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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11073#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1707 fasta sequence
[ACACTCCAGCCTATCGAGCGGTCACTACTCACTAGCAGTTGGAATTTGGACAGCAGCAGCAGCGGTGAGCGCGGCGGCGGCGGCGGCGGCGACTTGCTCTCCTCCTCCCCACAGTCCAGTTCTTACAGGAGACGAACGCCGGCGAGCCGCCTCCGCCGCAGCTATGGCTTCCAGGACGCTCTCCGTCTCCTCCCTCGCCTCCGCCTTCGCCTCCATCCCCCGCCCCAGGCCCCCTCCTCCGCCTCCATCTCGCATCCGCGCCTCCCCTCTCTCCACCGCCGCCGCCGCCGCCAGTGACGGCGACGCCGCCGACGGGGTCGACACCGTGGAGCAGCTCCTCGTTACGAAGCCCCCCGCCTCCTCCTCCTCCTCCTCCGCGGGAAGGGGCCGGATCGACCGGCTCATGAAGCTGCAGCGTCGCGCGGACGGGGACTTCCCCCCCGGCGGGGCGGGGCGGAGGTGGTTCCCTTACCTGGACGCGTTCCGGGCGGCGGGGGGCGTGGAGCTGACTAGCCGGGAGGTGCTGGAGGTGCTGGAGCCGCACATCATGGAGGCGCGGCGGGAGCGGATCCGCCGCGCCGTCGAGAACCGGAGCTACTCCGTTTGCCTCGTCGTGGAGGGGCTCTCTGACTTCGGGAACGTCTCCGCGGCGTTCCGGTCCGCCGACGCGCTAGGCGTGCAGTCCGTGCACGTCATCTCCTGCGACAACAACAAAAGGTATAGAGACAATAGGCATGTGAGCATGGGTGCTGAGAAATGGCTTGATATCGAATTATGGAGCTCAACTGCAGAATGCTTTGATGCTTTAAAAAAGCGTGGTTATCGCATTGCAACTACTTATTTGGGAAATGATTCGGTTTGTGTGTACGACATGGATTGGTCGCAACCTACCGCTATTGTTGTGGGCAATGAACTTATGGGCATAAGTGATGATGCTTTAAAGTTGTCAGACTTGCACTGCAGTGTTCCTATGAAAGGCATGGTGGATTCTTTTAATGTATCTGTTGCAGCTGGAATCCTTATGCACCATGCTGTCTGTGATCGAATTTCCCGCATCGGTCATCATGGTGATCTCTTGCCTGAAGAAAGTAGAATATTGCTTGCGGAGTTTTATTTGCGCCACAGACAGAGCACAGCTGGCATAGTTCACGAATATGCCAAAAGAAAGGCAGGAAACTTCATGGCCAAACTTTGACAACTATCATTATAGTTACTGAAGGAGAAATATACACAACCTAG-GTATTCATTCAAAGAGATTTGCTTTGGCAATTGGAGTTTCTGGCTCTGGCATATCATTTTTGACAGAGCAGCTGGCTTTTTACGGAGAGGAACTATCAGGCTGCTTGACCATCATGGTGCCTCAAGATGATGACTTCAGAACAGAATTTTTTGACAGGACTATGATCTATCAGAGTATCAAGCTATCGCATTATCTTAACAGATGACATTACTATTTCAGTCACATTGCTTGCTACCCAAATTTGGAAGTTGATGCAAAAACTAAGATGTTGTTTTGGATGCTGACATATAAGAAAGGATCGATGCAGCTTTCTCTCCGTTCGCTAGAACCCCAGTTGATAATTTTTAGAGTTTAACTACTGCCTTTTACCGCGATGTGAGACACTGCACTCAGAACTCAACTCTCTTAGCGATTTAATGTCATGTTTTCTCTCTCGGATTGTTCACAATAACAGAGCTAGAGGGTTA]
[+] EMBL AK068136 [ACACTCCAGCCTATCGAGCGGTCACTACTCACTAGCAGTTGGAATTTGGACAGCAGCAGCAGCGGTGAGCGCGGCGGCGGCGGCGGCGGCGACTTGCTCTCCTCCTCCCCACAGTCCAGTTCTTACAGGAGACGAACGCCGGCGAGCCGCCTCCGCCGCAGCTATGGCTTCCAGGACGCTCTCCGTCTCCTCCCTCGCCTCCGCCTTCGCCTCCATCCCCCGCCCCAGGCCCCCTCCTCCGCCTCCATCTCGCATCCGCGCCTCCCCTCTCTCCACCGCCGCCGCCGCCGCCAGTGACGGCGACGCCGCCGACGGGGTCGACACCGTGGAGCAGCTCCTCGTTACGAAGCCCCCCGCCTCCTCCTCCTCCTCCTCCGCGGGAAGGGGCCGGATCGACCGGCTCATGAAGCTGCAGCGTCGCGCGGACGGGGACTTCCCCCCCGGCGGGGCGGGGCGGAGGTGGTTCCCTTACCTGGACGCGTTCCGGGCGGCGGGGGGCGTGGAGCTGACTAGCCGGGAGGTGCTGGAGGTGCTGGAGCCGCACATCATGGAGGCGCGGCGGGAGCGGATCCGCCGCGCCGTCGAGAACCGGAGCTACTCCGTTTGCCTCGTCGTGGAGGGGCTCTCTGACTTCGGGAACGTCTCCGCGGCGTTCCGGTCCGCCGACGCGCTAGGCGTGCAGTCCGTGCACGTCATCTCCTGCGACAACAACAAAAGGTATAGAGACAATAGGCATGTGAGCATGGGTGCTGAGAAATGGCTTGATATCGAATTATGGAGCTCAACTGCAGAATGCTTTGATGCTTTAAAAAAGCGTGGTTATCGCATTGCAACTACTTATTTGGGAAATGATTCGGTTTGTGTGTACGACATGGATTGGTCGCAACCTACCGCTATTGTTGTGGGCAATGAACTTATGGGCATAAGTGATGATGCTTTAAAGTTGTCAGACTTGCACTGCAGTGTTCCTATGAAAGGCATGGTGGATTCTTTTAATGTATCTGTTGCAGCTGGAATCCTTATGCACCATGCTGTCTGTGATCGAATTTCCCGCATCGGTCATCATGGTGATCTCTTGCCTGAAGAAAGTAGAATATTGCTTGCGGAGTTTTATTTGCGCCACAGACAGAGCACAGCTGGCATAGTTCACGAATATGCCAAAAGAAAGGCAGGAAACTTCATGGCCAAACTTTGACAACTATCATTATAGTTACTGAAGGAGAAATATACACAACCTAG GTATTCATTCAAAGAGATTTGCTTTGGCAATTGGAGTTTCTGGCTCTGGCATATCATTTTTGACAGAGCAGCTGGCTTTTTACGGAGAGGAACTATCAGGCTGCTTGACCATCATGGTGCCTCAAGATGATGACTTCAGAACAGAATTTTTTGACAGGACTATGATCTATCAGAGTATCAAGCTATCGCATTATCTTAACAGATGACATTACTATTTCAGTCACATTGCTTGCTACCCAAATTTGGAAGTTGATGCAAAAACTAAGATGTTGTTTTGGATGCTGACATATAAGAAAGGATCGATGCAGCTTTCTCTCCGTTCGCTAGAACCCCAGTTGATAATTTTTAGAGTTTAACTACTGCCTTTTACCGCGATGTGAGACACTGCACTCAGAACTCAACTCTCTTAGCGATTTAATGTCATGTTTTCTCTCTCGGATTGTTCACAATAACAGAGCTAGAGGGTTA]
[+] EMBL CB657703 [ GCGGACGGGGACTTCCCCCCCGGCGGGGCGGGGCGGAGGTGGTTCCCTTACCTGGACGCGTTCCGGGCGGCGGGGGGCGTGGAGCTGACTAGCCGGGAGGTGCTGGAGGTGCTGGAGCCGCACATCATGGAGGCGCGGCGGGAGCGGATCCGCCGCGCCGTCGAGAACCGGAGCTACTCCGTTTGCCTCGTCGTGGAGGGGCTCTCTGACTTCGGGAACGTCTCCGCGGCGTTCCGGTCCGCCGACGCGCTAGGCGTGCAGTCCGTGCACGTCATCTCCTGCGACAACAACAAAAGGTATAGAGACAATAGGCATGTGAGCATGGGTGCTGAGAAATGGCTTGATATCGAATTATGGAGCTCAACTGCAGAATGCTTTGATGCTTTAAAAAAGCGTGGTTATCGCATTGCAACTACTTATTTGGGAAATGATTCGGTTTGTGTGTACGACATGGATTGGTCGCAACCTACCGCTATTGTTGTGGGCAATGAACTTATGGGCATAAGTGATGATGCTTTAAAGTTGTCAGACTTGCACTGCAGTGTTCCTATGAAAGGCATGGTGGATTCTTTTAATGTATCTGTTGCAGCTGGAATCCTTATGCACCATGCTGTCTGTGATCGAATTTCCCGCATCGGTCATCATGGTGATCTCTTGCCTGAAGAAAGTAGAATATTGCTTGCGGAGTTTTATTTGCGCCACAGACAGAGCACAGCTGGCATAGTTCACGAATATGCCAAAAGAAAGGCAGGAAACTTCATGGCCAAACTTTGACca ]
[+] EMBL CF303081 [ CGGAGCTACTCCGTTTGCCTCGTCGTGGAGGGGCTCTCTGACTTCGGGAACGTCTCCGCGGCGTTCCGGTCCGCCGACGCGCTAGGCGTGCAGTCCGTGCACGTCATCTCCTGCGACAACAACAAAAGGTATAGAGACAATAGGCATGTGAGCATGGGTGCTGAGAAATGGCTTGATATCGAATTATGGAGCTCAACTGCAGAATGCTTTGATGCTTTAAAAAAGCGTGGTTATCGCATTGCAACTACTTATTTGGGAAATGATTCGGTTTGTGTGTACGACATGGATTGGTCGCAACCTACCGCTATTGTTGTGGGCAATGAACTTATGGGCATAAGTGATGATGCTTTAAAGTTGTCAGACTTGCACTGCAGTGTTCCTATGAAAGGCATGGTGGATTCTTTTAATGTATCTGTTGCAGCTGGAATCCTTATGCACCATGCTGTCTGTGATCGAATTTCCCGCATCGGTCATCATGGTGATC ]
