cluster # 11043

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Oryza sativa
cluster # 11043 cluster # 11043 Sequences # 8 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_11043#0 length = 1438 sequences # 5

consensus_11043#1 length = 1394 sequences # 3

consensusID : consensus_11043#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 1438
fasta sequence

                              [CCCGATGCCGCTCTCCTACTCAGCCGCCGCCGCCGCCGCGCCGTCCCCTCTCGCCGCGCGCAGCCGCGGCCTCCTCCGCCGACCGCCGCGCTCTTCCCCCGTCGTCGTGAGGTGCAAGAAGATTGATCAACTGAGGGCAGTCAATGGAATACCACCATACGCTCCAGTGTCTAACAGATCGTTGTTAAGTCCTGTGACGCTGCCGATTATCCGGGATGCGAATATTAAGAATGATACAAGGTTGCGTATCTTCTCAGGGACTGCCAACCCTTCTCTTTCCCAGGAAATAGCAAGTTACTTGGGCTTAGAACTTGGGAAGATTAACATAAAAAGGTTTGCTGATGGCGAAATATATGTTCAGTTACAAGAAAGCGTAAGGGGATGCGATGTTTTCCTTGTGCAACCAACGTGCCCTCCTGCAAATGAGAATCTTATGGAACTTCTGATCATGATTGATGCCTGTAGGAGAGCATCTGCTAAGAATATTACTGCAGTCATCCCTTATTTTGGTTATGCCAGAGCTGACAGGAAGTCTCAAGGCCGTGAATCTATAGCTGCAAAACTTGTAGCTAATATGATTACAGAAGCTGGTGCGAACCGTGTCCTTGTATGTGATCTTCATTCCAGTCAAGCCATGGGATACTTTGACATCCCAGTAGATCATGTTTATGGTCAGCCTGTGATTCTTGATTACCTCGCCAGCAAGACAATATGTTCAGATGACCTGGTGGTGGTGTCTCCGGATGTTGGAGGTGTTGCCAGGGCACGTGCTTTTGCCAAAAAGCTATCAGATGCACCTCTAGCAATTGTTGATAAAAGAAGGCATGGACACAATGTTGCCGAGGTAATGAATCTTATTGGAGATGTTAGAGGAAAAGTGGCTGTTATGATGGATGATATGATTGATACAGCTGGAACTATTGCCAAAGGAGCTGAGCTGCTGCATCAAGAAGGAGCAAGAGAAGTCTATGCATGCTGTACACATGCTGTTTTTAGCCCGCCCGCCATTGAAAGGTTATCAAGTGGTTTGTTTCAAGAAGTAATCATCACAAACACTATACCTCTCAAGGAGGACAAGAGTTTCCCGCAGCTGACTATCCTTTCAGTTGCTAACCTTTTAGGCGAGACAATCTGGCGTGTTCATGATGATTGCTCAGTTGGTCATGAGCCATACTCTAGCTTGGACATTGACTGAAGCTCAAGGTGTATCACGCCCAATCCCCAATTTTTGGCTTTTCTCCACCTTTGGTTTCGTGGAATAAGCTGTGTAATCTGATGCTCCTACTAGTGCAAGAACTTTTGAGTATTTCAATGAACCATAGTACATAAGATCGAAATTTAGGTAGTTTGGTTTGCTAGCATGCTCAGTGTAATGTACATATTGTTTCCACGTGATCCATTTATTTCTTTGCAAAGATCAATGCTGAATGGTTCAATT]

