These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11019#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 1506 fasta sequence [AATCTCACCCATCGCCGACGACCCACGCACGCAGTCCACCAACGCGCCGCCGCCGCCGAATCCGCTTCGCTCCCTCCGCCGCGCCGCGCGCCACCTCCGTCGACGCTGGCCCGACGCGCGCGGTTCGTGAAGGAGGAGGAGGAGGAGGAGCTTCTGCCGGGTCGGACCGTCGGTTTCTCTCGTTGACCTGCAGGAGGGTGCGCAGGGTTTCTTCTTCGACATGTCTTGGGCTGCAATCGAGAATGATCCTGGCATTTTTACTGAACTGTTGCAACAGATGCAACTGAAGGGTCTTCAAGTTGATGAACTCTATTCACTCGATCTGGATGCCCTCAATGATCTTCAGCCAGTTTATGGGCTCATTGTGCTGTACAAATGGCAACCTCCAGAAAAAGATGAGCGTCCTATCAAGGACCCAATCCCAAACCTTTTCTTTGCTAAGCAGATAATTAACAATGCATGTGCCACCCAAGCTATCGTTTCTGTTCTATTAAACTCTCCGGGTATCACCCTTAGTGAGGAGCTCAAAAAGCTAAAGGAGTTTGCAAAGGACTTGCCACCAGATCTCAAAGGATTGGCTATAGTCAATTCTGAGAGCATCCGTTTGGCCAGTAATTCATTTGCAAGGCCGGAAGTCCCCGAGGAGCAGAAATCATCTGTCAAGGATGATGATGTCTACCATTTCATTAGCTATGTTCCTGTGGACGGTGTCCTGTATGAGCTTGATGGGCTAAAGGAAGGGCCAATAAGCCTGGGGAAATGCCCAGG-TGG-CG--TTGG-CGA-CA-TAGGTTGGCTGAGGATGGTGCAGCCTGTCATTCAGGAACGCATCGATCGGTTCTCTCAGAATGAGATAAGGTTCAGCGTCA-TGGCTATCCTA-A-AGAACCGGAGGGAGAAGTTCACTTTAGAACTCAAGGAGCTTCAGAGGAAGAGGGAGAACCT-CCTGGCACAGATGGGTGATCCTTCCGCC-AATAGGCACGCGCCATCTGTTGAGCACTCTCTTGCGGAGGTTGCTGCTCATATTGAGGCTGTAACAGAGAAGATCATAATGGAGGAAGA-GAAGTGGAAGAA-GTGGAAGACAGAGAACATCAGGAGGAAGCACAACTATGTGCCATTCTTG-TTCAATTTCCTCAAGATTCTTGAGGAGAGGCAGCAGTTGAAG-CCCCTGATAGAGAAGGCGAAACAGAAGTCTCACAGCTCTGCTAATCCTAGGTGAAATCAACTGTTATTTGTCTCGATTGCCGTGGTT-TTTGTCAATGTAGAGATGGCTGACTAGCCTTTTGTTTTCGCGGTAG-TGTTTGAACCATGTGATGATTATTATCTT-TAGTTATAGATATTCGGTCGAATTTAGATGAAATTCAGGCGAATGTCCCTTGAAATAGATTGTCTTATCAGAGTACATGTGTACACTGGAGGGTCATTCCCTATTGCATCCGAGTAGATCTTGTCCTTCCTTTGTCACATTATAAATAATGGAATTGACGGCCTAAAACCTCACATCATGCCATAATC] [+] EMBL AK104700 [AATCTCACCCATCGCCGACGACCCACGCACGCAGTCCACCAACGCGCCGCCGCCGCCGAATCCGCTTCGCTCCCTCCGCCGCGCCGCGCGCCACCTCCGTCGACGCTGGCCCGACGCGCGCGGTTCGTGAAGGAGGAGGAGGAGGAGGAGCTTCTGCCGGGTCGGACCGTCGGTTTCTCTCGTTGACCTGCAGGAGGGTGCGCAGGGTTTCTTCTTCGACATGTCTTGGGCTGCAATCGAGAATGATCCTGGCATTTTTACTGAACTGTTGCAACAGATGCAACTGAAGGGTCTTCAAGTTGATGAACTCTATTCACTCGATCTGGATGCCCTCAATGATCTTCAGCCAGTTTATGGGCTCATTGTGCTGTACAAATGGCAACCTCCAGAAAAAGATGAGCGTCCTATCAAGGACCCAATCCCAAACCTTTTCTTTGCTAAGCAGATAATTAACAATGCATGTGCCACCCAAGCTATCGTTTCTGTTCTATTAAACTCTCCGGGTATCACCCTTAGTGAGGAGCTCAAAAAGCTAAAGGAGTTTGCAAAGGACTTGCCACCAGATCTCAAAGGATTGGCTATAGTCAATTCTGAGAGCATCCGTTTGGCCAGTAATTCATTTGCAAGGCCGGAAGTCCCCGAGGAGCAGAAATCATCTGTCAAGGATGATGATGTCTACCATTTCATTAGCTATGTTCCTGTGGACGGTGTCCTGTATGAGCTTGATGGGCTAAAGGAAGGGCCAATAAGCCTGGGGAAATGCCCAGG TGG CG TTGG CGA CA TAGGTTGGCTGAGGATGGTGCAGCCTGTCATTCAGGAACGCATCGATCGGTTCTCTCAGAATGAGATAAGGTTCAGCGTCA TGGCTATCCTA A AGAACCGGAGGGAGAAGTTCACTTTAGAACTCAAGGAGCTTCAGAGGAAGAGGGAGAACCT CCTGGCACAGATGGGTGATCCTTCCGCC AATAGGCACGCGCCATCTGTTGAGCACTCTCTTGCGGAGGTTGCTGCTCATATTGAGGCTGTAACAGAGAAGATCATAATGGAGGAAGA GAAGTGGAAGAA GTGGAAGACAGAGAACATCAGGAGGAAGCACAACTATGTGCCATTCTTG TTCAATTTCCTCAAGATTCTTGAGGAGAGGCAGCAGTTGAAG CCCCTGATAGAGAAGGCGAAACAGAAGTCTCACAGCTCTGCTAATCCTAGGTGAAATCAACTGTTATTTGTCTCGATTGCCGTGGTT TTTGTCAATGTAGAGATGGCTGACTAGCCTTTTGTTTTCGCGGTAG TGTTTGAACCATGTGATGATTATTATCTT TAGTTATAGATATTCGGTCG ] [+] EMBL AK067359 [ CTCACCCATCGCCGACGACCCACGCACGCAGTCCACCAACGCGCCGCCGCCGCCGAATCCGCTTCGCTCCCTCCGCCGCGCCGCGCGCCACCTCCGTCGACGCTGGCCCGACGCGCGCGGTTCGTGAAGGAGGAGGAGGAGGAGGAGCTTCTGCCGGGTCGGACCGTCGGTTTCTCTCGTTGACCTGCAGGAGGGTGCGCAGGGTTTCTTCTTCGACATGTCTTGGGCTGCAATCGAGAATGATCCTGGCATTTTTACTGAACTGTTGCAACAGATGCAACTGAAGGGTCTTCAAGTTGATGAACTCTATTCACTCGATCTGGATGCCCTCAATGATCTTCAGCCAGTTTATGGGCTCATTGTGCTGTACAAATGGCAACCTCCAGAAAAAGATGAGCGTCCTATCAAGGACCCAATCCCAAACCTTTTCTTTGCTAAGCAGATAATTAACAATGCATGTGCCACCCAAGCTATCGTTTCTGTTCTATTAAACTCTCCGGGTATCACCCTTAGTGAGGAGCTCAAAAAGCTAAAGGAGTTTGCAAAGGACTTGCCACCAGATCTCAAAGGATTGGCTATAGTCAATTCTGAGAGCATCCGTTTGGCCAGTAATTCATTTGCAAGGCCGGAAGTCCCCGAGGAGCAGAAATCATCTGTCAAGGATGATGATGTCTACCATTTCATTAGCTATGTTCCTGTGGACGGTGTCCTGTATGAGCTTGATGGGCTAAAGGAAGGGCCAATAAGCCTGGGGAAATGCCCAGG