cluster # 11031

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Oryza sativa
cluster # 11031 cluster # 11031 Sequences # 8 consensus # 4

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_11031#0 length = 1646 sequences # 5
consensus_11031#1 length = 563 sequences # 1

consensus_11031#2 length = 441 sequences # 1
consensus_11031#3 length = 440 sequences # 1

consensusID : consensus_11031#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 1646
fasta sequence

                              [GAGACGCTTCCAACCCTAATCCCCCCAACACCATCAACGGATCCACCCACTGGTTGTCCGCCTGCTTCTCCCCGCCCCAATCCACCTTAGGAATAGCGCCTGGCTGGATCCCAGGCCGTTTGCTTGTTTGCGTCCGGAGATTGGAGCGCCGATTGGGATGAAACCGATCGGCCCTTAATGTTTATTTTTCCCCATCACTCGATTGTATTTGTTGCCTCCGAGAGATTCTGTGCTGTTACTGAATCCAATTTTCGTGTGATTTTTGGCAGGGGATTCTGAGATATGGCCTTCTTGCGGAAGGTTGGGAACCTCGTCAGGCAGTCCGCAGGCTCGGGCTCGCCGCTGTTCCAGGCGGTCCGATGCATGTCCTCCTCGAAGCTCTTCATCGGAGGAATCTCTTATGGTACTGATGACCAGAGTCTGAAGGAAGCGTTTGCTAACTACGGTGAAGTCATTGAAGCTAGGGTGATTGTGGACCGTACCACTGGACGGTCGAGGGGATTTGGTTTTGTAACCTACACATCCACGGATGAGGCTGCAGCTGCCATTACTGGCATGGACGGGAAGGATCTGCAGGGCCGGATTGTGCGGGTGAGTTATGCTCATGACCGTGGTAGCCGTGCTGGTGGCTATGGTGGTGGAGGCTACAGTGGACAGGGTACGTATGGTGGTGGCGGTGGCTATGGAGGTGGAGGCTATGGTGGACAGGATGCATATGGTGGTCGTGGTGTTGGAGGCTATAGTGAGGGTGGCCGTGGGTATGTTGGTGGTGGATACGGTGACGGTAACAATTACGGTGGGTATAACACAAGTGGTGGATATAATTCTGAAGGTGGGCGTGGTGGCTATAGTGTTTTTGAAGGTGGACATGGCTACGGTAGTGGCGGTACTGGTTACACAGGAGGCAGCGGCGGATATAATTCGGCCCCTGGAAATTACAGCAGTGACAACTTCAATCAAGGGGGTGCAGCACCTGGTGCATATGAAGGTGC-AAACTACGGTGGAGGCAACAACTACATGAACAATGCAACCAGTGATGATTCCACCGGTAAGCTGGACGAGTTGTTAAATGATCTTAAAGTTGATGGTGATGGCAAAGAGGATGGTGAGGGCAAAGCGGATGGCGCTGGCCTGGTTAATGAGGATCTGAAAGGAGATGATGGTCAGGATGAATTGCTTCAGAATGATTTCAAAGATGAAGATGTGTCTGATGACTATGCCAACAAAAGACGTTAAAGTTCGCTCGACCATGAAGTCCAGTCCGGTAACTTTT-CATGTGTTGCCGATGGAGGTGCTCTCCACAATCGCGAAATCCAAAGTTAAGACAACGTCCTGTATGCAAATAAGTTTCGT-GTTGTAGCCATATATGCTGGACCATCGGGACTCTTTCGATATGCGGTCATTCAAAACCTGGATTAGTATGGATTCACTGCACTACAATCGCATCCTCTGTGGATAATCCATTGTTGCTCGGCTGCTCTCTTTGGATACAATCTACTGATAGACACTCCCTCCGAAGTCCGACCGTGTTATTC-TTTTTTGGGTTAATTGGATCCATGCCATTATAAATTTTTGAGTTTTGAAGTATACCATTACAATTCATCTATTTGCAATGATACCATTGCAATTTTACAGCTAAAAAAAAA]