[+] EMBL CF335161 [ CTTTAAAAAAGCGTGGTTATCGCATTGCAACTACTTATTTGGGAAATGATTCGGTTTGTGTGTACGACATGGATTGGTCGCAACCTACCGCTATTGTTGTGGGCAATGAACTTATGGGCATAAGTGATGATGCTTTAAAGTTGTCAGACTTGCACTGCAGTGTTCCTATGAAAGGCATGGTGGATTCTTTTAATGTATCTGTTGCAGCTGGAATCCTTATGCACCATGCTGTCTGTGATCGAATTTCCCGCATCGGTCATCATGGTGATCTCTTGCCTGAAGAAAGTAGAATATTGCTTGCGGAGTTTTATTTGCGCCACAGACAGAGCACAGCTGGCATAGTTCACGAATATGCCAAAAGAAAGGCAGGAAACTTCATGGCCAAACTTTGACAACTATCATTATAGTTACTGAAGGAGAAATA ]
[-] EMBL CB657704 [ CTTATTTGGGAAATGATTCGGTTTGTGTGTACGACATGGATTGGTCGCAACCTACCGCTATTGTTGTGGGCAATGAACTTATGGGCATAAGTGATGATGCTTTAAAGTTGTCAGACTTGCACTGCAGTGTTCCTATGAAAGGCATGGTGGATTCTTTTAATGTATCTGTTGCAGCTGGAATCCTTATGCACCATGCTGTCTGTGATGGAATTTCCCGCATCGGTCATCATGGTGATTTCTTGCCTGAAGAAAGTAGAATATTGCTTGCGGAGTTTTATTTGCGCCACAGACAGAGCACAGCTGGCATAGTTCACGAATATGCCAAAAGAAAGGCAGGAAACTTCATGGCCAAACTTTGACAACTATCATTATAGTTACTGAAGGAGAAATATACCCACCCTAG GTATTCATTCAAAGAGATTTGCTTTGGCAATTGGAGTTTCTGGTTTTGGCATATCATTTTTGACAGAGCAGCTGGCTTTTTACGGAGAGGAACTATCAGGCTGCTTGACCATCATGGTGCCTCAAGATGATGACTTCAGAACAGAATTTTTTGCCAGGACTATGATTTATCAGAGTATCAAGCTATCGCATTATCTTAACAGATGACATTACTATTTCAGTCACATTGCTTGCTACCCAAATTTGGAAGTTGATGCAAAAACTAAGATGTTGTTTTGGATGCTGACATATAAGAAAGGATGGATGCAG ]
[+] EMBL OSC29831 [ TTAATGTATCTGTTGCAGCTGGAATCCTTATGCACCATGCTGTCTGTGATCGAATTTCCCGCATCGGTCATCATGGTGATCTCTTGCCTGAAGAAAGTAGAATATTGCTTGCGGAGTTTTATTTGCGCCACAGACAGAGCACAGCTGGCATAGTTCACGAATATGCCAAAAGAAAGGCAGGAAACTTCATGGCCAAACTTTGACAACTATCATTATAGTTACTGAAGGAGAAATATACACAACCTAG GTATTCATTCAAAGAGATTTGCTTTGGCAATTGGAGTTTCTGGCTCTGGCATATCATTTTTGACAGAGCAGCTGGCTTTTTACGGAGAGGAACTATCAGGCTGCTTGACCATCATGGTGCCTCAAGATGATGACTTCAGAACAGAA ]
[-] EMBL CF335162 [ CGGTCATCATGGTGATCTCTTGCCTGAAGAAAGTAGAATATTGCTTGCGGAGTTTTATTTGCGCCACAGACAGAGCACAGCTGGCATAGTTCACGAATATGCCAAAAGAAAGGCAGGAAACTTCATGGCCAAACTTTGACAACTATCATTATAGTTACTGAAGGAGAAATATACACAACCTAGTGTATTCATTCAAAGAGATTTGCTTTGGCAATTGGAGTTTCTGGCTCTGGCATATCATTTTTGACAGAGCAGCTGGCTTTTTACGGAGAGGAACTATCAGGCTGCTTGACCATCATGGTGCCTCAAGATGATGACTTCAGAACAGAATTTTTTGACAGGACTATGATCTATCAGAGTATCAAGCTATCGCATTATCTTAACAGATGACATTACTATTTCAGTCACATTGCTTGCTACCCAAATTTGGAAGTTGATGCAAAAACTAAGGTGTTGTTTTGGATGCTGACATATAAGAAAGGATCGATGCAGCTTTCTCTCaaaaaaaa ]
consensusID : consensus_11073#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 203 fasta sequence
[TGTGTTTGAACGAGGACGTAGTGAGTCGTAGTCAGAGGTAGTCAAGCGTATGTCGCAGTTAGTCGTGTACAGAGTGACATTACGTAGTGTGTCAGGTCACATTGCTTGCTACCCAAATTTGGAAGTTGATGCAAAAACTAAGATGTTGTTTTGGATGCTGACATATAAGAAAGGATCGATGCAGCTTTCTCTCAAAAAAAAAA]
