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Oryza sativa
cluster # 11059 cluster # 11059       Sequences # 8       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_11059#0 length = 1876 sequences # 5  
consensus_11059#1 length = 1141 sequences # 2  
consensus_11059#2 length = 818 sequences # 1  

consensusID : consensus_11059#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 1876
fasta sequence
                              [AACCATCTGCTCGGTCGCGGAGTTCACATCCCTCGCCCCGCCGCGGCGAATCGTGGAGGAACGACGACGATGGAGGCGGCGGCCATCTCGAATCCGCCGAGCAAGAGGTTCGCGCTACTTCGCTCGACCACCCGCCCGCCTTCCACTGCCAGCTGAAGGTACTGGAGCTTTCCGGTTTCCGCCGCTAAACTGTGCGTTCGTGGCACTGTGGCCTTAGTATCATCAGGATCGCGCTGGTTACCGGGGGCAACAAAGGGGTCGGGCTGGAGACCTGCAGGCAGCTCGCGTCCCGGGGGCTCAGGGTCGTCCTGACGGCGAGGAACGAGGCGAGGGGGCTGGAGGCGGTCGACGGCATCAGGCGCTCCGGCGCCGCCGATTCTGATGTCGTGTTCCACCAGTTGGATGTCACCGACGCTGCCAGCGTCGCCCGGCTGGCCGATTTCGTCCGGGATCAGTTCGGGAGGCTTGATATCTTGGTATGGGCTTCCCTTCGTGATTTTGGCTCTTCGATGCTTTAGGGCCTCCGAAATTCGTGAAATTGGAGTTCATACTGTTCCACTCAGTGCCATACTTCGTTAGGGAGAGCTTTACATTATGTTCAAACTTTCAGACATGAACTGAATTTGGTAAACTAAGTATAAAATGTGTTTTTTAAAAGTAAAACTGAGTATAAAAGGTTAACACAAAACTTTAGTTATTTGCTTGATGCAGTACTAAATTGAATCATTTCCTTATACTGGATAAGTGCATATGATTAACGATTCTATATTATAAGAACATGAATGTTAATACTAGTACATGATTCAATGTTAAGGGACATGGCAGCCATGGGCTTATTTTATTGTGCTTGTAATTCATAGAAGTTAACATTAGCTGATGTTTTCACAGCTCTTGAAAACTTCACCCGTTGTTGATACACTAGTAAACTAAGCTGTATGGAGTCACAGTTCTGGTAAACAAAAAGTATCATATACTCCATAATTGTGTGTTTCATATAGTTTGTAGATCATTCTCTCTGCATGTATGCTACCATAATTGTGTGTTTCATACTGTTTGTAGATCAATAACGCAGGAATTTCAGGTGTTGATCGGGATCCAGTTTTGGTTGCCAAAGTTAAAGATCAGATTGAAGGCATGGATGTAGATCAGAGAGTTGAATGGATGAGAGAAAATTCAAAGGAGACCTATGATGAAGCTAAATCATGCATTACAACAAACTACTATGGTGCCAAGCTTGTCACAGAAGCACTACTTCCTCTTCTTCTGTTATCCTCCTCGGGAAGAATTGTTAACGTGTCATCAGGATTTGGACTACTGAGAAACTTCAACAGTGAAGATCTTAGAAAAGAATTCGATGACATCGACAGTCTTACTGAAAAGAGACTAGAGGAGCTGTTGGATTTGTTCCTAGACGATTTCAAGGTGAACTTAATAGAAGCACATGGTTGGCCAACCGGTGGATCTTCCGCCTACAAAGTTGCCAAAGCTGCCCTTAATGCATACACAA-GGATTCTTGCCAAGAAGTACCCTACACTACGTATCAACTGTTTGACACCTGGTTATGTCAAGACTGACATCTCAATGCACATGGGAGTATTGACACCTGAAGAGGGTGCT-AGTAACTCCGTAAAGGTAGCTCTCTTGCCT-GAT-GATGGTCCAACAGGTGCTTATTTTGATCGGAATGGCGAGGCATCTTTTGTGTGATCATAGTTTCTGCTTTCTTTAACCTATAGTTTCAGAATAAGAGATTGTCAAAGTAGTTGTGCCCAACAGACAATGTAGTTTTGACTTGTGTACTCAAACTGATGTATTGAAGTTGAAATAGTAGAGCTTTACATCGATATCATGATTTTATCTATTTTCTCAAAAAAAAAAA]