[+] EMBL AK072673             [GAGACGCTTCCAACCCTAATCCCCCCAACACCATCAACGGATCCACCCACTGGTTGTCCGCCTGCTTCTCCCCGCCCCAATCCACCTTAGGAATAGCGCCTGGCTGGATCCCAGGCCGTTTGCTTGTTTGCGTCCGGAGATTGGAGCGCCGATTGGGATGAAACCGATCGGCCCTTAATGTTTATTTTTCCCCATCACTCGATTGTATTTGTTGCCTCCGAGAGATTCTGTGCTGTTACTGAATCCAATTTTCGTGTGATTTTTGGCAGGGGATTCTGAGATATGGCCTTCTTGCGGAAGGTTGGGAACCTCGTCAGGCAGTCCGCAGGCTCGGGCTCGCCGCTGTTCCAGGCGGTCCGATGCATGTCCTCCTCGAAGCTCTTCATCGGAGGAATCTCTTATGGTACTGATGACCAGAGTCTGAAGGAAGCGTTTGCTAACTACGGTGAAGTCATTGAAGCTAGGGTGATTGTGGACCGTACCACTGGACGGTCGAGGGGATTTGGTTTTGTAACCTACACATCCACGGATGAGGCTGCAGCTGCCATTACTGGCATGGACGGGAAGGATCTGCAGGGCCGGATTGTGCGGGTGAGTTATGCTCATGACCGTGGTAGCCGTGCTGGTGGCTATGGTGGTGGAGGCTACAGTGGACAGGGTACGTATGGTGGTGGCGGTGGCTATGGAGGTGGAGGCTATGGTGGACAGGATGCATATGGTGGTCGTGGTGTTGGAGGCTATAGTGAGGGTGGCCGTGGGTATGTTGGTGGTGGATACGGTGACGGTAACAATTACGGTGGGTATAACACAAGTGGTGGATATAATTCTGAAGGTGGGCGTGGTGGCTATAGTGTTTTTGAAGGTGGACATGGCTACGGTAGTGGCGGTACTGGTTACACAGGAGGCAGCGGCGGATATAATTCGGCCCCTGGAAATTACAGCAGTGACAACTTCAATCAAGGGGGTGCAGCACCTGGTGCATATGAAGGTGC AAACTACGGTGGAGGCAACAACTACATGAACAATGCAACCAGTGATGATTCCACCGGTAAGCTGGACGAGTTGTTAAATGATCTTAAAGTTGATGGTGATGGCAAAGAGGATGGTGAGGGCAAAGCGGATGGCGCTGGCCTGGTTAATGAGGATCTGGAAGGAGATGATGGTCAAGATGAATTGCTTCAGAATGATTTCAAAGATGAAGATGTGTCTGATGACTATGCCAACAAAAGACGTTAAAGTTCGCTCGACCATGAAGTCCAGTCCGGTAACTTTT CATGTGTTGCCGATGGAGGTGCTCTCCACAATCGCGAAATCCAAAGTTAAGACAACGTCCTGTATGCAAATAAGTTTCGT GTTGTAGCCATATATGCTGGACCATCGGGACTCTTTCGATATGCGGTCATTCAAAACCTGGATTAGTATGGATTCACTGCACTACAATCGCATCCTCTGTGGATAATCCATTGTTGCTCGGCTGCTCTCTTTGGATACAATCTACTGATAGACACTCCCTCCGAAGTCCGACCGTGTTATTCTTTTTTTGGGTTAATTGGATCCATGCCATTATAAATTTTTGAGTTTTGAAGTATACCATTACAATTCATCTATTTGCAATGATACCATTGCAATTTTACA            ]
[+] EMBL C74195               [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    GATGCATATGGTGGTCGTGGTGTTGGAGGCTATAGTGAGGGTGGCCGTGGGTATGTTGGTGGTGGATACGGTGACGGTAACAATTACGGTGGGTATAACACAAGTNGTGGATATAATTCTGAAGGTGGGCGTNGTGGCTATAGTGTTTTTGAAGGTGGACATGGCTACGGTAGTNGCGGTACTGGTTACACAGGAGGCAGCNGCGGATATAATTCGG CCCTGGAAAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL C99041               [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   GAAATTACAGCAGTGACAACTTCAATCAAGGGGGTGCAGCACCTGGTGCATATGAAGGTGC AAACTACGGTGGAGGCAACAACTACATGAACAATGCAACCAGTGATGATTCCACCGGTAAGCTGGACGAGTTGTTAAATGATCTTAAAGTTGATGGTGATGGCAAAGAGGATGGTGAGGGCAAAGCGGATGGCGCTGGCCTGGTTAATGAGGATCTGAAAGGAGATGATGGTCAGGATGAATTGCTTCAGAATGATTTCAAAGATGAAGATGTGTCTGATGACTATGCCAACAAAAGACGTTAAAGTTCGCTCGACCATGAAGTCCAGTCCGGTAACTTTTCCATGTGTTGCCGATGGAGGTGCTCTCCACAATCGCGAAATCCAAAGTTAAGACAACGTCCTGTATGCAAATAAGTTCCGTGGTTGTAGCCATATATGCT                                                                                                                                                                                                                                                                                    ]
[+] EMBL AU081306             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                GTGCATATGAAGGTGCAAAACTACGGTGAAGGCAACAACTACATGANCAATGCAACCAGTGATGATTCCACCGGTAAGCTGGACGAGTTGTTAAATGATCTTAAAGTTGATGGTGATGGCAAAGAGGATGGTGAGGGCAAAGCGGATGGCGCTGGCCTGGTTAATGAGGATCTGAAAGGAGATGATGGTCAGGATGAATTGCTTCAGAATGATTTCAAAGATGAAGATGTGTCTGATGACTATGCCAACAAAAGACGTTAAAGTTCGCTCGACCATGAAGTCCAGTCCGGTAACTTTT CATGTGTTGCCGATGGAGGTGCTCTCCACAATCGCGAAATCCAAAGTTAAGACAACGTCCTGTATGCAAATAAGTTTCGT GTTGTAGCCATATATGCTGGACCATCGGGACTCTTTCGATATGCGGTCATTCAAAACCTGGATTAGTATGGATTCACTGCACTACAATCGCATCCTCTGTGGATAATCCATTGTTGCTCGGCTGCTCTCTTTGGATACAATCTACTGATAGACACTCCCTCCGAAGTCCGACCGTGTTATTC TTTTTTGGGTTAATTGGATCCATGCCATTATAAATTTTTGAGTTTTGAAGTATACCATTACAATTCATCTATTTGCAATGATACCATTGCAATTTTACAGCTAAAAAAAAA]
[+] EMBL C99042               [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              AAAGGAGATGATGGTCAGGATGAATTGCTTCAGAATGATTTCAAAGATGAAGATGTGTCTGATGACTATGCCAACAAAAGACGTTAAAGTTCGCTCGACCATGAAGTCCAGTCCGGTAACTTTT CATGTGTTGCCGATGGAGGTGCTCTCCACAATCGCGAAATCCAAAGTTAAGACAACGTCCTGTATGCAAATAAGTTTCGT GTTGTAGCCATATATGCTGGACCATCGGGACTCTTTCGATATGCGGTCATTCAAAACCTGGATTAGTATGGATTCACTGCACTACAATCGCATCCTCTGTGGATAATCCATTGTTGCTCGGCTGCTCTCTTTGGATACAATCTACTGATAGACACTCCCTCCGAAGTCCGACCGTGTTATTC TTTTTTGGGTTAATTGGATCCATGCCATTATAAATTTTTGAGTTTTGAAGTAaaaa                                                       ]




