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Oryza sativa
cluster # 11050 cluster # 11050       Sequences # 8       consensus # 4


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_11050#0 length = 1156 sequences # 5  
consensus_11050#1 length = 681 sequences # 1  
consensus_11050#2 length = 671 sequences # 1  
consensus_11050#3 length = 538 sequences # 1  

consensusID : consensus_11050#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 1156
fasta sequence
                              [GCAAAGGTTTGTGTGTGTCAGAGTCACTAGGCCTAGCTAGCTCCATCAGTTTTGGCTCTGGGATGGTGCTGGGGCAGCTTGCACTGTGGTCCAAGATTGCCAGATGAAGCATCCTGTGGGTCACCAAGATGGATAGGGAAGAGCCTCTCTTGCGTATGCATCAAGAGAAAAGGAGCCTATGAGAGAATATGCATGAACCTTACACCAGTGCAGGAAGAGAGGCTTCAGAGGCTGAGGCACCGTATGAAGGTTTATTTTGATCCTTCTAGACGAGATCATCAGGAAGCATTGAGAGCTCTTTGGCATGCAACATATCCTGACCAAGAACTACAAGGTTTGATTTCTGAACAGTGGAAGGACATGGGATGGCAAGGAAGAGACCCATCAACTGACTTCAGAGGCGCAGGATTCATATCTCTGGAGAATCTTCTATTCTTCGCGAAGACATTCTCTGCCTCATTTCAGAGGCTGCTAAAGAAACAATGTGGCAATCGAGCTACTGGGGAGTACCCATTTGCAG-TGCTGGGTGTAAATATCACATTCATGATCATGCAGATGCTGGATCTCCAATCTACTAAGCCAAGAACGTTTGTTCGAGCTGTTTTTATCCAAATGCTGTCAGAGGATGAGTGGGCATTTGATCTCCTTTANTGCGTCGCGTTCGTTGTTATGGACAAGCAGTGGCTCGACAAGAACGCCTCCTACATGGACTTCAATGAGATACTGAAGTCGACACGGACACAGCTGGAGAGGGAGCTTCTGCTGGATGATGTGATGCGGATCGAAGACATGCCGTCATACAGCCTGCTCTGCTAGTAGTGGCCATACTGGTTGAACAATCATGATTGAGTCAATGGTTCTGACCTCTGAGTGTATAGCCCCCTCCCTTTTGTTGATTCCAGGGAAGGGAATTTTTGATGGCATGTAGAGCAATGGCCTCCTATTGTCATGCTGAACTTGTCCCACTGTAAACAACTCATCTGGGCATCACCCCAATGAATTAGAATTGCTAGCATCCAATGTCAAAGCTGGTGTTAATCTGTCATATTTTACCCCATGGATGTAACAACAGAATCAACGAGTGGGTAAAATCAACTTGCAACCTCTGGTGAATGGTGTTCAATGGATCCTCATTTCCTTAAAAAAAAAAAAAAAA]

