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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1101#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1931 fasta sequence
[TCTTCCATTCTGCTTGAACTACCGCCCGCGCCGCCGATGGCCGCCGCCGCCGCGGCGACGTGGCGCCTCTGGAGGCCCTACTCCTCCGCTCTCCTCTCTCGCCGGGTGAACCCGAGGTTCCTCCGTACTACGCCGTGCGTCTCCTACCCCGGCGGCGCCGCGGCTTCTGCGGCGCCACCCTCGCCTCCGCTTGCCACCACCTGCTCCGACGATTGGGGCGGCGGGATGAGGTGGGAGTCCGCGCGGAAGAAGAGGGTCGTGCTCCGCGTAGGCTACGTCGGCACGGAGTACCGAGGTCTTCAGAAGCAGCGGGAGCTCAGCGCGGACTCGACAATTGAGTCAGTCTTGGAAACAGCCATCTTCAAGGCTGGGGGCATTCTTGAGAGTAATTATGGGAAGCTGCAAAAAGTTGGCTGGGAAAGGAGTAGTAGAACTGATAAAGGGGTACATTCACTGGCCACAATGATCTCTCTGAAAATGGAAATCCCTGATCGAGCATGGGAGAATGATCCTGATGGCATTGCTCTTTCAAACTTCATTAACTCAAATTTGCCAGACAATGTTAGAGTTTTCAGTGTTTTGCTGCTCAAAGGAGTTTCGATGTGAGGAGGGAATGCTTGTATCGGGAATACTTGTATCTTCTTCCTGCTGAAATAATTGGAATTAAAGGTGGTTGTAGCTCTGAAGAAGTAATGGAACACCTGTCAGAATTCAATAGCATTCTGAAAGGTTTTGAGGGAAACCATCCATTTCATAATTACACTGCTCGTGCCAAGTATAGGAAAGTTCTAGCAGGAAGGCATCGTAAGGTAAAAGGGGCAAGCTCAGCTGTAAATTCCATGCCCACTGAAATGAGTTTGGACCAAAGCTCCTCTGATGACGGAACTACTTCAGACCATGATGAAGAAGACTTGAACTCTTCGTCGATAATTGGTTCTAGTGTACCAGAAGACAGTTATAAGGATAATCCCGAATTTTCTGAGAAGCAGGTTCAGATTCGAGCTAGGTGGCTTCATGAGCCTGATGAAAATGATCGACTGAATGCTTCACATTTCAGAGATATCCTCACATTCTCCTGTGGAGAGCTCCAGATTTCATCAGGAATTCAATTTGTGGAATTGACTATATCAGGAGTATCTTTCATGCTGCATCAGATCCGGAAGATGGTTGGTACTTCGGTGGCGGTTAAGCGTGGATTACTACCCAAAGATATTATAGCACTGTCTCTTGCAAAGTTTTCTCGCATTGTGTTACCAATTGCCCCTTCTGAAGTTTTGGTGCTTAGAGATAACAGTTTCTGCCTGAGGAACAAGCAAGGGACTATAGTTCGCCCTGGGATCCAATCAATGAATGAATCTGAAGAAGTCAAGAAGGGGGTAATGGAATTCTACAGGGCAGCTCTTGTTCCAGAGCTAGCAAACTTCCTGGATGCATCCATGCCTCCATGGAAAGAATGGGTGGAGAACTTGGACCGATTCACGAGCATACCAGATCCACAGCTGGAGGAAGTTAGGAGCGCTTATAGGGTGTGGAAAGCGGACTACGACCGAGTAAAAATGGCCAGAAAGAGTGCCAGCAGCGACTAATTTGTTGCCAAGCCCATCGCACAGTGAATGATGGGCTAAATAAAATTCTTAGCTGAAGAGAACCCCATGATTCTATCTCGGATATTTCTTCATACAGGAGCAGGAGCAGCCTGACTGTCGGGCAGAGCCTTGTTTTGATCATGGCCAGTGAGCCATTGAGACTGAGCTATTGGTTGATCGGACTACTACAACCTTCAGATTTGGTTCAATTGAATGTTTTTGCTTACCGTTTTGCCTAAGCCAATGTTATGTTGTATCCCGGCCACTGCAAAATCTTTGCAGAGCAATACTCTGATCAGTTGTTAAAGGAAAACCGAAGGTAGAAACATCGTTAATTATCTGACG]