[+] EMBL AK060422             [CCCGATGCCGCTCTCCTACTCAGCCGCCGCCGCCGCCGCGCCGTCCCCTCTCGCCGCGCGCAGCCGCGGCCTCCTCCGCCGACCGCCGCGCTCTTCCCCCGTCGTCGTGAGGTGCAAGAAGATTGATCAACTGAGGGCAGTCAATGGAATACCACCATACGCTCCAGTGTCTAACAGATCGTTGTTAAGTCCTGTGACGCTGCCGATTATCCGGGATGCGAATATTAAGAATGATACAAGGTTGCGTATCTTCTCAGGGACTGCCAACCCTTCTCTTTCCCAGGAAATAGCAAGTTACTTGGGCTTAGAACTTGGGAAGATTAACATAAAAAGGTTTGCTGATGGCGAAATATATGTTCAGTTACAAGAAAGCGTAAGGGGATGCGATGTTTTCCTTGTGCAACCAACGTGCCCTCCTGCAAATGAGAATCTTATGGAACTTCTGATCATGATTGATGCCTGTAGGAGAGCATCTGCTAAGAATATTACTGCAGTCATCCCTTATTTTGGTTATGCCAGAGCTGACAGGAAGTCTCAAGGCCGTGAATCTATAGCTGCAAAACTTGTAGCTAATATGATTACAGAAGCTGGTGCGAACCGTGTCCTTGTATGTGATCTTCATTCCAGTCAAGCCATGGGATACTTTGACATCCCAGTAGATCATGTTTATGGTCAGCCTGTGATTCTTGATTACCTCGCCAGCAAGACAATATGTTCAGATGACCTGGTGGTGGTGTCTCCGGATGTTGGAGGTGTTGCCAGGGCACGTGCTTTTGCCAAAAAGCTATCAGATGCACCTCTAGCAATTGTTGATAAAAGAAGGCATGGACACAATGTTGCCGAGGTAATGAATCTTATTGGAGATGTTAGAGGAAAAGTGGCTGTTATGATGGATGATATGATTGATACAGCTGGAACTATTGCCAAAGGAGCTGAGCTGCTGCATCAAGAAGGAGCAAGAGAAGTCTATGCATGCTGTACACATGCTGTTTTTAGCCCGCCCGCCATTGAAAGGTTATCAAGTGGTTTGTTTCAAGAAGTAATCATCACAAACACTATACCTCTCAAGGAGGACAAGAGTTTCCCGCAGCTGACTATCCTTTCAGTTGCTAACCTTTTAGGCGAGACAATCTGGCGTGTTCATGATGATTGCTCAGTTGGTCATGAGCCATACTCTAGCTTGGACATTGACTGAAGCTCAAGGTGTATCACGCCCAATCCCCAATTTTTGGCTTTTCTCCACCTTTGGTTTCGTGGAATAAGCTGTGTAATCTGATGCTCCTACTAGTGCAAGAACTTTTGAGTATTTCAATGAACCATAGTACATAAGATCGAAATTTAGGTAGTTTGGTTTGCTAGCATGCTCAGTGTAATGTACATATTGTTTCCACGTGATCCATTTATTTCTTTGCAAAGATCAATGCTGAAT         ]
[+] EMBL CB644974             [     TGCCGCCCTCCTACTCAGCCGCCGCCGCCGCCGCGCCGTCCCCTCTCGCCGCGCGCAGCCGCGGCCTCCTCCGCCGACCGCCGCGCTCTTCCCCCGTCGTCGTGAGGTGCAAGAAGATTGATCAACTGAGGGCAGTCAATGGAATACCACCATACGCTCCAGTGTCTAACAGATCGTTGTTAAGTCCTGTGACGCTGCCGATTATCCGGGATGCGAATATTAAGAATGATACAAGGTTGCGTATCTTCTCAGGGACTGCCAACCCTTCTCTTTCCCAGGAAATAGCAAGTTACTTGGGCTTAGAACTTGGGAAGATTAACATAAAAAGGTTTGCTGATGGCGAAATATATGTTCAGTTACAAGAAAGCGTAAGGGGATGCGATGTTTTCCTTGTGCAACCAACGTGCCCTCCTGCAAATGAGAATCTTATGGAACTTCTGATCATGATTGATGCCTGTAGGAGAGCATCTGCTAAGAATATTACTGCAGTCATCCCTTATTTTGGTTATGCCAGAGCTGACAGGAAGTCTCAAGGCCGTGAATCTATAGCTGCAAAACTTGTAGCTAATATGATTACAGAAGCTGGTGCGAACCGTGTCCTTGTATGTGATCTTCATTCCAGTCAAGCCATGGGATACTTTGACATCCCAGTAGATCATGTTTATGGTCAGCCTGTGATTCTTGATTACCTCGCCAGCAAGACAATATGTTCAGATGACCTGGTGGTGGTGTCTCCGGATGTTGGAGGTGTTGCCA GGCACGTGCTTTTGCCAAAAAGCTATCAGATG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL AK099092             [           