[+] EMBL CA766846             [GCAAAGGTTTGTGTGTGTCAGAGTCACTAGGCCTAGCTAGCTCCATCAGTTTTGGCTCTGGGATGGTGCTGGGGCAGCTTGCACTGTGGTCCAAGATTGCCAGATGAAGCATCCTGTGGGTCACCAAGATGGATAGGGAAGAGCCTCTCTTGCGTATGCATCAAGAGAAAAGGAGCCTATGAGAGAATATGCATGAACCTTACACCAGTGCAGGAAGAGAGGCTTCAGAGGCTGAGGCACCGTATGAAGGTTTATTTTGATCCTTCTAGACGAGATCATCAGGAAGCATTGAGAGCTCTTTGGCATGCAACATATCCTGACCAAGAACTACAAGGTTTGATTTCTGAACAGTGGAAGGACATGGGATGGCAAGGAAGAGACCCATCAACTGACTTCAGAGGCGCAGGATTCATATCTCTGGAGAATCTTCTATTCTTCGCGAAGACATTCTCTGCCTCATTTCAGAGGCTGCTAAAGAAACAATGTGGCAATCGAGCTACTTGGGAGTACCCATTTGCAGTTGCT GGTGTAAATATCACATTCATGATCATGCAGATGCTGGATCTCCAATCTACTAAGCCAAGAACGTTTGTTCGAGCTGGTTTTATCCAAATGCTGTCAGAGGATGAGTGGGCATTTGATCTCCTCTACTGCGTCGCGNTCGNTGNTATGGACAAGCAGTGGCTCGACAAGAACGCCTCCTACATGGACTTCAATGAGATACTGAAGTCGACACGGACACAGCTGGAGAGGGAGCTTCTGCTGGATGATGNGATGCGGATCGAANACATGCCGGCATACAGCCTGNTNTGGTAGNAGGGGCCATACTGGTTGAACAATCATGATTGAG                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL AK070344             [ CAAAGGTTTGTGTGTGTCAGAGTCACTAGGCCTAGCTAGCTCCATCAGTTTTGGCTCTGGGATGGTGCTGGGGCAGCTTGCACTGTGGTCCAAGATTGCCA ATGAAGCATCCTGTGGGTCACCAAGATGGATAGGGAAGAGCCTCTCTTGCGTATGCATCAAGAGAAAAGGAGCCTATGAGAGAATATGCATGAACCTTACACCAGTGCAGGAAGAGAGGCTTCAGAGGCTGAGGCACCGTATGAAGGTTTATTTTGATCCTTCTAGACGAGATCATCAGGAAGCATTGAAAGCTCTTTGGCATGCAACATATCCTGACCAAGAACTACAAGGTTTGATTTCTGAACAGTGGAAGGACATGGGATGGCAAGGAAGAGACCCATCAACTGACTTCAGAGGCGCAGGATTCATATCTCTGGAGAATCTTCTATTCTTCGCGAAGACATTCTCTGCCTCATTTCAGAGGCTGCTAAAGAAACAATGTGGCAATCGAGCTACTTGGGAGTACCCATTTGCAGTTGCT GGTGTAAATATCACATTCATGATCATGCAGATGCTGGATCTCCAATCTACTAAGCCAAGAACGTTTGTTCGAGCTGTTTTTATCCAAATGCTGTCAGAGGATGAGTGGGCATTTGATCTCCTCTACTGCGTCGCGTTCGTTGTTATGGACAAGCAGTGGCTCGACAAGAACGCCTCCTACATGGACTTCAATGAGATACTGAAGTCGACACGGACACAGCTGGAGAGGGAGCTTCTGCTGGATGATGTGATGCGGATCGAAGACATGCCGTCATACAGCCTGCTCTGCTAGTAGTGGCCATACTGGTTGAACAATCATGATTGAGTCAATGGTTCTGACCTCTGAGTGTATAGCCCCCTCCCTTTTGTTGATTCCAGGGAAGGGAATTTTTGATGGCATGTAGAGCAATGGCCTCCTATTGTCATGCTGAACTTGTCCCACTGTAAACAACTCATCTGGGCATCACCACAATGAATTAGAATTGCTAGCATCCAATGTCAAAGCTGGTGTTAATCTGTCATATTTTACCCCATGGATGTAACAACAGAATCAACGAGTGGGTAAAATCAACTTGCAACCTCTGGTG                                             ]
[-] EMBL CA762553             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                              CAGAGGCTGCTAAAGAAACAATGTGGCAATCGAGCTACTGGGGAGTACCCATTTGCAG TGCTGGGTGTAAATATCACATTCATGATCATGCAGATGCTGGATCTCCAATCTACTAAGCCAAGAACGTTTGTTCGAGCTGTTTTTATCCAAATGCTGTCAGAGGATGAGTGGGCATTTGATCTCCTTTANTGCGTCGCGTTCGTTGTTATGGACAAGCAGTGGCTCGACAAGAACGCCTCCTACATGGACTTCAATGAGATACTGAAGTCGACACGGACACAGCTGGAGAGGGAGCTTCTGCTGGATGATGTGATGCGGATCGAAGACATGCCGTCATACAGCCTGCTCTGCTAGTAGTGGCCATACTGGTTGAACAATCATGATTGAGTCAATGGTTCTGACCTCTGAGTGTATAGCCCCCTCCCTTTTGTTGATTCCAGGGAAGGGAATTTTTGATGGCATGTAGAGCAATGGCCTCCTATTGTCATGCTGAACTTGTCCCACTGTAAACAACTCATCTGGGCATCACCCCAATGAATTAGAATTGCTAGCATCCAATGTCAAAGCTGGTGTTAATCTGTCATATTTTACCCCATGGATGTAACAACAGAATCAACGAGTGGGTAAAATCAACTTGCAACCTCTGGTGAATGGTGTTCAATGGATCCTCATTTCCTTAAAAAAAAAAAAAAAA]
[-] EMBL CA762554             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                              CAGAGGCTGCTAAAGAAACAATGTGGCAATCGAGCTACTGGGGAGTACCCATTTGCAG TGCTGGGTGTAAATATCACATTCATGATCATGCAGATGCTGGATCTCCAATCTACTAAGCCAAGAACGTTTGTTCGAGCTGTTTTTATCCAAATGCTGTCAGAGGATGAGTGGGCATTTGATCTCCTTTANTGCGTCGCGTTCGTTGTTATGGACAAGCAGTGGCTCGACAAGAACGCCTCCTACATGGACTTCAATGAGATACTGAAGTCGACACGGACACAGCTGGAGAGGGAGCTTCTGCTGGATGATGTGATGCGGATCGAAGACATGCCGTCATACAGCCTGCTCTGCTAGTAGTGGCCATACTGGTTGAACAATCATGATTGAGTCAATGGTTCTGACCTCTGAGTGTATAGCCCCCTCCCTTTTGTTGATTCCAGGGAAGGGAATTTTTGATGGCATGTAGAGCAATGGCCTCCTATTGTCATGCTGAACTTGTCCCACTGTAAACAACTCATCTGGGCATCACCCCAATGAATTAGAATTGCTAGCATCCAATGTCAAAGCTGGTGTTAATCTGTCATATTTTACCCCATGGATGTAACAACAGAATCAACGAGTGGGTAAAATCAACTTGCAACCTCTGGTGAATGGTGTTCAATGGATCCTCATTTCCTTAAAAAAAAAAAAAAAA]
[-] EMBL CA762555             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                              CAGAGGCTGCTAAAGAAACAATGTGGCAATCGAGCTACTGGGGAGTACCCATTTGCAG TGCTGGGTGTAAATATCACATTCATGATCATGCAGATGCTGGATCTCCAATCTACTAAGCCAAGAACGTTTGTTCGAGCTGTTTTTATCCAAATGCTGTCAGAGGATGAGTGGGCATTTGATCTCCTTTANTGCGTCGCGTTCGTTGTTATGGACAAGCAGTGGCTCGACAAGAACGCCTCCTACATGGACTTCAATGAGATACTGAAGTCGACACGGACACAGCTGGAGAGGGAGCTTCTGCTGGATGATGTGATGCGGATCGAAGACATGCCGTCATACAGCCTGCTCTGCTAGTAGTGGCCATACTGGTTGAACAATCATGATTGAGTCAATGGTTCTGACCTCTGAGTGTATAGCCCCCTCCCTTTTGTTGATTCCAGGGAAGGGAATTTTTGATGGCATGTAGAGCAATGGCCTCCTATTGTCATGCTGAACTTGTCCCACTGTAAACAACTCATCTGGGCATCACCCCAATGAATTAGAATTGCTAGCATCCAATGTCAAAGCTGGTGTTAATCTGTCATATTTTACCCCATGGATGTAACAACAGAATCAACGAGTGGGTAAAATCAACTTGCAACCTCTGGTGAATGGTGTTCAATGGATCCTCATTTCCTTAAAAAAAAAAAAAAAA]


