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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11024#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1160 fasta sequence
[TCTCCTCTTCTTCTTCTCTTCTTCCTTCCTCTCCCAACACCAAAACCCAAGAACCCCACAAGTGCGGGCGAGGAGGGGAGGGAGGCATTAATGGAGCCCTCTACCAAGCAGCTCCTCCCCATGCCTCAGCAAGACCCCAACTCGCCGTCGTCTTCCACCTCGTCGTCGTCGTCGTCCTCCACCTCGCCGTCTCACCCGCACCACCGTGCACCACTTCCACCGTCGCCTAGGCCCGTCCCCCGCACCATCGAGACCACCCCCTTCCCCACCACCTTCGTGCAGGCCGACACCGCCTCCTTCAAGCAGGTCGTGCAGATGCTCACCGGCGCCGAGCAACCCTCCAAGAACGCCGCCACAGCAGCGACAGCGGCCGCGGGGAACAGCAGCGCCGCCGGGATTGGTGGCGGGCAGGGGGCAAACGGGCCGTGCCGTCCCAAGAAGCCGGCTTTCAAGCTGTACGAGCGGCGGAGCAGCCTCAAGAACCTCAAGATGATCGCGCCGCTGGCGATGGGGGCGCTGCCGTCGCCGACCGGCAGGAAGGTCGGCACGCCGGAGATCCTGTCGCCGAGCGTGCTGGACTTCCCGTCGCTCAAGCTCAGCCCGGTCACGCCGCTCACCGGCGAGCCCTTCAACCGCTCGCCGGCCTCGTCCTCCGAGGACGCCGAGCGCGCCGCCATATCCGAGAGGGGGTTCTTCCTCCACCCCTCGCCGCGTGGCGCCGAGCCGCCGCGCCTCCTCCCGCTCTTC-CCGGTC-ACCTCGCCAAGGAT-GGCCGCGCCTTCCGAGTGAGTGACCCAAAAGCTCCCGCCTTTGCGCGCGCCTCAACTATATCAAGTAATCGACGA-CGAGTACAACTACTGCTACTACCGCTCTCGCTGTACCGTTTCTCTTCGCAGTTCTAGTTTTGTGGTTGTTGTTCTTGATCTGCTGCTGCTGCTGCTGTAATTTTTGCCCCCTTCTCGAAATGAAGAAGGGAGTTTC-TTTTTTTTCTTCTTTGGAGTAGTGACCAGTGAGCGATTGTATAATCCGAGCTCTAGATTTCGGCTTCGGTTTCTTGATCGCTCGCTGGGGACTCCGAAAGGATGGATCAATCGATTAATTAAGCTTAATTTTGAGCTTGGTGTTCTAAAAAAAAAAAAAAAAAAACCAAACTAAAAAAAAAA]
[+] EMBL AK073166 [TCTCCTCTTCTTCTTCTCTTCTTCCTTCCTCTCCCAACACCAAAACCCAAGAACCCCACAAGTGCGGGCGAGGAGGGGAGGGAGGCATTAATGGAGCCCTCTACCAAGCAGCTCCTCCCCATGCCTCAGCAAGACCCCAACTCGCCGTCGTCTTCCACCTCGTCGTCGTCGTCGTCCTCCACCTCGCCGTCTCACCCGCACCACCGTGCACCACTTCCACCGTCGCCTAGGCCCGTCCCCCGCACCATCGAGACCACCCCCTTCCCCACCACCTTCGTGCAGGCCGACACCGCCTCCTTCAAGCAGGTCGTGCAGATGCTCACCGGCGCCGAGCAACCCTCCAAGAACGCCGCCACAGCAGCGACAGCGGCCGCGGGGAACAGCAGCGCCGCCGGGATTGGTGGCGGGCAGGGGGCAAACGGGCCGTGCCGTCCCAAGAAGCCGGCTTTCAAGCTGTACGAGCGGCGGAGCAGCCTCAAGAACCTCAAGATGATCGCGCCGCTGGCGATGGGGGCGCTGCCGTCGCCGACCGGCAGGAAGGTCGGCACGCCGGAGATCCTGTCGCCGAGCGTGCTGGACTTCCCGTCGCTCAAGCTCAGCCCGGTCACGCCGCTCACCGGCGAGCCCTTCAACCGCTCGCCGGCCTCGTCCTCCGAGGACGCCGAGCGCGCCGCCATATCCGAGAGGGGGTTCTTCCTCCACCCCTCGCCGCGTGGCGCCGAGCCGCCGCGCCTCCTCCCGCTCTTC CCGGTC ACCTCGCCAAGGAT GGCCGCGCCTTCCGAGTGAGTGACCCAAAAGCTCCCGCCTTTGCGCGCGCCTCAACTATATCAAGTAATCGACGA CGAGTACAACTACTGCTACTACCGCTCTCGCTGTACCGTTTCTCTTCGCAGTTCTAGTTTTGTGGTTGTTGTTCTTGATCTGCTGCTGCTGCTGCTGTAATTTTTGCCCCCTTCTCGAAATGAAGAAGGGAGTTTC TTTTTTTTCTTCTTTGGAGTAGTGACCAGTGAGCGATTGTATAATCCGAGCTCTAGATTTCGGCTTCGGTTTCTTGATCGCTCGCTGGGGACTCCGAAAGGATGGATCAATCGATTAATTAAGCTTAATTTTGAGCTTGGTGTTCTAA ]