[+] EMBL AK119481             [AACCATCTGCTCGGTCGCGGAGTTCACATCCCTCGCCCCGCCGCGGCGAATCGTGGAGGAACGACGACGATGGAGGCGGCGGCCATCTCGAATCCGCCGAGCAAGAGGTTCGCGCTACTTCGCTCGACCACCCGCCCGCCTTCCACTGCCAGCTGAAGGTACTGGAGCTTTCCGGTTTCCGCCGCTAAACTGTGCGTTCGTGGCACTGTGGCCTTAGTATCATCAGGATCGCGCTGGTTACCGGGGGCAACAAAGGGGTCGGGCTGGAGACCTGCAGGCAGCTCGCGTCCCGGGGGCTCAGGGTCGTCCTGACGGCGAGGAACGAGGCGAGGGGGCTGGAGGCGGTCGACGGCATCAGGCGCTCCGGCGCCGCCGATTCTGATGTCGTGTTCCACCAGTTGGATGTCACCGACGCTGCCAGCGTCGCCCGGCTGGCCGATTTCGTCCGGGATCAGTTCGGGAGGCTTGATATCTTGGTATGGGCTTCCCTTCGTGATTTTGGCTCTTCGATGCTTTAGGGCCTCCGAAATTCGTGAAATTGGAGTTCATACTGTTCCACTCAGTGCCATACTTCGTTAGGGAGAGCTTTACATTATGTTCAAACTTTCAGACATGAACTGAATTTGGTAAACTAAGTATAAAATGTGTTTTTTAAAAGTAAAACTGAGTATAAAAGGTTAACACAAAACTTTAGTTATTTGCTTGATGCAGTACTAAATTGAATCATTTCCTTATACTGGATAAGTGCATATGATTAACGATTCTATATTATAAGAACATGAATGTTAATACTAGTACATGATTCAATGTTAAGGGACATGGCAGCCATGGGCTTATTTTATTGTGCTTGTAATTCATAGAAGTTAACATTAGCTGATGTTTTCACAGCTCTTGAAAACTTCACCCGTTGTTGATACACTAGTAAACTAAGCTGTATGGAGTCACAGTTCTGGTAAACAAAAAGTATCATATACTCCATAATTGTGTGTTTCATATAGTTTGTAGATCATTCTCTCTGCATGTATGCTACCATAATTGTGTGTTTCATACTGTTTGTAGATCAATAACGCAGGAATTTCAGGTGTTGATCGGGATCCAGTTTTGGTTGCCAAAGTTAAAGATCAGATTGAAGGCATGGATGTAGATCAGAGAGTTGAATGGATGAGAGAAAATTCAAAGGAGACCTATGATGAAGCTAAATCATGCATTACAACAAACTACTATGGTGCCAAGCTTGTCACAGAAGCACTACTTCCTCTTCTTCTGTTATCCTCCTCGGGAAGAATTGTTAACGTGTCATCAGGATTTGGACTACTGAGAAACTTCAACAGTGAAGATCTTAGAAAAGAATTCGATGACATCGACAGTCTTACTGAAAAGAGACTAGAGGAGCTGTTGGATTTGTTCCTAGACGATTTCAAGGTGAACTTAATAGAAGCACATGGTTGGCCAACCGGTGGATCTTCCGCCTACAAAGTTGCCAAAGCTGCCCTTAATGCATACACAA GGATTCTTGCCAAGAAGTACCCTACACTACGTATCAACTGTTTGACACCTGGTTATGTCAAGACTGACATCTCAATGCACATGGGAGTATTGACACCTGAAGAGGGTGCT AGTAACTCCGTAAAGGTAGCTCTCTTGCCT GAT GATGGTCCAACAGGTGCTTATTTTGATCGGAATGGCGAGGCATCTTTTGTGTGATCATAGTTTCTGCTTTCTTTAACCTATAGTTTCAGAATAAGAGATTGTCAAAGTAGTTGTGCCCAACAGACAATGTAGTTTTGACTTGTGTACTCAAACTGATGTATTGAAGTTGAAATAGTAGAGCTTTACATCGATATCAT                             ]
[-] EMBL CB649522             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             CAGGAATTTCAGGTGTTGATCGGGATCCAGTTTTGGTTGCCAAAGTTAAAGATCAGATTGAAGGCATGGATGTAGATCAGAGAGTTGAATGGATGAGAGAAAATTCAAAGGAGACCTATGATGAAGCTAAATCATGCATTACAACAAACTACTATGGTGCCAAGCTTGTCACAGAAGCACTACTTCCTCTTCTTCTGTTATCCTCCTCGGGAAGAATTGTTAACGTGTCATCAGGATTTGGACTACTGAGAAACTTCAACAGTGAAGATCTTAGAAAAGAATTCGATGACATCGACAGTCTTACTGAAAAGAGACTAGAGGAGCTGTTGGATTTGTTCCTAGACGATTTCAAGGTGAACTTAATAGAAGCACATGGTTGGCCAACCGGTGGATCTTCCGCCTACAAAGTTGCCAAAGCTGCCCTTAATGCATACACAA GGATTCTTGCCAAGAAGTACCCTACACTACGTATCAACTGTTTGACACCTGGTTATGTCAAGACTGACATCTCAATGCACATGGGAGTATTGACACCTGAAGAGGGTGCT AGTAACTCCGTAAAGGTAGCTCTCTTGCCT GAT GATGGTCCAACAGGTGCTTATTTTGATCGGAATGGCGAGGCATCTTTTGTGTGATCATAGTTTCTGCTTTCTTTAACCTATAGTTTCAGAATAAGAGATTGTCAAAGTAGTTGTGCCCAACAGACAATGTAGTTTTGACTTGTGTACTCAAACTGATGTATTGAAGTTGAAATAGTAGAGCTTTACATCGATATCATG                            ]
[+] EMBL AU057967             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   AGATTGAAGGCATGGATGTAGATCAGAGAGTTGAATGGATGAGAGAAAATTCAAAGGAGACCTATGATGAAGCTAAATCATGCATTACAACAAACTACTATGGTGCCAAGCTTGTCACAGAAGCACTACTTCCTCTTCTTCTGTTATCCTCCTCGGGAAGAATTGTTAACGTGTCATCAGGATTTGGACTACTGAGAAACTTCAACAGTGAAGATCTTAGAAAAGAATTCGATGACATCGACAGTCTTACTGAAAAGAGACTAGAGGAGCTGTTGGATTTGTTCCTAGACGATTTCAAGGTGAACTTAATAGAAGCACATGGTTGGCCAACCGGTGGATCTTCCGCCTACAAAGTTGCCAAAGCTGCCCTTAATGCATACACAAGGGATTCTTGCCAAGAAGTACCCTACACTACGTATCAACTGTTTGACACCTGGTTATGTCAAGACTGACATCTCAATGCACATGGGAGTATTGACACCTGAAGAGGGTGCTAAGTAACTCCGTAAAGGTAGCTCTCTTGCCTGGATGGATGGTCCAACAGGTGCTTATTTTGATCGGAATGGCGAGGCATCTTTTGTGTGATCATAGTTTCTGCTTTCTTTAACCTATAGTTTCAGAATAAGAGATTGTCAAAGTAGTTGTGCCCAACAGACAATGTAGTTTTGACTTGTGTAC                                                                               ]
[-] EMBL CA762146             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ACCTATGATGAAGCTAAATCATGCATTACAACAAACTACTATGGTGCCAAGCTTGTCACAGAAGCACTACTTCCTCTTCTTCTGTTATCCTCCTCGGGAAGAATTGTTAACGTGTCATCAGGATTTGGACTACTGAGAAACTTCAACAGTGAAGATCTTAGAAAAGAATTCGATGACATCGACAGTCTTACTGAAAAGAGACTAGAGGAGCTGTTGGATTTGTTCCTAGACGATTTCAAGGTGAACTTAATAGAAGCACATGGTTGGCCAACCGGTGGATCTTCCGCCTACAAAGTTGCCAAAGCTGCCCTTAATGCATACACAA GGATTCTTGCCAAGAAGTACCCTACACTACGTATCAACTGTTTGACACCTGGTTATGTCAAGACTGACATCTCAATGCACATGGGAGTATTGACACCTGAAGAGGGTGCT AGTAACTCCGTAAAGGTAGCTCTCTTGCCT GAT GATGGTCCAACAGGTGCTTATTTTGATCGGAATGGCGAGGCATCTTTTGTGTGATCATAGTTTCTGCTTTCTTTAACCTATAGTTTCAGAATAAGAGATTGTCAAAGTAGTTGTGCCCAACAGACAATGTAGTTTTGACTTGTGTACTCAAACTGATGTATTGAAGTTGAAATAGTAGAGCTTTACATCGATATCATGATTTTATCTATTTTCTCAAAAAAAAAAA]
[+] EMBL BI805098             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ACATCGACAGTCTTACTGAAAAGAGACTAGAGGA CTGTTGGATTTGTTCCTAGACGATTTCAAGGTGAACTTAATAGAAGCACATGGTT GCCAACCGGTGGATCTTCCGCCTACAAAGTTGCCAAAGCTGCCCTTAATGCATACACAA GGATTCTTGCCAAGAAGTACCCTACACTACGTATCAACTGTTTGACACCTGGTTATGTCAAGACTGACATCTCAATGCACATGGGAGTATTGACACCTGAAGAGGGTGCT AGTAACTCCGTAAAGGTAGCTCTCTTGCCT GAT GATGGTCCCACAGGTGCTTATTTTGATCGGAATGGCGAGGCATCTTTTGTGTGATCATAGTTTCTGCTTTCTTTAACCTATAGTTTCAGAATAAGAGATTGTC AAGTAGTTGTGCCC ACAGAC ATGTAGTTTTGACTTGTGTACTC AACTGATGTATTGAAGTTGAAATAGTAGAGCTTTACATCGATATCATGATTTTATCTATTTTCTCTGGAAAAAA  ]