>consensus_11050#0 GCAAAGGTTTGTGTGTGTCAGAGTCACTAGGCCTAGCTAGCTCCATCAGTTTTGGCTCTG GGATGGTGCTGGGGCAGCTTGCACTGTGGTCCAAGATTGCCAGATGAAGCATCCTGTGGG TCACCAAGATGGATAGGGAAGAGCCTCTCTTGCGTATGCATCAAGAGAAAAGGAGCCTAT GAGAGAATATGCATGAACCTTACACCAGTGCAGGAAGAGAGGCTTCAGAGGCTGAGGCAC CGTATGAAGGTTTATTTTGATCCTTCTAGACGAGATCATCAGGAAGCATTGAGAGCTCTT TGGCATGCAACATATCCTGACCAAGAACTACAAGGTTTGATTTCTGAACAGTGGAAGGAC ATGGGATGGCAAGGAAGAGACCCATCAACTGACTTCAGAGGCGCAGGATTCATATCTCTG GAGAATCTTCTATTCTTCGCGAAGACATTCTCTGCCTCATTTCAGAGGCTGCTAAAGAAA CAATGTGGCAATCGAGCTACTGGGGAGTACCCATTTGCAGTGCTGGGTGTAAATATCACA TTCATGATCATGCAGATGCTGGATCTCCAATCTACTAAGCCAAGAACGTTTGTTCGAGCT GTTTTTATCCAAATGCTGTCAGAGGATGAGTGGGCATTTGATCTCCTTTANTGCGTCGCG TTCGTTGTTATGGACAAGCAGTGGCTCGACAAGAACGCCTCCTACATGGACTTCAATGAG ATACTGAAGTCGACACGGACACAGCTGGAGAGGGAGCTTCTGCTGGATGATGTGATGCGG ATCGAAGACATGCCGTCATACAGCCTGCTCTGCTAGTAGTGGCCATACTGGTTGAACAAT CATGATTGAGTCAATGGTTCTGACCTCTGAGTGTATAGCCCCCTCCCTTTTGTTGATTCC AGGGAAGGGAATTTTTGATGGCATGTAGAGCAATGGCCTCCTATTGTCATGCTGAACTTG TCCCACTGTAAACAACTCATCTGGGCATCACCCCAATGAATTAGAATTGCTAGCATCCAA TGTCAAAGCTGGTGTTAATCTGTCATATTTTACCCCATGGATGTAACAACAGAATCAACG AGTGGGTAAAATCAACTTGCAACCTCTGGTGAATGGTGTTCAATGGATCCTCATTTCCTT AAAAAAAAAAAAAAAA