TCTCCTACTCAGCCGCCGCCGCCGCCGCGCCGTCCCCTCTCGCCGCGCGCAGCCGCGGCCTCCTCCGCCGACCGCCGCGCTCTTCCCCCGTCGTCGTGAGGTGCAAGAAGATTGATCAACTGAGGGCAGTCAATGGAATACCACCATACGCTCCAGTGTCTAACAGATCGTTGTTAAGTCCTGTGACGCTGCCGATTATCCGGGATGCGAATATTAAGAATGATACAAGGTTGCGTATCTTCTCAGGGACTGCCAACCCTTCTCTTTCCCAGGAAATAGCAAGTTACTTGGGCTTAGAACTTGGGAAGATTAACATAAAAAGGTTTGCTGATGGCGAAATATATGTTCAGTTACAAGAAAGCGTAAGGGGATGCGATGTTTTCCTTGTGCAACCAACGTGCCCTCCTGCAAATGAGAATCTTATGGAACTTCTGATCATGATTGATGCCTGTAGGAGAGCATCTGCTAAGAATATTACTGCAGTCATCCCTTATTTTGGTTATGCCAGAGCTGACAGGAAGTCTCAAGGCCGTGAATCTATAGCTGCAAAACTTGTAGCTAATATGATTACAGAAGCTGGTGCGAACCGTGTCCTTGTATGTGATCTTCATTCCAGTCAAGCCATGGGATACTTTGACATCCCAGTAGATCATGTTTATGGTCAGCCTGTGATTCTTGATTACCTCGCCAGCAAGACAATATGTTCAGATGACCTGGTGGTGGTGTCTCCGGATGTTGGAGGTGTTGCCAGGGCACGTGCTTTTGCCAAAAAGCTATCAGATGCACCTCTAGCAATTGTTGATAAAAGAAGGCATGGACACAATGTTGCCGAGGTAATGAATCTTATTGGAGATGTTAGAGGAAAAGTGGCTGTTATGATGGATGATATGATTGATACAGCTGGAACTATTGCCAAAGGAGCTGAGCTGCTGCATCAAGAAGGAGCAAGAGAAGTCTATGCATGCTGTACACATGCTGTTTTTAGCCCGCCCGCCATTGAAAGGTTATCAAGTGGTTTGTTTCAAGAAGTAATCATCACAAACACTATACCTCTCAAGGAGGACAAGAGTTTCCCGCAGCTGACTATCCTTTCAGTTGCTAACCTTTTAGGCGAGACAATCTGGCGTGTTCATGATGATTGCTCAGTTGGTCATGAGCCATACTCTAGCTTGGACATTGACTGAAGCTCAAGGTGTATCACGCCCAATCCCCAATTTTTGGCTTTTCTCCACCTTTGGTTTCGTGGAATAAGCTGTGTAATCTGATGCTCCTACTAGTGCAAGAACTTTTGAGTATTTCAATGAACCATAGTACATAAGATCGAAATTTAGGTAGTTTGGTTTGCTAGCATGCTCAGTGTAATGTACATATTGTTTCCACGTGATCCATTTATTTCTTTGCAAAGATCAATGCTGAATGGTTCAATT]
[-] EMBL CB682264             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ATGGGATACTTTGACATCCCAGTAGATCATGTTTATGGTCAGCCTGTGATTCTTGATTACCTCGCCAGCAAGACAATATGTTCAGATGACCTGGTGGTGGTGTCTCCGGATGTTGGAGGTGTTGCCAGGGCACGTGCTTTTGCCAAAAAGCTATCAGATGCACCTCTAGCAATTGTTGATAAAAGAAGGCATGGACACAATGTTGCCGAGGTAATGAATCTTATTGGAGATGTTAGAGGAAAAGTGGCTGTTATGATGGATGATATGATTGATACAGCTGGAACTATTGCCAAAGGAGCTGAGCTGCTGCATCAAGAAGGAGCAAGAGAAGTCTATGCATGCTGTACACATGCTGTTTTTAGCCCGCCCGCCATTGAAAGGTTATCAAGTGGTTTGTTTCAAGAAGTAATCATCACAAACACTATACCTCTCAAGGAGGACAAGAGTTTCCCGCAGCTGACTATCCTTTCAGTTGCTAACCTTTTAGGCGAGACAATCTGGCGTGTTCATGATGATTGCTCAGTTGGTCATGAGCCATACTCTAGCTTGGACATTGACTGAAGCTCAAGGTGTATCACGCCCAATCCCCAATTTTTGGCTTTTCTCCACCTTTGGTTTCGTGGAATAAGCTGTGTAATCTGATGCTCCTACTAGTGCAAGAACTTTTGAGTATTTCAATGAACCATAGTACATAAGATCGAAATTTAGGTAGTTTGGTTTGCTAGCATGCTCAGTGTAATGTACATATTGTTTCCACGTGATCCATTTATTTCTTTGCAAAGATCAATGCTGAATG        ]
[-] EMBL CB652399             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 AGATCATGTTTATGGTCAGCCTGTGATTCTTGATTACCTCGCCAGCAAGACAATATGTTCAGATGACCTGGTGGTGGTGTCTCCGGATGTTGGAGGTGTTGCCAGGGCACGTGCTTTTGCCAAAAAGCTATCAGATGCACCTCTAGCAATTGTTGATAAAAGAAGGCATGGACACAATGTTGCCGAGGTAATGAATCTTATTGGAGATGTTAGAGGAAAAGTGGCTGTTATGATGGATGATATGATTGATACAGCTGGAACTATTGCCAAAGGAGCTGAGCTGCTGCATCAAGAAGGAGCAAGAGAAGTCTATGCATGCTGTACACATGCTGTTTTTAGCCCGCCCGCCATTGAAAGGTTATCAAGTGGTTTGTTTCAAGAAGTAATCATCCCAAACACTATACCTCTCAAGGAGGACAAGAGTTTCCCGCAGCTGACTATCCTTTCAGTTGCTAACCTTTTAGGCGAGACAATCTGGCGTGTTCATGATGATTGCTCAGTTGGTCATGAGCCATACTCTAGCTTGGACATTGACTGAAGCTCAAGGTGTATCACGCCCAATCCCCAATTTTTGGCTTTTCTCCACCTTTGGTTTCGTGGAATAAGCTGTGTAATCTGATGCTCCTACTAGTGCAAGAACTTTTGGGTATTTCAATGAACCATAGTACATAAGATCGAAATT                                                                                                   ]




