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Oryza sativa
cluster # 11056 cluster # 11056       Sequences # 8       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_11056#0 length = 968 sequences # 7  
consensus_11056#1 length = 681 sequences # 1  

consensusID : consensus_11056#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 7
consensus length = 968
fasta sequence
                              [TCCGCACCAAACTCCTCGTGGTGGTTTCGCAGCTCTCCTGCGAGCGAATTCTAGGGTTTGGGAGGAAATCCAATCCCTCCAAATCCGGATTCGTTTTGGAAGACGTTTTGGAGGAGGTAGCATGAGCTCGGCGCAGGATCCGTTCTACATCGTCCGGGAGGAGATCCAGGACTCGATTGATAAGTTGCAAACTACTTTCCATCGATGGGAGAAAACACCGTCAAACACA-GGAGAACAT-GTTCATT-T-GA-CAAAGGAGCTTCATACCAGCTGTGAAAGCATTGAGTGGCAGGTGGATGAGTTGGAAAAGACAATCTTAGTTGCATCAAGAGATCCAGCGTACTATGGACTGGACGAAGTTGAGCTTTCTAGACGACGGAACTGGATTGGTTCTGCTCGTAATCAGGTTGCTGCAGTCAGGAGATCTGTTGAAAAGGGGAAGAGTAATTCAACTTTCTCGGCGCACCAAGACATGGGCACAAGCAGAAGTAACCACTACACTGCACAAGACAATGATGACTTCATTGCTTCAGAATCAGA-TAGACAGCTTCTACTTATGAGGCAGCA-GGATGAGGAACTTGAT-GAGC-TTAGCG-AAAGTGTTCAAAGGATT-GGT-GGT-GTAGGG-CTAACCATA-CACGAAGAGCTGTCTGGACAGGAAAGGATCTTA-A-ACG-ACCTAAGCTTGGAGATGGAAACTACTTCAAACAGACTTGACTTCGTGCAGAAAAGAGTGGCGA-TGGTCATGAAAAAGGCTGGCATAAAAGGGCAGATTATGCTGATCCTCTTCCTTGTGGTTCTGTTCATTATACTTTTCGTGTTGGTGTTCTTGACATAACGCACTAGTGTTCCAAGCCTCGTGTTTTGCGGCTGTACCTACCTACTGTAAGCTGTGGAGAACAGAAAACAAATACACGAGTTGCTCATATCTTTCAAATCCTACCTGATTATTGCTCCATCGTTAAAAAAAAAAAAAAAAA]