[+] EMBL AK066604 [TCTTCCATTCTGCTTGAACTACCGCCCGCGCCGCCGATGGCCGCCGCCGCCGCGGCGACGTGGCGCCTCTGGAGGCCCTACTCCTCCGCTCTCCTCTCTCGCCGGGTGAACCCGAGGTTCCTCCGTACTACGCCGTGCGTCTCCTACCCCGGCGGCGCCGCGGCTTCTGCGGCGCCACCCTCGCCTCCGCTTGCCACCACCTGCTCCGACGATTGGGGCGGCGGGATGAGGTGGGAGTCCGCGCGGAAGAAGAGGGTCGTGCTCCGCGTAGGCTACGTCGGCACGGAGTACCGAGGTCTTCAGAAGCAGCGGGAGCTCAGCGCGGACTCGACAATTGAGTCAGTCTTGGAAACAGCCATCTTCAAGGCTGGGGGCATTCTTGAGAGTAATTATGGGAAGCTGCAAAAAGTTGGCTGGGAAAGGAGTAGTAGAACTGATAAAGGGGTACATTCACTGGCCACAATGATCTCTCTGAAAATGGAAATCCCTGATCGAGCATGGGAGAATGATCCTGATGGCATTGCTCTTTCAAACTTCATTAACTCAAATTTGCCAGACAATGTTAGAGTTTTCAGTGTTTTGCTGCTCAAAGGAGTTTCGATGTGAGGAGGGAATGCTTGTATCGGGAATACTTGTATCTTCTTCCTGCTGAAATAATTGGAATTAAAGGTGGTTGTAGCTCTGAAGAAGTAATGGAACACCTGTCAGAATTCAATAGCATTCTGAAAGGTTTTGAGGGAAACCATCCATTTCATAATTACACTGCTCGTGCCAAGTATAGGAAAGTTCTAGCAGGAAGGCATCGTAAGGTAAAAGGGGCAAGCTCAGCTGTAAATTCCATGCCCACTGAAATGAGTTTGGACCAAAGCTCCTCTGATGACGGAACTACTTCAGACCATGATGAAGAAGACTTGAACTCTTCGTCGATAATTGGTTCTAGTGTACCAGAAGACAGTTATAAGGATAATCCCGAATTTTCTGAGAAGCAGGTTCAGATTCGAGCTAGGTGGCTTCATGAGCCTGATGAAAATGATCGACTGAATGCTTCACATTTCAGAGATATCCTCACATTCTCCTGTGGAGAGCTCCAGATTTCATCAGGAATTCAATTTGTGGAATTGACTATATCAGGAGTATCTTTCATGCTGCATCAGATCCGGAAGATGGTTGGTACTTCGGTGGCGGTTAAGCGTGGATTACTACCCAAAGATATTATAGCACTGTCTCTTGCAAAGTTTTCTCGCATTGTGTTACCAATTGCCCCTTCTGAAGTTTTGGTGCTTAGAGATAACAGTTTCTGCCTGAGGAACAAGCAAGGGACTATAGTTCGCCCTGGGATCCAATCAATGAATGAATCTGAAGAAGTCAAGAAGGGGGTAATGGAATTCTACAGGGCAGCTCTTGTTCCAGAGCTAGCAAACTTCCTGGATGCATCCATGCCTCCATGGAAAGAATGGGTGGAGAACTTGGACCGATTCACGAGCATACCAGATCCACAGCTGGAGGAAGTTAGGAGCGCTTATAGGGTGTGGAAAGCGGACTACGACCGAGTAAAAATGGCCAGAAAGAGTGCCAGCAGCGACTAATTTGTTGCCAAGCCCATCGCACAGTGAATGATGGGCTAAATAAAATTCTTAGCTGAAGAGAACCCCATGATTCTATCTCGGATATTTCTTCATACAGGAGCAGGAGCAGCCTGACTGTCGGGCAGAGCCTTGTTTTGATCATGGCCAGTGAGCCATTGAGACTGAGCTATTGGTTGATCGGACTACTACAACCTTCAGATTTGGTTCAATTGAATGTTTTTGCTTACCGTTTTGCCTAAGCCAATGTTATGTTGTATCCCGGCCACTGCAAAATCTTTGCAGAGCAATACTCTGATCAGTTGTTAAAGGAAAACCGAAGGTAGAAACATCGTTAATTATCTGACG]
consensusID : consensus_1101#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 608 fasta sequence
[ACCGCCCGCGCCGCCGATGGCCGCCGCCGCCGCGGCGACGTGGCGCCTCTGGAGGCCCTACTCCTCCGCTCTCCTCTCTCGCCGGGTGAACCCGAGGTTCCTCCGTACTACGCCGTGCGTCTCCTACCCCGGCGGCGCCGCGGCTTCTGCGGCGCCACCCTCGCCTCCGCTTGCCACCACCTGCTCCGACGATTGGGGCGGCGGGATGAGGTGGGAGTCCGCGCGGAAGAAGAGGGTCGTGCTCCGCGTAGGCTACGTCGGCACGGAGTACCGAGGTCTTCAGAAGCAGCGGGAGCTCAGCGCGGACTCGACAATTGAGTCAGTCTTGGAAACAGCCATCTTCAAGGCTGGGGGCATTCTTGAGAGTAATTATGGGAAGCTGCAAAAAGTTGGCTGGGANAGGAGTAGTAGAACTGATAAAGGGAACGAACTAATTTCAGGTACATTCACTGGCCACAATGATCTCTCTGAAAATGGAAATCCCTGATCGAGCATGGGAGAATGATCCTGATGGCATTGCTCTTTCAACTTCATTAACTCAATTTGCCAGAAATGTTAGAGTTTTCAGTGTTTTGCCTGCTCAAGGAGTTCCCATGTGACGAGGAAAG]