>consensus_11043#0
CCCGATGCCGCTCTCCTACTCAGCCGCCGCCGCCGCCGCGCCGTCCCCTCTCGCCGCGCG
CAGCCGCGGCCTCCTCCGCCGACCGCCGCGCTCTTCCCCCGTCGTCGTGAGGTGCAAGAA
GATTGATCAACTGAGGGCAGTCAATGGAATACCACCATACGCTCCAGTGTCTAACAGATC
GTTGTTAAGTCCTGTGACGCTGCCGATTATCCGGGATGCGAATATTAAGAATGATACAAG
GTTGCGTATCTTCTCAGGGACTGCCAACCCTTCTCTTTCCCAGGAAATAGCAAGTTACTT
GGGCTTAGAACTTGGGAAGATTAACATAAAAAGGTTTGCTGATGGCGAAATATATGTTCA
GTTACAAGAAAGCGTAAGGGGATGCGATGTTTTCCTTGTGCAACCAACGTGCCCTCCTGC
AAATGAGAATCTTATGGAACTTCTGATCATGATTGATGCCTGTAGGAGAGCATCTGCTAA
GAATATTACTGCAGTCATCCCTTATTTTGGTTATGCCAGAGCTGACAGGAAGTCTCAAGG
CCGTGAATCTATAGCTGCAAAACTTGTAGCTAATATGATTACAGAAGCTGGTGCGAACCG
TGTCCTTGTATGTGATCTTCATTCCAGTCAAGCCATGGGATACTTTGACATCCCAGTAGA
TCATGTTTATGGTCAGCCTGTGATTCTTGATTACCTCGCCAGCAAGACAATATGTTCAGA
TGACCTGGTGGTGGTGTCTCCGGATGTTGGAGGTGTTGCCAGGGCACGTGCTTTTGCCAA
AAAGCTATCAGATGCACCTCTAGCAATTGTTGATAAAAGAAGGCATGGACACAATGTTGC
CGAGGTAATGAATCTTATTGGAGATGTTAGAGGAAAAGTGGCTGTTATGATGGATGATAT
GATTGATACAGCTGGAACTATTGCCAAAGGAGCTGAGCTGCTGCATCAAGAAGGAGCAAG
AGAAGTCTATGCATGCTGTACACATGCTGTTTTTAGCCCGCCCGCCATTGAAAGGTTATC
AAGTGGTTTGTTTCAAGAAGTAATCATCACAAACACTATACCTCTCAAGGAGGACAAGAG
TTTCCCGCAGCTGACTATCCTTTCAGTTGCTAACCTTTTAGGCGAGACAATCTGGCGTGT
TCATGATGATTGCTCAGTTGGTCATGAGCCATACTCTAGCTTGGACATTGACTGAAGCTC
AAGGTGTATCACGCCCAATCCCCAATTTTTGGCTTTTCTCCACCTTTGGTTTCGTGGAAT
AAGCTGTGTAATCTGATGCTCCTACTAGTGCAAGAACTTTTGAGTATTTCAATGAACCAT
AGTACATAAGATCGAAATTTAGGTAGTTTGGTTTGCTAGCATGCTCAGTGTAATGTACAT
ATTGTTTCCACGTGATCCATTTATTTCTTTGCAAAGATCAATGCTGAATGGTTCAATT