[+] EMBL CF297106             [TCCGCACCAAACTCCTCGTGGTGGTTTCGCAGCTCTCCTGCGAGCGAATTCTAGGGTTTGGGAGGAAATCCAATCCCTCCAAATCCGGATTCGTTTTGGAAGACGTTTTGGAGGAGGTAGCATGAGCTCGGCGCAGGATCCGTTCTACATCGTCCGGGAGGAGATCCAGGACTCGATTGATAAGTTGCAAACTACTTTCCATCGATGGGAGAAAACACCGTCAAACACA GGAGAACAT GTTCATT T GA CAAAGGAGCTTCATACCAGCTGTGAAAGCATTGAGTGGCAGGTGGATGAGTTGGAAAAGACAATCTTAGTTGCATCAAGAGATCCAGCGTACTATGGACTGGACGAAGTTGAGCTTTCTAGACGACGGAACTGGATTGGTTCTGCTCGTAATCAGGTTGCTGCAGTCAGGAGATCTGTTGAAAAGGGGAAGAGTAATTCAACTTTCTCGGCGCACCAAGACATGGGCACAAGCAGAAGTAACCACTACACTGCACAAGACAATGATGACTTCATTGCTTCAGAATCAGA TAGACAGCTT                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL AK067544             [           CTCCTCGTGGTGGTTTCGCAGCTCTCCTGCGAGCGAATTCTAGGGTTTGGGAGGAAATCCAATCCCTCCAAATCCGGATTCGTTTTGGAAGACGTTTTGGAGGAGGTAGCATGAGCTCGGCGCAGGATCCGTTCTACATCGTCCGGGAGGAGATCCAGGACTCGATTGATAAGTTGCAAACTACTTTCCATCGATGGGAGAAAACACCGTCAAACACA GGAGAACAT GTTCATT T GA CAAAGGAGCTTCATACCAGCTGTGAAAGCATTGAGTGGCAGGTGGATGAGTTGGAAAAGACAATCTTAGTTGCATCAAGAGATCCAGCGTACTATGGACTGGACGAAGTTGAGCTTTCTAGACGACGGAACTGGATTGGTTCTGCTCGTAATCAGGTTGCTGCAGTCAGGAGATCTGTTGAAAAGGGGAAGAGTAATTCAACTTTCTCGGCGCACCAAGACATGGGCACAAGCAGAAGTAACCACTACACTGCACAAGACAATGATGACTTCATTGCTTCAGAATCAGA TAGACAGCTTCTACTTATGAGGCAGCA GGATGAGGAACTTGAT GAGC TTAGCG AAAGTGTTCAAAGGATT GGT GGT GTAGGG CTAACCATA CACGAAGAGCTGTCTGGACAGGAAAGGATCTTA A ACG ACCTAAGCTTGGAGATGGAAACTACTTCAAACAGACTTGACTTCGTGCAGAAAAGAGTGGCGA TGGTCATGAAAAAGGCTGGCATAAAAGGGCAGATTATGCTGATCCTCTTCCTTGTGGTTCTGTTCATTATACTTTTCGTGTTGGTGTTCTTGACATAACGCACTAGTGTTCCAAGCCTCGTGTTTTGCGGCTGTACCTACCTACTGTAAGCTGTGGAGAACAGAAAACAAATACACGAGTTGCTCATATCTTTCAAATCCTACCTGA                                 ]
[+] EMBL AU101806             [                            GCAGCTCTCCTGCGAGCGAATTCTAGGGTTTGGGAGGAAATCCAATCCCTCCAAATCCGGATTCGTTTTGGAAGACGTTTTGGAGGAGGTAGCATGAGCTCGGCGCAGGATCCGTTCTACATCGTCCGGGAGGAGATCCAGGACTCGATTGATAAGTTGCAAACTACTTTCCATCGATGGGAGAAAACACCGTCAAACACAGGGAGAACATGGTTCATTGTCGACCAAAGcg                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL AU183871             [                                CTCTCCTGCGAGCGAATTCTAGGGTTTGGGATGAAATCCAATCCCTCCAAATCCGGATTCGTTTTGGAAGACGTTTTGGAGGAGGTAGCATGAGCTCGGCGCAGGATCCGTTCTACATCNTCCGGGAGGAGATCCAGGACTCGATTGATAAGTTGCAAACTACTTTCCATCGATGGGAGAAAACACCGTCAAACACA GGAGAACAT GTTCATT T GA CAAAGGAGCTTCATACCAGCTGTGAAAGCATTGAGTGGCAGGTGGATGAGTTGGAAAAGACAATCTTAGTTGCATCAAGAGATCCAGCGTACTATGGACTGGACGAAGTTGAGCTTTCTAGACGACGGAACTGGATTGGTTCTGCTCGTAATCAGGTTGCTGCAGTCAGGAGATCTGTTGAAAAGGGGAAGAGTAATTCAACTTTCTCGGCGCACCAAGACATGGGCACAAGCAGAAGTAACCACTACACTGCACAAGACAATGATGACTTCATTGCTTCAGAATCAGA TAGACAGCTTCTACTTATGAGGCAGCA GGATGAGGAACTTGAT GAGC TTAGCG AAAGTGTTCAAAGG                                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL AU101807             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   TGATGACTTCATTGCTTCAGAATCAGATTAGACAGCTTCTACTTATGAGGCAGCA GGATGAGGAACTTGATCGAGCTTTAGCGAAAAGTGTTCAAAGGATTCGGTNGGTCGTAGGGCCTAACCATA CACGAAGAGCTGTCTGGACAGGAAAGGATCTTA A ACGNACCTAAGCTTGGAGATGGAAACTACTTCAAACAGACTTGACTTCGTGCAGAAAAGAGTGGCGA TGGTCATGAAAAAGGCTGGCATAAAAGGGCAGATTATGCTGATCCTCTTCCTTGTGGTTCTGTTCATTATACTTTTCGTGTTGGTGTTCTTGACATAACGCACTAGTGTTCCAAGCCTCGTGTTTTGCGGCTGTACCTACCTACTGTAAGCTGTGGAGAACAGAAAACAAATACACGAGTTGCTCATATCTTTCAAATCCTACCTGATTATTGCTCCA     AAAAAAA          ]
[+] EMBL BM038797             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          CAGA TAGACAGCTTCTACTTATGAGGCAGCACGGATGAGGAACTTGAT GAGC TTAGCG AAAGTGTTCAAAGGATT GGT GGT GTAGGG CTAACCATAGCGCGAAGAGCTGTCTGGACAGGAAAGGATCTTANAGACG ACCTAAGCTTGGAGATGGAAACTACTTCAAACAGACTTGACTTCGTGCAGAAAAGAGTGGCGAGTGGTCATGAAAAAGGCTGGCATAAAAGGGCAGATTATGCTGATCCTCTTCCTTGTGGTTCTGTTCATTATACTTTTCGTGTTGGTGTTCTTGACATAACGCACTAGTGTTCCAAGCCTCGTGTTTTGCGGCTGTACCTACCTACTGTAAGCTGTGGAGAACAGAAAAC AATACACGAGTTGCTCATATCTTTC AATCCTACCTGATTATTGCTCCATCGTTAAAAAAAA         ]
[-] EMBL CF297105             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ATGAGGAACTTGAT GAGT TTAGCG AAAGTGTTCAAAGGATT GGT GGT GTAGGG CTACCCATA CACGAAGAGCTGTTTGGACAGGAAAGGTTTTTA A ACG CCCTAAGCTTGGAGATGGAAATTATTTCAAACAGATTTGATTTGGTGCAGAAAAGAGTGGCGA TGGTCATGAAAAAGGCTGGCATAAAAGGGCAGATTATGCTGATCCTCTTCCTTGGGGTTCTGTTCATTAAACTTTTGGGGTGGGTGTTCTTGACATAACGCATTAGTGTTCCAAGCCTCGTGTTTTGCGGCTGTCCCTCCCTACTGTAAGCTGTGGAGACCAGAAAACAAATACACGAGTTGTTCATATCTTTCAAATCCTCCCTGATTATTGCTCCAAAAAAAAAAAAAAAAAAAAAAA]


