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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11060#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1943 fasta sequence
[TGTTTGTCCTGCTGCTTCAGAGTTCAGCTGCATCCCCGTGAACACATCCTCCGCCGCCGCCGCCGCCGATCTCCATCCATCCCACGAGCGAGCAGGGGTGTCGTCGTTCGTCCTACCGCTTCCGCCGCATCCTGATTTTGATTTGGCACTTGAAGCTTGTGTCAGCACACAAGGTAAAGATCCTAGGTGTATCCGCCACTGGCCGGGGTGGATCTGGTACGACGCAGATACCCCCACCAGCACAGATTTCGCAACAACAGAGAAGAGCGAGGTGGGGCAATGGAACAAGAAGCAGTGACAGCTTTGGTGGCCGATCAAGAGGAAGTGGCGCAGCTCGGGGAGGGTATCCTCCACCACTTCGAGGAAATCCTCCATCAAGACCCCCTCATAGATGAAGTGGGGTTCTTGCACCCAACATAGTTCCAGTCGCTAGAACACAGCCAAACTGGTTATTGGACATCTCAAGCACCTGAATGTCCTCGGAGATACCTCTGGTGCAAAGACCACAAGCTTGCCATATCCATGGAAATCCTACCTAAGCTCTACCGTGCTGCACGGCATGCATACTCCAATTCAGCAGCAGCCAAGGATGGTCCACTCATGGAAATTGATCTGATGAGGCACAGCAAGGCATTGCTCATTCTTTGCCCTGACATGCTCACTGCATGGAATTCGAGGAAGATGGTACTATCAGTGAATTATGATTTCACTAAACTCAAGGATGAGCTGCAATTGTGTGCCTTGATCCTTTCATGCTCACCAAAAAACGAAAGCACCTGGAGCCATAGGAGATGGGTGATCAAGAAGGTTTCAGAACACAACCAGGATGTGTCGGAGCTTATAGAGAGGGAATCTGTACTAGTGAAAGAGATAGCAGAGAAATCAAAGATGAACTACCGTGCGTGGAGGCATCGCTGCTGGCTTATTCCCTACATGACAAGAGAACAGGTTCTGAATGAGTTAAAGAAATCAACAAGATGGAACGAGTTACATGTCGCTGACAACTGTTGTTTTCACTACCGACGGTCCCTACTGCTTGCATTACTAGACAGTTGCCATGTAGAGGACACAGAAGATTCCCTTGATAGGAAGTCAGAAGTTCATTTACTGTGGAAGGTATGTTGTATTTCATTAGAATCTATACCTGCTTCACTATGGTTCCCCTTGTGCCATCTTTCCCTCTGTTTTTCATTGTACATCTGTTACAAAGGAGAAACTCGCCTGTGCATTTTTTTTCGGGAATACGCAAGGAGCGCTCGCCTGTGCATTTTGTTTTATTTCACAAACATTGATTTCTCTGGTGCTTGAGTAATTGCATCTGACAGGAGGAACTGACGTGGAATCAGATGCTTATCAGACGCTACCAAGGGAGAGAGGTTTGAAGTTTGGCCATCGTGATTCTGACATTTTATCCATAATTTATTGTGTATGTTGTTCCCTTGCGTTGATTGTGCTGATTCGTTGGTGTAGTCTTTGTGGATCCATCGTATTTTCCTCTCGCAATGGTGGGTGAAGTTCTCGCTCAGCAGTGAGGAAACAGAGTGTGCTGCAGGCACTTCGCTGGTGGACCTCTTCCTAGCCCAGGAGATATACCTCCTGTCAGACCGCCTGAATGCTCCTGCCGATGAATTTGGTGAGGCATGTGTTCAAACTGAGCTTGCAGCCCTCTACATTCTCTGGATATCAAAGCAAGTTCCGGCTGTGAAACTAAAGCTGGAAAAAAGGCTACATTCGGTGGGGAGCCTGGAGGATGTCTTAGCAAGGGCCTGCCCACTATTGAAAGCAGAACAAGGACATGCATTGCAGCATACGTACAGAGTTACTGATGAAACGACGACATATGGTTATCTAGTACTGTAGCCTGTATGGTCTAATATGTTCATTGTTCTGCTTTTCTGTTGCAGTCTTCTTTATGTAGTGGAAATACTGAAGAAATGGCTATG]
[+] EMBL AK073525 [TGTTTGTCCTGCTGCTTCAGAGTTCAGCTGCATCCCCGTGAACACATCCTCCGCCGCCGCCGCCGCCGATCTCCATCCATCCCACGAGCGAGCAGGGGTGTCGTCGTTCGTCCTACCGCTTCCGCCGCATCCTGATTTTGATTTGGCACTTGAAGCTTGTGTCAGCACACAAGGTAAAGATCCTAGGTGTATCCGCCACTGGCCGGGGTGGATCTGGTACGACGCAGATACCCCCACCAGCACAGATTTCGCAACAACAGAGAAGAGCGAGGTGGGGCAATGGAACAAGAAGCAGTGACAGCTTTGGTGGCCGATCAAGAGGAAGTGGCGCAGCTCGGGGAGGGTATCCTCCACCACTTCGAGGAAATCCTCCATCAAGACCCCCTCATAGATGAAGTGGGGTTCTTGCACCCAACATAGTTCCAGTCGCTAGAACACAGCCAAACTGGTTATTGGACATCTCAAGCACCTGAATGTCCTCGGAGATACCTCTGGTGCAAAGACCACAAGCTTGCCATATCCATGGAAATCCTACCTAAGCTCTACCGTGCTGCACGGCATGCATACTCCAATTCAGCAGCAGCCAAGGATGGTCCACTCATGGAAATTGATCTGATGAGGCACAGCAAGGCATTGCTCATTCTTTGCCCTGACATGCTCACTGCATGGAATTCGAGGAAGATGGTACTATCAGTGAATTATGATTTCACTAAACTCAAGGATGAGCTGCAATTGTGTGCCTTGATCCTTTCATGCTCACCAAAAAACGAAAGCACCTGGAGCCATAGGAGATGGGTGATCAAGAAGGTTTCAGAACACAACCAGGATGTGTCGGAGCTTATAGAGAGGGAATCTGTACTAGTGAAAGAGATAGCAGAGAAATCAAAGATGAACTACCGTGCGTGGAGGCATCGCTGCTGGCTTATTCCCTACATGACAAGAGAACAGGTTCTGAATGAGTTAAAGAAATCAACAAGATGGAACGAGTTACATGTCGCTGACAACTGTTGTTTTCACTACCGACGGTCCCTACTGCTTGCATTACTAGACAGTTGCCATGTAGAGGACACAGAAGATTCCCTTGATAGGAAGTCAGAAGTTCATTTACTGTGGAAGGTATGTTGTATTTCATTAGAATCTATACCTGCTTCACTATGGTTCCCCTTGTGCCATCTTTCCCTCTGTTTTTCATTGTACATCTGTTACAAAGGAGAAACTCGCCTGTGCATTTTTTTTCGGGAATACGCAAGGAGCGCTCGCCTGTGCATTTTGTTTTATTTCACAAACATTGATTTCTCTGGTGCTTGAGTAATTGCATCTGACAGGAGGAACTGACGTGGAATCAGATGCTTATCAGACGCTACCAAGGGAGAGAGGTTTGAAGTTTGGCCATCGTGATTCTGACATTTTATCCATAATTTATTGTGTATGTTGTTCCCTTGCGTTGATTGTGCTGATTCGTTGGTGTAGTCTTTGTGGATCCATCGTATTTTCCTCTCGCAATGGTGGGTGAAGTTCTCGCTCAGCAGTGAGGAAACAGAGTGTGCTGCAGGCACTTCGCTGGTGGACCTCTTCCTAGCCCAGGAGATATACCTCCTGTCAGACCGCCTGAATGCTCCTGCCGATGAATTTGGTGAGGCATGTGTTCAAACTGAGCTTGCAGCCCTCTACATTCTCTGGATATCAAAGCAAGTTCCGGCTGTGAAACTAAAGCTGGAAAAAAGGCTACATTCGGTGGGGAGCCTGGAGGATGTCTTAGCAAGGGCCTGCCCACTATTGAAAGCAGAACAAGGACATGCATTGCAGCATACGTACAGAGTTACTGATGAAACGACGACATATGGTTATCTAGTACTGTAGCCTGTATGGTCTAATATGTTCATTGTTCTGCTTTTCTGTTGCAGTCTTCTTTATGTAGTGGAAATACTGAAGAAATGGCTATG]
consensusID : consensus_11060#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1895 fasta sequence
[GCGGGGGCACGCCGCACGGGCACCACCTCGCCGCCCGCCACCACCGCTTCCTCACCCGCCGCAGCCACCGCCTCCACCTCCTCCTCCTCCACCACCTTCCTAGCCCTGCTGCCGCTTCTCGTACTCTCCATCCCCGTAGTCGGCATCCGTGCGGCCTCAGCACACCTCCTCCATCTCCCAGATGGCCACATGACTACACAGTGGCGCTCAGCCACGTCTCCCCTCCCCTACGGCAAGTTCAGAGAAGACGGAGCTGGGGGTAGGCCGGCAACGAGTCGCCATCTCCTCCCCACGAGCCCACGCCTCCCCGCCTCAGCCGCCGCGGCCCACCACTCCGGCTTCCACCTCAGATCGCGAATCGCAAGACTTTGATTTGGCACTTGAGGCGTCAGAACACAAAGGGTAAAGATCCTCGGTTTGCCACTGGCTGGGGTGGATCTGGTGTGACGCAGATACCCCAAAGCACTGAGAAGCCATTGAGGAAGCTCACTCTTGAGGACACGCGCCCCTTTGGCTGCACTAGCACAGATTTCACAAGAACAGAGAAGAGTGAGGAGAGCAATGGAACAAGAAGCAGCAACAGCTTTGGCAGCCAAGCAAGAGGAAGTGGCGCAGCTCGGGGAGGGTATCCTCCACCACTTTGAGCAAATCCTCCATCAAGATTCCCTCATAGATGAAGTGGGGTTCTTGCACCCGACACAGTTCCAGTCACTAGAACACAGCCAGACTAGTAATTGGACATTTGAAGTACCTGAATGTCCTCAGAGATACCTGTGGTGCAAAGACCATAAGCTTGCCATATCCACGGAAATCTTACCTAAGCTCTACCGTGCTGCACAGCATGCATACTCCAATTCAGCAGCAGCCAAGGATGGTTCATTCATGGAAACTGATCTGATGAGGCACAGCAAGGCACTGCTCATTCTTTGCCCTGACATGCTCACCGCATGGAACTCAAGGAAGATAGTGCTATCAGTGAATTATGATTTCACTAAGCTCAAGGATGAGCTGCAATTGTGTGCTCTGATCCTTTCATACTCACCAAAAAACGAAAGCACCTGGAGCCATAGGAGATGGGTGATCAAGAAGGTTTCAGAGCACAACCAGGATGTGTCGGAGCTTATAGAGATGGAATCTGTACTAGTGAAACAGATAGCAGAGAAATCAAAGATGAACTACCGTGCGTGGAGGCATCGCTGCTGGCTTATTCCCTACATGACAAGAGAACAGGTTCTGAATGAGTTAAAGAAATCAACAAGATGGAACGAGTTACATGTCGCTGACAACTGTTGTTTTCACTACCGACGGTCCCTACTGCTTGCATTACTAGACAGTTGCCATGTAGAGGACACAGAAGATTCCCTTGATAGGAAGTCAGAAGTTCATTTACTGTGGAAGGAGGAACTGACGTGGAATGAGAAACTTATCAGGCGCTACCAAGGGAGAGAGTCTTTGTGGATCCATCGTAGGTTCCTCTCACAATGGTGGATGAAGTTCTTGCTCAGCAGTGAGGAAACAGAGTGTGCTGCAGGCACATCGCTGGTGGATCTCTTCCTAGTCCAGGAGATATACCTCCTGTCAGACTGCCTGAATGCCCCTGCCGATGAATTTGGTGAGGCATGTGTCCAATCTGAACTTGCAGCCCTCTACATTCTCTGGATATCAAAGCAAGTTCCGGCTGTGAAACTAAAGCTGGAAGAAAGGCTACATTCGTTGGGGAGCCTGGAGGATGTGTTAGCAAGGGCCTGCCCGGAGAGAAGTAGATTGTGGACGCATTTGATAGCTTGACTATTGAAAGCAGAACAAGGACATGCATTGTAGCAATATGTGGTACTCATATCCAACGGAAAACGACGCTTGGAATACAACCATTTCTGAGGCGACTAGACATTTTG]