[+] EMBL BQ907874 [TGTGTTTGAACGAGGACGTAGTGAGTCGTAGTCAGAGGTAGTCAAGCGTATGTCGCAGTTAGTCGTGTACAGAGTGACATTACGTAGTGTGTCAGGTCACATTGCTTGCTACCCAAATTTGGAAGTTGATGCAAAAACTAAGATGTTGTTTTGGATGCTGACATATAAGAAAGGATCGATGCAGCTTTCTCTCAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_11073#0 ACACTCCAGCCTATCGAGCGGTCACTACTCACTAGCAGTTGGAATTTGGACAGCAGCAGC 60
consensus_11073#1 ------------------------------------------------------------
consensus_11073#0 AGCGGTGAGCGCGGCGGCGGCGGCGGCGGCGACTTGCTCTCCTCCTCCCCACAGTCCAGT 120
consensus_11073#1 ------------------------------------------------------------
consensus_11073#0 TCTTACAGGAGACGAACGCCGGCGAGCCGCCTCCGCCGCAGCTATGGCTTCCAGGACGCT 180
consensus_11073#1 ------------------------------------------------------------
consensus_11073#0 CTCCGTCTCCTCCCTCGCCTCCGCCTTCGCCTCCATCCCCCGCCCCAGGCCCCCTCCTCC 240
consensus_11073#1 ------------------------------------------------------------
consensus_11073#0 GCCTCCATCTCGCATCCGCGCCTCCCCTCTCTCCACCGCCGCCGCCGCCGCCAGTGACGG 300
consensus_11073#1 ------------------------------------------------------------
consensus_11073#0 CGACGCCGCCGACGGGGTCGACACCGTGGAGCAGCTCCTCGTTACGAAGCCCCCCGCCTC 360
consensus_11073#1 ------------------------------------------------------------
consensus_11073#0 CTCCTCCTCCTCCTCCGCGGGAAGGGGCCGGATCGACCGGCTCATGAAGCTGCAGCGTCG 420
consensus_11073#1 ------------------------------------------------------------
consensus_11073#0 CGCGGACGGGGACTTCCCCCCCGGCGGGGCGGGGCGGAGGTGGTTCCCTTACCTGGACGC 480
consensus_11073#1 ------------------------------------------------------------
consensus_11073#0 GTTCCGGGCGGCGGGGGGCGTGGAGCTGACTAGCCGGGAGGTGCTGGAGGTGCTGGAGCC 540
consensus_11073#1 ------------------------------------------------------------
consensus_11073#0 GCACATCATGGAGGCGCGGCGGGAGCGGATCCGCCGCGCCGTCGAGAACCGGAGCTACTC 600
consensus_11073#1 ------------------------------------------------------------
consensus_11073#0 CGTTTGCCTCGTCGTGGAGGGGCTCTCTGACTTCGGGAACGTCTCCGCGGCGTTCCGGTC 660
consensus_11073#1 ------------------------------------------------------------
consensus_11073#0 CGCCGACGCGCTAGGCGTGCAGTCCGTGCACGTCATCTCCTGCGACAACAACAAAAGGTA 720
consensus_11073#1 ------------------------------------------------------------
consensus_11073#0 TAGAGACAATAGGCATGTGAGCATGGGTGCTGAGAAATGGCTTGATATCGAATTATGGAG 780
consensus_11073#1 ------------------------------------------------------------
consensus_11073#0 CTCAACTGCAGAATGCTTTGATGCTTTAAAAAAGCGTGGTTATCGCATTGCAACTACTTA 840
consensus_11073#1 ------------------------------------------------------------
consensus_11073#0 TTTGGGAAATGATTCGGTTTGTGTGTACGACATGGATTGGTCGCAACCTACCGCTATTGT 900
