These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11056#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 968 fasta sequence [TCCGCACCAAACTCCTCGTGGTGGTTTCGCAGCTCTCCTGCGAGCGAATTCTAGGGTTTGGGAGGAAATCCAATCCCTCCAAATCCGGATTCGTTTTGGAAGACGTTTTGGAGGAGGTAGCATGAGCTCGGCGCAGGATCCGTTCTACATCGTCCGGGAGGAGATCCAGGACTCGATTGATAAGTTGCAAACTACTTTCCATCGATGGGAGAAAACACCGTCAAACACA-GGAGAACAT-GTTCATT-T-GA-CAAAGGAGCTTCATACCAGCTGTGAAAGCATTGAGTGGCAGGTGGATGAGTTGGAAAAGACAATCTTAGTTGCATCAAGAGATCCAGCGTACTATGGACTGGACGAAGTTGAGCTTTCTAGACGACGGAACTGGATTGGTTCTGCTCGTAATCAGGTTGCTGCAGTCAGGAGATCTGTTGAAAAGGGGAAGAGTAATTCAACTTTCTCGGCGCACCAAGACATGGGCACAAGCAGAAGTAACCACTACACTGCACAAGACAATGATGACTTCATTGCTTCAGAATCAGA-TAGACAGCTTCTACTTATGAGGCAGCA-GGATGAGGAACTTGAT-GAGC-TTAGCG-AAAGTGTTCAAAGGATT-GGT-GGT-GTAGGG-CTAACCATA-CACGAAGAGCTGTCTGGACAGGAAAGGATCTTA-A-ACG-ACCTAAGCTTGGAGATGGAAACTACTTCAAACAGACTTGACTTCGTGCAGAAAAGAGTGGCGA-TGGTCATGAAAAAGGCTGGCATAAAAGGGCAGATTATGCTGATCCTCTTCCTTGTGGTTCTGTTCATTATACTTTTCGTGTTGGTGTTCTTGACATAACGCACTAGTGTTCCAAGCCTCGTGTTTTGCGGCTGTACCTACCTACTGTAAGCTGTGGAGAACAGAAAACAAATACACGAGTTGCTCATATCTTTCAAATCCTACCTGATTATTGCTCCATCGTTAAAAAAAAAAAAAAAAA] [+] EMBL CF297106 [TCCGCACCAAACTCCTCGTGGTGGTTTCGCAGCTCTCCTGCGAGCGAATTCTAGGGTTTGGGAGGAAATCCAATCCCTCCAAATCCGGATTCGTTTTGGAAGACGTTTTGGAGGAGGTAGCATGAGCTCGGCGCAGGATCCGTTCTACATCGTCCGGGAGGAGATCCAGGACTCGATTGATAAGTTGCAAACTACTTTCCATCGATGGGAGAAAACACCGTCAAACACA GGAGAACAT GTTCATT T GA CAAAGGAGCTTCATACCAGCTGTGAAAGCATTGAGTGGCAGGTGGATGAGTTGGAAAAGACAATCTTAGTTGCATCAAGAGATCCAGCGTACTATGGACTGGACGAAGTTGAGCTTTCTAGACGACGGAACTGGATTGGTTCTGCTCGTAATCAGGTTGCTGCAGTCAGGAGATCTGTTGAAAAGGGGAAGAGTAATTCAACTTTCTCGGCGCACCAAGACATGGGCACAAGCAGAAGTAACCACTACACTGCACAAGACAATGATGACTTCATTGCTTCAGAATCAGA TAGACAGCTT ] [+] EMBL AK067544 [ CTCCTCGTGGTGGTTTCGCAGCTCTCCTGCGAGCGAATTCTAGGGTTTGGGAGGAAATCCAATCCCTCCAAATCCGGATTCGTTTTGGAAGACGTTTTGGAGGAGGTAGCATGAGCTCGGCGCAGGATCCGTTCTACATCGTCCGGGAGGAGATCCAGGACTCGATTGATAAGTTGCAAACTACTTTCCATCGATGGGAGAAAACACCGTCAAACACA GGAGAACAT GTTCATT T GA CAAAGGAGCTTCATACCAGCTGTGAAAGCATTGAGTGGCAGGTGGATGAGTTGGAAAAGACAATCTTAGTTGCATCAAGAGATCCAGCGTACTATGGACTGGACGAAGTTGAGCTTTCTAGACGACGGAACTGGATTGGTTCTGCTCGTAATCAGGTTGCTGCAGTCAGGAGATCTGTTGAAAAGGGGAAGAGTAATTCAACTTTCTCGGCGCACCAAGACATGGGCACAAGCAGAAGTAACCACTACACTGCACAAGACAATGATGACTTCATTGCTTCAGAATCAGA TAGACAGCTTCTACTTATGAGGCAGCA GGATGAGGAACTTGAT GAGC TTAGCG AAAGTGTTCAAAGGATT GGT GGT GTAGGG CTAACCATA CACGAAGAGCTGTCTGGACAGGAAAGGATCTTA A ACG ACCTAAGCTTGGAGATGGAAACTACTTCAAACAGACTTGACTTCGTGCAGAAAAGAGTGGCGA