>consensus_11031#0
GAGACGCTTCCAACCCTAATCCCCCCAACACCATCAACGGATCCACCCACTGGTTGTCCG
CCTGCTTCTCCCCGCCCCAATCCACCTTAGGAATAGCGCCTGGCTGGATCCCAGGCCGTT
TGCTTGTTTGCGTCCGGAGATTGGAGCGCCGATTGGGATGAAACCGATCGGCCCTTAATG
TTTATTTTTCCCCATCACTCGATTGTATTTGTTGCCTCCGAGAGATTCTGTGCTGTTACT
GAATCCAATTTTCGTGTGATTTTTGGCAGGGGATTCTGAGATATGGCCTTCTTGCGGAAG
GTTGGGAACCTCGTCAGGCAGTCCGCAGGCTCGGGCTCGCCGCTGTTCCAGGCGGTCCGA
TGCATGTCCTCCTCGAAGCTCTTCATCGGAGGAATCTCTTATGGTACTGATGACCAGAGT
CTGAAGGAAGCGTTTGCTAACTACGGTGAAGTCATTGAAGCTAGGGTGATTGTGGACCGT
ACCACTGGACGGTCGAGGGGATTTGGTTTTGTAACCTACACATCCACGGATGAGGCTGCA
GCTGCCATTACTGGCATGGACGGGAAGGATCTGCAGGGCCGGATTGTGCGGGTGAGTTAT
GCTCATGACCGTGGTAGCCGTGCTGGTGGCTATGGTGGTGGAGGCTACAGTGGACAGGGT
ACGTATGGTGGTGGCGGTGGCTATGGAGGTGGAGGCTATGGTGGACAGGATGCATATGGT
GGTCGTGGTGTTGGAGGCTATAGTGAGGGTGGCCGTGGGTATGTTGGTGGTGGATACGGT
GACGGTAACAATTACGGTGGGTATAACACAAGTGGTGGATATAATTCTGAAGGTGGGCGT
GGTGGCTATAGTGTTTTTGAAGGTGGACATGGCTACGGTAGTGGCGGTACTGGTTACACA
GGAGGCAGCGGCGGATATAATTCGGCCCCTGGAAATTACAGCAGTGACAACTTCAATCAA
GGGGGTGCAGCACCTGGTGCATATGAAGGTGCAAACTACGGTGGAGGCAACAACTACATG
AACAATGCAACCAGTGATGATTCCACCGGTAAGCTGGACGAGTTGTTAAATGATCTTAAA
GTTGATGGTGATGGCAAAGAGGATGGTGAGGGCAAAGCGGATGGCGCTGGCCTGGTTAAT
GAGGATCTGAAAGGAGATGATGGTCAGGATGAATTGCTTCAGAATGATTTCAAAGATGAA
GATGTGTCTGATGACTATGCCAACAAAAGACGTTAAAGTTCGCTCGACCATGAAGTCCAG
TCCGGTAACTTTTCATGTGTTGCCGATGGAGGTGCTCTCCACAATCGCGAAATCCAAAGT
TAAGACAACGTCCTGTATGCAAATAAGTTTCGTGTTGTAGCCATATATGCTGGACCATCG
GGACTCTTTCGATATGCGGTCATTCAAAACCTGGATTAGTATGGATTCACTGCACTACAA
TCGCATCCTCTGTGGATAATCCATTGTTGCTCGGCTGCTCTCTTTGGATACAATCTACTG
ATAGACACTCCCTCCGAAGTCCGACCGTGTTATTCTTTTTTGGGTTAATTGGATCCATGC
CATTATAAATTTTTGAGTTTTGAAGTATACCATTACAATTCATCTATTTGCAATGATACC
ATTGCAATTTTACAGCTAAAAAAAAA

