGCGCCTCCACCTCGTGGTCGTGGCCATGGCCGCGCTCTTCGCCGCCGCGGCGGTNGGCGCAGG-GCCCGAGCGCCTCCCCGACGCCGGCTCCGAAGGCGC-AGCCACCG-GTGGCGACCCCGCCGACTCGGCCGCCGGCCGTGGCGCCGGT-GTCTCCTCCCGCCGCCCAGCCGCCAGTGACGACGCCT-CCCCCGGTTTCCGCGCCCGCGCCCGTGCCCGCCCCGAGCGCCGCCGCGACACCGTCACCCCAGGCCTCGGCGCCGACCGCGGAGCCCCCCGTCCTCTCGCCGCCCGCGCCGGCTCCGGGGTCGATCTCCCAGTCCCCGACGGAGGCCCCGACGTCTCCGCCGCCACCGAGCGCCGCGTCCGGAGTCTCCCCCTCCGCCGCCGCCGTCGTCGCCGCCTGGGCCGCCGTGGCAGCCGTCGCGGCGTTCTACTGAGATCCGGCTCCCGGAGATGAGTTCCTCGCCGCCGCCGATATCATCACCGCCA]

[+] EMBL AK107940             [CTCGCCGCCTCCCCCACTTGGAAGTTGCAAAGCGAAGCCCACCAACCTCAAAAACCCAAACCCTAGCTCTCCTCGCCGCCATCCCATGGCGCGCCTCCACCTCGTGGTCGTGGCCATGGCCGCGCTCTTCGCCGCCGCGGCGGT GGCGCAGG GCCCGAGCGCCTCCCCGACGCCGGCTCCGAAGGCGC AGCCACCG GTGGCGACCCCGCCGACTCGGCCGCCGGCCGTGGCGCCGGT GTCTCCTCCCGCCGCCCAGCCGCCAGTGACGACGCCT CCCCCGGTTTCCGCGCCCGCGCCCGTGCCCGCCCCGAGCGCCGCCGCGACACCGTCACCCCAGGCCTCGGCGCCGACCGCGGAGCCCCCCGTCCTCTCGCCGCCCGCGCCGGCTCCGGGGTCGATCTCCCAGTCCCCGACGGAGGCCCCGACGTCTCCGCCGCCACCGAGCGCCGCGTCCGGAGTCTCCCCCTCCGCCGCCGCCGTCGTCGCCGCCTGGGCCGCCGTGGCAGCCGTCGCGGCGTTCTACTGAGATCCGGCTCCCGGAGATGAGTTCCTCGCCGCCGCCGATATCATCACCGCCA]
[+] EMBL OSC26471             [                                                  AAAACCCAAACCCTAGCTCTCCTCGCCGCCATCCCATGGCGCGCCTCCACCTCGTGGTCGTGGCCATGGCCGCGCTCTTCGCCGCCGCGGCGGTNGGCGCAGGAGCCCGAGCGCCTCCCCGACGCCGGCTCCGAAGGCGC AGCANCCGTNTGGCGACCCCGCCGACTNGGCCGCCGGCGTTGGCGCCGGTGGTCTCCTCCCGCCGCCCAGCCGCCAGTAACGACGCCTNCCCCGGGTTTCCGCGCCCGCG                                                                                                                                                                                                                                                                                           ]
[+] EMBL AU082920             [                                                                                                                                            CGGTTGGCNCAGG GCCGAAGCGCCTCCCCGACGCCGGCTCCGAAGGCGCAAGCCACCG GTGGCGACCCCGCCGACTCGGCCGCCGNCCGTGGCGCCGGT GTCTCCTCCCGCCGCCCAGCCGCCAGTGACGACGCCT CCCCCGGTTTCCGCGCCCGCGCCCGTGCCCGCCCCGAGCGCCGCCGCGACACCGTCACCCCAGGCCTCGGCGCCGACCGCGGAGCCCCCCGTCCTCTCGCCGCCCGCGCCGGCTCCGGGGTCGATCTCCCAGTCCCCGACGGAGGCCCCGACGTCTCCGCCGCCACCGAGCGCCGCGTCCGGAGTCTCCCCCTCCGCCGCCGCCGTCGTCGCCGCCTGGGCCGCCGTGGCAGCCGTCGCGGCGTTCTACTGAGATCCGGCTCCCGGAGATGAGTTCCTCGCCGCCGCCGATATCATCACCGCCA]