consensusID : consensus_11043#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1394
fasta sequence

                              [CCAAATTAAACCCTAGCCATCCACCTCCGACCATCCCCCCCCCCCCCCCCCGCGTCCCCCGATGCCGCTCTCCTACTCAGCCGCCGCCGCCGCCGCGCCGTCCCCTCTCGCCGCGCGCAGCCGCGGCCTCCTCCGCCGACCGCCGCGCTCTTCCCCCGTCGTCGTGAGGTGCAAGAAGATTGATCAACTGAGGGCAGTCAATGGAATACCACCATACGCTCCAGTGTCTAACAGATCGTTGTTAAGTCCTGTGACGCTGCCGATTATCCGGGATGCGAATATTAAGAATGATACAAGGTTGCGTATCTTCTCAGGGACTGCCAACCCTTCTCTTTCCCAGGAAATAGCAAGTTACTTGGGCTTAGAACTTGGGAAGATTAACATAAAAAGGTTTGCTGATGGCGAAATATATGTTCAGTTACAAGAAAGCGTAAGGGGATGCGATGTTTTCCTTGTGCAACCAACGTGCCCTCCTGCAAATGAGAATCTTATGGAACTTCTGATCATGATTGATGCCTGTAGGAGAGCATCTGCTAAGAATATTACTGCAGTCATCCCTTATTTTGGTTATGCCAGAGCTGACAGGAAGTCTCAGGGCCGTGAATCTATAGCTGCAAAACTTGTAGCATGTTTATGGTCAGCCTGTGATTCTTGATTACCTCGCCAGCAAGACAATATGTTCAGATGACCTGGTGGTGGTGTCTCCGGATGTTGGAGGTGTTGCCAGGGCACGTGCTTTTGCCAAAAAGCTATCAGATGCACCTCTAGCAATTGTTGATAAAAGAAGGCATGGACACAATGTTGCCGAGGTAATGAATCTTATTGGAGATGTTAGAGGAAAAGTGGCTGTTATGATGGATGATATGATTGATACAGCTGGAACTATTGCCAAAGGAGCTGAGCTGCTGCATCAAGAAGGAGCAAGAGAAGTCTATGCATGCTGTACACATGCTGTTTTTAGCCCGCCCGCCATTGAAAGGTTATCAAGTGGTTTGTTTCAAGAAGTAATCATCACAAACACTATACCTCTCAAGGAGGACAAGAGTTTCCCGCAGCTGACTATCCTTTCAGTTGCTAACCTTTTAGGCGAGACAATCTGGCGTGTTCATGATGATTGCTCAGTTGGTCATGAGCCATACTCTAGCTTGGACATTGACTGAAGCTCAAGGTGTATCACGCCCAATCCCCAATTTTTGGCTTTTCTCCACCTTTGGTTTCGTGGAATAAGCTGTGTAATCTGATGCTCCTACTAGTGCAAGAACTTTTGAGTATTTCAATGAACCATAGTACATAAGATCGAAATTTAGGTAGTTTGGTTTGCTAGCATGCTCAGTGTAATGTACATATTGTTTCCACGTGATCCATTTATTTCTTTGCAAAGATCAATGCTGAAT]

