These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11005#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 667 fasta sequence [AGATNNCGAGCGGCCGCCGCCGACCCCACTTGGAAGTTGCAAAGCGAAGCCACCAACCTCAAAAACCCAAACCCTAGCTCTCCTCGCCGCCATCCCATGGCGCGCNTCCACCTCGTGGTCGTGGCCATGGCCGGGTTCTTCGCCGCCGCGGAGGTGGGGCATGACCATAGCGCCTCCACGACGCCGCATCCGAAGGCTCAGCCACAGGTGGCTACCCCGCCGAATCGCCCAAATTTCTAGGCCCTGGTGTCTCCTCACGCTGCTCCGCCGCCTGGGAATACGTATCCTCCGGTTATCAACGACCTTGCCTGTGACCGGCCCGGATGCCGCCCCCTATGACTTCCTCGCCTACCCTGACTAAGGTCATCCATGCCAACCAGATGAGCGTCCCTGACCCGACAAAGCGGCCGGCCTCGCGCTCTCCTATTGCAGTCCTGAGAGAACCCACCACTTCATATGCCTTGAACTGTCTTACCGTGATACATGCGTGATTTTCTCTCTACTGTGCCTATAAGACACCCTCTCTTCTGGTTCCAGTTAGGTCTGACTGGCCGTAATTCACGAGACACCCTCGTGGTATCACCCCTTCTTTTGGCGCGTGCGACCTAATACTGACCGGATACGCGAATAACGTTCTTAACGTTCTGGCCTTCTCTGCCTGATCACG] [+] EMBL AU069546 [AGATNNCGAGCGGCCGCCGCCGACCCCACTTGGAAGTTGCAAAGCGAAGCCACCAACCTCAAAAACCCAAACCCTAGCTCTCCTCGCCGCCATCCCATGGCGCGCNTCCACCTCGTGGTCGTGGCCATGGCC ] [+] EMBL CA756470 [ ACCTCATAAACCCAAACCCTAGCTCTCCTCGCCGCCATCCCATGGCGCGCCTCCACCTCGAGGTCGTGGTCATGGGCGGGTTCTTCGCCGCCGCGGAGGTGGGGCATGACCATAGCGCCTCCACGACGCCGCATCCGAAGGCTCAGCCACAGGTGGCTACCCCGCCGAATCGCCCAAATTTCTAGGCCCTGGTGTCTCCTCACGCTGCTCCGCCGCCTGGGAATACGTATCCTCCGGTTATCAACGACCTTGCCTGTGACCGGCCCGGATGCCGCCCCCTATGACTTCCTCGCCTACCCTGACTAAGGTCATCCATGCCAACCAGATGAGCGTCCCTGACCCGACAAAGCGGCCGGCCTCGCGCTCTCCTATTGCAGTCCTGAGAGAACCCACCACTTCATATGCCTTGAACTGTCTTACCGTGATACATGCGTGATTTTCTCTCTACTGTGCCTATAAGACACCCTCTCTTCTGGTTCCAGTTAGGTCTGACTGGCCGTAATTCACGAGACACCCTCGTGGTATCACCCCTTCTTTTGGCGCGTGCGACCTAATACTGACCGGATACGCGAATAACGTTCTTAACGTTCTGGCCTTCTCTGCCTGATCACG] consensusID : consensus_11005#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 579 fasta sequence [CTCGCCGCCTCCCCCACTTGGAAGTTGCAAAGCGAAGCCCACCAACCTCAAAAACCCAAACCCTAGCTCTCCTCGCCGCCATCCCATGGCGCGCCTCCACCTCGTGGTCGTGGCCATGGCCGCGCTCTTCGCCGCCGCGGCGGTNGGCGCAGG-GCCCGAGCGCCTCCCCGACGCCGGCTCCGAAGGCGC-AGCCACCG-GTGGCGACCCCGCCGACTCGGCCGCCGGCCGTGGCGCCGGT-GTCTCCTCCCGCCGCCCAGCCGCCAGTGACGACGCCT-CCCCCGGTTTCCGCGCCCGCGCCCGTGCCCGCCCCGAGCGCCGCCGCGACACCGTCACCCCAGGCCTCGGCGCCGACCGCGGAGCCCCCCGTCCTCTCGCCGCCCGCGCCGGCTCCGGGGTCGATCTCCCAGTCCCCGACGGAGGCCCCGACGTCTCCGCCGCCACCGAGCGCCGCGTCCGGAGTCTCCCCCTCCGCCGCCGCCGTCGTCGCCGCCTGGGCCGCCGTGGCAGCCGTCGCGGCGTTCTACTGAGATCCGGCTCCCGGAGATGAGTTCCTCGCCGCCGCCGATATCATCACCGCCA] [+] EMBL AK107940 [CTCGCCGCCTCCCCCACTTGGAAGTTGCAAAGCGAAGCCCACCAACCTCAAAAACCCAAACCCTAGCTCTCCTCGCCGCCATCCCATGGCGCGCCTCCACCTCGTGGTCGTGGCCATGGCCGCGCTCTTCGCCGCCGCGGCGGT GGCGCAGG GCCCGAGCGCCTCCCCGACGCCGGCTCCGAAGGCGC AGCCACCG