>consensus_11005#1
CTCGCCGCCTCCCCCACTTGGAAGTTGCAAAGCGAAGCCCACCAACCTCAAAAACCCAAA
CCCTAGCTCTCCTCGCCGCCATCCCATGGCGCGCCTCCACCTCGTGGTCGTGGCCATGGC
CGCGCTCTTCGCCGCCGCGGCGGTNGGCGCAGGGCCCGAGCGCCTCCCCGACGCCGGCTC
CGAAGGCGCAGCCACCGGTGGCGACCCCGCCGACTCGGCCGCCGGCCGTGGCGCCGGTGT
CTCCTCCCGCCGCCCAGCCGCCAGTGACGACGCCTCCCCCGGTTTCCGCGCCCGCGCCCG
TGCCCGCCCCGAGCGCCGCCGCGACACCGTCACCCCAGGCCTCGGCGCCGACCGCGGAGC
CCCCCGTCCTCTCGCCGCCCGCGCCGGCTCCGGGGTCGATCTCCCAGTCCCCGACGGAGG
CCCCGACGTCTCCGCCGCCACCGAGCGCCGCGTCCGGAGTCTCCCCCTCCGCCGCCGCCG
TCGTCGCCGCCTGGGCCGCCGTGGCAGCCGTCGCGGCGTTCTACTGAGATCCGGCTCCCG
GAGATGAGTTCCTCGCCGCCGCCGATATCATCACCGCCA

consensusID : consensus_11005#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 250
fasta sequence

                              [TCACCCAGGCCTCGGCGCCGACCGCGGAGCCCCCCGTCCTCTCGCCGCCCGCGCCAGGCTCCGGGGTCGATCTCCCAGTCCCCGACGGAGGCACCGACGTCTCTCGCCGCCACCAGAGCAGCCGCGTCCGGAGTCTCCCCCTCCAGCCGCCGCCGTCGTCGCCGCCTGGGCACGCCGTCGCGGCGTTCCTACTGAGATCCGGCTCCCGGAGATGAGTTCCTCTGCCTGCCTGCCGATATCATCACCGCCA]

[+] EMBL BI796802             [TCACCCAGGCCTCGGCGCCGACCGCGGAGCCCCCCGTCCTCTCGCCGCCCGCGCCAGGCTCCGGGGTCGATCTCCCAGTCCCCGACGGAGGCACCGACGTCTCTCGCCGCCACCAGAGCAGCCGCGTCCGGAGTCTCCCCCTCCAGCCGCCGCCGTCGTCGCCGCCTGGGCACGCCGTCGCGGCGTTCCTACTGAGATCCGGCTCCCGGAGATGAGTTCCTCTGCCTGCCTGCCGATATCATCACCGCCA]




>consensus_11005#2
TCACCCAGGCCTCGGCGCCGACCGCGGAGCCCCCCGTCCTCTCGCCGCCCGCGCCAGGCT
CCGGGGTCGATCTCCCAGTCCCCGACGGAGGCACCGACGTCTCTCGCCGCCACCAGAGCA
GCCGCGTCCGGAGTCTCCCCCTCCAGCCGCCGCCGTCGTCGCCGCCTGGGCACGCCGTCG
CGGCGTTCCTACTGAGATCCGGCTCCCGGAGATGAGTTCCTCTGCCTGCCTGCCGATATC
ATCACCGCCA

consensusID : consensus_11005#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 192
fasta sequence

                              [CCGGGAAGTTGCAAAGCGAAGCCACCAACCTCAAAAACCCAAACCCTAGCTCTCCTCGCCGCCATCCCATGGCGCGCCTCCACCTCGTGGTCGTGGCCATGGCCGCGCTCTTNGCCGCCGCGGGGTGNGCGCAGGGCCCGANCGNNTCCCCGANGCCGNCTCCNAAGNGCACACNCGGTGGCNACCCCGCCN]

[+] EMBL OSC31572             [CCGGGAAGTTGCAAAGCGAAGCCACCAACCTCAAAAACCCAAACCCTAGCTCTCCTCGCCGCCATCCCATGGCGCGCCTCCACCTCGTGGTCGTGGCCATGGCCGCGCTCTTNGCCGCCGCGGGGTGNGCGCAGGGCCCGANCGNNTCCCCGANGCCGNCTCCNAAGNGCACACNCGGTGGCNACCCCGCCN]