[+] EMBL AK072096             [CCAAATTAAACCCTAGCCATCCACCTCCGACCATCCCCCCCCCCCCCCCCCGCGTCCCCCGATGCCGCTCTCCTACTCAGCCGCCGCCGCCGCCGCGCCGTCCCCTCTCGCCGCGCGCAGCCGCGGCCTCCTCCGCCGACCGCCGCGCTCTTCCCCCGTCGTCGTGAGGTGCAAGAAGATTGATCAACTGAGGGCAGTCAATGGAATACCACCATACGCTCCAGTGTCTAACAGATCGTTGTTAAGTCCTGTGACGCTGCCGATTATCCGGGATGCGAATATTAAGAATGATACAAGGTTGCGTATCTTCTCAGGGACTGCCAACCCTTCTCTTTCCCAGGAAATAGCAAGTTACTTGGGCTTAGAACTTGGGAAGATTAACATAAAAAGGTTTGCTGATGGCGAAATATATGTTCAGTTACAAGAAAGCGTAAGGGGATGCGATGTTTTCCTTGTGCAACCAACGTGCCCTCCTGCAAATGAGAATCTTATGGAACTTCTGATCATGATTGATGCCTGTAGGAGAGCATCTGCTAAGAATATTACTGCAGTCATCCCTTATTTTGGTTATGCCAGAGCTGACAGGAAGTCTCAGGGCCGTGAATCTATAGCTGCAAAACTTGTAGCATGTTTATGGTCAGCCTGTGATTCTTGATTACCTCGCCAGCAAGACAATATGTTCAGATGACCTGGTGGTGGTGTCTCCGGATGTTGGAGGTGTTGCCAGGGCACGTGCTTTTGCCAAAAAGCTATCAGATGCACCTCTAGCAATTGTTGATAAAAGAAGGCATGGACACAATGTTGCCGAGGTAATGAATCTTATTGGAGATGTTAGAGGAAAAGTGGCTGTTATGATGGATGATATGATTGATACAGCTGGAACTATTGCCAAAGGAGCTGAGCTGCTGCATCAAGAAGGAGCAAGAGAAGTCTATGCATGCTGTACACATGCTGTTTTTAGCCCGCCCGCCATTGAAAGGTTATCAAGTGGTTTGTTTCAAGAAGTAATCATCACAAACACTATACCTCTCAAGGAGGACAAGAGTTTCCCGCAGCTGACTATCCTTTCAGTTGCTAACCTTTTAGGCGAGACAATCTGGCGTGTTCATGATGATTGCTCAGTTGGTCATGAGCCATACTCTAGCTTGGACATTGACTGAAGCTCAAGGTGTATCACGCCCAATCCCCAATTTTTGGCTTTTCTCCACCTTTGGTTTCGTGGAATAAGCTGTGTAATCTGATGCTCCTACTAGTGCAAGAACTTTTGAGTATTTCAATGAACCATAGTACATAAGATCGAAATTTAGGTAGTTTGGTTTGCTAGCATGCTCAGTGTAATGTACATATTGTTTCCACGTGATCCATTTATTTCTTTGCAAAGATCAATGCTGAAT]
[+] EMBL CB652398             [                                                                    TCTCCTACTCAGCCGCCGCCGCCGCCGCGCCGTCCCCTCTAGCCGCGCGCAGCCGGGGCCTCCTCCGCCGACCGACGCGCTCTTCCCCCGACGTCGTGAGGTGCAAGAAGATTGATCAACTGAGGGCAGTCAATGGAATACCACCATACGCTCCAGTGTCTAACAGAACGTTGTTAAGTCCTGTGACGCTGCCGAATATCCGGGATGCGAATATTAAGAATGATACAAGGTTGCGTATTTTCTCAAGGACTGCCAACCCTTCTCTTTCCCAGGAAATAGCAAGTTACTTGGGCTTAGAACTTGGGAAGATTAACATAAAAAGGTTTGCTGATGGCGAAATATATGTTCAGTTACAAGAAAGCGTAAGGGGATGCGATGTTTTCCTTGTGCAACCAACGTGCCCTCCTGGAAATGAGAATCTTATGGAACTTCTGATCATGATTGATGCCTGTAGGAGAGCATCTGCTAAGAATATTACTGCAGTCA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[-] EMBL CB644975             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          AGATGACCTGGTGGTGGTGTCTCCGGATGTTGGAGGTGTTGCCAGGGCACGTGCTTTTGCCAAAAAGCTATCAGATGCACCTCTAGCAATTGTTGATAAAAGAAGGCATGGACACAATGTTGCCGAGGTAATGAATCTTATTGGAGATGTTAGAGGAAAAGTGGCTGTTATGATGGATGATATGATTGATACAGCTGGAACTATTGCCAAAGGAGCTGAGCTGCTGCATCAAGAAGGAGCAAGAGAAGTCTATGCATGCTGTACACATGCTGTTTTTAGCCCGCCCGCCATTGAAAGGTTATCAAGTGGTTTGTTTCAAGAAGTAATCATCACAAACACTATCCCTCTCAAGGAGGACAAGAGTTTCCCGCAGCTGACTATCCTTTCAGTTGCAAACAATTTAGGCGAGACAATCTGGCGTGTTCATGATGATTGCTCAGTTGGTCATGAGCCATACTCTAGCTTGGACATTGACTGAAGCTCAAGGTGTATCACGCCCAATCCCCAATTTTTGGCTTTTCTCCCCCTTTGGTTTCGTGGAATAAGCTGTGTAATTTGATGCTCCTACTAGTGCAAGAACTTTTGAGT                                                                                                                            ]




>consensus_11043#1
CCAAATTAAACCCTAGCCATCCACCTCCGACCATCCCCCCCCCCCCCCCCCGCGTCCCCC
GATGCCGCTCTCCTACTCAGCCGCCGCCGCCGCCGCGCCGTCCCCTCTCGCCGCGCGCAG
CCGCGGCCTCCTCCGCCGACCGCCGCGCTCTTCCCCCGTCGTCGTGAGGTGCAAGAAGAT
TGATCAACTGAGGGCAGTCAATGGAATACCACCATACGCTCCAGTGTCTAACAGATCGTT
GTTAAGTCCTGTGACGCTGCCGATTATCCGGGATGCGAATATTAAGAATGATACAAGGTT
GCGTATCTTCTCAGGGACTGCCAACCCTTCTCTTTCCCAGGAAATAGCAAGTTACTTGGG
CTTAGAACTTGGGAAGATTAACATAAAAAGGTTTGCTGATGGCGAAATATATGTTCAGTT
ACAAGAAAGCGTAAGGGGATGCGATGTTTTCCTTGTGCAACCAACGTGCCCTCCTGCAAA
TGAGAATCTTATGGAACTTCTGATCATGATTGATGCCTGTAGGAGAGCATCTGCTAAGAA
TATTACTGCAGTCATCCCTTATTTTGGTTATGCCAGAGCTGACAGGAAGTCTCAGGGCCG
TGAATCTATAGCTGCAAAACTTGTAGCATGTTTATGGTCAGCCTGTGATTCTTGATTACC
TCGCCAGCAAGACAATATGTTCAGATGACCTGGTGGTGGTGTCTCCGGATGTTGGAGGTG
TTGCCAGGGCACGTGCTTTTGCCAAAAAGCTATCAGATGCACCTCTAGCAATTGTTGATA
AAAGAAGGCATGGACACAATGTTGCCGAGGTAATGAATCTTATTGGAGATGTTAGAGGAA
AAGTGGCTGTTATGATGGATGATATGATTGATACAGCTGGAACTATTGCCAAAGGAGCTG
AGCTGCTGCATCAAGAAGGAGCAAGAGAAGTCTATGCATGCTGTACACATGCTGTTTTTA
GCCCGCCCGCCATTGAAAGGTTATCAAGTGGTTTGTTTCAAGAAGTAATCATCACAAACA
CTATACCTCTCAAGGAGGACAAGAGTTTCCCGCAGCTGACTATCCTTTCAGTTGCTAACC
TTTTAGGCGAGACAATCTGGCGTGTTCATGATGATTGCTCAGTTGGTCATGAGCCATACT
CTAGCTTGGACATTGACTGAAGCTCAAGGTGTATCACGCCCAATCCCCAATTTTTGGCTT
TTCTCCACCTTTGGTTTCGTGGAATAAGCTGTGTAATCTGATGCTCCTACTAGTGCAAGA
ACTTTTGAGTATTTCAATGAACCATAGTACATAAGATCGAAATTTAGGTAGTTTGGTTTG
CTAGCATGCTCAGTGTAATGTACATATTGTTTCCACGTGATCCATTTATTTCTTTGCAAA
GATCAATGCTGAAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_11043#0      ---------------------------------------------------------CCC 3
consensus_11043#1      CCAAATTAAACCCTAGCCATCCACCTCCGACCATCCCCCCCCCCCCCCCCCGCGTCCCCC 60
                                                                                ***