[+] EMBL AK106529 [GCGGGGGCACGCCGCACGGGCACCACCTCGCCGCCCGCCACCACCGCTTCCTCACCCGCCGCAGCCACCGCCTCCACCTCCTCCTCCTCCACCACCTTCCTAGCCCTGCTGCCGCTTCTCGTACTCTCCATCCCCGTAGTCGGCATCCGTGCGGCCTCAGCACACCTCCTCCATCTCCCAGATGGCCACATGACTACACAGTGGCGCTCAGCCACGTCTCCCCTCCCCTACGGCAAGTTCAGAGAAGACGGAGCTGGGGGTAGGCCGGCAACGAGTCGCCATCTCCTCCCCACGAGCCCACGCCTCCCCGCCTCAGCCGCCGCGGCCCACCACTCCGGCTTCCACCTCAGATCGCGAATCGCAAGACTTTGATTTGGCACTTGAGGCGTCAGAACACAAAGGGTAAAGATCCTCGGTTTGCCACTGGCTGGGGTGGATCTGGTGTGACGCAGATACCCCAAAGCACTGAGAAGCCATTGAGGAAGCTCACTCTTGAGGACACGCGCCCCTTTGGCTGCACTAGCACAGATTTCACAAGAACAGAGAAGAGTGAGGAGAGCAATGGAACAAGAAGCAGCAACAGCTTTGGCAGCCAAGCAAGAGGAAGTGGCGCAGCTCGGGGAGGGTATCCTCCACCACTTTGAGCAAATCCTCCATCAAGATTCCCTCATAGATGAAGTGGGGTTCTTGCACCCGACACAGTTCCAGTCACTAGAACACAGCCAGACTAGTAATTGGACATTTGAAGTACCTGAATGTCCTCAGAGATACCTGTGGTGCAAAGACCATAAGCTTGCCATATCCACGGAAATCTTACCTAAGCTCTACCGTGCTGCACAGCATGCATACTCCAATTCAGCAGCAGCCAAGGATGGTTCATTCATGGAAACTGATCTGATGAGGCACAGCAAGGCACTGCTCATTCTTTGCCCTGACATGCTCACCGCATGGAACTCAAGGAAGATAGTGCTATCAGTGAATTATGATTTCACTAAGCTCAAGGATGAGCTGCAATTGTGTGCTCTGATCCTTTCATACTCACCAAAAAACGAAAGCACCTGGAGCCATAGGAGATGGGTGATCAAGAAGGTTTCAGAGCACAACCAGGATGTGTCGGAGCTTATAGAGATGGAATCTGTACTAGTGAAACAGATAGCAGAGAAATCAAAGATGAACTACCGTGCGTGGAGGCATCGCTGCTGGCTTATTCCCTACATGACAAGAGAACAGGTTCTGAATGAGTTAAAGAAATCAACAAGATGGAACGAGTTACATGTCGCTGACAACTGTTGTTTTCACTACCGACGGTCCCTACTGCTTGCATTACTAGACAGTTGCCATGTAGAGGACACAGAAGATTCCCTTGATAGGAAGTCAGAAGTTCATTTACTGTGGAAGGAGGAACTGACGTGGAATGAGAAACTTATCAGGCGCTACCAAGGGAGAGAGTCTTTGTGGATCCATCGTAGGTTCCTCTCACAATGGTGGATGAAGTTCTTGCTCAGCAGTGAGGAAACAGAGTGTGCTGCAGGCACATCGCTGGTGGATCTCTTCCTAGTCCAGGAGATATACCTCCTGTCAGACTGCCTGAATGCCCCTGCCGATGAATTTGGTGAGGCATGTGTCCAATCTGAACTTGCAGCCCTCTACATTCTCTGGATATCAAAGCAAGTTCCGGCTGTGAAACTAAAGCTGGAAGAAAGGCTACATTCGTTGGGGAGCCTGGAGGATGTGTTAGCAAGGGCCTGCCCGGAGAGAAGTAGATTGTGGACGCATTTGATAGCTTGACTATTGAAAGCAGAACAAGGACATGCATTGTAGCAATATGTGGTACTCATATCCAACGGAAAACGACGCTTGGAATACAACCATTTCTGAGGCGACTAGACATTTTG]
[+] EMBL OSS13155A [ CCACATGACTACACAGTGGCGCTCAG CACGTCTCCCCTCCCCTACGGCAAGTTCAGAGAAGACGGAGCTGGGGGTAGGCCGGCAACGAGTCGCCATCTCCTCCCCACGAGCCCACGCCTCCCCGCCTCAGCCGCCGCGGCCCACCACTCCGGCTTCCACCTCAGATTGCGAATCGCAAGACTTTGATTTGGCACTTGAGGCGTCAGAACACAAAGGGTAAAGATCCTCGGTTTGCCACTGGCTGGGGTGGATCTGGTGTTACGCAGATACCCCAAAGCACTTAGAAGNCATTNAGGGAGCTCACTC ]
[-] EMBL CB677951 [ GAGCACAACCAGGATGTGTCGGAGCTTATAGAGATGGAATCTGTACTAGTGAAACAGATAGCAGAGAAATCAAAGATGAACTNCCGTGCGTGGAGGCATCGCTGCTGGCTTATTCCCTACATGACAAGAGAACAGGTTCTGAATGAGTTAAAGAAATCAACAAGATGGAACGAGTTACATGTCGCTGACAACTGTTGTTTTCACTACCGACGGTCCCTACTGCTTGCATTACTAGACAGTTGCCATGTAGAGGACACAGAAGATTCCCTTGATAGGAAGTCAGAAGTTCATTTACTGTGGAAGGAGGAACTGACGTGGAATGAGAAACTTATCAGGCGCTACCAAGGGAGAGAGTCTTTGTGGATCCATCGTAGGTTCCTCTCACAATGGTGGATGAAGTTCTTGCTCAGCAGTGAGGAAACAGAGTGTGCTGCAGGCACATCGCTGGTGGATCTCTTCCTAGTCCAGGAGATATACCTCCTGTCAGACTGCCTGAATGCCCCTGCCGATGAATTTGGTGAGGCATGTGTCCAATCTGAACTTGCAGCCCTCTACATTCTCTGGATATCAAAGCAAGTTCCGGCTGTGAAACTAAAGCTGGAAGAAAGGCTACATTCGTTGGGGAGCCTGGAGGATGTGTTAGCAAGGGCCTGCCCGGAGAGAAGTAGATTGTGGACGCATTTGATAGCTTGACTATTGAAAGCAGAACAAGGACATGCATTGTAGCAATATGTGGTACTCATATCCAACGGAAAAGGACGCTTGGAATACAACCATTTCTGA ]
consensusID : consensus_11060#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 556 fasta sequence
[ATCAGGCGCTACCAAGGGAGAGAGGTTTGAAGTTTGCCCATCATGATTGTGACATTTTTATGTTAGTGCCATAATTTCTAGTGAATGTTGTTCCCCTATGTTGATTGTNCTAGTGTGTTGGTGTAGTCTTTGTGGATCCATCGTAGGTTCCTCTCACAATGGTGGATGAAGTTCTTGCTCAGCAGTGAGGAAACAGAGTGTGCTGCAGGCACATCGCTGGTGGATCTCTTCCTAGTCCAGGAGATATACCTCCTGTCAGACTGCCTGAATGCCCCTGCCCGATGAATTTGGTGAGGCATGTGTCCAATCTGAACTTGCAGCCCTCTACATTCTCTNGATATCAAAGCAAGTTCCGGCTGTG-AACTAAAGCTTGGAGGAAAGGCTACATTCGTTGGGGAGCCTGGAGGATGTTTTAGCAAGGGCCTNCCCGAGGAGAAGTAGATTGTGGACGCATTTGATAGCTTGACTATTGAAAGCAGAACAAGGACATGCATTGTAGCAATATGTGGTACTCATATCCAACGGAAAACGACGCTTGTGATACAAAAAAAAAAAA]