TGGTCATGAAAAAGGCTGGCATAAAAGGGCAGATTATGCTGATCCTCTTCCTTGTGGTTCTGTTCATTATACTTTTCGTGTTGGTGTTCTTGACATAACGCACTAGTGTTCCAAGCCTCGTGTTTTGCGGCTGTACCTACCTACTGTAAGCTGTGGAGAACAGAAAACAAATACACGAGTTGCTCATATCTTTCAAATCCTACCTGA ] [+] EMBL AU101806 [ GCAGCTCTCCTGCGAGCGAATTCTAGGGTTTGGGAGGAAATCCAATCCCTCCAAATCCGGATTCGTTTTGGAAGACGTTTTGGAGGAGGTAGCATGAGCTCGGCGCAGGATCCGTTCTACATCGTCCGGGAGGAGATCCAGGACTCGATTGATAAGTTGCAAACTACTTTCCATCGATGGGAGAAAACACCGTCAAACACAGGGAGAACATGGTTCATTGTCGACCAAAGcg ] [+] EMBL AU183871 [ CTCTCCTGCGAGCGAATTCTAGGGTTTGGGATGAAATCCAATCCCTCCAAATCCGGATTCGTTTTGGAAGACGTTTTGGAGGAGGTAGCATGAGCTCGGCGCAGGATCCGTTCTACATCNTCCGGGAGGAGATCCAGGACTCGATTGATAAGTTGCAAACTACTTTCCATCGATGGGAGAAAACACCGTCAAACACA GGAGAACAT GTTCATT T GA CAAAGGAGCTTCATACCAGCTGTGAAAGCATTGAGTGGCAGGTGGATGAGTTGGAAAAGACAATCTTAGTTGCATCAAGAGATCCAGCGTACTATGGACTGGACGAAGTTGAGCTTTCTAGACGACGGAACTGGATTGGTTCTGCTCGTAATCAGGTTGCTGCAGTCAGGAGATCTGTTGAAAAGGGGAAGAGTAATTCAACTTTCTCGGCGCACCAAGACATGGGCACAAGCAGAAGTAACCACTACACTGCACAAGACAATGATGACTTCATTGCTTCAGAATCAGA TAGACAGCTTCTACTTATGAGGCAGCA GGATGAGGAACTTGAT GAGC TTAGCG AAAGTGTTCAAAGG ] [+] EMBL AU101807 [ TGATGACTTCATTGCTTCAGAATCAGATTAGACAGCTTCTACTTATGAGGCAGCA GGATGAGGAACTTGATCGAGCTTTAGCGAAAAGTGTTCAAAGGATTCGGTNGGTCGTAGGGCCTAACCATA CACGAAGAGCTGTCTGGACAGGAAAGGATCTTA A ACGNACCTAAGCTTGGAGATGGAAACTACTTCAAACAGACTTGACTTCGTGCAGAAAAGAGTGGCGA TGGTCATGAAAAAGGCTGGCATAAAAGGGCAGATTATGCTGATCCTCTTCCTTGTGGTTCTGTTCATTATACTTTTCGTGTTGGTGTTCTTGACATAACGCACTAGTGTTCCAAGCCTCGTGTTTTGCGGCTGTACCTACCTACTGTAAGCTGTGGAGAACAGAAAACAAATACACGAGTTGCTCATATCTTTCAAATCCTACCTGATTATTGCTCCA AAAAAAA ] [+] EMBL BM038797 [ CAGA TAGACAGCTTCTACTTATGAGGCAGCACGGATGAGGAACTTGAT GAGC TTAGCG AAAGTGTTCAAAGGATT GGT GGT GTAGGG CTAACCATAGCGCGAAGAGCTGTCTGGACAGGAAAGGATCTTANAGACG ACCTAAGCTTGGAGATGGAAACTACTTCAAACAGACTTGACTTCGTGCAGAAAAGAGTGGCGAGTGGTCATGAAAAAGGCTGGCATAAAAGGGCAGATTATGCTGATCCTCTTCCTTGTGGTTCTGTTCATTATACTTTTCGTGTTGGTGTTCTTGACATAACGCACTAGTGTTCCAAGCCTCGTGTTTTGCGGCTGTACCTACCTACTGTAAGCTGTGGAGAACAGAAAAC AATACACGAGTTGCTCATATCTTTC AATCCTACCTGATTATTGCTCCATCGTTAAAAAAAA ] [-] EMBL CF297105 [ ATGAGGAACTTGAT GAGT TTAGCG AAAGTGTTCAAAGGATT GGT GGT GTAGGG CTACCCATA CACGAAGAGCTGTTTGGACAGGAAAGGTTTTTA A ACG CCCTAAGCTTGGAGATGGAAATTATTTCAAACAGATTTGATTTGGTGCAGAAAAGAGTGGCGA TGGTCATGAAAAAGGCTGGCATAAAAGGGCAGATTATGCTGATCCTCTTCCTTGGGGTTCTGTTCATTAAACTTTTGGGGTGGGTGTTCTTGACATAACGCATTAGTGTTCCAAGCCTCGTGTTTTGCGGCTGTCCCTCCCTACTGTAAGCTGTGGAGACCAGAAAACAAATACACGAGTTGTTCATATCTTTCAAATCCTCCCTGATTATTGCTCCAAAAAAAAAAAAAAAAAAAAAAA] consensusID : consensus_11056#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 681 fasta sequence [GGTCTGGTCAACCTGTAAAGCATGTGTGCCAGGGGATAAGTTGGAAAGGCAATCTTAGTGCCTCAAGAGGTCCAGCGTCCTATGGCCGGGACGAAGTGAGCTTTTTAGCCGACGAACCGGATGGTTCTGGTGGTAATCAGGTTGGTGCAGTCAGGAGATCTGGTAAAAGGGGAAGAGTAATTCACCTTTCTGGGCGCACCAAGACATGGGCACAAGCAGAAGTAACCACTACACTGCACAAGACAATGATGACTTCATTGCTTCAGAATCAGATAGACAGCTTCTACTTATGAGGCAGCAGGATGAGGAACTTGATGAGCTTAGCGAAAGTGTTCAAAGGATTGGTGGTGTAGGGCTAACCATACACGAAGAGCTGTCTGGACAGGAAAGGATCTTAAACGACCTAAGCTTGGAGATGGAAACTACTTCAAACAGACTTGACTTCGTTCAGAAAAGAGTGGCGATGGTCATGAAAAAGGCTGGCATAAAAGGGCAGATTATGCTGATCCTCTTCCTTGTGGTTCTGTTCATTATACTTTTCGTGTTGGTGTTCTTGACATAACGCACTAGTGTTCCAAGCCTCGTGTTTTGCGGCTGTACCTACCTACTGTAAGCTGTGGAGAACAGAAAACAAATACCCGAGTTGCTCATATCTTTCAAATCCTCAAAAAAAAAAAAAAA] [-] EMBL CA763109 [GGTCTGGTCAACCTGTAAAGCATGTGTGCCAGGGGATAAGTTGGAAAGGCAATCTTAGTGCCTCAAGAGGTCCAGCGTCCTATGGCCGGGACGAAGTGAGCTTTTTAGCCGACGAACCGGATGGTTCTGGTGGTAATCAGGTTGGTGCAGTCAGGAGATCTGGTAAAAGGGGAAGAGTAATTCACCTTTCTGGGCGCACCAAGACATGGGCACAAGCAGAAGTAACCACTACACTGCACAAGACAATGATGACTTCATTGCTTCAGAATCAGATAGACAGCTTCTACTTATGAGGCAGCAGGATGAGGAACTTGATGAGCTTAGCGAAAGTGTTCAAAGGATTGGTGGTGTAGGGCTAACCATACACGAAGAGCTGTCTGGACAGGAAAGGATCTTAAACGACCTAAGCTTGGAGATGGAAACTACTTCAAACAGACTTGACTTCGTTCAGAAAAGAGTGGCGATGGTCATGAAAAAGGCTGGCATAAAAGGGCAGATTATGCTGATCCTCTTCCTTGTGGTTCTGTTCATTATACTTTTCGTGTTGGTGTTCTTGACATAACGCACTAGTGTTCCAAGCCTCGTGTTTTGCGGCTGTACCTACCTACTGTAAGCTGTGGAGAACAGAAAACAAATACCCGAGTTGCTCATATCTTTCAAATCCTCAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_11056#0 TCCGCACCAAACTCCTCGTGGTGGTTTCGCAGCTCTCCTGCGAGCGAATTCTAGGGTTTG 60 consensus_11056#1 ------------------------------------------------------------ consensus_11056#0 GGAGGAAATCCAATCCCTCCAAATCCGGATTCGTTTTGGAAGACGTTTTGGAGGAGGTAG 120 consensus_11056#1 ------------------------------------------------------------ consensus_11056#0 CATGAGCTCGGCGCAGGATCCGTTCTACATCGTCCGGGAGGAGATCCAGGACTCGATTGA 180 consensus_11056#1 ------------------------------------------------------------ consensus_11056#0 TAAGTTGCAAACTACTTTCCATCGATGGGAGAAAACACCGTCAAACACAGGAGAACATGT 240 consensus_11056#1 ------------------------------------------------------------ consensus_11056#0 TCATTTGACAAAGGAGCTTCATACCAGCTGTGAAAGCATTGAGTGGCAGGTGGATGAGTT 300 consensus_11056#1 ---------------GGTCTGGTCAACCTGT-AAAGCAT-GTGTGCCAGG-GGATAAGTT 42 * * * * **** ******* * *** **** **** **** consensus_11056#0 GGAAAAGACAATCTTAGTTGCATCAAGAGATCCAGCGTACTATGGACTGGACGAAGTTGA 360 consensus_11056#1 