consensus_11043#0      GATGCCGCTCTCCTACTCAGCCGCCGCCGCCGCCGCGCCGTCCCCTCTCGCCGCGCGCAG 63
consensus_11043#1      GATGCCGCTCTCCTACTCAGCCGCCGCCGCCGCCGCGCCGTCCCCTCTCGCCGCGCGCAG 120
                       ************************************************************

consensus_11043#0      CCGCGGCCTCCTCCGCCGACCGCCGCGCTCTTCCCCCGTCGTCGTGAGGTGCAAGAAGAT 123
consensus_11043#1      CCGCGGCCTCCTCCGCCGACCGCCGCGCTCTTCCCCCGTCGTCGTGAGGTGCAAGAAGAT 180
                       ************************************************************

consensus_11043#0      TGATCAACTGAGGGCAGTCAATGGAATACCACCATACGCTCCAGTGTCTAACAGATCGTT 183
consensus_11043#1      TGATCAACTGAGGGCAGTCAATGGAATACCACCATACGCTCCAGTGTCTAACAGATCGTT 240
                       ************************************************************

consensus_11043#0      GTTAAGTCCTGTGACGCTGCCGATTATCCGGGATGCGAATATTAAGAATGATACAAGGTT 243
consensus_11043#1      GTTAAGTCCTGTGACGCTGCCGATTATCCGGGATGCGAATATTAAGAATGATACAAGGTT 300
                       ************************************************************

consensus_11043#0      GCGTATCTTCTCAGGGACTGCCAACCCTTCTCTTTCCCAGGAAATAGCAAGTTACTTGGG 303
consensus_11043#1      GCGTATCTTCTCAGGGACTGCCAACCCTTCTCTTTCCCAGGAAATAGCAAGTTACTTGGG 360
                       ************************************************************

consensus_11043#0      CTTAGAACTTGGGAAGATTAACATAAAAAGGTTTGCTGATGGCGAAATATATGTTCAGTT 363
consensus_11043#1      CTTAGAACTTGGGAAGATTAACATAAAAAGGTTTGCTGATGGCGAAATATATGTTCAGTT 420
                       ************************************************************

consensus_11043#0      ACAAGAAAGCGTAAGGGGATGCGATGTTTTCCTTGTGCAACCAACGTGCCCTCCTGCAAA 423
consensus_11043#1      ACAAGAAAGCGTAAGGGGATGCGATGTTTTCCTTGTGCAACCAACGTGCCCTCCTGCAAA 480
                       ************************************************************

consensus_11043#0      TGAGAATCTTATGGAACTTCTGATCATGATTGATGCCTGTAGGAGAGCATCTGCTAAGAA 483
consensus_11043#1      TGAGAATCTTATGGAACTTCTGATCATGATTGATGCCTGTAGGAGAGCATCTGCTAAGAA 540
                       ************************************************************

consensus_11043#0      TATTACTGCAGTCATCCCTTATTTTGGTTATGCCAGAGCTGACAGGAAGTCTCAAGGCCG 543
consensus_11043#1      TATTACTGCAGTCATCCCTTATTTTGGTTATGCCAGAGCTGACAGGAAGTCTCAGGGCCG 600
                       ****************************************************** *****

consensus_11043#0      TGAATCTATAGCTGCAAAACTTGTAGCTAATATGATTACAGAAGCTGGTGCGAACCGTGT 603
consensus_11043#1      TGAATCTATAGCTGCAAAACTTGTAGC--------------------------------- 627
                       ***************************                                 