>consensus_11056#0 TCCGCACCAAACTCCTCGTGGTGGTTTCGCAGCTCTCCTGCGAGCGAATTCTAGGGTTTG GGAGGAAATCCAATCCCTCCAAATCCGGATTCGTTTTGGAAGACGTTTTGGAGGAGGTAG CATGAGCTCGGCGCAGGATCCGTTCTACATCGTCCGGGAGGAGATCCAGGACTCGATTGA TAAGTTGCAAACTACTTTCCATCGATGGGAGAAAACACCGTCAAACACAGGAGAACATGT TCATTTGACAAAGGAGCTTCATACCAGCTGTGAAAGCATTGAGTGGCAGGTGGATGAGTT GGAAAAGACAATCTTAGTTGCATCAAGAGATCCAGCGTACTATGGACTGGACGAAGTTGA GCTTTCTAGACGACGGAACTGGATTGGTTCTGCTCGTAATCAGGTTGCTGCAGTCAGGAG ATCTGTTGAAAAGGGGAAGAGTAATTCAACTTTCTCGGCGCACCAAGACATGGGCACAAG CAGAAGTAACCACTACACTGCACAAGACAATGATGACTTCATTGCTTCAGAATCAGATAG ACAGCTTCTACTTATGAGGCAGCAGGATGAGGAACTTGATGAGCTTAGCGAAAGTGTTCA AAGGATTGGTGGTGTAGGGCTAACCATACACGAAGAGCTGTCTGGACAGGAAAGGATCTT AAACGACCTAAGCTTGGAGATGGAAACTACTTCAAACAGACTTGACTTCGTGCAGAAAAG AGTGGCGATGGTCATGAAAAAGGCTGGCATAAAAGGGCAGATTATGCTGATCCTCTTCCT TGTGGTTCTGTTCATTATACTTTTCGTGTTGGTGTTCTTGACATAACGCACTAGTGTTCC AAGCCTCGTGTTTTGCGGCTGTACCTACCTACTGTAAGCTGTGGAGAACAGAAAACAAAT ACACGAGTTGCTCATATCTTTCAAATCCTACCTGATTATTGCTCCATCGTTAAAAAAAAA AAAAAAAA



consensusID : consensus_11056#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 681
fasta sequence
                              [GGTCTGGTCAACCTGTAAAGCATGTGTGCCAGGGGATAAGTTGGAAAGGCAATCTTAGTGCCTCAAGAGGTCCAGCGTCCTATGGCCGGGACGAAGTGAGCTTTTTAGCCGACGAACCGGATGGTTCTGGTGGTAATCAGGTTGGTGCAGTCAGGAGATCTGGTAAAAGGGGAAGAGTAATTCACCTTTCTGGGCGCACCAAGACATGGGCACAAGCAGAAGTAACCACTACACTGCACAAGACAATGATGACTTCATTGCTTCAGAATCAGATAGACAGCTTCTACTTATGAGGCAGCAGGATGAGGAACTTGATGAGCTTAGCGAAAGTGTTCAAAGGATTGGTGGTGTAGGGCTAACCATACACGAAGAGCTGTCTGGACAGGAAAGGATCTTAAACGACCTAAGCTTGGAGATGGAAACTACTTCAAACAGACTTGACTTCGTTCAGAAAAGAGTGGCGATGGTCATGAAAAAGGCTGGCATAAAAGGGCAGATTATGCTGATCCTCTTCCTTGTGGTTCTGTTCATTATACTTTTCGTGTTGGTGTTCTTGACATAACGCACTAGTGTTCCAAGCCTCGTGTTTTGCGGCTGTACCTACCTACTGTAAGCTGTGGAGAACAGAAAACAAATACCCGAGTTGCTCATATCTTTCAAATCCTCAAAAAAAAAAAAAAA]