consensusID : consensus_11031#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 563
fasta sequence

                              [NNCCCNTTTAAACTNANNGACCCCCNGGNTCNAGGATNCNCCCNAGNGGCAAACCGGATGCCCNTGCCCTGTTNAAGNGGANCTTAAAGGAGNTGTGGCCCAGGNTTAATTGCNTCAGAATGATTTCAAAGATGGAAGATNTGTCTGATGACTATGCCCAACAAAAGNCGTTAAAAGTTCGCTCGACCCATGAAGTCCAGTCCGGTAACTTTTCATGTGTTGCCGATGGAGGTGCTCTCCACANTCGCGAAATCCAAAGTTAAGACAACGTCCTGTATGCAAATAAGTTTCGTGTTGTAGCCATATATGCTGGACCATCGGGACTCTTTCGATATGCGGTCATTCAAAACCTGGATTAGTATGGATTCACTGCACTACAATCGCATCCTCTGTGGATAATCCATTGTTGCTCGGCTGCTCTCTTTGGATACAATCTACTGATAGACACTCCCTCCGAAGTCCGACCGTGTTATTCTTTTTTGGGTTAATTGGATCCATGCCATTATAAATTTTTGAGTTTTGAAGTATACCATTACAATTCATCTATTTNAATGATACCATTG]

[-] EMBL BE229014             [NNCCCNTTTAAACTNANNGACCCCCNGGNTCNAGGATNCNCCCNAGNGGCAAACCGGATGCCCNTGCCCTGTTNAAGNGGANCTTAAAGGAGNTGTGGCCCAGGNTTAATTGCNTCAGAATGATTTCAAAGATGGAAGATNTGTCTGATGACTATGCCCAACAAAAGNCGTTAAAAGTTCGCTCGACCCATGAAGTCCAGTCCGGTAACTTTTCATGTGTTGCCGATGGAGGTGCTCTCCACANTCGCGAAATCCAAAGTTAAGACAACGTCCTGTATGCAAATAAGTTTCGTGTTGTAGCCATATATGCTGGACCATCGGGACTCTTTCGATATGCGGTCATTCAAAACCTGGATTAGTATGGATTCACTGCACTACAATCGCATCCTCTGTGGATAATCCATTGTTGCTCGGCTGCTCTCTTTGGATACAATCTACTGATAGACACTCCCTCCGAAGTCCGACCGTGTTATTCTTTTTTGGGTTAATTGGATCCATGCCATTATAAATTTTTGAGTTTTGAAGTATACCATTACAATTCATCTATTTNAATGATACCATTG]




>consensus_11031#1
NNCCCNTTTAAACTNANNGACCCCCNGGNTCNAGGATNCNCCCNAGNGGCAAACCGGATG
CCCNTGCCCTGTTNAAGNGGANCTTAAAGGAGNTGTGGCCCAGGNTTAATTGCNTCAGAA
TGATTTCAAAGATGGAAGATNTGTCTGATGACTATGCCCAACAAAAGNCGTTAAAAGTTC
GCTCGACCCATGAAGTCCAGTCCGGTAACTTTTCATGTGTTGCCGATGGAGGTGCTCTCC
ACANTCGCGAAATCCAAAGTTAAGACAACGTCCTGTATGCAAATAAGTTTCGTGTTGTAG
CCATATATGCTGGACCATCGGGACTCTTTCGATATGCGGTCATTCAAAACCTGGATTAGT
ATGGATTCACTGCACTACAATCGCATCCTCTGTGGATAATCCATTGTTGCTCGGCTGCTC
TCTTTGGATACAATCTACTGATAGACACTCCCTCCGAAGTCCGACCGTGTTATTCTTTTT
TGGGTTAATTGGATCCATGCCATTATAAATTTTTGAGTTTTGAAGTATACCATTACAATT
CATCTATTTNAATGATACCATTG

consensusID : consensus_11031#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 441
fasta sequence