[+] EMBL CA754674 [ACCGCCCGCGCCGCCGATGGCCGCCGCCGCCGCGGCGACGTGGCGCCTCTGGAGGCCCTACTCCTCCGCTCTCCTCTCTCGCCGGGTGAACCCGAGGTTCCTCCGTACTACGCCGTGCGTCTCCTACCCCGGCGGCGCCGCGGCTTCTGCGGCGCCACCCTCGCCTCCGCTTGCCACCACCTGCTCCGACGATTGGGGCGGCGGGATGAGGTGGGAGTCCGCGCGGAAGAAGAGGGTCGTGCTCCGCGTAGGCTACGTCGGCACGGAGTACCGAGGTCTTCAGAAGCAGCGGGAGCTCAGCGCGGACTCGACAATTGAGTCAGTCTTGGAAACAGCCATCTTCAAGGCTGGGGGCATTCTTGAGAGTAATTATGGGAAGCTGCAAAAAGTTGGCTGGGANAGGAGTAGTAGAACTGATAAAGGGAACGAACTAATTTCAGGTACATTCACTGGCCACAATGATCTCTCTGAAAATGGAAATCCCTGATCGAGCATGGGAGAATGATCCTGATGGCATTGCTCTTTCAACTTCATTAACTCAATTTGCCAGAAATGTTAGAGTTTTCAGTGTTTTGCCTGCTCAAGGAGTTCCCATGTGACGAGGAAAG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1101#0 TCTTCCATTCTGCTTGAACTACCGCCCGCGCCGCCGATGGCCGCCGCCGCCGCGGCGACG 60
consensus_1101#1 --------------------ACCGCCCGCGCCGCCGATGGCCGCCGCCGCCGCGGCGACG 40
****************************************
consensus_1101#0 TGGCGCCTCTGGAGGCCCTACTCCTCCGCTCTCCTCTCTCGCCGGGTGAACCCGAGGTTC 120
consensus_1101#1 TGGCGCCTCTGGAGGCCCTACTCCTCCGCTCTCCTCTCTCGCCGGGTGAACCCGAGGTTC 100
************************************************************
consensus_1101#0 CTCCGTACTACGCCGTGCGTCTCCTACCCCGGCGGCGCCGCGGCTTCTGCGGCGCCACCC 180
consensus_1101#1 CTCCGTACTACGCCGTGCGTCTCCTACCCCGGCGGCGCCGCGGCTTCTGCGGCGCCACCC 160
************************************************************
consensus_1101#0 TCGCCTCCGCTTGCCACCACCTGCTCCGACGATTGGGGCGGCGGGATGAGGTGGGAGTCC 240
consensus_1101#1 TCGCCTCCGCTTGCCACCACCTGCTCCGACGATTGGGGCGGCGGGATGAGGTGGGAGTCC 220
************************************************************
consensus_1101#0 GCGCGGAAGAAGAGGGTCGTGCTCCGCGTAGGCTACGTCGGCACGGAGTACCGAGGTCTT 300
consensus_1101#1 GCGCGGAAGAAGAGGGTCGTGCTCCGCGTAGGCTACGTCGGCACGGAGTACCGAGGTCTT 280
************************************************************
consensus_1101#0 CAGAAGCAGCGGGAGCTCAGCGCGGACTCGACAATTGAGTCAGTCTTGGAAACAGCCATC 360
consensus_1101#1 CAGAAGCAGCGGGAGCTCAGCGCGGACTCGACAATTGAGTCAGTCTTGGAAACAGCCATC 340
************************************************************
consensus_1101#0 TTCAAGGCTGGGGGCATTCTTGAGAGTAATTATGGGAAGCTGCAAAAAGTTGGCTGGGAA 420