[+] EMBL OSC0821 [ATCAGGCGCTACCAAGGGAGAGAGGTTTGAAGTTTGCCCATCATGATTGTGACATTTTTATGTTAGTGCCATAATTTCTAGTGAATGTTGTTCCCCTATGTTGATTGTNCTAGTGTGTTGGTGTAGTCTTTGTGGATCCATCGTAGGTTCCTCTCACAATGGTGGATGAAGTTCTTGCTCAGCAGTGAGGAAACAGAGTGTGCTGCAGGCACATCGCTGGTGGATCTCTTCCTAGTCCAGGAGATATACCTCCTGTCAGACTGCCTGAATGCCCCTGCCCGATGAATTTGGTGAGGCATGTGTCCAATCTGAACTTGCAGCCCTCTACATTCTCTNGATATCAAAGCAAGTTCCGGCTGTG AACTAAAGCTTGGAGGAAAGGCTACATTCGTTGGGGAGCCTGGAGGATGTTTTAGCAAGGGCCTNCCCGAG ]
[+] EMBL AU161728 [ CAGAGTGTGCTGCAGGCACATCGCTGGTGGATCTCTTCCTAGTCCAGGAGATATACCTCCTGTCAGACTGCCTGAATGCCCCTG CCGATGAATTTGGTGAGGCATGTGTCCAATCTGAACTTGCAGCCCTCTACATTCTCTGGATATCAAAGCAAGTTCCGGCTGTGAAACTAAAGC TGGAAGAAAGGCTACATTCGTTGGGGAGCCTGGAGGATGTGTTAGCAAGGGCCTGCCCGGAGAGAAGTAGATTGTGGACGCATTTGATAGCTTGACTATTGAAAGCAGAACAAGGACATGCATTGTAGCAATATGTGGTACTCATATCCAACGGAAAACGACGCTTGTGATACAAAAAAAAAAAA]
consensusID : consensus_11060#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 391 fasta sequence
[AATCAGATGCTTATCAGACGCTACCAAGGGAGAGAGTCTTTGTGGATCCATCGTATTTTCCTCTCGCAATGGTGGGTGAAGTTCTCGCTCAGCAGTGAGGAAACAGAGTGTGCTGCAGGCACTTCGCTGGTGGACCTCTTCCTAGCCCAGGAGATATACCTCCTGTCAGACCGCCTGAATGCTCCTGCCGATGAATTTGGTGAGGCATGTGTTCAAACTGAGCTTGCAGCCCTCTACATTCTCTGGATATCAAAGCAAGTTCCGGCTGTGAAACTAAAGCTGGAAAAAAGGCTACATTCGGTGGGGAGCCTGGAGGATGTCTTAGCAAGGGCCTGCCCACTATTGAAAGCAGAACAAGGACATGCATTGCAGCATACGTACAGAGGTTACT]
[+] EMBL OS2048A [AATCAGATGCTTATCAGACGCTACCAAGGGAGAGAGTCTTTGTGGATCCATCGTATTTTCCTCTCGCAATGGTGGGTGAAGTTCTCGCTCAGCAGTGAGGAAACAGAGTGTGCTGCAGGCACTTCGCTGGTGGACCTCTTCCTAGCCCAGGAGATATACCTCCTGTCAGACCGCCTGAATGCTCCTGCCGATGAATTTGGTGAGGCATGTGTTCAAACTGAGCTTGCAGCCCTCTACATTCTCTGGATATCAAAGCAAGTTCCGGCTGTGAAACTAAAGCTGGAAAAAAGGCTACATTCGGTGGGGAGCCTGGAGGATGTCTTAGCAAGGGCCTGCCCACTATTGAAAGCAGAACAAGGACATGCATTGCAGCATACGTACAGAGGTTACT]
consensusID : consensus_11060#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 290 fasta sequence
[ATGAATTTGGTGAGGCATNTGTCCAATCTGAACTTGCAGCCCTCTACATTCTCTGGATATCAAAGCAAGTTCCGGCTGTGAAACTAAAGCTGGAAGAAAGGCTACATTCGTTGGGGAGCCTGGAGGATGTGTTAGCAAGGGCCTGCCCGGAGAGAAGTAGATTGTGGACGCATTTGATAGCTTGACTATTGAAAGCAGAACAAGGACATGCATTGTAGCAATATGTGGTACTCATATCCAACGGAAAACGACGCTTGGAATACAACCATTTCTGAGGCGAAAAAAAAAAA]
[+] EMBL AU101760 [ATGAATTTGGTGAGGCATNTGTCCAATCTGAACTTGCAGCCCTCTACATTCTCTGGATATCAAAGCAAGTTCCGGCTGTGAAACTAAAGCTGGAAGAAAGGCTACATTCGTTGGGGAGCCTGGAGGATGTGTTAGCAAGGGCCTGCCCGGAGAGAAGTAGATTGTGGACGCATTTGATAGCTTGACTATTGAAAGCAGAACAAGGACATGCATTGTAGCAATATGTGGTACTCATATCCAACGGAAAACGACGCTTGGAATACAACCATTTCTGAGGCGAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_11060#0 TGTTTGTCCTGCTGCTTCAGAGTTCAGCTGCATCCCCGTGAACACATCCTCCGCCGCCGC 60
consensus_11060#3 ------------------------------------------------------------
consensus_11060#2 ------------------------------------------------------------
consensus_11060#1 ------------------------GCGGGGGCACGCCGCACGGGCACCACCTCGCCGCCC 36
consensus_11060#4 ------------------------------------------------------------
consensus_11060#0 CGCCGCCGATCTCCATCCATCCCACGAGCGAGCAGGGGTGTCGTCGTTCGTCCTACCGCT 120
consensus_11060#3 ------------------------------------------------------------
consensus_11060#2 ------------------------------------------------------------