>consensus_11059#0 AACCATCTGCTCGGTCGCGGAGTTCACATCCCTCGCCCCGCCGCGGCGAATCGTGGAGGA ACGACGACGATGGAGGCGGCGGCCATCTCGAATCCGCCGAGCAAGAGGTTCGCGCTACTT CGCTCGACCACCCGCCCGCCTTCCACTGCCAGCTGAAGGTACTGGAGCTTTCCGGTTTCC GCCGCTAAACTGTGCGTTCGTGGCACTGTGGCCTTAGTATCATCAGGATCGCGCTGGTTA CCGGGGGCAACAAAGGGGTCGGGCTGGAGACCTGCAGGCAGCTCGCGTCCCGGGGGCTCA GGGTCGTCCTGACGGCGAGGAACGAGGCGAGGGGGCTGGAGGCGGTCGACGGCATCAGGC GCTCCGGCGCCGCCGATTCTGATGTCGTGTTCCACCAGTTGGATGTCACCGACGCTGCCA GCGTCGCCCGGCTGGCCGATTTCGTCCGGGATCAGTTCGGGAGGCTTGATATCTTGGTAT GGGCTTCCCTTCGTGATTTTGGCTCTTCGATGCTTTAGGGCCTCCGAAATTCGTGAAATT GGAGTTCATACTGTTCCACTCAGTGCCATACTTCGTTAGGGAGAGCTTTACATTATGTTC AAACTTTCAGACATGAACTGAATTTGGTAAACTAAGTATAAAATGTGTTTTTTAAAAGTA AAACTGAGTATAAAAGGTTAACACAAAACTTTAGTTATTTGCTTGATGCAGTACTAAATT GAATCATTTCCTTATACTGGATAAGTGCATATGATTAACGATTCTATATTATAAGAACAT GAATGTTAATACTAGTACATGATTCAATGTTAAGGGACATGGCAGCCATGGGCTTATTTT ATTGTGCTTGTAATTCATAGAAGTTAACATTAGCTGATGTTTTCACAGCTCTTGAAAACT TCACCCGTTGTTGATACACTAGTAAACTAAGCTGTATGGAGTCACAGTTCTGGTAAACAA AAAGTATCATATACTCCATAATTGTGTGTTTCATATAGTTTGTAGATCATTCTCTCTGCA TGTATGCTACCATAATTGTGTGTTTCATACTGTTTGTAGATCAATAACGCAGGAATTTCA GGTGTTGATCGGGATCCAGTTTTGGTTGCCAAAGTTAAAGATCAGATTGAAGGCATGGAT GTAGATCAGAGAGTTGAATGGATGAGAGAAAATTCAAAGGAGACCTATGATGAAGCTAAA TCATGCATTACAACAAACTACTATGGTGCCAAGCTTGTCACAGAAGCACTACTTCCTCTT CTTCTGTTATCCTCCTCGGGAAGAATTGTTAACGTGTCATCAGGATTTGGACTACTGAGA AACTTCAACAGTGAAGATCTTAGAAAAGAATTCGATGACATCGACAGTCTTACTGAAAAG AGACTAGAGGAGCTGTTGGATTTGTTCCTAGACGATTTCAAGGTGAACTTAATAGAAGCA CATGGTTGGCCAACCGGTGGATCTTCCGCCTACAAAGTTGCCAAAGCTGCCCTTAATGCA TACACAAGGATTCTTGCCAAGAAGTACCCTACACTACGTATCAACTGTTTGACACCTGGT TATGTCAAGACTGACATCTCAATGCACATGGGAGTATTGACACCTGAAGAGGGTGCTAGT AACTCCGTAAAGGTAGCTCTCTTGCCTGATGATGGTCCAACAGGTGCTTATTTTGATCGG AATGGCGAGGCATCTTTTGTGTGATCATAGTTTCTGCTTTCTTTAACCTATAGTTTCAGA ATAAGAGATTGTCAAAGTAGTTGTGCCCAACAGACAATGTAGTTTTGACTTGTGTACTCA AACTGATGTATTGAAGTTGAAATAGTAGAGCTTTACATCGATATCATGATTTTATCTATT TTCTCAAAAAAAAAAA



