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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11062#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1945 fasta sequence
[AAACCACCCCAACCTGCACAACCTCTCCTCACCGAACCAAAATCTCACAGCTTCGCTTCTCTCTCGCCTCCCGAAGAAAATAGCTAGAGAAAAAATTCGCGGATCAAGAAGGAAAAAGAAAAGGAACACTTGAGCTTGTTTGGACTGACAACAATGGCGGCGAAGCGGCTTCACGACGGCTACGGACAGGAGGACCAGCCCGACGACAAGCGTGTGCGCCGCATGCCGTCCTTCTCGACGGTGATCCGTGAGGCCTTGATGGTGAAGCAGATGCAGACTCTGTTCGTCGCACTGGAGCCACTTCTCCGTAGAGTGGTGCAGGAGGAGCTCCAGGCAGGTCTCGTGCGCAGCCCGCGTTACATCGAGAGGATGTCGCCTGAGACGCCGCCGGCTCAGCCGCCGATGTGGAAGCTGGCGTTCCGGTTCAAGCCGCAGCTCCCGATCTTCACCGGGAGCAAGATCGAGGACGTGAACGGCAACCCACTGGAGATCATCCTCGTCGACGTCGACACCGGCGCGCCGGCGACGATCTCGCAGCCTCTGCGCGTCGAGGTCGTCCCGGTCCTGGGCGACTTCCCGCCGGACGACCGCGAGCACTGGACGGCGGAGGAGTTCCAGCAGAGGGGCATCGTGAAGGAGCGCTCCGGCAAGCGCCCGCTCCTCACCGGCGACGTCAGCCTCACCATGCGCGACGGCTGCGTCGTCGTGAACGAGCTCCAGTTCACGGACAACTCCTCCTGGGTTCGCTGCCGCAGGTTCCGCATCGGCGTCCGCGTCGTGCCGGGCAGCTACGACGGCCCAAGAATAGGCGAGGCCATGACCGAGCCCTTCGTCGTCAGAGACCACCGCGGCGAACTGTACAGGAAGCACTACCCTCCCGTTCTTGGCGACGATGTCTGGAGGCTTGAGAAGATTGGCAAGGAGGGTGCCTTCCACAGGAAGCTGACGCAGCACAACGTCAGGAACGTGCAGGAGTTCTTGCGGCTGCTCACGGTTAAGCCGGACGAGCTGCGCGCTATCATGGGCGACGGCATGACCGATCGCATGTGGGAGGTGACGACGAGCCACGCCAAGAAGTGCGTCCCCGGCGACAAGGTGTACATGTACAGCACGCAGCACGGCACCGTCTACGTCAACTCCATCTTCGAGCTCGTGAAGGTCGAGCTCGCCGGCGTGGAGTACCAGCTGCACCAGCTGAACAGGGGTCAGAAGGCGTTCGTGCATCAGCTGCTGCTGGCGGCGTACGAGCAGCGAAACAACCTCCAAGAGGCCGACGCCATGGCGCTCCACTGCAACGACGTTCCTCTGCTGCAGAATGCAGCGGAGATAACTATCCCGGCGCTTGGAGACACGCAGCTGTGGATTCAGAACAGTCTCAACAGCCAAGAAATCGACTTCCAGGTCGACGAGATCCCCCAAGCTAACTTTGCGCTTCAGTGGACTGGCCAAATGTACAACATTTCAGGCTAAGAACAGTCACTGATGAACAGTAACTAAGGCTGGGGACTTTAAAAGGTTTCAGAAATAGGGTGTACATTGTCTTTTCAAGTTCGCGTCTGTATAACTGTGTTCAAGTGACACGAAGGTTATAGGGTAGGTGAACAACAGNCTTGAGCGGCCCTCACTGTCTCGCAGAGAATGTGGCCAATTTGGCCAGCATCGGCGAGAGCAAGAAGAGGCGAGCAAGTTAATTCTTTGGTTTAATTGGTATCCTTTGTTGCAGTTTTTCTTCTTCGTGTTTAGTCAAGTAGTAGTGTTCTTCTCCCAAAGGTTGCATTGTTAATGTTGGGGTGTCGCAACATGGAGAAGGAGAACATGTATGATGATAATGCAGAACCTGTAAGAGCAAACCGGTCGTTCTGCGATGTTAACATTTTGCTGAAGTTTTTGTGTCTGTAACATCAAGTCCCAGTAAATAAATAACTCATTTTTTTTTTGTAAAAAA]
[-] EMBL CF297896 [AAACCACCCCAACCTGCACAACCTTTCCTCACCGAACCAAAATCTCACAGCTTCGCTTCTCTCTCGCCTCCCGAAGAAAATAGCTAGAGAAAAAATTCGCGGATCAAGAAGAAAAAA ]
[+] EMBL CF317969 [ ACCACCCCAACCTGCACAACCTCTCCTCACCGAACCAAAATCTCACAGCTTCGCTTCTCTCTCGCCTCCCGAAGAAAATAGCTAGAGAAAAAATTCGCGGATCAAGAAGGAAAAAGAAAAGGAACACTTGAGCTTGTTTGGACTGACAACAATGGCGGCGAAGCGGCTTCACGACGGCTACGGACAGGAGGACCAGCCCGACGACAAGCGTGTGCGCCGCATGCCGTCCTTCTCGACGGTGATCCGTGAGGCCTTGATGGTGAAGCAGATGCAGACTCTGTTCGTCGCACTGGAGC ]