[+] EMBL BE041073 [ TCCACCCCTCGCCGCGTGGCGCCGAGCCGCCGCGCCTCCTCCCGCTCTTC CCGGTC ACCTCGCCAAGGAT GGCCGCGCCTTCCGAGTGAGTGACCCAAAAGCTCCCGCCTTTGCGCGCGCCTCAACTATATCAAGTAATCGACGA CGAGTACAACTACTGCTACTACCGCTCTCGCTGTACCGTTTCTCTTCGCAGTTCTAGTTTTGTGGTTGTTGTTCTTGATCTGCTGCTGCTGCTGCTGTAATTTTTGCCCCCTTCTCGAAATGAATAAGGGAGTTTCTTTTTTTTTCTTCTTTGGAGTAGTGACCAGTGAGCGATTGTATAATCCGAGCTCTAGATTTCGGCTTCGGTTTCTTGATCGCTCGCTGGGGACTCCGAAAGGATGGATCAATCGATTAATTAAGCTTAATTTTGAGCTTGGTGTTCTAAAAAAAAAAAAAAAAAAACCAAACTAAAAAAAAAA]
[+] EMBL BE041090 [ TCCACCCCTCGCCGCGTGGCGCCGAGCCGCCGCGCCTCCTCCCGCTCTTC CCGGTC ACCTCGCCAAGGAT GGCCGCGCCTTCCGAGTGAGTGACCCAAAAGCTCCCGCCTTTGCGCGCGCCTCAACTATATCAAGTAATCGACGA CGAGTACAACTACTGCTACTACCGCTCTCGCTGTACCGTTTCTCTTCGCAGTTCTAGTTTTGTGGTTGTTGTTCTTGATCTGCTGCTGCTGCTGCTGTAATTTTTGCCCCCTTCTCGAAATGAAGAAGGGAGTTTCTTTTTTTTTCTTCTTTGGAGTAGTGACCAGTGAGCGATTGTATAATCCGAGCTCTAGATTTCGGCTTCGGTTTCTTGATCGCTCGCTGGGGACTCCGAAAGGATGGATCAATCGATTAATTAAGCTTAATTCTGAGCTTGGTGTTCTAAAAAAAAAAAATAAAAAACCCATTTATAAAAAA ]
[+] EMBL CF589224 [ ccgaGCGCGCCGCCGAGCCGCCGCGCCTCCTCCCGCTCTTC CCGGTC ACCTCGCCAAGGAT GGCCGCGCCTTCCGAGTGAGTGACCCAAAAGCTCCCGCCTTTGCGCGCGCCTCAACTATATCAAGTAATCGACGA CGAGTACAACTACTGCTACTACCGCTCTCGCTGTACCGTTTCTCTTCGCAGTTCTAGTTTTGTGGTTGTTGTTCTTGATCTGCTGCTGCTGCTGCTGTAATTTTTGCCCCCTTCTCGAAATGAAGAAGGGAGTTTC TTTTTTTTCTTCTTTGGAGTAGTGACCAGTGAGCGATTGTATAATCCGAGCTCTAGATTTCGGCTTCGGTTTCTTGATCGCTCGCTGGGGACTCCGAAAGGATGGATCAATCGATTAATTAAGCTTAATTTTGAGC ]
[+] EMBL AU032882 [ gCGAACCGCCACGCCTCCTCCCGCTCTTCNCGGGTCAACCNCGCCAAGGATGGGCCCCGCCTNCCGAGTGAGTGACCNAAAAACTCCCGCCTTTTCGCNCGCCTCAACTATATCAAGTAATCGACGACCGAGTACAACTACTGCTACTANCGCTCTCGCTGTACCGTTTCTCTTCGCAGTTCTAGTTTTGTGGTTGTTGTTCTTGATCTGCTGCTGCTGCTGCTGTAATTTTTGCCCCCTTCTCGAAATGAAGAAGGGAGTTTC TTTTTTTTCTTCTTTGGAGTAGTGACCAGTGAGCGATTGTATAATCCGAGCTCTAGATTTCGGCTTCGGTTTCTTGATCGCTCGCTGGGGACTCCGAAAGGATGGATCAATCGATTAATTAAGCTTAATTTTGAaaa ]
consensusID : consensus_11024#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 435 fasta sequence
[CTCCTCCCGTCCATGGCGCACGACCCAAACTCCCCGTCCTCCTCCACCTCCTCCTCCTCCCCATCCTCCGCCGCCGCCGCCGCCTCCTCTTCGCCGTCGTCCCACCGCCCGCCGCCGCCGCCGCCGTCGTCGTCGTCACAACCCGCCCTCCCGCCTTCCCCGAGGACCGTCGTCCCGCGCACCATCGACACCACCCCGTTCCCCACCACCTTCGTCCAGGCCGACACCGCCTCCTTCAAGCAGGTCGTCCAGATGCTCACCGGCTCCGACACCACGCCGCCGTCACAGAGGCCGCCGGCCAAGAGCAACCACCACCAGCACCACCACAGCGGCGCGCCATGCCGGCCCAAGAAGCAGGCGTTCAAGCTGTACGAGCGCCGGAGCGGCGTCCACAAGAACTTAAAGATGATCGCGCCGTTGGCGATGGCGGCGGCC]