consensus_11060#1 GCCACCACCGCTTCCTCACCCGCCGCAGCCACCGCCTCCACCTCCTCCTCCTCCACCACC 96
consensus_11060#4 ------------------------------------------------------------
consensus_11060#0 TCCGCCGCATCCTGATTTTGATTTGGCACTTGAAGCTTGTGTCAGCACACAAGGTAAAGA 180
consensus_11060#3 ------------------------------------------------------------
consensus_11060#2 ------------------------------------------------------------
consensus_11060#1 TTCCTAGCCCTGCTGCCGCTTCTCGTACTCTCCATCCCCGTAGTCGGCATCCGTGCGGCC 156
consensus_11060#4 ------------------------------------------------------------
consensus_11060#0 TCCTAGGTGTATCCGCCACTGGCCGGGGTGGATCTGGTACGACGCAGATACCCCCACCAG 240
consensus_11060#3 ------------------------------------------------------------
consensus_11060#2 ------------------------------------------------------------
consensus_11060#1 TCAGCACACCTCCTCCATCTCCCAGATGGCCACATGACTACACAGTGGCGCTCAGCCACG 216
consensus_11060#4 ------------------------------------------------------------
consensus_11060#0 CACAGATTTCGCAACAACAGAGAAGAGCGAGGTGGGGCAATGGAACAAGAAGCAGTGACA 300
consensus_11060#3 ------------------------------------------------------------
consensus_11060#2 ------------------------------------------------------------
consensus_11060#1 TCTCCCCTCCCCTACGGCAAGTTCAGAGAAGACGGAGCTGGGGGTAGGCCGGCAACGAGT 276
consensus_11060#4 ------------------------------------------------------------
consensus_11060#0 GCTTTGGTGGCCGATCAAGAGGAAGTGGCGCAGCTCGGGGAGGGTATCCTCCACCACTTC 360
consensus_11060#3 ------------------------------------------------------------
consensus_11060#2 ------------------------------------------------------------
consensus_11060#1 CGCCATCTCCTCCCCACGAGCCCACGCCTCCCCGCCTCAGCCGCCGCGGCCCACCACTCC 336
consensus_11060#4 ------------------------------------------------------------
consensus_11060#0 GAGGAAATCCTCCATCAAGACCCCCTCATAGATGAAGTGGGGTTCTTGCACCCAACATAG 420
consensus_11060#3 ------------------------------------------------------------
consensus_11060#2 ------------------------------------------------------------
consensus_11060#1 GGCTTCCACCTCAGATCGCGAATCGCAAGACTTTGATTTGGCACTTGAGGCGTCAGAACA 396
consensus_11060#4 ------------------------------------------------------------
consensus_11060#0 TTCCAGTCGCTAGAACACAGCCAAACTGGTTATTGGACATCTCAAGCACCTGAATGTCCT 480
consensus_11060#3 ------------------------------------------------------------
consensus_11060#2 ------------------------------------------------------------
consensus_11060#1 CAAAGGGTAAAGATCCTCGGTTTGCCACTGGCTGGGGTGGATCTGGTGTGACGCAGATAC 456
consensus_11060#4 ------------------------------------------------------------
consensus_11060#0 CGGAGATACCTCTGGTGCAAAGACCACAAGCTTGCCATATCCATGGAAATCCTACCTAAG 540
consensus_11060#3 ------------------------------------------------------------
consensus_11060#2 ------------------------------------------------------------
consensus_11060#1 CCCAAAGCACTGAGAAGCCATTGAGGAAGCTCACTCTTGAGGACACGCGCCCCTTTGGCT 516
consensus_11060#4 ------------------------------------------------------------
consensus_11060#0 CTCTACCGTGCTGCACGGCATGCATACTCCAATTCAGCAGCAGCCAAGGATGGTCCACTC 600
consensus_11060#3 ------------------------------------------------------------
consensus_11060#2 ------------------------------------------------------------