[-] EMBL CA763109             [GGTCTGGTCAACCTGTAAAGCATGTGTGCCAGGGGATAAGTTGGAAAGGCAATCTTAGTGCCTCAAGAGGTCCAGCGTCCTATGGCCGGGACGAAGTGAGCTTTTTAGCCGACGAACCGGATGGTTCTGGTGGTAATCAGGTTGGTGCAGTCAGGAGATCTGGTAAAAGGGGAAGAGTAATTCACCTTTCTGGGCGCACCAAGACATGGGCACAAGCAGAAGTAACCACTACACTGCACAAGACAATGATGACTTCATTGCTTCAGAATCAGATAGACAGCTTCTACTTATGAGGCAGCAGGATGAGGAACTTGATGAGCTTAGCGAAAGTGTTCAAAGGATTGGTGGTGTAGGGCTAACCATACACGAAGAGCTGTCTGGACAGGAAAGGATCTTAAACGACCTAAGCTTGGAGATGGAAACTACTTCAAACAGACTTGACTTCGTTCAGAAAAGAGTGGCGATGGTCATGAAAAAGGCTGGCATAAAAGGGCAGATTATGCTGATCCTCTTCCTTGTGGTTCTGTTCATTATACTTTTCGTGTTGGTGTTCTTGACATAACGCACTAGTGTTCCAAGCCTCGTGTTTTGCGGCTGTACCTACCTACTGTAAGCTGTGGAGAACAGAAAACAAATACCCGAGTTGCTCATATCTTTCAAATCCTCAAAAAAAAAAAAAAA]


>consensus_11056#1 GGTCTGGTCAACCTGTAAAGCATGTGTGCCAGGGGATAAGTTGGAAAGGCAATCTTAGTG CCTCAAGAGGTCCAGCGTCCTATGGCCGGGACGAAGTGAGCTTTTTAGCCGACGAACCGG ATGGTTCTGGTGGTAATCAGGTTGGTGCAGTCAGGAGATCTGGTAAAAGGGGAAGAGTAA TTCACCTTTCTGGGCGCACCAAGACATGGGCACAAGCAGAAGTAACCACTACACTGCACA AGACAATGATGACTTCATTGCTTCAGAATCAGATAGACAGCTTCTACTTATGAGGCAGCA GGATGAGGAACTTGATGAGCTTAGCGAAAGTGTTCAAAGGATTGGTGGTGTAGGGCTAAC CATACACGAAGAGCTGTCTGGACAGGAAAGGATCTTAAACGACCTAAGCTTGGAGATGGA AACTACTTCAAACAGACTTGACTTCGTTCAGAAAAGAGTGGCGATGGTCATGAAAAAGGC TGGCATAAAAGGGCAGATTATGCTGATCCTCTTCCTTGTGGTTCTGTTCATTATACTTTT CGTGTTGGTGTTCTTGACATAACGCACTAGTGTTCCAAGCCTCGTGTTTTGCGGCTGTAC CTACCTACTGTAAGCTGTGGAGAACAGAAAACAAATACCCGAGTTGCTCATATCTTTCAA ATCCTCAAAAAAAAAAAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_11056#0      TCCGCACCAAACTCCTCGTGGTGGTTTCGCAGCTCTCCTGCGAGCGAATTCTAGGGTTTG 60
consensus_11056#1      ------------------------------------------------------------
                                                                                   

consensus_11056#0      GGAGGAAATCCAATCCCTCCAAATCCGGATTCGTTTTGGAAGACGTTTTGGAGGAGGTAG 120
consensus_11056#1      ------------------------------------------------------------
                                                                                   

consensus_11056#0      CATGAGCTCGGCGCAGGATCCGTTCTACATCGTCCGGGAGGAGATCCAGGACTCGATTGA 180
consensus_11056#1      ------------------------------------------------------------
                                                                                   