[+] EMBL AU184804 [CTCCTCCCGTCCATGGCGCACGACCCAAACTCCCCGTCCTCCTCCACCTCCTCCTCCTCCCCATCCTCCGCCGCCGCCGCCGCCTCCTCTTCGCCGTCGTCCCACCGCCCGCCGCCGCCGCCGCCGTCGTCGTCGTCACAACCCGCCCTCCCGCCTTCCCCGAGGACCGTCGTCCCGCGCACCATCGACACCACCCCGTTCCCCACCACCTTCGTCCAGGCCGACACCGCCTCCTTCAAGCAGGTCGTCCAGATGCTCACCGGCTCCGACACCACGCCGCCGTCACAGAGGCCGCCGGCCAAGAGCAACCACCACCAGCACCACCACAGCGGCGCGCCATGCCGGCCCAAGAAGCAGGCGTTCAAGCTGTACGAGCGCCGGAGCGGCGTCCACAAGAACTTAAAGATGATCGCGCCGTTGGCGATGGCGGCGGCC]
[+] EMBL AU076228 [CTCCTCCCGTCCATGGCGCACGACCCAAACTCCCCGTCCTCCTCCACCTCCTCCTCCTCCCCATCCTCCGCCGCCGCCGCCGCCTCCTCTTCGCCGTCGTCCCACCGCCCGCCGCCGCCGCCGCCGTCGTCGTCGTCACAACCCGCCCTCCCGCCTTCCCCGAGGACCGTCGTCCCGCGCACCATCGACACCACNCCGTTCCCCACCACCTTCGTCCAGGCCGACACCGCCTCCTTCAAGCAGGTCGTCCAGATGCTCACCGGCTCCGACACCACGCCGCCGTCACAGAGGCCGCCGGCCAAGAGCAACCACCACCAGCACCACCACAGCGGCGCGCCATGCCGGCCCAAGAAGCAGGCGTTCAAGCTGTACGAGCGCCGGAGCGGCGTCCACAAGAACTTCAAGATGATCGCGCCGct ]
[+] EMBL AU091464 [ CGCCGCCGCCGCCGCCTCCTCTTCGCCGTCGTCCCACCGCCCGCCGCCGCCGCCGCCGTCGTCGTCGTNACAACCCGNCTTCCCGCCTTCCCCGAGGACCGTCGTCCCGCGCACCATCGACACCACCCCGTTCCCCACCACCTTCGTCCAGGCCGACACCGCCTCCTTCAAGCNGGTCGTCCAGATGCTCACCGGCTCCGACACCACGCCGCCGTCACAGA GCCGCCGGCCAAGAGCAACCACCACCAGCACCACCACAGCGGCGCGCCATGCCGGCCCAAGAAGCAGGCGTTCAAGCTGTACGAGC CCGGAGCGGCGTCCACAAGAACT ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_11024#0 TCTCCTCTTCTTCTTCTCTTCTTCCTTCCTCTCCCAACACCAAAACCCAAGAACCCCACA 60
consensus_11024#1 ------------------------------------------------------------
consensus_11024#0 AGTGCGGGCGAGGAGGGGAGGGAGGCATTAATGGAGCCCTCTACCAAGCAGCTCCTCCCC 120
consensus_11024#1 -------CTCCTCCCGTCCATGGCGCACGACCCAAACTCCCCGTCCTCCTCCACCTCCTC 53
* * *** * * * * * * * * ***** *
consensus_11024#0 ATGCCTCAGCAAGACCCCAACTCGCCGTCGTCTTCCACCTCGTCGTCGTC--GTCGTCCT 178
consensus_11024#1 CT-CCTCCCCATCCTCCGCCGCCGCCGCCG-CCTCCTCTTCGCCGTCGTCCCACCGCCCG 111
* **** ** ** ***** ** * *** * *** ******* ** **
consensus_11024#0 CCACC-TCGCCGTC-TCACCCGCACCACCGTGCACCACTTCCACCGTCGCCTAGGCCCGT 236
consensus_11024#1 CCGCCGCCGCCGCCGTCGTCGTCGTCACAACCCGCC-CTCCCGCCTTCCCCGAGGACCGT 170
** ** ***** * ** * * *** * ** ** ** ** ** ** *** ****
consensus_11024#0 C---CCCCGCACCATCGAGACCACCCCCTTCCCCACCACCTTCGTGCAGGCCGACACCGC 293
consensus_11024#1 CGTCCCGCGCACCATCGACACCACCCCGTTCCCCACCACCTTCGTCCAGGCCGACACCGC 230
* ** *********** ******** ***************** **************
consensus_11024#0 CTCCTTCAAGCAGGTCGTGCAGATGCTCACCGGCGCCGAGCAACCCTCCAAGAACGCCGC 353
consensus_11024#1 CTCCTTCAAGCAGGTCGTCCAGATGCTCACCGGCTCCGA------CACCACGC-CGCCGT 283