consensus_11060#1 GCACTAGCACAGATTTCACAAGAACAGAGAAGAGTGAGGAGAGCAATGGAACAAGAAGCA 576
consensus_11060#4 ------------------------------------------------------------
consensus_11060#0 ATGGAAATTGATCTGATGAGGCACAGCAAGGCATTGCTCATTCTTTGCCCTGACATGCTC 660
consensus_11060#3 ------------------------------------------------------------
consensus_11060#2 ------------------------------------------------------------
consensus_11060#1 GCAACAGCTTTGGCAGCCAAGCAAGAGGAAGTGGCGCAGCTCGGGGAGGGTATCCTCCAC 636
consensus_11060#4 ------------------------------------------------------------
consensus_11060#0 ACTGCATGGAATTCGAGGAAGATGGTACTATCAGTGAATTATGATTTCACTAAACTCAAG 720
consensus_11060#3 ------------------------------------------------------------
consensus_11060#2 ------------------------------------------------------------
consensus_11060#1 CACTTTGAGCAAATCCTCCATCAAGATTCCCTCATAGATGAAGTGGGGTTCTTGCACCCG 696
consensus_11060#4 ------------------------------------------------------------
consensus_11060#0 GATGAGCTGCAATTGTGTGCCTTGATCCTTTCATGCTCACCAAAAAACGAAAGCACCTGG 780
consensus_11060#3 ------------------------------------------------------------
consensus_11060#2 ------------------------------------------------------------
consensus_11060#1 ACACAGTTCCAGTCACTAGAACACAGCCAGACTAGTAATTGGACATTTGAAGTACCTGAA 756
consensus_11060#4 ------------------------------------------------------------
consensus_11060#0 AGCCATAGGAGATGGGTGATCAAGAAGGTTTCAGAACACAACCAGGATGTGTCGGAGCTT 840
consensus_11060#3 ------------------------------------------------------------
consensus_11060#2 ------------------------------------------------------------
consensus_11060#1 TGTCCTCAGAGATACCTGTGGTGCAAAGACCATAAGCTTGCCATATCCACGGAAATCTTA 816
consensus_11060#4 ------------------------------------------------------------
consensus_11060#0 ATAGAGAGGGAATCTGTACTAGTGAAAGAGATAGCAGAGAAATCAAAGATGAACTACCGT 900
consensus_11060#3 ------------------------------------------------------------
consensus_11060#2 ------------------------------------------------------------
consensus_11060#1 CCTAAGCTCTACCGTGCTGCACAGCATGCATACTCCAATTCAGCAGCAGCCAAGGATGGT 876
consensus_11060#4 ------------------------------------------------------------
consensus_11060#0 GCGTGGAGGCATCGCTGCTGGCTTATTCCCTACATGACAAGAGAACAGGTTCTGAATGAG 960
consensus_11060#3 ------------------------------------------------------------
consensus_11060#2 ------------------------------------------------------------
consensus_11060#1 TCATTCATGGAAACTGATCTGATGAGGCACAGCAAGGCACTGCTCATTCTTTGCCCTGAC 936
consensus_11060#4 ------------------------------------------------------------
consensus_11060#0 TTAAAGAAATCAACAAGATGGAACGAGTTACATGTCGCTGACAACTGTTGTTTTCACTAC 1020
consensus_11060#3 ------------------------------------------------------------
consensus_11060#2 ------------------------------------------------------------
consensus_11060#1 ATGCTCACCGCATGGAACTCAAGGAAGATAGTGCTATCAGTGAATTATGATTTCACTAAG 996
consensus_11060#4 ------------------------------------------------------------
consensus_11060#0 CGACGGTCCCTACTGCTTGCATTACTAGACAGTTGCCATGTAGAGGACACAGAAGATTCC 1080
consensus_11060#3 ------------------------------------------------------------
consensus_11060#2 ------------------------------------------------------------