                              [CCGCCGCCTCCGTTTTCTCCAGGGGATTCTGAGATATGGCCTTCTTGCGGAAGGTTGGGAACCTCGTCAGGCAGTCCGCAGCTCGGGCTCGCCGCTGTTCCAGGCGGTCCGATGCATGTCCTCCTCGAAGCTCTTCATCGGAGGAATCTCTTATGGTACTGATGACCAGAGTCTGAAGGAAGCGTTTGCTAACTACGGTGAAGTCATTGAAGCTAGGGTGATTGTGGACCGTACCACTGGACGGTCGAGGGGATTTGGTTTTGTAACCTACACATCCACGGATGAGGCTGCAGCTGCCATTACTTGCATGGACGGGAAGGATCTTCAGGGCCGGATTTTGCGGGTGAGTTATTCTCAATGACCCTTGGTAAGCCGTTCTTGGTGGCTATTGGTGGTNGAAGCTACAATNGACAAGGTACGTATTGGTGGTGGCCGTTGCTA]

[+] EMBL C97151               [CCGCCGCCTCCGTTTTCTCCAGGGGATTCTGAGATATGGCCTTCTTGCGGAAGGTTGGGAACCTCGTCAGGCAGTCCGCAGCTCGGGCTCGCCGCTGTTCCAGGCGGTCCGATGCATGTCCTCCTCGAAGCTCTTCATCGGAGGAATCTCTTATGGTACTGATGACCAGAGTCTGAAGGAAGCGTTTGCTAACTACGGTGAAGTCATTGAAGCTAGGGTGATTGTGGACCGTACCACTGGACGGTCGAGGGGATTTGGTTTTGTAACCTACACATCCACGGATGAGGCTGCAGCTGCCATTACTTGCATGGACGGGAAGGATCTTCAGGGCCGGATTTTGCGGGTGAGTTATTCTCAATGACCCTTGGTAAGCCGTTCTTGGTGGCTATTGGTGGTNGAAGCTACAATNGACAAGGTACGTATTGGTGGTGGCCGTTGCTA]




>consensus_11031#2
CCGCCGCCTCCGTTTTCTCCAGGGGATTCTGAGATATGGCCTTCTTGCGGAAGGTTGGGA
ACCTCGTCAGGCAGTCCGCAGCTCGGGCTCGCCGCTGTTCCAGGCGGTCCGATGCATGTC
CTCCTCGAAGCTCTTCATCGGAGGAATCTCTTATGGTACTGATGACCAGAGTCTGAAGGA
AGCGTTTGCTAACTACGGTGAAGTCATTGAAGCTAGGGTGATTGTGGACCGTACCACTGG
ACGGTCGAGGGGATTTGGTTTTGTAACCTACACATCCACGGATGAGGCTGCAGCTGCCAT
TACTTGCATGGACGGGAAGGATCTTCAGGGCCGGATTTTGCGGGTGAGTTATTCTCAATG
ACCCTTGGTAAGCCGTTCTTGGTGGCTATTGGTGGTNGAAGCTACAATNGACAAGGTACG
TATTGGTGGTGGCCGTTGCTA

consensusID : consensus_11031#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 440
fasta sequence

                              [TTGATGATTCCACCGGTTAAGCTGGACGAGTTGTTNAATGATCTTAAAGTTGATGGTGATGGCCAAAGAGGATGGTGAGGGCAAAGCGGATGGCGCTGGCCTGGTTAATGAGGATCTGAAAGGAGATGATGGTCAGGATGAATTGCTTCAGAATGATTTCAAAGATGAAGATGTGTCTGATGACTATGCCAACAAAAGACGTTAAAGTTCGCTCGACCATGAAGTCCAGTCCGGTAACTTTTCATGTGTTGCCGATGGAGGTGCTCTCCACAATCGCGAAATCCAAAGTTAAGACAACGTCCTGTATGCAAATAAGTTTCGTGTTGTAGCCATATATGCTGGACCATCGGGACTCTTTCGATATGCGGTCATTCAAAACCTGGATTAGTATGGATTCACTGCACTACAATCGCATCCTCTGTGGATAATCAAAAAAAAAA]