consensusID : consensus_11059#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1141
fasta sequence
                              [AGTTGAATGGATGAGAGAAAATTCAAAGGAGACCTATGATGAAGCTAAATCATGCATTACAACAAACTACTATGGTGCCAAGCTTGTCACAGAAGCACTACTTCCTCTTCTTCTGTTATCCTCCTCGGGAAGAATTGTTAACGTGTCATCAGGATTTGGACTACTGAGAGTAAGTTATAAACTCTGCTGCAGTTACACTGGACAAGTAACTAACTAGTTGTCTTCAGTATTAAGTTATACAAATATATTTCTACAGAAGCATGATTAACTATGCCTCCTATTTTTTGATTCCCTAGAAAGCTAAATTGTCTAGGGGCCTTGTTCATATAAACTTGTAGGACAACTCTTCTCTTCCCTGCGAGCTTTTGCGAAAGGCATTTCTATGATCTTCATGCAGTGTAACACGTTTCTTTGTATGCAGCTGCCTTTTTTTTTTCCTTATGTGCAGGATATATACCATCGTCAAAAACTTATGTTCATTAAAATAGTGACTAGGAATTACATTTACAGGGGATTAAATGAAATGAGGAAGTTCTTATCCTGCCCTCCCATGTTTCTTGCATATCTGCACTGATAATTCTCACTGAATCATATCATTTTTCTTGAGCAGAACTTCAACAGTGAAGATCTTAGAAAAGAATTCGATGACATCGACAGTCTTACTGAAAAGAGACTAGAGGAGCTGTTGGATTTGTTCCTAGACGATTTCAAGGTGAACTTAATAGAAGCACATGGTTGGCCAACCGGTGGATCTTCCGCCTACAAAGTTGCCAAAGCTGCCCTTAATGCATACACAAGGATTCTTGCCAAGAAGTACCCTACACTACGTATCAACTGTTTGACACCTGGTTATGTCAAGACTGACATCTCAATGCACATGGGAGTATTGACACCTGAAGAGGGTGCTAGTAACTCCGTAAAGGTAGCTCTCTTGCCTGATGATGGTCCAACAGGTGCTTATTTTGATTGGAATGGCGAGGCATCTTTTGTGTGATCATAGTTTCTGCTTTCTTTACCCTATAGTTTCAGAATAAGAGATTGTCAAAGTAGTTGTGCCCAACAGACAATGTAGTTTTGACTTGTGTACTCAAACCTGAAGGATTGAAGTTGAAATAGTAGAGCTTTCCATCGAAAAAAAAGA]

[+] EMBL CB661743             [AGTTGAATGGATGAGAGAAAATTCAAAGGAGACCTATGATGAAGCTAAATCATGCATTACAACAAACTACTATGGTGCCAAGCTTGTCACAGAAGCACTACTTCCTCTTCTTCTGTTATCCTCCTCGGGAAGAATTGTTAACGTGTCATCAGGATTTGGACTACTGAGAGTAAGTTATAAACTCTGCTGCAGTTACACTGGACAAGTAACTAACTAGTTGTCTTCAGTATTAAGTTATACAAATATATTTCTACAGAAGCATGATTAACTATGCCTCCTATTTTTTGATTCCCTAGAAAGCTAAATTGTCTAGGGGCCTTGTTCATATAAACTTGTAGGACAACTCTTCTCTTCCCTGCGAGCTTTTGCGAAAGGCATTTCTATGATCTTCATGCAGTGTAACACGTTTCTTTGTATGCAGCTGCCTTTTTTTTTTCCTTATGTGCAGGATATATACCATCGTCAAAAACTTATGTTCATTAAAATAGTGACTAGGAATTACATTTACAGGGGATTAAATGAAATGAGGAAGTTCTTATCCTGCCCTCCCATGTTTCTTGCATATCTGCACTGATAATTCTCACTGAATCATATCATTTTTCTTGAGCAGAACTTCAACAGTGAAGATCTTAGAAAAGAATTCGATGACATCGACAGTCTTACTGAAAAGAGACTAGAGGAGCTGTTGGATTTGTTCCTAGACGATTTCAAGGTGAACTTAATAGAAGCACATGGTTGGCCAACCGGTGGATCTTCCGCCTACAAAGTTGCCAAAGCTGCCCTTAATGCATACACAAGGATTCTTGCCAAGAAGTA                                                                                                                                                                                                                                                                                                                                     ]
[-] EMBL CB661744             [                                                                                                                                                                                                                                                                                                                                                                                                                                                              AGGATATATACCATCGTCAAAAACTTATGTTCATTAAAATAGTGACTAGGAATTACATTTACAGGGGATTAAATGAAATGAGGAAGTTCTTATCCTGCCCTCCCATGTTTCTTGCATATATGCACTGATAATTCTCGCTGAATCATATCATTTTTCTTGAGCAGAACTTCACCAGTGAAGATCTTAGAAAAGAATTCGATGACATCGACAGTCTTACTGAAAAGAGACTAGAGGAGCTGTTGGATTTGTTCCTAGACGATTTCAAGGTGAACTTAATAGAAGCACATGGTTGGCCAACCGGTGGATTTTCCGCCTACAAAGTTGCCAAAGCTGCCCTTAATGCATACACAAGGATTTTTGCCAAGAAGTCCCCTACACTACGTATCAACTGTTTGACACCTGGTTATGTCAAGACTGACATCTCAATGCACATGGGAGTATTGACACCTGAAGAGGGTGCTAGTAACTCCGTAAAGGTAGCTCTCTTGCCTGATGATGGTCCAACAGGTGCTTATTTTGATTGGAATGGCGAGGCATCTTTTGTGTGATCATAGTTTCTGCTTTCTTTACCCTATAGTTTCAGAATAAGAGATTGTCAAAGTAGTTGTGCCCAACAGACAATGTAGTTTTGACTTGTGTACTCAAACCTGAAGGATTGAAGTTGAAATAGTAGAGCTTTCCATCGAAAAAAAAGA]