consensusID : consensus_11050#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 681
fasta sequence
                              [AGACATTCTTTGCCTCATTTCAGAGGCTGCTAAAGAAACAATGTGGCAATCGAGCTACTTGGGAGTACCCATTTGCAGTTGCTGGTGTAAATATCACATTCATGATCATGCAGATGCTGGATCTCCAATCTACTAAGCCAAGAACGTTTGTTCGAGCTGTTTTTATCCAAATGCTGTCAGAGGATGAGTGGGCATTTGATCTCCTCTANTGCGTCGCGTCCGTTGTTATGGACAAGCAGTGGCTCGACAAGAACGCCTCCTACATGGACTTCAATGAGATACTGAAGTCGACACGGACACAGCTGGAGAGGGAGCTTTTGCTGGATGATGTGATGCGGATCGAAGACATGCCGTCATACAGCCTGCTTTGCTAGTAGTGGCCATACTGGTTGAACAATCATGATTGAGTCAATGGTTCTGACCTCTGAGTGTATAGCCCCCTCCCTTTTGTTGATTCCAGGGAAGGGAATTTTTGATGGCATGTAGAGCAATGGCCTCCTATTGTCATGCTGAACTTGTCCCACTGTAAACAACTTATCTGGGCATCACCACAATGAATTAGAATTGCTAGCATCCAATGTCAAAGCTGGTGTTAATCTGTCATATTTTACCCCATGGATGTAACAACAGGATCAACGAGTGGGTAAAATCAACTTGCAACCTCAAAAAAAAAAAAAAAAA]

[-] EMBL CA762556             [AGACATTCTTTGCCTCATTTCAGAGGCTGCTAAAGAAACAATGTGGCAATCGAGCTACTTGGGAGTACCCATTTGCAGTTGCTGGTGTAAATATCACATTCATGATCATGCAGATGCTGGATCTCCAATCTACTAAGCCAAGAACGTTTGTTCGAGCTGTTTTTATCCAAATGCTGTCAGAGGATGAGTGGGCATTTGATCTCCTCTANTGCGTCGCGTCCGTTGTTATGGACAAGCAGTGGCTCGACAAGAACGCCTCCTACATGGACTTCAATGAGATACTGAAGTCGACACGGACACAGCTGGAGAGGGAGCTTTTGCTGGATGATGTGATGCGGATCGAAGACATGCCGTCATACAGCCTGCTTTGCTAGTAGTGGCCATACTGGTTGAACAATCATGATTGAGTCAATGGTTCTGACCTCTGAGTGTATAGCCCCCTCCCTTTTGTTGATTCCAGGGAAGGGAATTTTTGATGGCATGTAGAGCAATGGCCTCCTATTGTCATGCTGAACTTGTCCCACTGTAAACAACTTATCTGGGCATCACCACAATGAATTAGAATTGCTAGCATCCAATGTCAAAGCTGGTGTTAATCTGTCATATTTTACCCCATGGATGTAACAACAGGATCAACGAGTGGGTAAAATCAACTTGCAACCTCAAAAAAAAAAAAAAAAA]


>consensus_11050#1 AGACATTCTTTGCCTCATTTCAGAGGCTGCTAAAGAAACAATGTGGCAATCGAGCTACTT GGGAGTACCCATTTGCAGTTGCTGGTGTAAATATCACATTCATGATCATGCAGATGCTGG ATCTCCAATCTACTAAGCCAAGAACGTTTGTTCGAGCTGTTTTTATCCAAATGCTGTCAG AGGATGAGTGGGCATTTGATCTCCTCTANTGCGTCGCGTCCGTTGTTATGGACAAGCAGT GGCTCGACAAGAACGCCTCCTACATGGACTTCAATGAGATACTGAAGTCGACACGGACAC AGCTGGAGAGGGAGCTTTTGCTGGATGATGTGATGCGGATCGAAGACATGCCGTCATACA GCCTGCTTTGCTAGTAGTGGCCATACTGGTTGAACAATCATGATTGAGTCAATGGTTCTG ACCTCTGAGTGTATAGCCCCCTCCCTTTTGTTGATTCCAGGGAAGGGAATTTTTGATGGC ATGTAGAGCAATGGCCTCCTATTGTCATGCTGAACTTGTCCCACTGTAAACAACTTATCT GGGCATCACCACAATGAATTAGAATTGCTAGCATCCAATGTCAAAGCTGGTGTTAATCTG TCATATTTTACCCCATGGATGTAACAACAGGATCAACGAGTGGGTAAAATCAACTTGCAA CCTCAAAAAAAAAAAAAAAAA