[+] EMBL AU069153             [TTGATGATTCCACCGGTTAAGCTGGACGAGTTGTTNAATGATCTTAAAGTTGATGGTGATGGCCAAAGAGGATGGTGAGGGCAAAGCGGATGGCGCTGGCCTGGTTAATGAGGATCTGAAAGGAGATGATGGTCAGGATGAATTGCTTCAGAATGATTTCAAAGATGAAGATGTGTCTGATGACTATGCCAACAAAAGACGTTAAAGTTCGCTCGACCATGAAGTCCAGTCCGGTAACTTTTCATGTGTTGCCGATGGAGGTGCTCTCCACAATCGCGAAATCCAAAGTTAAGACAACGTCCTGTATGCAAATAAGTTTCGTGTTGTAGCCATATATGCTGGACCATCGGGACTCTTTCGATATGCGGTCATTCAAAACCTGGATTAGTATGGATTCACTGCACTACAATCGCATCCTCTGTGGATAATCAAAAAAAAAA]




>consensus_11031#3
TTGATGATTCCACCGGTTAAGCTGGACGAGTTGTTNAATGATCTTAAAGTTGATGGTGAT
GGCCAAAGAGGATGGTGAGGGCAAAGCGGATGGCGCTGGCCTGGTTAATGAGGATCTGAA
AGGAGATGATGGTCAGGATGAATTGCTTCAGAATGATTTCAAAGATGAAGATGTGTCTGA
TGACTATGCCAACAAAAGACGTTAAAGTTCGCTCGACCATGAAGTCCAGTCCGGTAACTT
TTCATGTGTTGCCGATGGAGGTGCTCTCCACAATCGCGAAATCCAAAGTTAAGACAACGT
CCTGTATGCAAATAAGTTTCGTGTTGTAGCCATATATGCTGGACCATCGGGACTCTTTCG
ATATGCGGTCATTCAAAACCTGGATTAGTATGGATTCACTGCACTACAATCGCATCCTCT
GTGGATAATCAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_11031#1      ------------------------------------------------------------
consensus_11031#3      ------------------------------------------------------------
consensus_11031#0      GAGACGCTTCCAACCCTAATCCCCCCAACACCATCAACGGATCCACCCACTGGTTGTCCG 60
consensus_11031#2      ------------------------------------------------------------
                                                                                   

consensus_11031#1      ------------------------------------------------------------
consensus_11031#3      ------------------------------------------------------------
consensus_11031#0      CCTGCTTCTCCCCGCCCCAATCCACCTTAGGAATAGCGCCTGGCTGGATCCCAGGCCGTT 120
consensus_11031#2      ------------------------------------------------------------
                                                                                   

consensus_11031#1      ------------------------------------------------------------
consensus_11031#3      ------------------------------------------------------------
consensus_11031#0      TGCTTGTTTGCGTCCGGAGATTGGAGCGCCGATTGGGATGAAACCGATCGGCCCTTAATG 180
consensus_11031#2      ------------------------------------------------------------
                                                                                   

consensus_11031#1      ------------------------------------------------------------
consensus_11031#3      ------------------------------------------------------------
consensus_11031#0      TTTATTTTTCCCCATCACTCGATTGTATTTGTTGCCTCCGAGAGATTCTGTGCTGTTACT 240
consensus_11031#2      ------------------------------------------------------------
                                                                                   

consensus_11031#1      ------------------------------------------------------------
consensus_11031#3      ------------------------------------------------------------
consensus_11031#0      GAATCCAATTTTCGTGTGATTTTTGGCAGGGGATTCTGAGATATGGCCTTCTTGCGGAAG 300
consensus_11031#2      ------------------------------------------------------------
                                                                                   

consensus_11031#1      ------------------------------------------------------------
consensus_11031#3      ------------------------------------------------------------
consensus_11031#0      GTTGGGAACCTCGTCAGGCAGTCCGCAGGCTCGGGCTCGCCGCTGTTCCAGGCGGTCCGA 360
consensus_11031#2      ------------------------------------------------------------
                                                                                   

consensus_11031#1      ------------------------------------------------------------
consensus_11031#3      ------------------------------------------------------------
consensus_11031#0      TGCATGTCCTCCTCGAAGCTCTTCATCGGAGGAATCTCTTATGGTACTGATGACCAGAGT 420
consensus_11031#2      ------------------------------------------------------------
                                                                                   

consensus_11031#1      ------------------------------------------------------------
consensus_11031#3      ------------------------------------------------------------
consensus_11031#0      CTGAAGGAAGCGTTTGCTAACTACGGTGAAGTCATTGAAGCTAGGGTGATTGTGGACCGT 480
consensus_11031#2      ------------------------------------------------------------
                                                                                   

consensus_11031#1      ------------------------------------------------------------
consensus_11031#3      ------------------------------------------------------------
consensus_11031#0      ACCACTGGACGGTCGAGGGGATTTGGTTTTGTAACCTACACATCCACGGATGAGGCTGCA 540
consensus_11031#2      ------------------------------------------------------------
                                                                                   