TGG CG TTGG CGA CA TAGGTTGGCTGAGGATGGTGCAGCCTGTCATTCAGGAACGCATCGATCGGTTCTCTCAGAATGAGATAAGGTTCAGCGTCA TGGCTATCCTA A AGAACCGGAGGGAGAAGTTCACTTTAGAACTCAAGGAGCTTCAGAGGAAGAGGGAGAACCT CCTGGCACAGATGGGTGATCCTTCCGCC AATAGGCACGCGCCATCTGTTGAGCACTCTCTTGCGGAGGTTGCTGCTCATATTGAGGCTGTAACAGAGAAGATCATAATGGAGGAAGA GAAGTGGAAGAA GTGGAAGACAGAGAACATCAGGAGGAAGCACAACTATGTGCCATTCTTG TTCAATTTCCTCAAGATTCTTGAGGAGAGGCAGCAGTTGAAG CCCCTGATAGAGAAGGCGAAACAGAAGTCTCACAGCTCTGCTAATCCTAGGTGAAATCAACTGTTATTTGTCTCGATTGCCGTGGTT TTTGTCAATGTAGAGATGGCTGACTAGCCTTTTGTTTTCGCGGTAG TGTTTGAACCATGTGATGATTATTATCTT TAGTTATAGATATTCGGTCGAATTTAGATGAAATTCAGGCGA ] [+] EMBL CA999849 [ CGACATGTCTTGGGCTGCAATCGAGAATGATCCTGGCATTTTTACTGAACTGTTGCAACAGATGCAACTGAAGGGTCTTCAAGTTGATGAACTCTATTCACTCGATCTGGATGCCCTCAATGATCTTCAGCCAGTTTATGGGCTCATTGTGCTGTACAAATGGCAACCTCCAGAAAAAGAT ] [-] EMBL CB678556 [ TGTTCATGTGGACGGTGTCCTGTATGAGCTTGATGGGATAAAGGAAGGGCCAATAAGCCTGGGGAAATGCCCAGG TGG CG TTGG CGA CA TAGGTTGGCTGAGGATGGTGCAGCCTGTCATTCAGGAACGCATCGATCGGTTCTCTCAGAATGAGATAAGGTTCAGCGTCACTGGCTATCCTA A AGAACCGGAGGGAGAAGTTCACTTTAGAACTCAAGGAGCTTCAGAGGAAGAGGGAGAACCT CCTGGCACAGATGGGTGATCCTTCCGCC AATAGGCACGCGCCATCTGTTGAGCACTCTCTTGCGGAGGTTGCTGCTCATATTGAGGCTGTAACAGAGAAGATCATAATTGAGGAAGA GAAGTGGAAGAA GTGGAAGACAGAGAACATCAGGAGGAAGCTCAACTATGTGCCATTCTTG TTCAATTTCCTCAAGATTCTTGAGGAGAGGCAGCAGTTGAAG CCCCTGATAGAGAAGGCGAAACAGAAGTCTCACAGCTCTGATAATCCTAGGTGAAATCAACTGTTATTTGTCTAGATTGCCGTGGTT TTTGTCAATGTAGAGATGGCTGACTAACCTTTTGTTTTCGCGGTAG TGTTTGATCCATGTGATGATTATTATCTT TAGTTATAGATATTCGGTAGAATTTAGATGAAATTCAGGTGAATGTCCCTTGAAATAGATTGTCTTATCAGAGTACATGTGTACACTGGAGGGTCATTCCCTATTGCATCCGAGTAGATCTTGTCCTTCCTTTGTCACATTATAAATAATGGAATTGACGGCCTAAAACCTCACATCATGCCATAATC] [+] EMBL BM419347 [ CCAGGTTGGCCGTTTTGGTTGACCATTAGGTTTGCTGAGGATGGTGCACCCTGTCATTCAG ACGCATCGATCGGTTCTCTCAGAATGAGATAAGGTTCAGCGTCA TGGCTATCCTATATAGAACCGGAGGGAGAAGTTCACTTTAGAACTCAAGGAGCTTCAGAGGAAGAGGGAGAACCT