[+] EMBL AK111442 [ ACCCCAACCTGCACAACCTCTCCTCACCGAACCAAAATCTCACAGCTTCGCTTCTCTCTCGCCTCCCGAAGAAAATAGCTAGAGAAAAAATTCGCGGATCAAGAAGGAAAAAGAAAAGGAACACTTGAGCTTGTTTGGACTGACAACAATGGCGGCGAAGCGGCTTCACGACGGCTACGGACAGGAGGACCAGCCCGACGACAAGCGTGTGCGCCGCATGCCGTCCTTCTCGACGGTGATCCGTGAGGCCTTGATGGTGAAGCAGATGCAGACTCTGTTCGTCGCACTGGAGCCACTTCTCCGTAGAGTGGTGCAGGAGGAGCTCCAGGCAGGTCTCGTGCGCAGCCCGCGTTACATCGAGAGGATGTCGCCTGAGACGCCGCCGGCTCAGCCGCCGATGTGGAAGCTGGCGTTCCGGTTCAAGCCGCAGCTCCCGATCTTCACCGGGAGCAAGATCGAGGACGTGAACGGCAACCCACTGGAGATCATCCTCGTCGACGTCGACACCGGCGCGCCGGCGACGATCTCGCAGCCTCTGCGCGTCGAGGTCGTCCCGGTCCTGGGCGACTTCCCGCCGGACGACCGCGAGCACTGGACGGCGGAGGAGTTCCAGCAGAGGGGCATCGTGAAGGAGCGCTCCGGCAAGCGCCCGCTCCTCACCGGCGACGTCAGCCTCACCATGCGCGACGGCTGCGTCGTCGTGAACGAGCTCCAGTTCACGGACAACTCCTCCTGGGTTCGCTGCCGCAGGTTCCGCATCGGCGTCCGCGTCGTGCCGGGCAGCTACGACGGCCCAAGAATAGGCGAGGCCATGACCGAGCCCTTCGTCGTCAGAGACCACCGCGGCGAACTGTACAGGAAGCACTACCCTCCCGTTCTTGGCGACGATGTCTGGAGGCTTGAGAAGATTGGCAAGGAGGGTGCCTTCCACAGGAAGCTGACGCAGCACAACGTCAGGAACGTGCAGGAGTTCTTGCGGCTGCTCACGGTTAAGCCGGACGAGCTGCGCGCTATCATGGGCGACGGCATGACCGATCGCATGTGGGAGGTGACGACGAGCCACGCCAAGAAGTGCGTCCCCGGCGACAAGGTGTACATGTACAGCACGCAGCACGGCACCGTCTACGTCAACTCCATCTTCGAGCTCGTGAAGGTCGAGCTCGCCGGCGTGGAGTACCAGCTGCACCAGCTGAACAGGGGTCAGAAGGCGTTCGTGCATCAGCTGCTGCTGGCGGCGTACGAGCAGCGAAACAACCTCCAAGAGGCCGACGCCATGGCGCTCCACTGCAACGACGTTCCTCTGCTGCAGAATGCAGCGGAGATAACTATCCCGGCGCTTGGAGACACGCAGCTGTGGATTCAGAACAGTCTCAACAGCCAAGAAATCGACTTCCAGGTCGACGAGATCCCCCAAGCTAACTTTGCGCTTCAGTGGACTGGCCAAATGTACAACATTTCAGGCTAAGAACAGTCACTGATGAACAGTAACTAAGGCTGGGGACTTTAAAAGGTTTCAGAAATAGGGTGTACATTGTCTTTTCAAGTTCGCGTCTGTATAACTGTGTTCAAGTGACACGAAGGTTA ]
[-] EMBL CF337429 [ ACATTTCAGGCTAAGAACAGTCACTGATGAACAGTAACTAAGGCTGGGGACTTTAAAAGGTTTCAGAAATAGGGTGTACATTGTCTTTTCAAGTTCGCGTCTGTATAACTGTGTTCAAGTGACACGAAGGTTATAGGGTAGGTGAACAACAGNCTTGAGCGGCCCTCACTGTCTCGCAGAGAATGTGGCCAATTTGGCCAGCATCGGCGAGAGCAAGAAGAGGCGAGCAAGTTAATTCTTTGGTTTAATTGGTATCCTTTGTTGCAGTTTTTCTTCTTCGTGTTTAGTCAAGTAGTAGTGTTCTTCTCCCAAAGGTTGCATTGTTAATGTTGGGGTGTCGCAACATGGAGAAGGAGAACATGTATGATGATAATGCAGAACCTGTAAGAGCAAACCGGTCGTTCTGCGATGTTAACATTTTGCTGAAGTTTTTGTGTCTGTAACATCAAGTCCCAGTAAATAAATAACTCATTTTTTTTTTGTAAAAAA]
[-] EMBL BI305921 [ CCAATTTGGCCAGCATCGGCGAGAGCAAGAAGAGGCGAGCAAGTTAATTCTTTGGTTTAATTGGTATCCTTTGTTGCAGTTTTTCTTCTTCGTGTTTAGTCAAGTAGTAGTGTTCTTCTCCCAAAGG ]
[-] EMBL BI306421 [ CCAATTTGGCCAGCATCGGCGAGAGCAAGAAGAGGCGAGCAAGTTAATTCTTTGGTTTAATTGGTATCCTTTGTTGCAGTTTTTCTTCTTCGTGTTTAGTCAAGTAGTAGTGTTCTTCTCCCAAAGG ]
[-] EMBL CB967392 [ CATCGGCGAGAGCAAGAAGAGGCGAGCAAGTTAATTCTTTGG TTAATTGGTATCCTTTGTTGCAGTTTTTCTTCTTCGTGTTTAGTCAAGTAGTAGTGTTCTTCTCCCAAAGG ]
consensusID : consensus_11062#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 67 fasta sequence
[GCACTCCTTGCTTGCTGAATCAAATCTCACAGCTTCGCTTCTCTCTCGCCTCCCGAAGAAAATAGCT]