consensus_11060#1 CTCAAGGATGAGCTGCAATTGTGTGCTCTGATCCTTTCATACTCACCAAAAAACGAAAGC 1056
consensus_11060#4 ------------------------------------------------------------
consensus_11060#0 CTTGATAGGAAGTCAGAAGTTCATTTACTGTGGAAGGTATGTTGTATTTCATTAGAATCT 1140
consensus_11060#3 ------------------------------------------------------------
consensus_11060#2 ------------------------------------------------------------
consensus_11060#1 ACCTGGAGCCATAGGAGATGGGTGATCAAGAAGGTTTCAGAGCACAACCAGGATGTGTCG 1116
consensus_11060#4 ------------------------------------------------------------
consensus_11060#0 ATACCTGCTTCACTATGGTTCCCCTTGTGCCATCTTTCCCTCTGTTTTTCATTGTACATC 1200
consensus_11060#3 ------------------------------------------------------------
consensus_11060#2 ------------------------------------------------------------
consensus_11060#1 GAGCTTATAGAGATGGAATCTGTACTAGTGAAACAGATAGCAGAGAAATCAAAGATGAAC 1176
consensus_11060#4 ------------------------------------------------------------
consensus_11060#0 TGTTACAAAGGAGAAACTCGCCTGTGCATTTTTTTTCGGGAATACGCAAGGAGCGCTCGC 1260
consensus_11060#3 ------------------------------------------------------------
consensus_11060#2 ------------------------------------------------------------
consensus_11060#1 TACCGTGCGTGGAGGCATCGCTGCTGGCTTATTCCCTACATGACAAGAGAACAGGTTCTG 1236
consensus_11060#4 ------------------------------------------------------------
consensus_11060#0 CTGTGCATTTTGTTTTATTTCACAAACATTGATTTCTCTGGTGCTTGAGTAATTGCATCT 1320
consensus_11060#3 ------------------------------------------------------------
consensus_11060#2 ------------------------------------------------------------
consensus_11060#1 AATGAGTTAAAGAAATCAACAAGATGGAACGAGTTACATGTCGCTGACAACTGTTGTTTT 1296
consensus_11060#4 ------------------------------------------------------------
consensus_11060#0 GACAGGAGGAACTGACGTGGAATCAGATGCTTATCAGACGCTACCAAGGGAGAGAGGTTT 1380
consensus_11060#3 ------------------------------------------------------------
consensus_11060#2 --------------------------------ATCAGGCGCTACCAAGGGAGAGAGGTTT 28
consensus_11060#1 CACTACCGACGGTCCCTACTGCTTGCATTACTAGACAGTTGCCATGTAGAGGACACAGAA 1356
consensus_11060#4 ------------------------------------------------------------
consensus_11060#0 GAAGTTTGGCCATCGTGATTCTGACATTTTAT--------CCATAATTTATTGTGTATGT 1432
consensus_11060#3 ------------------------------------------------------------
consensus_11060#2 GAAGTTTGCCCATCATGATTGTGACATTTTTATGTTAGTGCCATAATTTCTAGTGAATGT 88
consensus_11060#1 GATTCCCTTGATAGGAAGTCAGAAGTTCATTT-----ACTGTGGAAGGAGGAACTGACGT 1411
consensus_11060#4 ------------------------------------------------------------
consensus_11060#0 TGTTCCCTTGCGTTGATTGTGCTGATTCGTTGGTGTAGTCTTTGTGGATCCATCGTATTT 1492
consensus_11060#3 -AATCAGATGCTTATCAGACGCT-ACCAAGGGAGAGAGTCTTTGTGGATCCATCGTATTT 58
consensus_11060#2 TGTTCCCCTATGTTGATTGTNCTAGTGTGTTGGTGTAGTCTTTGTGGATCCATCGTAGGT 148
consensus_11060#1 GGAATGAGAAACTTATCAGGCGCTACCAAGGGAGAGAGTCTTTGTGGATCCATCGTAGGT 1471
consensus_11060#4 ------------------------------------------------------------
consensus_11060#0 TCCTCTCGCAATGGTGGGTGAAGTTCTCGCTCAGCAGTGAGGAAACAGAGTGTGCTGCAG 1552
consensus_11060#3 TCCTCTCGCAATGGTGGGTGAAGTTCTCGCTCAGCAGTGAGGAAACAGAGTGTGCTGCAG 118