consensus_11031#1      ------------------------------------------------------------
consensus_11031#3      ------------------------------------------------------------
consensus_11031#0      GCTGCCATTACTGGCATGGACGGGAAGGATCTGCAGGGCCGGATTGTGCGGGTGAGTTAT 600
consensus_11031#2      ------------------------------------------------------------
                                                                                   

consensus_11031#1      ------------------------------------------------------------
consensus_11031#3      ------------------------------------------------------------
consensus_11031#0      GCTCATGACCGTGGTAGCCGTGCTGGTGGCTATGGTGGTGGAGGCTACAGTGGACAGGGT 660
consensus_11031#2      ------------------------------------------------------------
                                                                                   

consensus_11031#1      ------------------------------------------------------------
consensus_11031#3      ------------------------------------------------------------
consensus_11031#0      ACGTATGGTGGTGGCGGTGGCTATGGAGGTGGAGGCTATGGTGGACAGGATGCATATGGT 720
consensus_11031#2      ------------------------------------------------------------
                                                                                   

consensus_11031#1      ------------------------------------------------------------
consensus_11031#3      ------------------------------------------------------------
consensus_11031#0      GGTCGTGGTGTTGGAGGCTATAGTGAGGGTGGCCGTGGGTATGTTGGTGGTGGATACGGT 780
consensus_11031#2      ------------------------------------------------------------
                                                                                   

consensus_11031#1      ------------------------------------------------------------
consensus_11031#3      ------------------------------------------------------------
consensus_11031#0      GACGGTAACAATTACGGTGGGTATAACACAAGTGGTGGATATAATTCTGAAGGTGGGCGT 840
consensus_11031#2      ------------------------------------------------------------
                                                                                   

consensus_11031#1      ------------------------------------------------------------
consensus_11031#3      ------------------------------------------------------------
consensus_11031#0      GGTGGCTATAGTGTTTTTGAAGGTGGACATGGCTACGGTAGTGGCGGTACTGGTTACACA 900
consensus_11031#2      ------------------------------------------------------------
                                                                                   

consensus_11031#1      ------------------------------------------------------------
consensus_11031#3      ------------------------------------------------------------
consensus_11031#0      GGAGGCAGCGGCGGATATAATTCGGCCCCTGGAAATTACAGCAGTGACAACTTCAATCAA 960
consensus_11031#2      ------------------------------------------------------------
                                                                                   

consensus_11031#1      ------------------------------------------------------------
consensus_11031#3      ------------------------------------------------------------
consensus_11031#0      GGGGGTGCAGCACCTGGTGCATATGAAGGTGCAAACTACGGTGGAGGCAACAACTACATG 1020
consensus_11031#2      ------------------------------------------------------------
                                                                                   

consensus_11031#1      -------------------------------------------NNCCCNTTTAAACTNAN 17
consensus_11031#3      -------------TTGATGATTCCACCGGTTAAGCTGGACGAGTTGTTNAATGATCTTAA 47
consensus_11031#0      AACAATGCAACCAGTGATGATTCCACCGGT-AAGCTGGACGAGTTGTTAAATGATCTTAA 1079
consensus_11031#2      -------CCGCCGCCTCCGTTTTCTCCAGGGGATTCTGAGATATGGCCTTCTTGCGGAAG 53
                                                                          *      * 

consensus_11031#1      N--GACCCCCNGGNT--CNAGGATNCNCCCNAGNGGCAAACCGGATGCCCNTGCCCTG-T 72
consensus_11031#3      A--GTTGATGGTGATGGCCAAAGAGGATGGTGAGGGCAAAGCGGATGGCGCTGGCCTGGT 105
consensus_11031#0      A--GTTGATGGTGATG-GCAAAGAGGATGGTGAGGGCAAAGCGGATGGCGCTGGCCTGGT 1136
consensus_11031#2      GTTGGGAACCTCGTCAGGCAGTCCGCAGCTCGGGCTCGCCGCTGTTCCAGGCGGTCCGAT 113
                          *        *      *                *    * * *      *  * * *

consensus_11031#1      TNAAGNGGANCTTAAAGGAGNTGTGGCCCAGGNTTAATTGCNTCAGAATGATTTCAAAGA 132
consensus_11031#3      TAATGAGGATCTGAAAGGAGATGATGGTCAGGATGAATTGCTTCAGAATGATTTCAAAGA 165
consensus_11031#0      TAATGAGGATCTGAAAGGAGATGATGGTCAGGATGAATTGCTTCAGAATGATTTCAAAGA 1196
consensus_11031#2      GCATGTCCTCCTCGAAGCTCTTCATCGGAGGAATCTCTTATGGTACTGATGACCAGAGTC 173
                         * *     **  ***    *        *  *   **     *           *   