consensus_1101#1 TTCAAGGCTGGGGGCATTCTTGAGAGTAATTATGGGAAGCTGCAAAAAGTTGGCTGGGAN 400
***********************************************************
consensus_1101#0 AGGAGTAGTAGAACTGATAAAGGG----------------GTACATTCACTGGCCACAAT 464
consensus_1101#1 AGGAGTAGTAGAACTGATAAAGGGAACGAACTAATTTCAGGTACATTCACTGGCCACAAT 460
************************ ********************
consensus_1101#0 GATCTCTCTGAAAATGGAAATCCCTGATCGAGCATGGGAGAATGATCCTGATGGCATTGC 524
consensus_1101#1 GATCTCTCTGAAAATGGAAATCCCTGATCGAGCATGGGAGAATGATCCTGATGGCATTGC 520
************************************************************
consensus_1101#0 TCTTTCAAACTTCATTAACTCAAATTTGCCAGACAATGTTAGAGTTTTCAGTGTTTTGCT 584
consensus_1101#1 TCTTTCAA-CTTCATTAACTCAA-TTTGCCAGA-AATGTTAGAGTTTTCAGTGTTTTGCC 577
******** ************** ********* *************************
consensus_1101#0 GCTCAAAGGAGTTTCGATGTGAGGAGGGAATGCTTGTATCGGGAATACTTGTATCTTCTT 644
consensus_1101#1 TGCTCAAGGAGTTCCCATGTGACGAGGAAAG----------------------------- 608
******** * ****** **** **
consensus_1101#0 CCTGCTGAAATAATTGGAATTAAAGGTGGTTGTAGCTCTGAAGAAGTAATGGAACACCTG 704
consensus_1101#1 ------------------------------------------------------------
consensus_1101#0 TCAGAATTCAATAGCATTCTGAAAGGTTTTGAGGGAAACCATCCATTTCATAATTACACT 764
consensus_1101#1 ------------------------------------------------------------
consensus_1101#0 GCTCGTGCCAAGTATAGGAAAGTTCTAGCAGGAAGGCATCGTAAGGTAAAAGGGGCAAGC 824
consensus_1101#1 ------------------------------------------------------------
consensus_1101#0 TCAGCTGTAAATTCCATGCCCACTGAAATGAGTTTGGACCAAAGCTCCTCTGATGACGGA 884
consensus_1101#1 ------------------------------------------------------------
consensus_1101#0 ACTACTTCAGACCATGATGAAGAAGACTTGAACTCTTCGTCGATAATTGGTTCTAGTGTA 944
consensus_1101#1 ------------------------------------------------------------
consensus_1101#0 CCAGAAGACAGTTATAAGGATAATCCCGAATTTTCTGAGAAGCAGGTTCAGATTCGAGCT 1004
consensus_1101#1 ------------------------------------------------------------
consensus_1101#0 AGGTGGCTTCATGAGCCTGATGAAAATGATCGACTGAATGCTTCACATTTCAGAGATATC 1064
consensus_1101#1 ------------------------------------------------------------
consensus_1101#0 CTCACATTCTCCTGTGGAGAGCTCCAGATTTCATCAGGAATTCAATTTGTGGAATTGACT 1124