consensus_11073#1 ------------------------------------------------------------
consensus_11073#0 TGTGGGCAATGAACTTATGGGCATAAGTGATGATGCTTTAAAGTTGTCAGACTTGCACTG 960
consensus_11073#1 ------------------------------------------------------------
consensus_11073#0 CAGTGTTCCTATGAAAGGCATGGTGGATTCTTTTAATGTATCTGTTGCAGCTGGAATCCT 1020
consensus_11073#1 ------------------------------------------------------------
consensus_11073#0 TATGCACCATGCTGTCTGTGATCGAATTTCCCGCATCGGTCATCATGGTGATCTCTTGCC 1080
consensus_11073#1 ------------------------------------------------------------
consensus_11073#0 TGAAGAAAGTAGAATATTGCTTGCGGAGTTTTATTTGCGCCACAGACAGAGCACAGCTGG 1140
consensus_11073#1 ------------------------------------------------------------
consensus_11073#0 CATAGTTCACGAATATGCCAAAAGAAAGGCAGGAAACTTCATGGCCAAACTTTGACAACT 1200
consensus_11073#1 ------------------------------------------------------------
consensus_11073#0 ATCATTATAGTTACTGAAGGAGAAATATACACAACCTAGGTATTCATTCAAAGAGATTTG 1260
consensus_11073#1 ------------------------------------------------------------
consensus_11073#0 CTTTGGCAATTGGAGTTTCTGGCTCTGGCATATCATTTTTGACAGAGCAGCTGGCTTTTT 1320
consensus_11073#1 ------------------------------------------------------------
consensus_11073#0 ACGGAGAGGAACTATCAGGCTGCTTGACCATCATGGTGCCTCAAGATGATGACTTCAGAA 1380
consensus_11073#1 -------------------------------------------------TGTGTTTGAAC 11
** ** *
consensus_11073#0 CAGAATTTTTTGA-CAGGACTATGATCTATCAGAGTATCAAGCTATCGCATTATCTTAAC 1439
consensus_11073#1 GAGGACGTAGTGAGTCGTAGTCAGAGGTAGTCAAGCGT-ATGTCGCAGTTAGTCGTGTAC 70
** * * *** * * * ** ** ** * * * * * **
consensus_11073#0 AGA-TGACATTAC----TATTTCAG-TCACATTGCTTGCTACCCAAATTTGGAAGTTGAT 1493
consensus_11073#1 AGAGTGACATTACGTAGTGTGTCAGGTCACATTGCTTGCTACCCAAATTTGGAAGTTGAT 130
*** ********* * * **** **********************************
consensus_11073#0 GCAAAAACTAAGATGTTGTTTTGGATGCTGACATATAAGAAAGGATCGATGCAGCTTTCT 1553
consensus_11073#1 GCAAAAACTAAGATGTTGTTTTGGATGCTGACATATAAGAAAGGATCGATGCAGCTTTCT 190
************************************************************
consensus_11073#0 CTCCGTTCGCTAGAACCCCAGTTGATAATTTTTAGAGTTTAACTACTGCCTTTTACCGCG 1613
consensus_11073#1 CTCAAAAAAAAAA----------------------------------------------- 203
*** *
consensus_11073#0 ATGTGAGACACTGCACTCAGAACTCAACTCTCTTAGCGATTTAATGTCATGTTTTCTCTC 1673
consensus_11073#1 ------------------------------------------------------------
consensus_11073#0 TCGGATTGTTCACAATAACAGAGCTAGAGGGTTA 1707
consensus_11073#1 ----------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||