GTGGCGACCCCGCCGACTCGGCCGCCGGCCGTGGCGCCGGT GTCTCCTCCCGCCGCCCAGCCGCCAGTGACGACGCCT CCCCCGGTTTCCGCGCCCGCGCCCGTGCCCGCCCCGAGCGCCGCCGCGACACCGTCACCCCAGGCCTCGGCGCCGACCGCGGAGCCCCCCGTCCTCTCGCCGCCCGCGCCGGCTCCGGGGTCGATCTCCCAGTCCCCGACGGAGGCCCCGACGTCTCCGCCGCCACCGAGCGCCGCGTCCGGAGTCTCCCCCTCCGCCGCCGCCGTCGTCGCCGCCTGGGCCGCCGTGGCAGCCGTCGCGGCGTTCTACTGAGATCCGGCTCCCGGAGATGAGTTCCTCGCCGCCGCCGATATCATCACCGCCA] [+] EMBL OSC26471 [ AAAACCCAAACCCTAGCTCTCCTCGCCGCCATCCCATGGCGCGCCTCCACCTCGTGGTCGTGGCCATGGCCGCGCTCTTCGCCGCCGCGGCGGTNGGCGCAGGAGCCCGAGCGCCTCCCCGACGCCGGCTCCGAAGGCGC AGCANCCGTNTGGCGACCCCGCCGACTNGGCCGCCGGCGTTGGCGCCGGTGGTCTCCTCCCGCCGCCCAGCCGCCAGTAACGACGCCTNCCCCGGGTTTCCGCGCCCGCG ] [+] EMBL AU082920 [ CGGTTGGCNCAGG GCCGAAGCGCCTCCCCGACGCCGGCTCCGAAGGCGCAAGCCACCG GTGGCGACCCCGCCGACTCGGCCGCCGNCCGTGGCGCCGGT GTCTCCTCCCGCCGCCCAGCCGCCAGTGACGACGCCT CCCCCGGTTTCCGCGCCCGCGCCCGTGCCCGCCCCGAGCGCCGCCGCGACACCGTCACCCCAGGCCTCGGCGCCGACCGCGGAGCCCCCCGTCCTCTCGCCGCCCGCGCCGGCTCCGGGGTCGATCTCCCAGTCCCCGACGGAGGCCCCGACGTCTCCGCCGCCACCGAGCGCCGCGTCCGGAGTCTCCCCCTCCGCCGCCGCCGTCGTCGCCGCCTGGGCCGCCGTGGCAGCCGTCGCGGCGTTCTACTGAGATCCGGCTCCCGGAGATGAGTTCCTCGCCGCCGCCGATATCATCACCGCCA] consensusID : consensus_11005#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 250 fasta sequence [TCACCCAGGCCTCGGCGCCGACCGCGGAGCCCCCCGTCCTCTCGCCGCCCGCGCCAGGCTCCGGGGTCGATCTCCCAGTCCCCGACGGAGGCACCGACGTCTCTCGCCGCCACCAGAGCAGCCGCGTCCGGAGTCTCCCCCTCCAGCCGCCGCCGTCGTCGCCGCCTGGGCACGCCGTCGCGGCGTTCCTACTGAGATCCGGCTCCCGGAGATGAGTTCCTCTGCCTGCCTGCCGATATCATCACCGCCA] [+] EMBL BI796802 [TCACCCAGGCCTCGGCGCCGACCGCGGAGCCCCCCGTCCTCTCGCCGCCCGCGCCAGGCTCCGGGGTCGATCTCCCAGTCCCCGACGGAGGCACCGACGTCTCTCGCCGCCACCAGAGCAGCCGCGTCCGGAGTCTCCCCCTCCAGCCGCCGCCGTCGTCGCCGCCTGGGCACGCCGTCGCGGCGTTCCTACTGAGATCCGGCTCCCGGAGATGAGTTCCTCTGCCTGCCTGCCGATATCATCACCGCCA] consensusID : consensus_11005#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 192 fasta sequence [CCGGGAAGTTGCAAAGCGAAGCCACCAACCTCAAAAACCCAAACCCTAGCTCTCCTCGCCGCCATCCCATGGCGCGCCTCCACCTCGTGGTCGTGGCCATGGCCGCGCTCTTNGCCGCCGCGGGGTGNGCGCAGGGCCCGANCGNNTCCCCGANGCCGNCTCCNAAGNGCACACNCGGTGGCNACCCCGCCN] [+] EMBL OSC31572 [CCGGGAAGTTGCAAAGCGAAGCCACCAACCTCAAAAACCCAAACCCTAGCTCTCCTCGCCGCCATCCCATGGCGCGCCTCCACCTCGTGGTCGTGGCCATGGCCGCGCTCTTNGCCGCCGCGGGGTGNGCGCAGGGCCCGANCGNNTCCCCGANGCCGNCTCCNAAGNGCACACNCGGTGGCNACCCCGCCN] consensusID : consensus_11005#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 181 fasta sequence [CCCACTTGGAAGTTGCAAAGCGAAGCCACCAACCTCAAAAACCCAAACCCTAGCTCTCCTCGCCGCCATCCCATGGNGCGCCTCCACCTCGTGGTNGTGGCCATGGCCGNGCTNTTCGACGCCGNGGCGNNTGGCGCAGGGCCCNANNGCCTACCCGANGCCGGTTCCGAAGCGCAGCAAC] [+] EMBL