GGAAAGG-CAATCTTAGT-GCCTCAAGAGGTCCAGCGTCCTATGGCCGGGACGAAGT-GA 99 ***** * ********** ** ******* ******** ****** * ********* ** consensus_11056#0 GCTTTCTAGACGACGGAACTGGATTGGTTCTGCTCGTAATCAGGTTGCTGCAGTCAGGAG 420 consensus_11056#1 GCTTTTTAGCCGACG-AACCGGAT-GGTTCTGGTGGTAATCAGGTTGGTGCAGTCAGGAG 157 ***** *** ***** *** **** ******* * ************ ************ consensus_11056#0 ATCTGTTGAAAAGGGGAAGAGTAATTCAACTTTCTCGGCGCACCAAGACATGGGCACAAG 480 consensus_11056#1 ATCTGGT-AAAAGGGGAAGAGTAATTCACCTTTCTGGGCGCACCAAGACATGGGCACAAG 216 ***** * ******************** ****** ************************ consensus_11056#0 CAGAAGTAACCACTACACTGCACAAGACAATGATGACTTCATTGCTTCAGAATCAGATAG 540 consensus_11056#1 CAGAAGTAACCACTACACTGCACAAGACAATGATGACTTCATTGCTTCAGAATCAGATAG 276 ************************************************************ consensus_11056#0 ACAGCTTCTACTTATGAGGCAGCAGGATGAGGAACTTGATGAGCTTAGCGAAAGTGTTCA 600 consensus_11056#1 ACAGCTTCTACTTATGAGGCAGCAGGATGAGGAACTTGATGAGCTTAGCGAAAGTGTTCA 336 ************************************************************ consensus_11056#0 AAGGATTGGTGGTGTAGGGCTAACCATACACGAAGAGCTGTCTGGACAGGAAAGGATCTT 660 consensus_11056#1 AAGGATTGGTGGTGTAGGGCTAACCATACACGAAGAGCTGTCTGGACAGGAAAGGATCTT 396 ************************************************************ consensus_11056#0 AAACGACCTAAGCTTGGAGATGGAAACTACTTCAAACAGACTTGACTTCGTGCAGAAAAG 720 consensus_11056#1 AAACGACCTAAGCTTGGAGATGGAAACTACTTCAAACAGACTTGACTTCGTTCAGAAAAG 456 *************************************************** ******** consensus_11056#0 AGTGGCGATGGTCATGAAAAAGGCTGGCATAAAAGGGCAGATTATGCTGATCCTCTTCCT 780 consensus_11056#1 AGTGGCGATGGTCATGAAAAAGGCTGGCATAAAAGGGCAGATTATGCTGATCCTCTTCCT 516 ************************************************************ consensus_11056#0 TGTGGTTCTGTTCATTATACTTTTCGTGTTGGTGTTCTTGACATAACGCACTAGTGTTCC 840 consensus_11056#1 TGTGGTTCTGTTCATTATACTTTTCGTGTTGGTGTTCTTGACATAACGCACTAGTGTTCC 576 ************************************************************ consensus_11056#0 AAGCCTCGTGTTTTGCGGCTGTACCTACCTACTGTAAGCTGTGGAGAACAGAAAACAAAT 900 consensus_11056#1 AAGCCTCGTGTTTTGCGGCTGTACCTACCTACTGTAAGCTGTGGAGAACAGAAAACAAAT 636 ************************************************************ consensus_11056#0 ACACGAGTTGCTCATATCTTTCAAATCCTACCTGATTATTGCTCCATCGTTAAAAAAAAA 960 consensus_11056#1 ACCCGAGTTGCTCATATCTTTCAAATCCT---------------------CAAAAAAAAA 675 ** ************************** ********* consensus_11056#0 AAAAAAAA 968 consensus_11056#1 AAAAAA-- 681 ****** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||