cluster # 11081

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Oryza sativa
cluster # 11081 cluster # 11081 Sequences # 8 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_11081#0 length = 778 sequences # 2

consensus_11081#1 length = 673 sequences # 6

consensusID : consensus_11081#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 778
fasta sequence

                              [GAGATCGAAGCGAAAAAAAACAGAGCAAAATCGTCCCAGCGCGAGCGAATCAGAAGAGCAACAACACAACTCGATCGTTCATCAGCGGAGAGCTTGATTTGATTTGATCGGAAGAGAAGAAAGATGGCGGGCAACAAGGGAGAGGGCCCTGCGATCGGCATCGACCTCGGCACGACCTACTCGTGCGTCGGCGTGTGGCAGCATGACAGGGTGGAGATCATCGCCAACGACCAGGGCAACCGCACCACGCCGTCGTACGTGGCCTTCACCGACACCGAGAGGCTCATCGGCGACGCCGCCAAGAACCAGGTCGCCATGAACCCCACCAACACCGTCTTTGATGCAAAGCGGCTGATCGGG-CGGCGC-TTCTCGGA-CCCGTCGGTGCATGCGGACATG-AAGATGTGGCCTGTCAAGGTGGTGCCTGGCCCATGCGATCAGCCGTGATCGTGGTGACGTACTAGGGCGATGAGAAGAGATTCTCGGTGGAGGAATCTGGTCATGGTGCTACATGATGAAGAGATCGCGAGGCCTTCTCACACACCATCATGACGCCGCATAACGTACCGGCTACTTATCATTGCACGCAGTCATCAAGACCCGGGTATCTCGGCTTACGTTGCTCTTATTACGGCCTAGTGGCTTATGGCTCGGCTGACAAAGGGCTCTCTCGGAAAGAATGCCTATTTACCTGTTGGGATTTAGTGTAATCTGACTTTGAGGGCCTCAAGTAGTGTTGCGAGTACCCGTGTGGATGGTGTTACGAGGGGACATTGGCGGT]

[+] EMBL AW155003             [GAGATCGAAGCGAAAAAAAACAGAGCAAAATCGTCCCAGCGCGAGCGAATCAGAAGAGCAACAACACAACTCGATCGTTCATCAGCGGAGAGCTTGATTTGATTTGATCGGAAGAGAAGAAAGATGGCGGGCAACAAGGGAGAGGGCCCTGCGATCGGCATCGACCTCGGCACGACCTACTCGTGCGTCGGCGTGTGGCAGCATGACAGGGTGGAGATCATCGCCAACGACCAGGGCAACCGCACCACGCCGTCGTACGTGGCCTTCACCGACACCGAGAGGCTCATCGGCGACGCCGCCAAGAACCAGGTCGCCATGAACCCCACCAACACCGTCTTTGATGCAAAGCGGCTGATCGGG CGGCGC TTCTCGGA CCCGTCGGTGCATGCGGACATG AAGATGTGGCCTGTCAAGGTGGTGCCTGGCCCATGCGATCAGCCGTGATCGTGGTGACGTACTAGGGCGATGAGAAGAGATTCTCGGTGGAGGAATCTGGTCATGGTGCTACATGATGAAGAGATCGCGAGGCCTTCTCACACACCATCATGACGCCGCATAACGTACCGGCTACTTATCATTGCACGCAGTCATCAAGACCCGGGTATCTCGGCTTACGTTGCTCTTATTACGGCCTAGTGGCTTATGGCTCGGCTGACAAAGGGCTCTCTCGGAAAGAATGCCTATTTACCTGTTGGGATTTAGTGTAATCTGACTTTGAGGGCCTCAAGTAGTGTTGCGAGTACCCGTGTGGATGGTGTTACGAGGGGACATTGGCGGT]
[+] EMBL AU069411             [               AAAAACAGAGCAAAATCGTCCCAGCGCGAGCGAATCAGAAGAGCAACAACACAACTCGATCGTTCATCAGCGGAGAGCTTGATTTGATTTGATCGGAAGAGAAGAAAGATGGCGGGCAACAAGGGAGAGGGCCCTGCGATCGGCATCGACCTCGGCACGACCTACTCGTGCGTCGGCGTGTGGCAGCATGACAGGGTGGAGATCATCGCCAACGACCAGGGCAACCGCACCACGCCGTCGTACGTGGCCTT ACCGACACCGAGAGGCTCATCGGCGACGCCGNCAAGAACCAGGTCGCCATGAACCCCACCAACACCGTCTTTGATGCAAAGCGGCTGATCGGGCCGGCGCTTTTTCGGACCCCGTCGGTGCAAGCGGACATGAAAGATGTGGCC GTCAANGTGGTGCt                                                                                                                                                                                                                                                                                                                                                                    ]