consensusID : consensus_11050#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 671
fasta sequence
                              [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAATTTGGAACCTTCTAGACAAGAACATCAGGTAAATCTTGGACTAGCAATAAGCCAATAAATGAATTCATACAATATGGTACATTTCCCTCTGTCTAACTGCAGGGGAAATGTAAACTTGCTATCACACACTATCCAAGGCTGTAGCTGGAAATAATTATTTTGGCACTGAACATGATCAGCAAATAAAATCATGCATAACAATCAGGGAACTCCTCAGTTTTGGAATTGATGACACTGATTTGACTAGAGGACCACAAAGTTACCTGGGAGGAACATGGACCCGGATACTTTGATGGAAGTTTCTTTGGATTGAAATCACCTGAATCCTGATAAATAGCAAATTATGATGATAGGAAGCATTGAAAGCTCTTTGGCATGCAACATATCCCGACCAAAAACTACAAGGTTTGATTTCTGAACAGGGGAAGGACATGGGATGGCAAGGAAAAAACCCATCAACTGACTTCAGGTACTCCAAACTAAAACTTGCCACCTGACAGATTAGCTCCAAAAATATGTTCAGCTGGTGGGAAGTTAAGTGAAAATGCACTACATGGTGCAGAGGCGCAGGATTCATATCTCTGGAGAATCTTCTATTCTTCGCGAAGACTTCTCTGGAAGCAATTCTTCATC]

[+] EMBL CA762552             [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAATTTGGAACCTTCTAGACAAGAACATCAGGTAAATCTTGGACTAGCAATAAGCCAATAAATGAATTCATACAATATGGTACATTTCCCTCTGTCTAACTGCAGGGGAAATGTAAACTTGCTATCACACACTATCCAAGGCTGTAGCTGGAAATAATTATTTTGGCACTGAACATGATCAGCAAATAAAATCATGCATAACAATCAGGGAACTCCTCAGTTTTGGAATTGATGACACTGATTTGACTAGAGGACCACAAAGTTACCTGGGAGGAACATGGACCCGGATACTTTGATGGAAGTTTCTTTGGATTGAAATCACCTGAATCCTGATAAATAGCAAATTATGATGATAGGAAGCATTGAAAGCTCTTTGGCATGCAACATATCCCGACCAAAAACTACAAGGTTTGATTTCTGAACAGGGGAAGGACATGGGATGGCAAGGAAAAAACCCATCAACTGACTTCAGGTACTCCAAACTAAAACTTGCCACCTGACAGATTAGCTCCAAAAATATGTTCAGCTGGTGGGAAGTTAAGTGAAAATGCACTACATGGTGCAGAGGCGCAGGATTCATATCTCTGGAGAATCTTCTATTCTTCGCGAAGACTTCTCTGGAAGCAATTCTTCATC]


>consensus_11050#2 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAATTTGGAACCTTCTAGACAAGAA CATCAGGTAAATCTTGGACTAGCAATAAGCCAATAAATGAATTCATACAATATGGTACAT TTCCCTCTGTCTAACTGCAGGGGAAATGTAAACTTGCTATCACACACTATCCAAGGCTGT AGCTGGAAATAATTATTTTGGCACTGAACATGATCAGCAAATAAAATCATGCATAACAAT CAGGGAACTCCTCAGTTTTGGAATTGATGACACTGATTTGACTAGAGGACCACAAAGTTA CCTGGGAGGAACATGGACCCGGATACTTTGATGGAAGTTTCTTTGGATTGAAATCACCTG AATCCTGATAAATAGCAAATTATGATGATAGGAAGCATTGAAAGCTCTTTGGCATGCAAC ATATCCCGACCAAAAACTACAAGGTTTGATTTCTGAACAGGGGAAGGACATGGGATGGCA AGGAAAAAACCCATCAACTGACTTCAGGTACTCCAAACTAAAACTTGCCACCTGACAGAT TAGCTCCAAAAATATGTTCAGCTGGTGGGAAGTTAAGTGAAAATGCACTACATGGTGCAG AGGCGCAGGATTCATATCTCTGGAGAATCTTCTATTCTTCGCGAAGACTTCTCTGGAAGC AATTCTTCATC