>consensus_11059#1 AGTTGAATGGATGAGAGAAAATTCAAAGGAGACCTATGATGAAGCTAAATCATGCATTAC AACAAACTACTATGGTGCCAAGCTTGTCACAGAAGCACTACTTCCTCTTCTTCTGTTATC CTCCTCGGGAAGAATTGTTAACGTGTCATCAGGATTTGGACTACTGAGAGTAAGTTATAA ACTCTGCTGCAGTTACACTGGACAAGTAACTAACTAGTTGTCTTCAGTATTAAGTTATAC AAATATATTTCTACAGAAGCATGATTAACTATGCCTCCTATTTTTTGATTCCCTAGAAAG CTAAATTGTCTAGGGGCCTTGTTCATATAAACTTGTAGGACAACTCTTCTCTTCCCTGCG AGCTTTTGCGAAAGGCATTTCTATGATCTTCATGCAGTGTAACACGTTTCTTTGTATGCA GCTGCCTTTTTTTTTTCCTTATGTGCAGGATATATACCATCGTCAAAAACTTATGTTCAT TAAAATAGTGACTAGGAATTACATTTACAGGGGATTAAATGAAATGAGGAAGTTCTTATC CTGCCCTCCCATGTTTCTTGCATATCTGCACTGATAATTCTCACTGAATCATATCATTTT TCTTGAGCAGAACTTCAACAGTGAAGATCTTAGAAAAGAATTCGATGACATCGACAGTCT TACTGAAAAGAGACTAGAGGAGCTGTTGGATTTGTTCCTAGACGATTTCAAGGTGAACTT AATAGAAGCACATGGTTGGCCAACCGGTGGATCTTCCGCCTACAAAGTTGCCAAAGCTGC CCTTAATGCATACACAAGGATTCTTGCCAAGAAGTACCCTACACTACGTATCAACTGTTT GACACCTGGTTATGTCAAGACTGACATCTCAATGCACATGGGAGTATTGACACCTGAAGA GGGTGCTAGTAACTCCGTAAAGGTAGCTCTCTTGCCTGATGATGGTCCAACAGGTGCTTA TTTTGATTGGAATGGCGAGGCATCTTTTGTGTGATCATAGTTTCTGCTTTCTTTACCCTA TAGTTTCAGAATAAGAGATTGTCAAAGTAGTTGTGCCCAACAGACAATGTAGTTTTGACT TGTGTACTCAAACCTGAAGGATTGAAGTTGAAATAGTAGAGCTTTCCATCGAAAAAAAAG A



consensusID : consensus_11059#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 818
fasta sequence
                              [AACTCCGAAGGTCTAAAGGTGTCAGAAAAGTTACCACAGGGATAACTGGCTTGTGGCAGCCAAGCGTTCATAGCGACGTTGCTTTTTGATCCTTCGATGTCGGCTCTTCCTATCATTGTGAAGCAGAATTCACCAAGTGTTGGATTGTTCACCCACCAATAGGGAACGAGGCGAGGGGGCTGGAGGCGGTCGACGGCATCAGGCGCTCCGGCGCCGCCGATTCTGATGTCGTGTTCCACCAGTTGGATGTCACCGACGCTGCCAGCGTCGCCCGGCTGGCCGATTTCGTCCGGGATCAGTTCGGGAGGCTTGATATCTTGATCAATAACGCAGGAATTTCAGGTGTTGATCGGGATCCAGTTTTGGTTGCCAAAGTTAAAGATCAGATTGAAGGCATGGATGTAGATCAGAGAGTTGAATGGATGAGAGAAAATTCAAAGGAGACCTATGATGAAGCTAAATCATGCATTACAACAAACTACTATGGTGCCAAGCTTGTCACAGAAGCACTACTTCCTCTTCTTCTGTTATCCTCCTCGGGAAGAATTGTTAACGTGTCATCAGGATTTGGACTACTGAGAAACTTCAACAGTGAAGATCTTAGAAAAGAATTCGATGACATCGACAGTCTTACTGAAAAGAGACTAGAGGAGCTGTTGGATTTGTTCCTAGACGATTTCAAGGTGAACTTAATAGAAGCACATGGTTGGCCAACCGGTGGATCTTCCGCCTACAAAGTTGCCAAAGCTGCCCTTAATGCATACACAAGGATTCTTGCNCAGAAGTACCCTACACTACGTATCAACTGTTTGACACCT]