[+] EMBL CB965987 [GCACTCCTTGCTTGCTGAATCAAATCTCACAGCTTCGCTTCTCTCTCGCCTCCCGAAGAAAATAGCT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_11062#0 AAACCACCCCAACCTGCACAACCTCTCCTCACCGAACCAAAATCTCACAGCTTCGCTTCT 60
consensus_11062#1 -----------------GCACTCCTTGCTTGCTGAATCAAA-TCTCACAGCTTCGCTTCT 42
** * * ** * *** **** ******************
consensus_11062#0 CTCTCGCCTCCCGAAGAAAATAGCTAGAGAAAAAATTCGCGGATCAAGAAGGAAAAAGAA 120
consensus_11062#1 CTCTCGCCTCCCGAAGAAAATAGCT----------------------------------- 67
*************************
consensus_11062#0 AAGGAACACTTGAGCTTGTTTGGACTGACAACAATGGCGGCGAAGCGGCTTCACGACGGC 180
consensus_11062#1 ------------------------------------------------------------
consensus_11062#0 TACGGACAGGAGGACCAGCCCGACGACAAGCGTGTGCGCCGCATGCCGTCCTTCTCGACG 240
consensus_11062#1 ------------------------------------------------------------
consensus_11062#0 GTGATCCGTGAGGCCTTGATGGTGAAGCAGATGCAGACTCTGTTCGTCGCACTGGAGCCA 300
consensus_11062#1 ------------------------------------------------------------
consensus_11062#0 CTTCTCCGTAGAGTGGTGCAGGAGGAGCTCCAGGCAGGTCTCGTGCGCAGCCCGCGTTAC 360
consensus_11062#1 ------------------------------------------------------------
consensus_11062#0 ATCGAGAGGATGTCGCCTGAGACGCCGCCGGCTCAGCCGCCGATGTGGAAGCTGGCGTTC 420
consensus_11062#1 ------------------------------------------------------------
consensus_11062#0 CGGTTCAAGCCGCAGCTCCCGATCTTCACCGGGAGCAAGATCGAGGACGTGAACGGCAAC 480
consensus_11062#1 ------------------------------------------------------------
consensus_11062#0 CCACTGGAGATCATCCTCGTCGACGTCGACACCGGCGCGCCGGCGACGATCTCGCAGCCT 540
consensus_11062#1 ------------------------------------------------------------
consensus_11062#0 CTGCGCGTCGAGGTCGTCCCGGTCCTGGGCGACTTCCCGCCGGACGACCGCGAGCACTGG 600
consensus_11062#1 ------------------------------------------------------------
consensus_11062#0 ACGGCGGAGGAGTTCCAGCAGAGGGGCATCGTGAAGGAGCGCTCCGGCAAGCGCCCGCTC 660
consensus_11062#1 ------------------------------------------------------------
consensus_11062#0 CTCACCGGCGACGTCAGCCTCACCATGCGCGACGGCTGCGTCGTCGTGAACGAGCTCCAG 720
consensus_11062#1 ------------------------------------------------------------
consensus_11062#0 TTCACGGACAACTCCTCCTGGGTTCGCTGCCGCAGGTTCCGCATCGGCGTCCGCGTCGTG 780
consensus_11062#1 ------------------------------------------------------------
consensus_11062#0 CCGGGCAGCTACGACGGCCCAAGAATAGGCGAGGCCATGACCGAGCCCTTCGTCGTCAGA 840
consensus_11062#1 ------------------------------------------------------------
consensus_11062#0 GACCACCGCGGCGAACTGTACAGGAAGCACTACCCTCCCGTTCTTGGCGACGATGTCTGG 900
consensus_11062#1 ------------------------------------------------------------
consensus_11062#0 AGGCTTGAGAAGATTGGCAAGGAGGGTGCCTTCCACAGGAAGCTGACGCAGCACAACGTC 960
consensus_11062#1 ------------------------------------------------------------