consensus_11043#0      CCTTGTATGTGATCTTCATTCCAGTCAAGCCATGGGATACTTTGACATCCCAGTAGATCA 663
consensus_11043#1      -----------------------------------------------------------A 628
                                                                                  *

consensus_11043#0      TGTTTATGGTCAGCCTGTGATTCTTGATTACCTCGCCAGCAAGACAATATGTTCAGATGA 723
consensus_11043#1      TGTTTATGGTCAGCCTGTGATTCTTGATTACCTCGCCAGCAAGACAATATGTTCAGATGA 688
                       ************************************************************

consensus_11043#0      CCTGGTGGTGGTGTCTCCGGATGTTGGAGGTGTTGCCAGGGCACGTGCTTTTGCCAAAAA 783
consensus_11043#1      CCTGGTGGTGGTGTCTCCGGATGTTGGAGGTGTTGCCAGGGCACGTGCTTTTGCCAAAAA 748
                       ************************************************************

consensus_11043#0      GCTATCAGATGCACCTCTAGCAATTGTTGATAAAAGAAGGCATGGACACAATGTTGCCGA 843
consensus_11043#1      GCTATCAGATGCACCTCTAGCAATTGTTGATAAAAGAAGGCATGGACACAATGTTGCCGA 808
                       ************************************************************

consensus_11043#0      GGTAATGAATCTTATTGGAGATGTTAGAGGAAAAGTGGCTGTTATGATGGATGATATGAT 903
consensus_11043#1      GGTAATGAATCTTATTGGAGATGTTAGAGGAAAAGTGGCTGTTATGATGGATGATATGAT 868
                       ************************************************************

consensus_11043#0      TGATACAGCTGGAACTATTGCCAAAGGAGCTGAGCTGCTGCATCAAGAAGGAGCAAGAGA 963
consensus_11043#1      TGATACAGCTGGAACTATTGCCAAAGGAGCTGAGCTGCTGCATCAAGAAGGAGCAAGAGA 928
                       ************************************************************

consensus_11043#0      AGTCTATGCATGCTGTACACATGCTGTTTTTAGCCCGCCCGCCATTGAAAGGTTATCAAG 1023
consensus_11043#1      AGTCTATGCATGCTGTACACATGCTGTTTTTAGCCCGCCCGCCATTGAAAGGTTATCAAG 988
                       ************************************************************

consensus_11043#0      TGGTTTGTTTCAAGAAGTAATCATCACAAACACTATACCTCTCAAGGAGGACAAGAGTTT 1083
consensus_11043#1      TGGTTTGTTTCAAGAAGTAATCATCACAAACACTATACCTCTCAAGGAGGACAAGAGTTT 1048
                       ************************************************************

consensus_11043#0      CCCGCAGCTGACTATCCTTTCAGTTGCTAACCTTTTAGGCGAGACAATCTGGCGTGTTCA 1143
consensus_11043#1      CCCGCAGCTGACTATCCTTTCAGTTGCTAACCTTTTAGGCGAGACAATCTGGCGTGTTCA 1108
                       ************************************************************

consensus_11043#0      TGATGATTGCTCAGTTGGTCATGAGCCATACTCTAGCTTGGACATTGACTGAAGCTCAAG 1203
consensus_11043#1      TGATGATTGCTCAGTTGGTCATGAGCCATACTCTAGCTTGGACATTGACTGAAGCTCAAG 1168
                       ************************************************************

consensus_11043#0      GTGTATCACGCCCAATCCCCAATTTTTGGCTTTTCTCCACCTTTGGTTTCGTGGAATAAG 1263
consensus_11043#1      GTGTATCACGCCCAATCCCCAATTTTTGGCTTTTCTCCACCTTTGGTTTCGTGGAATAAG 1228
                       ************************************************************

consensus_11043#0      CTGTGTAATCTGATGCTCCTACTAGTGCAAGAACTTTTGAGTATTTCAATGAACCATAGT 1323
consensus_11043#1      CTGTGTAATCTGATGCTCCTACTAGTGCAAGAACTTTTGAGTATTTCAATGAACCATAGT 1288
                       ************************************************************

consensus_11043#0      ACATAAGATCGAAATTTAGGTAGTTTGGTTTGCTAGCATGCTCAGTGTAATGTACATATT 1383
consensus_11043#1      ACATAAGATCGAAATTTAGGTAGTTTGGTTTGCTAGCATGCTCAGTGTAATGTACATATT 1348
                       ************************************************************

consensus_11043#0      GTTTCCACGTGATCCATTTATTTCTTTGCAAAGATCAATGCTGAATGGTTCAATT 1438
consensus_11043#1      GTTTCCACGTGATCCATTTATTTCTTTGCAAAGATCAATGCTGAAT--------- 1394
                       **********************************************