OSC30641 [CCCACTTGGAAGTTGCAAAGCGAAGCCACCAACCTCAAAAACCCAAACCCTAGCTCTCCTCGCCGCCATCCCATGGNGCGCCTCCACCTCGTGGTNGTGGCCATGGCCGNGCTNTTCGACGCCGNGGCGNNTGGCGCAGGGCCCNANNGCCTACCCGANGCCGGTTCCGAAGCGCAGCAAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_11005#0 AGATNNCGAGCGGCCGCCGCCGACCCC--ACTTGGAAGTTGCAAAGCGAAGCC-ACCAAC 57 consensus_11005#3 ------------------------------CCGGGAAGTTGCAAAGCGAAGCC-ACCAAC 29 consensus_11005#4 ------------------------CCC--ACTTGGAAGTTGCAAAGCGAAGCC-ACCAAC 33 consensus_11005#1 ------------CTCGCCGCCTCCCCC--ACTTGGAAGTTGCAAAGCGAAGCCCACCAAC 46 consensus_11005#2 --TCACCCAGGCCTCGGCGCCGACCGCGGAGCCCCCCGTCCTCTCGCCGCCCGCGCCAGG 58 ** ** * *** consensus_11005#0 CTCAAAAACCCAAACCCTAGCTCTCCTCGCCGCCATCC-CATGGCGCGCNTCCACCTC-G 115 consensus_11005#3 CTCAAAAACCCAAACCCTAGCTCTCCTCGCCGCCATCC-CATGGCGCGCCTCCACCTC-G 87 consensus_11005#4 CTCAAAAACCCAAACCCTAGCTCTCCTCGCCGCCATCC-CATGGNGCGCCTCCACCTC-G 91 consensus_11005#1 CTCAAAAACCCAAACCCTAGCTCTCCTCGCCGCCATCC-CATGGCGCGCCTCCACCTC-G 104 consensus_11005#2 CTCCGGGGTCGATCTCCCAGTCCCCGACGGAGGCACCGACGTCTCTCGCCGCCACCAGAG 118 *** * * ** ** * * ** * ** * * * *** ***** * consensus_11005#0 TGGTCGTGGCCATGGCCGGGTTCTTC-GCCGCCGCGG-AGGTGGGGCATGACCATAGCGC 173 consensus_11005#3 TGGTCGTGGCCATGGCCGCGCTCTTN-GCCGCCGCGG-GGTGNGCGCAGGGCCCGANCGN 145 consensus_11005#4 TGGTNGTGGCCATGGCCGNGCTNTTC-GACGCCGNGGCGNNTGGCGCAGGGCCCNANNGC 150 consensus_11005#1 TGGTCGTGGCCATGGCCGCGCTCTTC-GCCGCCGCGGCGGTNGGCGCAGGGCCCGAGCGC 163 consensus_11005#2 CAGCCGCGTCCGGAGTCTCCCCCTCCAGCCGCCGCCGTCGTCGCCGCCTGGGC---ACGC 175 * * * ** * * * * ***** * ** * * * consensus_11005#0 CTCCACGACGCCGCATCCGAAGGCTCAGCCACAGGTGGCTACCCCGCCGAATCGCCCAAA 233 consensus_11005#3 NTCCCCGANGCCGNCTCCNAAGNG-CACACNC-GGTGGCNACCCCGCCN----------- 192 consensus_11005#4 CTACCCGANGCCGGTTCCGAAGCG-CAGCAAC---------------------------- 181 consensus_11005#1 CTCCCCGACGCCGGCTCCGAAGGCGCAGCCACCGGTGGCGACCCCGCCGACTCGGCCGCC 223 consensus_11005#2 CGTCGCGGCGTTCCTACTGAGATC-CGGCTCCCGGAGATGAGTTCCTCTGCCTGCCTGCC 234 * ** * * * * * consensus_11005#0 TTTCTAGGCCCTGGTGTCTCCTCACGCTGCTCCGCCGCCTGGGAATACGTATCCTCCGGT 293 consensus_11005#3 ------------------------------------------------------------ consensus_11005#4 ------------------------------------------------------------ consensus_11005#1 GGCCGTGGCGCCGGTGTCTCCTCCCGCCGCCCAGCCGCCAGTGACGACGCCTCCCCCGGT 283 consensus_11005#2 GATATCATCACCGCCA-------------------------------------------- 250 consensus_11005#0 TATCAACGACCTTGCCTGTGACCGGCCCGGATGCCGCCCCCTATGACTTCCTCGCCTACC 353 consensus_11005#3 ------------------------------------------------------------ consensus_11005#4 ------------------------------------------------------------ consensus_11005#1 T-TCCGCGCCCGCGCCCGTGCCCGCCCCGAGCGCCGCCGCG-ACACCGTCACCCCAGGCC 341 consensus_11005#2 ------------------------------------------------------------ consensus_11005#0 CTGACTAAGGTCATCCATGCCAACCAGATGAGCGTCCCTGACCCGACAAAGCGGCCGGCC 413 consensus_11005#3 ------------------------------------------------------------ consensus_11005#4 ------------------------------------------------------------ consensus_11005#1 TCGGCGCCGACCGCGGAGCCCCCCGTCCTCTCGCCGCCCGCGCCGGCTCCGGGGTCGATC 401 consensus_11005#2 ------------------------------------------------------------ consensus_11005#0 TCGCGCTCTCCTATTGCAGTCCTGAGAGAACCCACCACTTCATATGCCTTGAACTGTCTT 473 consensus_11005#3 ------------------------------------------------------------ consensus_11005#4 ------------------------------------------------------------ consensus_11005#1 TCCCAGTCCCCGACGGAGGCCCCGACGTCTCCGCCGCCACCGAGCGCCGCGTCCGGAGTC 461 consensus_11005#2 ------------------------------------------------------------ consensus_11005#0 ACCGTGATACATGCGTGATTTTCTCTCTACTGTGCCTATAAGACACCCTCTCTTCTGGTT 533 consensus_11005#3 ------------------------------------------------------------ consensus_11005#4 ------------------------------------------------------------ consensus_11005#1 TCCCCCTCCGCCGCCGCCGTCGTCGCCGCCTGGGCCGCCGTGGCAGCCG-TCGCGGCGTT 520 consensus_11005#2 ------------------------------------------------------------ consensus_11005#0 CCAGTTAGGTCTGACTGGCCGTAATTCACGAGACACCCTCGT-GGTATCACCCCTTCTTT 592 consensus_11005#3 ------------------------------------------------------------ consensus_11005#4 ------------------------------------------------------------ consensus_11005#1 CTACTGAGATCCGGCTCCCGGAGATGAGTTCCTCGCCGCCGCCGATATCATCACCGCCA- 579 consensus_11005#2 ------------------------------------------------------------ consensus_11005#0 TGGCGCGTGCGACCTAATACTGACCGGATACGCGAATAACGTTCTTAACGTTCTGGCCTT 652 consensus_11005#3 ------------------------------------------------------------ consensus_11005#4 ------------------------------------------------------------ consensus_11005#1 ------------------------------------------------------------ consensus_11005#2 ------------------------------------------------------------ consensus_11005#0 CTCTGCCTGATCACG 667 consensus_11005#3 --------------- consensus_11005#4 --------------- consensus_11005#1 --------------- consensus_11005#2 --------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||