>consensus_11081#0
GAGATCGAAGCGAAAAAAAACAGAGCAAAATCGTCCCAGCGCGAGCGAATCAGAAGAGCA
ACAACACAACTCGATCGTTCATCAGCGGAGAGCTTGATTTGATTTGATCGGAAGAGAAGA
AAGATGGCGGGCAACAAGGGAGAGGGCCCTGCGATCGGCATCGACCTCGGCACGACCTAC
TCGTGCGTCGGCGTGTGGCAGCATGACAGGGTGGAGATCATCGCCAACGACCAGGGCAAC
CGCACCACGCCGTCGTACGTGGCCTTCACCGACACCGAGAGGCTCATCGGCGACGCCGCC
AAGAACCAGGTCGCCATGAACCCCACCAACACCGTCTTTGATGCAAAGCGGCTGATCGGG
CGGCGCTTCTCGGACCCGTCGGTGCATGCGGACATGAAGATGTGGCCTGTCAAGGTGGTG
CCTGGCCCATGCGATCAGCCGTGATCGTGGTGACGTACTAGGGCGATGAGAAGAGATTCT
CGGTGGAGGAATCTGGTCATGGTGCTACATGATGAAGAGATCGCGAGGCCTTCTCACACA
CCATCATGACGCCGCATAACGTACCGGCTACTTATCATTGCACGCAGTCATCAAGACCCG
GGTATCTCGGCTTACGTTGCTCTTATTACGGCCTAGTGGCTTATGGCTCGGCTGACAAAG
GGCTCTCTCGGAAAGAATGCCTATTTACCTGTTGGGATTTAGTGTAATCTGACTTTGAGG
GCCTCAAGTAGTGTTGCGAGTACCCGTGTGGATGGTGTTACGAGGGGACATTGGCGGT

consensusID : consensus_11081#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 673
fasta sequence

                              [AAAAAAAACAGAGCAAAATCGTCCCAGCGCGA-CG-NA-TCAGAAGAGCAACAACACAACTCGATCGTTCATCAGCGGAGAGCTTGATTTGATTTGATCGGAAGAGAAGAAAGATGGCGGGCAACAAGGGAGAGGGCCCTGCGATCGGCATCGACCTCGGCACGACCTACTCGTGCGTCGGCGTGTGGCAGCATGACAGGGTGGAGATCATCGCCAACGACCAGGGCAACCGCACCACGCCGTCGTACGTGGCCTTCACC-GACACCGAGAGGCTCATCGGCGACGCCGCCAAGAACCAGGTCGCCATGAACCCCACCAACACCGTCTTTGATGCAAAGCGGC-TGATCGGGCGGCGCTTCTCGGACCCGTCGGTGCAGGCGGACATGAAGATGTGGCCGTTCAAGG-TGGTGCC-TGGCCCAGCCGAC-AAGCCGATGATCGTGGTGACGTACAAGGGCGAGGAGAAGAAGTTCTCGGCGGAGGAGATCTCGTCCATGGTGCT-ACCAAGATGAAGGAGATCGCCGAGGCCTTCCTCAGCACCACCATCAAGAACGCCGTCATCACCGTCCCGGCCTACTTCAACGACTCCCAACGCCAGGCCACCAAGGACGCCGGCGTCATCTCCGGACTCAACGTCATGCGCATCATCAACGAGCCCACCGCCGGCCGCCATCGCNTA]