>consensus_11005#3
CCGGGAAGTTGCAAAGCGAAGCCACCAACCTCAAAAACCCAAACCCTAGCTCTCCTCGCC
GCCATCCCATGGCGCGCCTCCACCTCGTGGTCGTGGCCATGGCCGCGCTCTTNGCCGCCG
CGGGGTGNGCGCAGGGCCCGANCGNNTCCCCGANGCCGNCTCCNAAGNGCACACNCGGTG
GCNACCCCGCCN

consensusID : consensus_11005#4
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 181
fasta sequence

                              [CCCACTTGGAAGTTGCAAAGCGAAGCCACCAACCTCAAAAACCCAAACCCTAGCTCTCCTCGCCGCCATCCCATGGNGCGCCTCCACCTCGTGGTNGTGGCCATGGCCGNGCTNTTCGACGCCGNGGCGNNTGGCGCAGGGCCCNANNGCCTACCCGANGCCGGTTCCGAAGCGCAGCAAC]

[+] EMBL OSC30641             [CCCACTTGGAAGTTGCAAAGCGAAGCCACCAACCTCAAAAACCCAAACCCTAGCTCTCCTCGCCGCCATCCCATGGNGCGCCTCCACCTCGTGGTNGTGGCCATGGCCGNGCTNTTCGACGCCGNGGCGNNTGGCGCAGGGCCCNANNGCCTACCCGANGCCGGTTCCGAAGCGCAGCAAC]




>consensus_11005#4
CCCACTTGGAAGTTGCAAAGCGAAGCCACCAACCTCAAAAACCCAAACCCTAGCTCTCCT
CGCCGCCATCCCATGGNGCGCCTCCACCTCGTGGTNGTGGCCATGGCCGNGCTNTTCGAC
GCCGNGGCGNNTGGCGCAGGGCCCNANNGCCTACCCGANGCCGGTTCCGAAGCGCAGCAA
C

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_11005#0      AGATNNCGAGCGGCCGCCGCCGACCCC--ACTTGGAAGTTGCAAAGCGAAGCC-ACCAAC 57
consensus_11005#3      ------------------------------CCGGGAAGTTGCAAAGCGAAGCC-ACCAAC 29
consensus_11005#4      ------------------------CCC--ACTTGGAAGTTGCAAAGCGAAGCC-ACCAAC 33
consensus_11005#1      ------------CTCGCCGCCTCCCCC--ACTTGGAAGTTGCAAAGCGAAGCCCACCAAC 46
consensus_11005#2      --TCACCCAGGCCTCGGCGCCGACCGCGGAGCCCCCCGTCCTCTCGCCGCCCGCGCCAGG 58
                                                            **      **    *   ***  

consensus_11005#0      CTCAAAAACCCAAACCCTAGCTCTCCTCGCCGCCATCC-CATGGCGCGCNTCCACCTC-G 115
consensus_11005#3      CTCAAAAACCCAAACCCTAGCTCTCCTCGCCGCCATCC-CATGGCGCGCCTCCACCTC-G 87
consensus_11005#4      CTCAAAAACCCAAACCCTAGCTCTCCTCGCCGCCATCC-CATGGNGCGCCTCCACCTC-G 91
consensus_11005#1      CTCAAAAACCCAAACCCTAGCTCTCCTCGCCGCCATCC-CATGGCGCGCCTCCACCTC-G 104
consensus_11005#2      CTCCGGGGTCGATCTCCCAGTCCCCGACGGAGGCACCGACGTCTCTCGCCGCCACCAGAG 118
                       ***      * *   ** **  * *  **  * ** *  * *    ***  *****   *

consensus_11005#0      TGGTCGTGGCCATGGCCGGGTTCTTC-GCCGCCGCGG-AGGTGGGGCATGACCATAGCGC 173
consensus_11005#3      TGGTCGTGGCCATGGCCGCGCTCTTN-GCCGCCGCGG-GGTGNGCGCAGGGCCCGANCGN 145
consensus_11005#4      TGGTNGTGGCCATGGCCGNGCTNTTC-GACGCCGNGGCGNNTGGCGCAGGGCCCNANNGC 150
consensus_11005#1      TGGTCGTGGCCATGGCCGCGCTCTTC-GCCGCCGCGGCGGTNGGCGCAGGGCCCGAGCGC 163
consensus_11005#2      CAGCCGCGTCCGGAGTCTCCCCCTCCAGCCGCCGCCGTCGTCGCCGCCTGGGC---ACGC 175
                         *  * * **   * *      *   * *****  *        **  *  *     * 