consensus_11060#2 TCCTCTCACAATGGTGGATGAAGTTCTTGCTCAGCAGTGAGGAAACAGAGTGTGCTGCAG 208
consensus_11060#1 TCCTCTCACAATGGTGGATGAAGTTCTTGCTCAGCAGTGAGGAAACAGAGTGTGCTGCAG 1531
consensus_11060#4 ------------------------------------------------------------
consensus_11060#0 GCACTTCGCTGGTGGACCTCTTCCTAGCCCAGGAGATATACCTCCTGTCAGACCGCCTGA 1612
consensus_11060#3 GCACTTCGCTGGTGGACCTCTTCCTAGCCCAGGAGATATACCTCCTGTCAGACCGCCTGA 178
consensus_11060#2 GCACATCGCTGGTGGATCTCTTCCTAGTCCAGGAGATATACCTCCTGTCAGACTGCCTGA 268
consensus_11060#1 GCACATCGCTGGTGGATCTCTTCCTAGTCCAGGAGATATACCTCCTGTCAGACTGCCTGA 1591
consensus_11060#4 ------------------------------------------------------------
consensus_11060#0 ATGCTCCTGCC-GATGAATTTGGTGAGGCATGTGTTCAAACTGAGCTTGCAGCCCTCTAC 1671
consensus_11060#3 ATGCTCCTGCC-GATGAATTTGGTGAGGCATGTGTTCAAACTGAGCTTGCAGCCCTCTAC 237
consensus_11060#2 ATGCCCCTGCCCGATGAATTTGGTGAGGCATGTGTCCAATCTGAACTTGCAGCCCTCTAC 328
consensus_11060#1 ATGCCCCTGCC-GATGAATTTGGTGAGGCATGTGTCCAATCTGAACTTGCAGCCCTCTAC 1650
consensus_11060#4 -------------ATGAATTTGGTGAGGCATNTGTCCAATCTGAACTTGCAGCCCTCTAC 47
****************** *** *** **** ***************
consensus_11060#0 ATTCTCTGGATATCAAAGCAAGTTCCGGCTGTGAAACTAAAGCTGGAAAAAAGGCTACAT 1731
consensus_11060#3 ATTCTCTGGATATCAAAGCAAGTTCCGGCTGTGAAACTAAAGCTGGAAAAAAGGCTACAT 297
consensus_11060#2 ATTCTCTNGATATCAAAGCAAGTTCCGGCTGTGAACTAAAGCTTGGAGGAAAGGCTACAT 388
consensus_11060#1 ATTCTCTGGATATCAAAGCAAGTTCCGGCTGTGAAACTAAAGCTGGAAGAAAGGCTACAT 1710
consensus_11060#4 ATTCTCTGGATATCAAAGCAAGTTCCGGCTGTGAAACTAAAGCTGGAAGAAAGGCTACAT 107
******* *************************** ** **** ***********
consensus_11060#0 TCGGTGGGGAGCCTGGAGGATGTCTTAGCAAGGGCCTGCCCACTATTGAAAGCAGAACAA 1791
consensus_11060#3 TCGGTGGGGAGCCTGGAGGATGTCTTAGCAAGGGCCTGCCCACTATTGAAAGCAGAACAA 357
consensus_11060#2 TCGTTGGGGAGCCTGGAGGATGTTTTAGCAAGGGCCTNCCCG--AGGAGAAGTAGATTGT 446
consensus_11060#1 TCGTTGGGGAGCCTGGAGGATGTGTTAGCAAGGGCCTGCCCG--GAGAGAAGTAGATTGT 1768
consensus_11060#4 TCGTTGGGGAGCCTGGAGGATGTGTTAGCAAGGGCCTGCCCG--GAGAGAAGTAGATTGT 165
*** ******************* ************* *** *** ***
consensus_11060#0 GGACATGCATTGCAGCATACGTACAGAG-TTACTGATGAAACG-ACGACATATGGTTATC 1849
consensus_11060#3 GGACATGCATTGCAGCATACGTACAGAGGTTACT-------------------------- 391
consensus_11060#2 GGACGCATTTGATAGCTTGACTATTGAAAGCAGAACAAGGACATGCATTGTAGCAATATG 506
consensus_11060#1 GGACGCATTTGATAGCTTGACTATTGAAAGCAGAACAAGGACATGCATTGTAGCAATATG 1828
consensus_11060#4 GGACGCATTTGATAGCTTGACTATTGAAAGCAGAACAAGGACATGCATTGTAGCAATATG 225
**** * *** * ** ** *
consensus_11060#0 TAGTACTGTAGCCTGTATGGTCTAATATGTTCATTGTTCTGCTTTTCTGTTGCAGTCTTC 1909
consensus_11060#3 ------------------------------------------------------------
consensus_11060#2 TGGTACT----CATATCCAACGGAAAACGACGCTTGTGATACAAAAAAAAAAAA------ 556
consensus_11060#1 TGGTACT----CATATCCAACGGAAAACGACGCTTGGAATACAACCATTTCTGAGGCGAC 1884
consensus_11060#4 TGGTACT----CATATCCAACGGAAAACGACGCTTGGAATACAACCATTTCTGAGGCGAA 281
consensus_11060#0 TTTATGTAGTGGAAATACTGAAGAAATGGCTATG 1943
consensus_11060#3 ----------------------------------
consensus_11060#2 ----------------------------------
consensus_11060#1 TAGACATTTTG----------------------- 1895
consensus_11060#4 AAAAAAAAA------------------------- 290
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||