[+] EMBL AU069550             [AAAAAAAACAGAGCAAAATCGTCCCAGCGCGA  G NANTCAGAAGAGCAACAACACAACTCGATCGTTCATCAGCGGAGAGCTTGATTTGATTTGATCGGAAGAGAAGAAAGATGGCGGGCAACAAGGGAGAGGGCCCTGCGATCGGCATCGACCTCGGCACGACCTACTCGTGCGTCGGCGTGTGGCAGCATGACAGGGTGGAGATCATCGCCAACGACCAGGGCAACCGCACCACGCCGTCGTACGTGGCCTTCACCNGACACCGAGAGGCTCATCGGCGACGCC CAAAGAACCAGGTCGCCATGAACCCCACCAACACCGTCTTTGATGCAAAG GGC TTATCGGGCGGCGTTTTTCGGACCCGTCGGTGCAGGCGGACATTAAGATGTGGCCGTTNAAGG TTGTTCCTTGGCCCAGCCGACAAAGCCGATNATCGTGGTTACGT                                                                                                                                                                                                                                      ]
[+] EMBL AU162017             [AAAAAAAACAGAGCAAAATCGTCCCAGCGCGAGCG AA TCAGAAGAGCAACAACACAACTCGATCGTTCATCAGCGGAGAGCTTGATTTGATTTGATCGGAAGAGAAGAAAGATGGCGGGCAACAAGGGAGAGGGCCCTGCGATCGGCATCGACCTCGGCACGACCTACTCGTGCGTCGGCGTGTGGCAGCATGACAGGGTGGAGATCATCGCCAACGACCAGGGCAACCGCACCACGCCGTCGTACGTGGCCTTCACC GACACCGAGAGGCTCATCGGCGACGCCGCCAAGAACCAGGTCGCCATGAACCCCACCAACACCGTCTTTGATGCAAAGCGGC TGATCGGGCGGCGCTTCTCGGACCCGTCGGTGCAGGCGGACATGAAGATGTGGCCGTTCAAGG TGGTGCC TGGCCCACCCGAC AAGCCGATGATCGTGGT                                                                                                                                                                                                                                           ]
[+] EMBL AU069365             [AAAAAAAACAGAGCAAAATCGTCCCAGCGCGA NG TA TCAGAAGAGCAACAACACAACTCGATCGTTCATCAGCGNAGAGCTTNATTTGATTTGATCGGAAGAGAAGAAAGATGGCGGGCAACAAGGGAGAGGGCCCTGCGATCGGCATCGACCTCGGCACGACCTACTCGTGCGTCGNCGTGTGGCAGCATGACAGGGTGGAGATCATCGCCAACGACCAGGGCAACCGCACCACGCCGTCGTACGTAGCCTTCACC GACACCGAGAGGCTCATCGNCGACG CGNCAAGAACCAGGTCGNCATGAACCCCACCAACANCGTCTTTGATGCAAAGCGGCTTGATCGNGCGGCGGTTCTCGGACCCGTCGGTGCAGGCGGACATGAAGATGTGGNCGTTCAAGGTTGGTG C TGGCCCAGCCGAC AAGCCGTTG TCGTGGTGA                                                                                                                                                                                                                                         ]
[+] EMBL AU162015             [  AAAAAACAGAGCAAAATCGTCCCAGCGCGAGCG AA TCAGAAGAGCAACAACACAACTCGATCGTTCATCAGCGGAGAGCTTGATTTGATTTGATCGGAAGAGAAGAAAGATGGCGGGCAACAAGGGAGAGGGCCCTGCGATCGGCATCGACCTCGGCACGACCTACTCGTGCGTCGGCGTGTGGCAGCATGACAGGGTGGAGATCATCGCCAACGACCAGGGCAACCGCACCACGCCGTCGTACGTGGCCTTCACC GACACCGAGAGGCTCATCGGCGACGCCGCCAAGAACCAGGTCGCCATGAACCCCACCAACACCGTCTTTGATGCAAAGCGGC TGATCGGGCGGCGCTTCTCGGACCCGTCGGTGCAGGCGGACATGAAGATGTGGCCG TCAAGG TGGTGCC TGG CCA CCGAC AAGCCGATGATCGTGGTGACGTACAAGGGCGAGGAGAAGAAGTTCTCGGCGGAGGAGATCTCGTCCATGGTGCT ACCAAGATGAAGG                                                                                                                                                                    ]
[+] EMBL AU161264             [   AAAAACAGAGCAAAATCGTCCCAGCGCGA CGANA TCAGAAGAGCAACAACACAACTCGATCGTTCATCAGCGGAGAGCTTGATTTGATTTGATCGGAAGAGAAGAAAGATGGCGGGCAACAAGGGAGAGGGCCCTGCGATCGGCATCGACCTCGGCACGACCTACTCGTGCGTCGGCGTGTGGCAGCATGACAGGGTGGAGATCATCGCCAACGACCAGGGCAACCGCACCACGCCGTCGTACGTGGCCTTCACC GACACCGAGAGGCTCATCGGCGACG CGCCAAGAACCAGGTCGCCATGAACCCCACCAACACCGTCTTTGATGCAAAGCGGC TGATCGGGCGGCG TTTTCGGACCCGTCGGTGCAGGCGGACATGAA                                                                                                                                                                                                                                                                                                    ]
[+] EMBL AU069308             [              AAAATCGTCCCAGCGCGA NG NA TCAGAAGAGCAACAACACAACTCGATCGTTCATCAGCGGAGAGCTTGATTTGATTTGATCGGAAGAGAAGAAAGATGGCGGGCAACAAGGGAGAGGGCCCTGCGATCGGCATCGACCTCGGCACGACCTACTCGTGCGTCGGCGTGTGGCAGCATGACAGGGTGGAGATCATCGCCAACGACCAGGGCAACCGCACCACGCCGTCGTACGTGGCCTTCACC GACACCGAGAGGCTCATCGGCGACGCCGCCAAGAACCAGGTCGCCATGAACCCCACCAACACCGTCTTTGATGCAAAGCGGC TGATCGGGCGGCGCTTCTCGGACCCGTCGGTGCAGGCGGACATGAAGATGTGGCCGTTCAAGG TGGTGCC TGGCCCAGCCGAC AAGCCGATGATCGTGGTGACGTACAAGGGCGAGGAGAAGAAGTTCTCGGCGGAGGAGATCTCGTCCATGGTGCTCACCAAGATGAAGGAGATCGCCGAGGCCTTCCTCAGCACCACCATCAAGAACGCCGTCATCACCGTCCCGGCCTACTTCAACGACTCCCAACGCCAGGCCACCAAGGACGCCGGCGTCATCTCCGGACTCAACGTCATGCGCATCATCAACGAGCCCACCGCCGGCCGCCATCGCNTA]