****************** *************** **** * *** * *****
consensus_11024#0 CACAGCAGCGACAGCGGCCGCGGGGAACAGCAGCGCCGCCGGGATTGGTGGCGGGCAGGG 413
consensus_11024#1 CACAGAGGC--CGCCGGCCAAGAGCAAC-----CACCACCAGCACCACCA-----CAGCG 331
***** ** * ***** * * *** * ** ** * * *** *
consensus_11024#0 GGCAAACGGGCCGTGCCGTCCCAAGAAGCCGGCTTTCAAGCTGTACGAGCGGCGGAGCAG 473
consensus_11024#1 G-----CGCGCCATGCCGGCCCAAGAAGCAGGCGTTCAAGCTGTACGAGCGCCGGAGCGG 386
* ** *** ***** ********** *** ***************** ****** *
consensus_11024#0 CCTC---AAGAACCTCAAGATGATCGCGCCGCTGGCGATGGGGGCGCTGCCGTCGCCGAC 530
consensus_11024#1 CGTCCACAAGAACTTAAAGATGATCGCGCCGTTGGCGATGGCGGCG--GCC--------- 435
* ** ****** * *************** ********* **** ***
consensus_11024#0 CGGCAGGAAGGTCGGCACGCCGGAGATCCTGTCGCCGAGCGTGCTGGACTTCCCGTCGCT 590
consensus_11024#1 ------------------------------------------------------------
consensus_11024#0 CAAGCTCAGCCCGGTCACGCCGCTCACCGGCGAGCCCTTCAACCGCTCGCCGGCCTCGTC 650
consensus_11024#1 ------------------------------------------------------------
consensus_11024#0 CTCCGAGGACGCCGAGCGCGCCGCCATATCCGAGAGGGGGTTCTTCCTCCACCCCTCGCC 710
consensus_11024#1 ------------------------------------------------------------
consensus_11024#0 GCGTGGCGCCGAGCCGCCGCGCCTCCTCCCGCTCTTCCCGGTCACCTCGCCAAGGATGGC 770
consensus_11024#1 ------------------------------------------------------------
consensus_11024#0 CGCGCCTTCCGAGTGAGTGACCCAAAAGCTCCCGCCTTTGCGCGCGCCTCAACTATATCA 830
consensus_11024#1 ------------------------------------------------------------
consensus_11024#0 AGTAATCGACGACGAGTACAACTACTGCTACTACCGCTCTCGCTGTACCGTTTCTCTTCG 890
consensus_11024#1 ------------------------------------------------------------
consensus_11024#0 CAGTTCTAGTTTTGTGGTTGTTGTTCTTGATCTGCTGCTGCTGCTGCTGTAATTTTTGCC 950
consensus_11024#1 ------------------------------------------------------------
consensus_11024#0 CCCTTCTCGAAATGAAGAAGGGAGTTTCTTTTTTTTCTTCTTTGGAGTAGTGACCAGTGA 1010
consensus_11024#1 ------------------------------------------------------------
consensus_11024#0 GCGATTGTATAATCCGAGCTCTAGATTTCGGCTTCGGTTTCTTGATCGCTCGCTGGGGAC 1070
consensus_11024#1 ------------------------------------------------------------
consensus_11024#0 TCCGAAAGGATGGATCAATCGATTAATTAAGCTTAATTTTGAGCTTGGTGTTCTAAAAAA 1130
consensus_11024#1 ------------------------------------------------------------
consensus_11024#0 AAAAAAAAAAAAACCAAACTAAAAAAAAAA 1160
consensus_11024#1 ------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||