consensus_11062#0 AGGAACGTGCAGGAGTTCTTGCGGCTGCTCACGGTTAAGCCGGACGAGCTGCGCGCTATC 1020
consensus_11062#1 ------------------------------------------------------------
consensus_11062#0 ATGGGCGACGGCATGACCGATCGCATGTGGGAGGTGACGACGAGCCACGCCAAGAAGTGC 1080
consensus_11062#1 ------------------------------------------------------------
consensus_11062#0 GTCCCCGGCGACAAGGTGTACATGTACAGCACGCAGCACGGCACCGTCTACGTCAACTCC 1140
consensus_11062#1 ------------------------------------------------------------
consensus_11062#0 ATCTTCGAGCTCGTGAAGGTCGAGCTCGCCGGCGTGGAGTACCAGCTGCACCAGCTGAAC 1200
consensus_11062#1 ------------------------------------------------------------
consensus_11062#0 AGGGGTCAGAAGGCGTTCGTGCATCAGCTGCTGCTGGCGGCGTACGAGCAGCGAAACAAC 1260
consensus_11062#1 ------------------------------------------------------------
consensus_11062#0 CTCCAAGAGGCCGACGCCATGGCGCTCCACTGCAACGACGTTCCTCTGCTGCAGAATGCA 1320
consensus_11062#1 ------------------------------------------------------------
consensus_11062#0 GCGGAGATAACTATCCCGGCGCTTGGAGACACGCAGCTGTGGATTCAGAACAGTCTCAAC 1380
consensus_11062#1 ------------------------------------------------------------
consensus_11062#0 AGCCAAGAAATCGACTTCCAGGTCGACGAGATCCCCCAAGCTAACTTTGCGCTTCAGTGG 1440
consensus_11062#1 ------------------------------------------------------------
consensus_11062#0 ACTGGCCAAATGTACAACATTTCAGGCTAAGAACAGTCACTGATGAACAGTAACTAAGGC 1500
consensus_11062#1 ------------------------------------------------------------
consensus_11062#0 TGGGGACTTTAAAAGGTTTCAGAAATAGGGTGTACATTGTCTTTTCAAGTTCGCGTCTGT 1560
consensus_11062#1 ------------------------------------------------------------
consensus_11062#0 ATAACTGTGTTCAAGTGACACGAAGGTTATAGGGTAGGTGAACAACAGNCTTGAGCGGCC 1620
consensus_11062#1 ------------------------------------------------------------
consensus_11062#0 CTCACTGTCTCGCAGAGAATGTGGCCAATTTGGCCAGCATCGGCGAGAGCAAGAAGAGGC 1680
consensus_11062#1 ------------------------------------------------------------
consensus_11062#0 GAGCAAGTTAATTCTTTGGTTTAATTGGTATCCTTTGTTGCAGTTTTTCTTCTTCGTGTT 1740
consensus_11062#1 ------------------------------------------------------------
consensus_11062#0 TAGTCAAGTAGTAGTGTTCTTCTCCCAAAGGTTGCATTGTTAATGTTGGGGTGTCGCAAC 1800
consensus_11062#1 ------------------------------------------------------------
consensus_11062#0 ATGGAGAAGGAGAACATGTATGATGATAATGCAGAACCTGTAAGAGCAAACCGGTCGTTC 1860
consensus_11062#1 ------------------------------------------------------------
consensus_11062#0 TGCGATGTTAACATTTTGCTGAAGTTTTTGTGTCTGTAACATCAAGTCCCAGTAAATAAA 1920
consensus_11062#1 ------------------------------------------------------------
consensus_11062#0 TAACTCATTTTTTTTTTGTAAAAAA 1945
consensus_11062#1 -------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||