>consensus_11081#1
AAAAAAAACAGAGCAAAATCGTCCCAGCGCGACGNATCAGAAGAGCAACAACACAACTCG
ATCGTTCATCAGCGGAGAGCTTGATTTGATTTGATCGGAAGAGAAGAAAGATGGCGGGCA
ACAAGGGAGAGGGCCCTGCGATCGGCATCGACCTCGGCACGACCTACTCGTGCGTCGGCG
TGTGGCAGCATGACAGGGTGGAGATCATCGCCAACGACCAGGGCAACCGCACCACGCCGT
CGTACGTGGCCTTCACCGACACCGAGAGGCTCATCGGCGACGCCGCCAAGAACCAGGTCG
CCATGAACCCCACCAACACCGTCTTTGATGCAAAGCGGCTGATCGGGCGGCGCTTCTCGG
ACCCGTCGGTGCAGGCGGACATGAAGATGTGGCCGTTCAAGGTGGTGCCTGGCCCAGCCG
ACAAGCCGATGATCGTGGTGACGTACAAGGGCGAGGAGAAGAAGTTCTCGGCGGAGGAGA
TCTCGTCCATGGTGCTACCAAGATGAAGGAGATCGCCGAGGCCTTCCTCAGCACCACCAT
CAAGAACGCCGTCATCACCGTCCCGGCCTACTTCAACGACTCCCAACGCCAGGCCACCAA
GGACGCCGGCGTCATCTCCGGACTCAACGTCATGCGCATCATCAACGAGCCCACCGCCGG
CCGCCATCGCNTA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_11081#0      GAGATCGAAGCGAAAAAAAACAGAGCAAAATCGTCCCAGCGCGAGCGAATCAGAAGAGCA 60
consensus_11081#1      ------------AAAAAAAACAGAGCAAAATCGTCCCAGCGCGA-CGNATCAGAAGAGCA 47
                                   ******************************** ** ************