consensus_1101#1 ------------------------------------------------------------
consensus_1101#0 ATATCAGGAGTATCTTTCATGCTGCATCAGATCCGGAAGATGGTTGGTACTTCGGTGGCG 1184
consensus_1101#1 ------------------------------------------------------------
consensus_1101#0 GTTAAGCGTGGATTACTACCCAAAGATATTATAGCACTGTCTCTTGCAAAGTTTTCTCGC 1244
consensus_1101#1 ------------------------------------------------------------
consensus_1101#0 ATTGTGTTACCAATTGCCCCTTCTGAAGTTTTGGTGCTTAGAGATAACAGTTTCTGCCTG 1304
consensus_1101#1 ------------------------------------------------------------
consensus_1101#0 AGGAACAAGCAAGGGACTATAGTTCGCCCTGGGATCCAATCAATGAATGAATCTGAAGAA 1364
consensus_1101#1 ------------------------------------------------------------
consensus_1101#0 GTCAAGAAGGGGGTAATGGAATTCTACAGGGCAGCTCTTGTTCCAGAGCTAGCAAACTTC 1424
consensus_1101#1 ------------------------------------------------------------
consensus_1101#0 CTGGATGCATCCATGCCTCCATGGAAAGAATGGGTGGAGAACTTGGACCGATTCACGAGC 1484
consensus_1101#1 ------------------------------------------------------------
consensus_1101#0 ATACCAGATCCACAGCTGGAGGAAGTTAGGAGCGCTTATAGGGTGTGGAAAGCGGACTAC 1544
consensus_1101#1 ------------------------------------------------------------
consensus_1101#0 GACCGAGTAAAAATGGCCAGAAAGAGTGCCAGCAGCGACTAATTTGTTGCCAAGCCCATC 1604
consensus_1101#1 ------------------------------------------------------------
consensus_1101#0 GCACAGTGAATGATGGGCTAAATAAAATTCTTAGCTGAAGAGAACCCCATGATTCTATCT 1664
consensus_1101#1 ------------------------------------------------------------
consensus_1101#0 CGGATATTTCTTCATACAGGAGCAGGAGCAGCCTGACTGTCGGGCAGAGCCTTGTTTTGA 1724
consensus_1101#1 ------------------------------------------------------------
consensus_1101#0 TCATGGCCAGTGAGCCATTGAGACTGAGCTATTGGTTGATCGGACTACTACAACCTTCAG 1784
consensus_1101#1 ------------------------------------------------------------
consensus_1101#0 ATTTGGTTCAATTGAATGTTTTTGCTTACCGTTTTGCCTAAGCCAATGTTATGTTGTATC 1844
consensus_1101#1 ------------------------------------------------------------
consensus_1101#0 CCGGCCACTGCAAAATCTTTGCAGAGCAATACTCTGATCAGTTGTTAAAGGAAAACCGAA 1904
consensus_1101#1 ------------------------------------------------------------
consensus_1101#0 GGTAGAAACATCGTTAATTATCTGACG 1931
consensus_1101#1 ---------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||