[+] EMBL CB649521             [AACTCCGAAGGTCTAAAGGTGTCAGAAAAGTTACCACAGGGATAACTGGCTTGTGGCAGCCAAGCGTTCATAGCGACGTTGCTTTTTGATCCTTCGATGTCGGCTCTTCCTATCATTGTGAAGCAGAATTCACCAAGTGTTGGATTGTTCACCCACCAATAGGGAACGAGGCGAGGGGGCTGGAGGCGGTCGACGGCATCAGGCGCTCCGGCGCCGCCGATTCTGATGTCGTGTTCCACCAGTTGGATGTCACCGACGCTGCCAGCGTCGCCCGGCTGGCCGATTTCGTCCGGGATCAGTTCGGGAGGCTTGATATCTTGATCAATAACGCAGGAATTTCAGGTGTTGATCGGGATCCAGTTTTGGTTGCCAAAGTTAAAGATCAGATTGAAGGCATGGATGTAGATCAGAGAGTTGAATGGATGAGAGAAAATTCAAAGGAGACCTATGATGAAGCTAAATCATGCATTACAACAAACTACTATGGTGCCAAGCTTGTCACAGAAGCACTACTTCCTCTTCTTCTGTTATCCTCCTCGGGAAGAATTGTTAACGTGTCATCAGGATTTGGACTACTGAGAAACTTCAACAGTGAAGATCTTAGAAAAGAATTCGATGACATCGACAGTCTTACTGAAAAGAGACTAGAGGAGCTGTTGGATTTGTTCCTAGACGATTTCAAGGTGAACTTAATAGAAGCACATGGTTGGCCAACCGGTGGATCTTCCGCCTACAAAGTTGCCAAAGCTGCCCTTAATGCATACACAAGGATTCTTGCNCAGAAGTACCCTACACTACGTATCAACTGTTTGACACCT]


>consensus_11059#2 AACTCCGAAGGTCTAAAGGTGTCAGAAAAGTTACCACAGGGATAACTGGCTTGTGGCAGC CAAGCGTTCATAGCGACGTTGCTTTTTGATCCTTCGATGTCGGCTCTTCCTATCATTGTG AAGCAGAATTCACCAAGTGTTGGATTGTTCACCCACCAATAGGGAACGAGGCGAGGGGGC TGGAGGCGGTCGACGGCATCAGGCGCTCCGGCGCCGCCGATTCTGATGTCGTGTTCCACC AGTTGGATGTCACCGACGCTGCCAGCGTCGCCCGGCTGGCCGATTTCGTCCGGGATCAGT TCGGGAGGCTTGATATCTTGATCAATAACGCAGGAATTTCAGGTGTTGATCGGGATCCAG TTTTGGTTGCCAAAGTTAAAGATCAGATTGAAGGCATGGATGTAGATCAGAGAGTTGAAT GGATGAGAGAAAATTCAAAGGAGACCTATGATGAAGCTAAATCATGCATTACAACAAACT ACTATGGTGCCAAGCTTGTCACAGAAGCACTACTTCCTCTTCTTCTGTTATCCTCCTCGG GAAGAATTGTTAACGTGTCATCAGGATTTGGACTACTGAGAAACTTCAACAGTGAAGATC TTAGAAAAGAATTCGATGACATCGACAGTCTTACTGAAAAGAGACTAGAGGAGCTGTTGG ATTTGTTCCTAGACGATTTCAAGGTGAACTTAATAGAAGCACATGGTTGGCCAACCGGTG GATCTTCCGCCTACAAAGTTGCCAAAGCTGCCCTTAATGCATACACAAGGATTCTTGCNC AGAAGTACCCTACACTACGTATCAACTGTTTGACACCT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_11059#0      AACCATCTGCTCGGTCGCGGAGTTCACATCCCTCGCCCCGCCGCGGCGAATCGTGGAGGA 60
consensus_11059#2      ------------------------------------------------------------
consensus_11059#1      ------------------------------------------------------------
                                                                                   

consensus_11059#0      ACGACGACGATGGAGGCGGCGGCCATCTCGAATCCGCCGAGCAAGAGGTTCGCGCTACTT 120
consensus_11059#2      ------------------------------------------------------------
consensus_11059#1      ------------------------------------------------------------
                                                                                   

consensus_11059#0      CGCTCGACCACCCGCCCGCCTTCCACTGCCAGCTGAAGGTACTGGAGCTTTCCGGTTTCC 180
consensus_11059#2      ------------------------------------------------------------
consensus_11059#1      ------------------------------------------------------------
                                                                                   

consensus_11059#0      GCCGCTAAACTGTGCGTTCGTGGCACTGTGGCCTTAGTATCATCAGGATCGCGCTGGTTA 240
consensus_11059#2      ------------------------------------------------------------
consensus_11059#1      ------------------------------------------------------------
                                                                                   

consensus_11059#0      CCGGGGGCAACAAAGGGGTCGGGCTGGAGACCTGCAGGCAGCTCGCGTCCCGGGGGCTCA 300
consensus_11059#2      ------------------------------------------------------------
consensus_11059#1      ------------------------------------------------------------
                                                                                   

consensus_11059#0      GGGTCGTCCTGACGGCGAGGAACGAGGCGAGGGGGCTGGAGGCGGTCGACGGCATCAGGC 360
consensus_11059#2      ------------------------------------------------------------
consensus_11059#1      ------------------------------------------------------------
                                                                                   