consensusID : consensus_11050#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 538
fasta sequence
                              [NNTNGAAACGAATTTGTNNNNNCTNNGTTCCCCCAGAGGATGAGTGGGCATTTGATCTNNNCTACTGCGTCGCGTTCGTTGTTATGGACAAGCAGTGGCTCGACAAGAACGCCTCCTACATGGACTTCAATGTAATTTTCCTGTCAATGTACATGCCATATTTTCTCCGTAACTCATCAGATTGCATTGTTTTGACCGATCTTGCGATTCTGTTGTGATTCAGGAGATACTGAAGTCGACACGGACACAGCTGGAGAGGGAGCTTCTGCTGGATGATGTGATGCGGATCGAAGACATGCCGTCATACAGCCTGCTCTGCTAGTAGTGGCCATACTGGTTGAACAATCATGATTGAGTCAATGGTTCTGACCTCTGAGTGTATAGCCCCCTCCCTTTTGTTGATTCCAGGGAAGGGAATTTTTGATGGCATGTAGAGCAATGGCCTCCTATTGTCATGCTGAACTTGTCCCACTGTAAACAACTCATCTGGGCATCACCACAATGAATTAGAATTGCTAGCATCCAATGTCAAAGCTGG]

[-] EMBL CF197289             [NNTNGAAACGAATTTGTNNNNNCTNNGTTCCCCCAGAGGATGAGTGGGCATTTGATCTNNNCTACTGCGTCGCGTTCGTTGTTATGGACAAGCAGTGGCTCGACAAGAACGCCTCCTACATGGACTTCAATGTAATTTTCCTGTCAATGTACATGCCATATTTTCTCCGTAACTCATCAGATTGCATTGTTTTGACCGATCTTGCGATTCTGTTGTGATTCAGGAGATACTGAAGTCGACACGGACACAGCTGGAGAGGGAGCTTCTGCTGGATGATGTGATGCGGATCGAAGACATGCCGTCATACAGCCTGCTCTGCTAGTAGTGGCCATACTGGTTGAACAATCATGATTGAGTCAATGGTTCTGACCTCTGAGTGTATAGCCCCCTCCCTTTTGTTGATTCCAGGGAAGGGAATTTTTGATGGCATGTAGAGCAATGGCCTCCTATTGTCATGCTGAACTTGTCCCACTGTAAACAACTCATCTGGGCATCACCACAATGAATTAGAATTGCTAGCATCCAATGTCAAAGCTGG]


>consensus_11050#3 NNTNGAAACGAATTTGTNNNNNCTNNGTTCCCCCAGAGGATGAGTGGGCATTTGATCTNN NCTACTGCGTCGCGTTCGTTGTTATGGACAAGCAGTGGCTCGACAAGAACGCCTCCTACA TGGACTTCAATGTAATTTTCCTGTCAATGTACATGCCATATTTTCTCCGTAACTCATCAG ATTGCATTGTTTTGACCGATCTTGCGATTCTGTTGTGATTCAGGAGATACTGAAGTCGAC ACGGACACAGCTGGAGAGGGAGCTTCTGCTGGATGATGTGATGCGGATCGAAGACATGCC GTCATACAGCCTGCTCTGCTAGTAGTGGCCATACTGGTTGAACAATCATGATTGAGTCAA TGGTTCTGACCTCTGAGTGTATAGCCCCCTCCCTTTTGTTGATTCCAGGGAAGGGAATTT TTGATGGCATGTAGAGCAATGGCCTCCTATTGTCATGCTGAACTTGTCCCACTGTAAACA ACTCATCTGGGCATCACCACAATGAATTAGAATTGCTAGCATCCAATGTCAAAGCTGG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_11050#0      GCAAAGGTTTGTGTGTGTCAGAGTCACTAGGCCTAGCTAGCTCCATCAGTTTTGGCTCTG 60
consensus_11050#1      ------------------------------------------------------------
consensus_11050#3      ------------------------------------------------------------
consensus_11050#2      ------------------------------------------------------------
                                                                                   

consensus_11050#0      GGATGGTGCTGGGGCAGCTTGCACTGTGGTCCAAGATTGCCAGATGAAGCATCCTGTGGG 120
consensus_11050#1      ------------------------------------------------------------
consensus_11050#3      ------------------------------------------------------------
consensus_11050#2      ------------------------------------------------------------
                                                                                   

consensus_11050#0      TCACCAAGATGGATAGGGAAGAGCCTCTCTTGCGTATGCATCAAGAGAAAAGGAGCCTAT 180
consensus_11050#1      ------------------------------------------------------------
consensus_11050#3      ------------------------------------------------------------
consensus_11050#2      ------------------------------------------------------------
                                                                                   