consensus_11031#1      TGGAAGATNTGTCTGATGACTATGCCCAACAAAAGNCGTTAAAAGTTCGCTCGACCCATG 192
consensus_11031#3      TG-AAGATGTGTCTGATGACTATGCC-AACAAAAGACGTTAAA-GTTCGCTCGACC-ATG 221
consensus_11031#0      TG-AAGATGTGTCTGATGACTATGCC-AACAAAAGACGTTAAA-GTTCGCTCGACC-ATG 1252
consensus_11031#2      TGAAGGAAGCGTTTGCTAACTACGGT-----GAAGTCATTGAA-GCTAGGGTGATT---G 224
                       ** * **   ** ** * **** *        *** * ** ** * * *   **     *

consensus_11031#1      AAGTCCAGTCCGGTAACTTTTCATGTGTTGCCGATGGAGGTGCTCTCCACANTCGCGAA- 251
consensus_11031#3      AAGTCCAGTCCGGTAACTTTTCATGTGTTGCCGATGGAGGTGCTCTCCACAATCGCGAA- 280
consensus_11031#0      AAGTCCAGTCCGGTAACTTTTCATGTGTTGCCGATGGAGGTGCTCTCCACAATCGCGAA- 1311
consensus_11031#2      TGGACCGTACCACTGGACGGTCGAGGGGATTTGGTTTTG-TAACCTACACATCCACGGAT 283
                         * **   **  *      **  * *     * *   * *   ** ****  * ** * 

consensus_11031#1      --ATCCAAAGTTAAGACAACGTCC-TGTATGCAAATAAGTTTCGTGTTGTAGCCATATAT 308
consensus_11031#3      --ATCCAAAGTTAAGACAACGTCC-TGTATGCAAATAAGTTTCGTGTTGTAGCCATATAT 337
consensus_11031#0      --ATCCAAAGTTAAGACAACGTCC-TGTATGCAAATAAGTTTCGTGTTGTAGCCATATAT 1368
consensus_11031#2      GAGGCTGCAGCTGCCATTACTTGCATGGACGGGAAGGATCTTCAGGGCCGGATTTTGCGG 343
                           *   ** *   *  ** * * ** * *  **  *  ***  *         *    

consensus_11031#1      GCTGGACCATCGGGACT-CTTTCGATATGCGGTCATTCAAAACCTGGATTAGTATGGATT 367
consensus_11031#3      GCTGGACCATCGGGACT-CTTTCGATATGCGGTCATTCAAAACCTGGATTAGTATGGATT 396
consensus_11031#0      GCTGGACCATCGGGACT-CTTTCGATATGCGGTCATTCAAAACCTGGATTAGTATGGATT 1427
consensus_11031#2      GTGAGTTATTCTCAATGACCCTTGGTAAGCCGTTCTTGGTGGCTATTGGTGGTNGAAGCT 403
                       *   *    **   *   *  * * ** ** **  **     *      * **      *

consensus_11031#1      -CACTGCACTACAATCGCATCCTCTGTGGATAATCCATTGTTGCTCGGCTGCTCTCTTTG 426
consensus_11031#3      -CACTGCACTACAATCGCATCCTCTGTGGATAATCAAAAAAAAAA--------------- 440
consensus_11031#0      -CACTGCACTACAATCGCATCCTCTGTGGATAATCCATTGTTGCTCGGCTGCTCTCTTTG 1486
consensus_11031#2      ACAATNGACAAGGTACGTATTGGTGGTGGCCGTTGCTA---------------------- 441
                        ** *  ** *    ** **     ****    *                          

consensus_11031#1      GATACAATCTACTGATAGACACTCCCTCCGAAGTCCGACCGTGTTATTCTTTTTTGGGTT 486
consensus_11031#3      ------------------------------------------------------------
consensus_11031#0      GATACAATCTACTGATAGACACTCCCTCCGAAGTCCGACCGTGTTATTCTTTTTTGGGTT 1546
consensus_11031#2      ------------------------------------------------------------
                                                                                   

consensus_11031#1      AATTGGATCCATGCCATTATAAATTTTTGAGTTTTGAAGTATACCATTACAATTCATCTA 546
consensus_11031#3      ------------------------------------------------------------
consensus_11031#0      AATTGGATCCATGCCATTATAAATTTTTGAGTTTTGAAGTATACCATTACAATTCATCTA 1606
consensus_11031#2      ------------------------------------------------------------
                                                                                   

consensus_11031#1      TTTN-AATGATACCATTG---------------------- 563
consensus_11031#3      ----------------------------------------
consensus_11031#0      TTTGCAATGATACCATTGCAATTTTACAGCTAAAAAAAAA 1646
consensus_11031#2      ----------------------------------------