consensus_11005#0      CTCCACGACGCCGCATCCGAAGGCTCAGCCACAGGTGGCTACCCCGCCGAATCGCCCAAA 233
consensus_11005#3      NTCCCCGANGCCGNCTCCNAAGNG-CACACNC-GGTGGCNACCCCGCCN----------- 192
consensus_11005#4      CTACCCGANGCCGGTTCCGAAGCG-CAGCAAC---------------------------- 181
consensus_11005#1      CTCCCCGACGCCGGCTCCGAAGGCGCAGCCACCGGTGGCGACCCCGCCGACTCGGCCGCC 223
consensus_11005#2      CGTCGCGGCGTTCCTACTGAGATC-CGGCTCCCGGAGATGAGTTCCTCTGCCTGCCTGCC 234
                          * **  *      *  *     *     *                            

consensus_11005#0      TTTCTAGGCCCTGGTGTCTCCTCACGCTGCTCCGCCGCCTGGGAATACGTATCCTCCGGT 293
consensus_11005#3      ------------------------------------------------------------
consensus_11005#4      ------------------------------------------------------------
consensus_11005#1      GGCCGTGGCGCCGGTGTCTCCTCCCGCCGCCCAGCCGCCAGTGACGACGCCTCCCCCGGT 283
consensus_11005#2      GATATCATCACCGCCA-------------------------------------------- 250
                                                                                   

consensus_11005#0      TATCAACGACCTTGCCTGTGACCGGCCCGGATGCCGCCCCCTATGACTTCCTCGCCTACC 353
consensus_11005#3      ------------------------------------------------------------
consensus_11005#4      ------------------------------------------------------------
consensus_11005#1      T-TCCGCGCCCGCGCCCGTGCCCGCCCCGAGCGCCGCCGCG-ACACCGTCACCCCAGGCC 341
consensus_11005#2      ------------------------------------------------------------
                                                                                   

consensus_11005#0      CTGACTAAGGTCATCCATGCCAACCAGATGAGCGTCCCTGACCCGACAAAGCGGCCGGCC 413
consensus_11005#3      ------------------------------------------------------------
consensus_11005#4      ------------------------------------------------------------
consensus_11005#1      TCGGCGCCGACCGCGGAGCCCCCCGTCCTCTCGCCGCCCGCGCCGGCTCCGGGGTCGATC 401
consensus_11005#2      ------------------------------------------------------------
                                                                                   

consensus_11005#0      TCGCGCTCTCCTATTGCAGTCCTGAGAGAACCCACCACTTCATATGCCTTGAACTGTCTT 473
consensus_11005#3      ------------------------------------------------------------
consensus_11005#4      ------------------------------------------------------------
consensus_11005#1      TCCCAGTCCCCGACGGAGGCCCCGACGTCTCCGCCGCCACCGAGCGCCGCGTCCGGAGTC 461
consensus_11005#2      ------------------------------------------------------------
                                                                                   

consensus_11005#0      ACCGTGATACATGCGTGATTTTCTCTCTACTGTGCCTATAAGACACCCTCTCTTCTGGTT 533
consensus_11005#3      ------------------------------------------------------------
consensus_11005#4      ------------------------------------------------------------
consensus_11005#1      TCCCCCTCCGCCGCCGCCGTCGTCGCCGCCTGGGCCGCCGTGGCAGCCG-TCGCGGCGTT 520
consensus_11005#2      ------------------------------------------------------------
                                                                                   

consensus_11005#0      CCAGTTAGGTCTGACTGGCCGTAATTCACGAGACACCCTCGT-GGTATCACCCCTTCTTT 592
consensus_11005#3      ------------------------------------------------------------
consensus_11005#4      ------------------------------------------------------------
consensus_11005#1      CTACTGAGATCCGGCTCCCGGAGATGAGTTCCTCGCCGCCGCCGATATCATCACCGCCA- 579
consensus_11005#2      ------------------------------------------------------------
                                                                                   

consensus_11005#0      TGGCGCGTGCGACCTAATACTGACCGGATACGCGAATAACGTTCTTAACGTTCTGGCCTT 652
consensus_11005#3      ------------------------------------------------------------
consensus_11005#4      ------------------------------------------------------------
consensus_11005#1      ------------------------------------------------------------
consensus_11005#2      ------------------------------------------------------------
                                                                                   

consensus_11005#0      CTCTGCCTGATCACG 667
consensus_11005#3      ---------------
consensus_11005#4      ---------------
consensus_11005#1      ---------------
consensus_11005#2      ---------------