consensus_11050#0      GAGAGAATATGCATGAACCTTACACCAGTGCAGGAAGAGAGGCTTCAGAGGCTGAGGCAC 240
consensus_11050#1      ------------------------------------------------------------
consensus_11050#3      ------------------------------------------------------------
consensus_11050#2      ------------------------------------------------------------
                                                                                   

consensus_11050#0      CGTATGAAGGTTTATTTTGATCCTTCTAGACGAGATCATCAGGAAGCATTGAGAGCTCTT 300
consensus_11050#1      ------------------------------------------------------------
consensus_11050#3      ------------------------------------------------------------
consensus_11050#2      ------------------------------------------------------------
                                                                                   

consensus_11050#0      TGGCATGCAACATATCCTGACCAAGAACTACAAGGTTTGATTTCTGAACAGTGGAAGGAC 360
consensus_11050#1      ------------------------------------------------------------
consensus_11050#3      ------------------------------------------------------------
consensus_11050#2      ------------------------------------------------------------
                                                                                   

consensus_11050#0      ATGGGATGGCAAGGAAGAGACCCATCAACTGACTTCAGAGGCGCAGGATTCATATCTCTG 420
consensus_11050#1      ------------------------------------------------------------
consensus_11050#3      ------------------------------------------------------------
consensus_11050#2      ------------------------------------------------------------
                                                                                   

consensus_11050#0      GAGAATCTTCTATTCTTCGCGAAGACATTCTCTGCCTCATTTCAGAGGCTGCTAAAGAAA 480
consensus_11050#1      ----------------------AGACATTCTTTGCCTCATTTCAGAGGCTGCTAAAGAAA 38
consensus_11050#3      -------------------------------------------------NNTNGAAACGA 11
consensus_11050#2      --TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAATTTGGAACCTTCTAGACAAG 58
                                                                              *    

consensus_11050#0      CA-ATGTGGCAATCGAGCTACTGGGGAGTACCCATTTGCAGTGC--TGGGTGTAA-ATAT 536
consensus_11050#1      CA-ATGTGGCAATCGAGCTACTTGGGAGTACCCATTTGCAGTTG--CTGGTGTAA-ATAT 94
consensus_11050#3      AT-TTGTNNNNNCTNNGTTCCCCCAGAGGATGAGTGGGCATTTGATCTNNNCTACTGCGT 70
consensus_11050#2      AACATCAGGTAAATCTTGGACTAGCAATAAGCCA---ATAAATGAATTCATACAATATGG 115
                           *               *     *  *         *             *      

consensus_11050#0      CACATTCATGATCATGCAGATGCTGGATCTCCAATCTACTAAGCCAAGAACGTTTGTTCG 596
consensus_11050#1      CACATTCATGATCATGCAGATGCTGGATCTCCAATCTACTAAGCCAAGAACGTTTGTTCG 154
consensus_11050#3      CGCGTTCGTTGTTATGGACAAGCAGTGGCTC-----------GACAAGAACGCCTCCTAC 119
consensus_11050#2      TACATTTCCCTCTGTCTAACTGCAGGGG-------------AAATGTAAACTTGCTATCA 162
                         * **        *  *   ** *                       ***      *  

consensus_11050#0      AGCTGTTTTTATCCAAATG--CTGTCAGAGGATGAGTGGGCATTTGATCTCCTTTANTGC 654
consensus_11050#1      AGCTGTTTTTATCCAAATG--CTGTCAGAGGATGAGTGGGCATTTGATCTCCTCTANTGC 212
consensus_11050#3      ATGGACTTCAATGTAATTTTCCTGTCAATGTACATGC---CATATTTTCTCCGTAACTCA 176
consensus_11050#2      CACACTATCCAAGGCTGTAG-CTGGAAATAATTATTTTGGCAC-TGAACATGATCAGCAA 220
                              *  *      *   ***  *             **  *   *      *    

consensus_11050#0      GTCGCGTTCGTTGTTATGGACAAGCAGTGGCTCGACAAGAACGCCTCCTACATGGACTTC 714
consensus_11050#1      GTCGCGTCCGTTGTTATGGACAAGCAGTGGCTCGACAAGAACGCCTCCTACATGGACTTC 272
consensus_11050#3      TCAGATTGCATTGTTTTGACCGATC------TTG-------CGATTCTGTTGTGA--TTC 221
consensus_11050#2      ATAAAATCATGCATAACAATCAGGGAACTCCTCAGTTTTGGAATTGATGACACTGATTTG 280
                             *      *      *          *                         ** 