consensus_11059#0      GCTCCGGCGCCGCCGATTCTGATGTCGTGTTCCACCAGTTGGATGTCACCGACGCTGCCA 420
consensus_11059#2      ------------------------------------------------------------
consensus_11059#1      ------------------------------------------------------------
                                                                                   

consensus_11059#0      GCGTCGCCCGGCTGGCCGATTTCGTCCGGGATCAGTTCGGGAGGCTTGATATCTTGGTAT 480
consensus_11059#2      ------------------------------------------------------------
consensus_11059#1      ------------------------------------------------------------
                                                                                   

consensus_11059#0      GGGCTTCCCTTCGTGATTTTGGCTCTTCGATGCTTTAGGGCCTCCGAAATTCGTGAAATT 540
consensus_11059#2      ------------------------------------------------------------
consensus_11059#1      ------------------------------------------------------------
                                                                                   

consensus_11059#0      GGAGTTCATACTGTTCCACTCAGTGCCATACTTCGTTAGGGAGAGCTTTACATTATGTTC 600
consensus_11059#2      ------------------------------------------------------------
consensus_11059#1      ------------------------------------------------------------
                                                                                   

consensus_11059#0      AAACTTTCAGACATGAACTGAATTTGGTAAACTAAGTATAAAATGTGTTTTTTAAAAGTA 660
consensus_11059#2      ------------------------------------------------------------
consensus_11059#1      ------------------------------------------------------------
                                                                                   

consensus_11059#0      AAACTGAGTATAAAAGGTTAACACAAAACTTTAGTTATTTGCTTGATGCAGTACTAAATT 720
consensus_11059#2      -------------------------------------------------------AACTC 5
consensus_11059#1      ------------------------------------AGTTGAATGGATGAGAGAAAATTC 24
                                                                              ** * 

consensus_11059#0      GAATC-ATTTCCTTATACTGGATAAGTG--CATATGATTAACGATTCTATATTATAAGAA 777
consensus_11059#2      CGAAG-GTCTAAAGGTGTCAGAAAAGTTACCACAGGGATAACTGGCTTGTGGCAGCCAAG 64
consensus_11059#1      AAAGGAGACCTATGATGAAGCTAAATCATGCATTACAACAAACTAC-TATGGTGCCAAGC 83
                         *            *       **     **       **      * *          

consensus_11059#0      CATGAATGTTAATACTAGTACATGATTCAATGTTAAGGGACATGGCAGCCATGGGCTTAT 837
consensus_11059#2      CGTTCATAGCGACGTTGCTTTTTGATCCTTCG---------ATGTCGGC----------T 105
consensus_11059#1      TTGTCACAGAAGCACTACTTCCTCTTCTTCTGTTA---TCCTCCTCGGGAA--GAATTGT 138
                            *         *  *   *  *     *             * *           *

consensus_11059#0      TTTATTGTGCTTGTAATTCATAGAAGTTAACATTAGCTGATGTTTTCACAGCTCTTGAAA 897
consensus_11059#2      CTTCCTATCATTGTGAAGC--AGAATTCACCAAGTGTTGGATTGTTCACCCACCAATAGG 163
consensus_11059#1      TAACGTGTCATCAGGATTT----GGACTACTGAGAG-TAAGTTATAAACTCTGCTGCAGT 193
                            * *  *    *            *      * *    * *  **    *   *  

consensus_11059#0      ACTTCACCCGTTGTTGATACACTAGTAAACTAAGCTGTATGGAGTCACAGTTCTGGTAAA 957
consensus_11059#2      GAACGAGGCGAGGGGGCTGGA--GGCGGTCGACGGCATCAGGCGCTCCGGCGCCGCCGAT 221
consensus_11059#1      TACACTGGACAAGTAACTA-ACTAGTTGTCTTCAGTATTAAGTTATACAAATATATTTCT 252
                                   *    *  *   *    *       *   *     *            

consensus_11059#0      CAAAAAGTATCATATACTCCATAATTGTGTGTTTCATATAGTTTGTAGATCATTCTCTCT 1017
consensus_11059#2      TCTGA--TGTCGTGTTCCAC-CAGTTGGATGTCACCGACGCTGCCAGCGTCGCCCGGCTG 278
consensus_11059#1      ACAGAAGCATGATTAACTATGCC-TCCTATTTTTTGATTCCCTAGAAAGCTAAATTGTCT 311
                           *    *  *   *       *    * *                            

consensus_11059#0      GCATGTATGCTACCATAATTGTGTGTTTCATACTGTTTGTAGATCAATAACGCAGGAATT 1077
consensus_11059#2      GCCGATTTCGTCCGGGATCAGTTCGGGAGGCTTGATATCTTGATCAATAACGCAGGAATT 338
consensus_11059#1      AGGGGCCTTGTTC-ATATAAACTTGTAGGACAACTCTTCTCTTCCC----TGCGAGCTTT 366
                              *  * *   *       *            * *    *      **  *  **

consensus_11059#0      TCAGGTGTTGATCGGGATCCAGTTTTGGTTGCCAAAGTTAAAGATCAGATTGAAGGCATG 1137
consensus_11059#2      TCAGGTGTTGATCGGGATCCAGTTTTGGTTGCCAAAGTTAAAGATCAGATTGAAGGCATG 398
consensus_11059#1      TGCGAAAGGCATTTCTAT--GATCTTCAT--GCAGTGTAACACGTTTCTTTGTATGCAGC 422
                       *  *      **    **    * **  *   **  ** * *  *    *** * ***  