CCTGGCACAGATGGGTGATCCTTCCGCC AATAGGCACGCGCCATCTGTTGAGCACTCTCTTGCGGAGGTTGCTGCTCATATTGAGGCTGTAACAGAGAAGATCATAATGGAGGAAGA GAAGTGGAAGAA GTGGAAGACAGAGAACATCAGGAGGAAGCACAACTATGTGCCATTCTTG TTCAATTTCCTCAAGATTCTTGAGGAGAGGCAGCAGTTGAAG CCCCTGATAGAGAAGGCGAAACAGAAGTCTCACAGCTCTGCTAATCCTAGGTGAAATCAACTGTTATTTGTCTCGATTGCCGTGGTT TTTGTCAATGTAGAGATGGCTGACTAGCCTTTTGTTTTCGCGGTAG TGTTTGAACCATGTGATGATTATTATCTT TAGTTATNGATATTCGGTCGAATTTAGATGAAAaaaaa ] [+] EMBL OSC25452 [ CTTCAGAGGAAGAGGGAGAACCT CCTGGCACAGATGGGTGATCCTTCCGCC AATAGGCACGCGCCATCTGTTGAGCACTCTCTTGCGGAGGTTGCTGCTCATATTGAGGCTGTAACAGAGAAGATCATAATGGAGGAAGA GAAGTGGAAGAA GTGGAAGACAGAGAACATCAGGAGGAAGCACAACTATGTGCCATTCTTG TTCAATTTCCTCAAGATTCTTGAGGAGAGGCAGCAGTTGAAG CCCCTGATAGAGAAGGCGAAACAGAAGTCTCACAGCTCTGCTAATCCTAGGTGAAATCAACTGTTAT ] [+] EMBL BQ906595 [ GAGAACCTCCCTGGCACANATGGGTGATCCTTCCGCCAAATAGGCACGCGCCATCTGTTGAGCACTCTCTTGCGGAGGTT CTGCTCATATTGAGGCTGTAACAGAGAAGATCATAATGGAGGAAGACGAAGTGGAAGAACGTGGAAGACAGAGAACATCAGGAGGAAGCACAACTATGTGCCATTCTTGCTTCAATTTCCTCAAGATTCTTGAGGAGAGGCA CAGTTGAAGCCCCCTGATAGAGAAGGCGAAACAGAAGTCTCACAGCTCTGCTAATCCTAGGTGAAATCAACTGTTATTTGTCTCGA TCCCGTGGTTCTTTGTCAATGTAGAGATGGCTGACTAGCCTTTGGTTTTCGCGGTAGCTGTTTGAACCATGTGATGATTATTATCTTCTAGTTATAGATATTCGGTCGAATTTAGATGAAATTCAGGCGAATGT CCTTGAAATAGACTGTCTTATCAGACTACATGTGTACACTGGAGGGTCATTTCCTA TGCATCCGGGTAGATCTTGTCCTTCCTTGGTCACATTATAAATAATCTCCCTCNCGG CTAAAGCCTCACATCAaaaaaaa ] [+] EMBL AU160972 [ CATCTGTTGAGCACTCTCTTGCGGAGGTTGCTGCTCATATTGAGGCTGTAACAGAGAAGATCATAATGGAGGAAGA GAAGTGGAAGAA GTGGAAGACAGAGAACATCAGGAGGAAGCACAACTATGTGCCATTCTTG TTCAATTTCCTCAAGATTCTTGAGGAGAGGCAGCAGTTGAAG CCCCTGATAGAGAAGGCGAAACAGAAGTCTCACAGCTCTGCTAATCCTAGGTGAAATCAACTGTTATTTGTCTCGATTGCCGTGGTT TTTGTCAATGTAGAGATGGCTGACTAGCCTTTTGTTTTCGCGGTAG TGTTTGAACCATGTGATGATTATTATCTT TAGTTATAGATATTCGGTCGAATTTAGATGAAATTCAGGCGAAT ] clustalw multiple alignements is not computed in this case |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||