consensus_11056#0      TAAGTTGCAAACTACTTTCCATCGATGGGAGAAAACACCGTCAAACACAGGAGAACATGT 240
consensus_11056#1      ------------------------------------------------------------
                                                                                   

consensus_11056#0      TCATTTGACAAAGGAGCTTCATACCAGCTGTGAAAGCATTGAGTGGCAGGTGGATGAGTT 300
consensus_11056#1      ---------------GGTCTGGTCAACCTGT-AAAGCAT-GTGTGCCAGG-GGATAAGTT 42
                                      * *     * * **** ******* * *** **** **** ****

consensus_11056#0      GGAAAAGACAATCTTAGTTGCATCAAGAGATCCAGCGTACTATGGACTGGACGAAGTTGA 360
consensus_11056#1      GGAAAGG-CAATCTTAGT-GCCTCAAGAGGTCCAGCGTCCTATGGCCGGGACGAAGT-GA 99
                       ***** * ********** ** ******* ******** ****** * ********* **

consensus_11056#0      GCTTTCTAGACGACGGAACTGGATTGGTTCTGCTCGTAATCAGGTTGCTGCAGTCAGGAG 420
consensus_11056#1      GCTTTTTAGCCGACG-AACCGGAT-GGTTCTGGTGGTAATCAGGTTGGTGCAGTCAGGAG 157
                       ***** *** ***** *** **** ******* * ************ ************

consensus_11056#0      ATCTGTTGAAAAGGGGAAGAGTAATTCAACTTTCTCGGCGCACCAAGACATGGGCACAAG 480
consensus_11056#1      ATCTGGT-AAAAGGGGAAGAGTAATTCACCTTTCTGGGCGCACCAAGACATGGGCACAAG 216
                       ***** * ******************** ****** ************************

consensus_11056#0      CAGAAGTAACCACTACACTGCACAAGACAATGATGACTTCATTGCTTCAGAATCAGATAG 540
consensus_11056#1      CAGAAGTAACCACTACACTGCACAAGACAATGATGACTTCATTGCTTCAGAATCAGATAG 276
                       ************************************************************

consensus_11056#0      ACAGCTTCTACTTATGAGGCAGCAGGATGAGGAACTTGATGAGCTTAGCGAAAGTGTTCA 600
consensus_11056#1      ACAGCTTCTACTTATGAGGCAGCAGGATGAGGAACTTGATGAGCTTAGCGAAAGTGTTCA 336
                       ************************************************************

consensus_11056#0      AAGGATTGGTGGTGTAGGGCTAACCATACACGAAGAGCTGTCTGGACAGGAAAGGATCTT 660
consensus_11056#1      AAGGATTGGTGGTGTAGGGCTAACCATACACGAAGAGCTGTCTGGACAGGAAAGGATCTT 396
                       ************************************************************

consensus_11056#0      AAACGACCTAAGCTTGGAGATGGAAACTACTTCAAACAGACTTGACTTCGTGCAGAAAAG 720
consensus_11056#1      AAACGACCTAAGCTTGGAGATGGAAACTACTTCAAACAGACTTGACTTCGTTCAGAAAAG 456
                       *************************************************** ********

consensus_11056#0      AGTGGCGATGGTCATGAAAAAGGCTGGCATAAAAGGGCAGATTATGCTGATCCTCTTCCT 780
consensus_11056#1      AGTGGCGATGGTCATGAAAAAGGCTGGCATAAAAGGGCAGATTATGCTGATCCTCTTCCT 516
                       ************************************************************

consensus_11056#0      TGTGGTTCTGTTCATTATACTTTTCGTGTTGGTGTTCTTGACATAACGCACTAGTGTTCC 840
consensus_11056#1      TGTGGTTCTGTTCATTATACTTTTCGTGTTGGTGTTCTTGACATAACGCACTAGTGTTCC 576
                       ************************************************************

consensus_11056#0      AAGCCTCGTGTTTTGCGGCTGTACCTACCTACTGTAAGCTGTGGAGAACAGAAAACAAAT 900
consensus_11056#1      AAGCCTCGTGTTTTGCGGCTGTACCTACCTACTGTAAGCTGTGGAGAACAGAAAACAAAT 636
                       ************************************************************

consensus_11056#0      ACACGAGTTGCTCATATCTTTCAAATCCTACCTGATTATTGCTCCATCGTTAAAAAAAAA 960
consensus_11056#1      ACCCGAGTTGCTCATATCTTTCAAATCCT---------------------CAAAAAAAAA 675
                       ** **************************                      *********

consensus_11056#0      AAAAAAAA 968
consensus_11056#1      AAAAAA-- 681
                       ******  




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)