consensus_11059#0      GATGTAGATCAGAGAGTTGAATGGATGAGAGAAAAT-TCAAAGGAGACCTATGATGAAGC 1196
consensus_11059#2      GATGTAGATCAGAGAGTTGAATGGATGAGAGAAAAT-TCAAAGGAGACCTATGATGAAGC 457
consensus_11059#1      TGCCTTTTTTTTTTCCTTATGTGCAGGATATATACCATCGTCAAAAACTTATGTTCAT-T 481
                           *   *       **   ** * ** * * *   **     * ** **** * *   

consensus_11059#0      TAAATCATGCATTACAACAA-ACTACTATGGTGCCAAGCTTGTCACAGAAGCACTACTTC 1255
consensus_11059#2      TAAATCATGCATTACAACAA-ACTACTATGGTGCCAAGCTTGTCACAGAAGCACTACTTC 516
consensus_11059#1      AAAATAGTGACTAGGAATTACATTTACAGGGGATTAAATGAAATGAGGAAGTTCTTATCC 541
                        ****  **  *   **  * * *   * **    **          ****  **  * *

consensus_11059#0      C-TCTTCTTCTGTTATCC-----TCCTCGGGAAGAATTGTTAACGTGTCATCAGGATTTG 1309
consensus_11059#2      C-TCTTCTTCTGTTATCC-----TCCTCGGGAAGAATTGTTAACGTGTCATCAGGATTTG 570
consensus_11059#1      TGCCCTCCCATGTTTCTTGCATATCTGCACTGATAATTCTCACTGAATCATATCATTTTT 601
                          * **   ****         **  *    * **** * *  *  ****     *** 

consensus_11059#0      GACTACTGAGAAACTTCAACAGTGAAGATCTTAGAAAAGAATTCGATGACATCGACAGTC 1369
consensus_11059#2      GACTACTGAGAAACTTCAACAGTGAAGATCTTAGAAAAGAATTCGATGACATCGACAGTC 630
consensus_11059#1      --CTTGAGCAGAACTTCAACAGTGAAGATCTTAGAAAAGAATTCGATGACATCGACAGTC 659
                         **   *   *************************************************

consensus_11059#0      TTACTGAAAAGAGACTAGAGGAGCTGTTGGATTTGTTCCTAGACGATTTCAAGGTGAACT 1429
consensus_11059#2      TTACTGAAAAGAGACTAGAGGAGCTGTTGGATTTGTTCCTAGACGATTTCAAGGTGAACT 690
consensus_11059#1      TTACTGAAAAGAGACTAGAGGAGCTGTTGGATTTGTTCCTAGACGATTTCAAGGTGAACT 719
                       ************************************************************

consensus_11059#0      TAATAGAAGCACATGGTTGGCCAACCGGTGGATCTTCCGCCTACAAAGTTGCCAAAGCTG 1489
consensus_11059#2      TAATAGAAGCACATGGTTGGCCAACCGGTGGATCTTCCGCCTACAAAGTTGCCAAAGCTG 750
consensus_11059#1      TAATAGAAGCACATGGTTGGCCAACCGGTGGATCTTCCGCCTACAAAGTTGCCAAAGCTG 779
                       ************************************************************

consensus_11059#0      CCCTTAATGCATACACAAGGATTCTTGCCAAGAAGTACCCTACACTACGTATCAACTGTT 1549
consensus_11059#2      CCCTTAATGCATACACAAGGATTCTTGCNCAGAAGTACCCTACACTACGTATCAACTGTT 810
consensus_11059#1      CCCTTAATGCATACACAAGGATTCTTGCCAAGAAGTACCCTACACTACGTATCAACTGTT 839
                       ****************************  ******************************

consensus_11059#0      TGACACCTGGTTATGTCAAGACTGACATCTCAATGCACATGGGAGTATTGACACCTGAAG 1609
consensus_11059#2      TGACACCT---------------------------------------------------- 818
consensus_11059#1      TGACACCTGGTTATGTCAAGACTGACATCTCAATGCACATGGGAGTATTGACACCTGAAG 899
                       ********                                                    

consensus_11059#0      AGGGTGCTAGTAACTCCGTAAAGGTAGCTCTCTTGCCTGATGATGGTCCAACAGGTGCTT 1669
consensus_11059#2      ------------------------------------------------------------
consensus_11059#1      AGGGTGCTAGTAACTCCGTAAAGGTAGCTCTCTTGCCTGATGATGGTCCAACAGGTGCTT 959
                                                                                   

consensus_11059#0      ATTTTGATCGGAATGGCGAGGCATCTTTTGTGTGATCATAGTTTCTGCTTTCTTTAACCT 1729
consensus_11059#2      ------------------------------------------------------------
consensus_11059#1      ATTTTGATTGGAATGGCGAGGCATCTTTTGTGTGATCATAGTTTCTGCTTTCTTTACCCT 1019
                                                                                   

consensus_11059#0      ATAGTTTCAGAATAAGAGATTGTCAAAGTAGTTGTGCCCAACAGACAATGTAGTTTTGAC 1789
consensus_11059#2      ------------------------------------------------------------
consensus_11059#1      ATAGTTTCAGAATAAGAGATTGTCAAAGTAGTTGTGCCCAACAGACAATGTAGTTTTGAC 1079
                                                                                   

consensus_11059#0      TTGTGTACTCAAAC-TGATGTATTGAAGTTGAAATAGTAGAGCTTTACATCGATATCATG 1848
consensus_11059#2      ------------------------------------------------------------
consensus_11059#1      TTGTGTACTCAAACCTGAAGGATTGAAGTTGAAATAGTAGAGCTTTCCATCGAAAAAAAA 1139
                                                                                   

consensus_11059#0      ATTTTATCTATTTTCTCAAAAAAAAAAA 1876
consensus_11059#2      ----------------------------
consensus_11059#1      GA-------------------------- 1141
                                                   




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)