consensus_11050#0      AATGAGATACTG--AAGTCGACACGGACACAGCTGGAGAGGGAGCTTCTGCTGGATGATG 772
consensus_11050#1      AATGAGATACTG--AAGTCGACACGGACACAGCTGGAGAGGGAGCTTTTGCTGGATGATG 330
consensus_11050#3      AG-GAGATACTG--AAGTCGACACGGACACAGCTGGAGAGGGAGCTTCTGCTGGATGATG 278
consensus_11050#2      ACTAGAGGACCACAAAGTTACCTGGGAGGAACATGGACCCGGATACTTTGATGGAAGTTT 340
                       *       **    ****   *  ***   *  ****   ***   * ** **** * * 

consensus_11050#0      T----GATGCGGATCGAAGACATGCCGTCATACAGCCTGCTCTGCTAGTAGTGGCCATAC 828
consensus_11050#1      T----GATGCGGATCGAAGACATGCCGTCATACAGCCTGCTTTGCTAGTAGTGGCCATAC 386
consensus_11050#3      T----GATGCGGATCGAAGACATGCCGTCATACAGCCTGCTCTGCTAGTAGTGGCCATAC 334
consensus_11050#2      CTTTGGATTGAAATCACCTGAATCCTGATAAATAGCAAATTATGATGATAGGAAGCAT-- 398
                            ***    ***      ** * *  * * ***    * ** *  ***    ***  

consensus_11050#0      TGGTTGAACAATCATGATTGAGTCAATGGTTCTGACCTCTGAGTGTATAGCCCCCTCCCT 888
consensus_11050#1      TGGTTGAACAATCATGATTGAGTCAATGGTTCTGACCTCTGAGTGTATAGCCCCCTCCCT 446
consensus_11050#3      TGGTTGAACAATCATGATTGAGTCAATGGTTCTGACCTCTGAGTGTATAGCCCCCTCCCT 394
consensus_11050#2      ----TGAAAGCTCTTTGGCATGCAACATATCCCGACCAAAAACTACAAGG-----TTTGA 449
                           ****   ** *      *  *    * * ****    * *  *  *     *    

consensus_11050#0      TTTGTTGATTCCAGGGAAGGGAATTTTTGATGGCATGTAGAGCAATGGCCTCCTATTGTC 948
consensus_11050#1      TTTGTTGATTCCAGGGAAGGGAATTTTTGATGGCATGTAGAGCAATGGCCTCCTATTGTC 506
consensus_11050#3      TTTGTTGATTCCAGGGAAGGGAATTTTTGATGGCATGTAGAGCAATGGCCTCCTATTGTC 454
consensus_11050#2      TTTCTGAA---CAGGGGAAGGA-CATGGGATGGCAAGGAAAAAACCCATCAACTGACTTC 505
                       *** *  *   ***** * ***   *  ******* * * *  *     *  **    **

consensus_11050#0      ATGCTGAACTTGTCCCACTGTAAACAACTCATCTGGGCATCACCCCAATGAATTAGAATT 1008
consensus_11050#1      ATGCTGAACTTGTCCCACTGTAAACAACTTATCTGGGCATCACCACAATGAATTAGAATT 566
consensus_11050#3      ATGCTGAACTTGTCCCACTGTAAACAACTCATCTGGGCATCACCACAATGAATTAGAATT 514
consensus_11050#2      AGGT--ACTCCAAACTAAAACTTGCCACCTGACAGATTAGCTCCAAAAATATGTTCAGCT 563
                       * *   *       * *       * **    * *   * * **  **  *  *  *  *

consensus_11050#0      GCTAGCATCCAATGTCAAAGCTGGTGTTAATCTGTCATATTTTACCCCATGGATGTAACA 1068
consensus_11050#1      GCTAGCATCCAATGTCAAAGCTGGTGTTAATCTGTCATATTTTACCCCATGGATGTAACA 626
consensus_11050#3      GCTAGCATCCAATGTCAAAGCTGG------------------------------------ 538
consensus_11050#2      GGTGGGAAGTTAAGTGAAAAT--GCACTACATGGTGCAGAGGCGCAGGATTCATATCTCT 621
                       * * * *    * ** ***    *                                    

consensus_11050#0      ACAGAATCAACGAGTGGGTAAAATCAACTTGCAACCTCTGGTGAATGGTGTTCAATGGAT 1128
consensus_11050#1      ACAGGATCAACGAGTGGGTAAAATCAACTTGCAACCTCAAAAAAAAAAAAAAAAA----- 681
consensus_11050#3      ------------------------------------------------------------
consensus_11050#2      GGAGAATCTTCTATTCTTCGCGAA-GACTT-----CTCTGGAAGCAATTCTTCATC---- 671
                                                                                   

consensus_11050#0      CCTCATTTCCTTAAAAAAAAAAAAAAAA 1156
consensus_11050#1      ----------------------------
consensus_11050#3      ----------------------------
consensus_11050#2      ----------------------------
                                                   




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)