consensus_11081#0      ACAACACAACTCGATCGTTCATCAGCGGAGAGCTTGATTTGATTTGATCGGAAGAGAAGA 120
consensus_11081#1      ACAACACAACTCGATCGTTCATCAGCGGAGAGCTTGATTTGATTTGATCGGAAGAGAAGA 107
                       ************************************************************

consensus_11081#0      AAGATGGCGGGCAACAAGGGAGAGGGCCCTGCGATCGGCATCGACCTCGGCACGACCTAC 180
consensus_11081#1      AAGATGGCGGGCAACAAGGGAGAGGGCCCTGCGATCGGCATCGACCTCGGCACGACCTAC 167
                       ************************************************************

consensus_11081#0      TCGTGCGTCGGCGTGTGGCAGCATGACAGGGTGGAGATCATCGCCAACGACCAGGGCAAC 240
consensus_11081#1      TCGTGCGTCGGCGTGTGGCAGCATGACAGGGTGGAGATCATCGCCAACGACCAGGGCAAC 227
                       ************************************************************

consensus_11081#0      CGCACCACGCCGTCGTACGTGGCCTTCACCGACACCGAGAGGCTCATCGGCGACGCCGCC 300
consensus_11081#1      CGCACCACGCCGTCGTACGTGGCCTTCACCGACACCGAGAGGCTCATCGGCGACGCCGCC 287
                       ************************************************************

consensus_11081#0      AAGAACCAGGTCGCCATGAACCCCACCAACACCGTCTTTGATGCAAAGCGGCTGATCGGG 360
consensus_11081#1      AAGAACCAGGTCGCCATGAACCCCACCAACACCGTCTTTGATGCAAAGCGGCTGATCGGG 347
                       ************************************************************

consensus_11081#0      CGGCGCTTCTCGGACCCGTCGGTGCATGCGGACATGAAGATGTGGCCTGTCAAGGTGGTG 420
consensus_11081#1      CGGCGCTTCTCGGACCCGTCGGTGCAGGCGGACATGAAGATGTGGCCGTTCAAGGTGGTG 407
                       ************************** ********************  ***********

consensus_11081#0      CCTGGCCCATGCGATCAGCCG-TGATCGTGGTGACGTACTAGGGCGATGAGAAGAGATTC 479
consensus_11081#1      CCTGGCCCAGCCGACAAGCCGATGATCGTGGTGACGTACAAGGGCGAGGAGAAGAAGTTC 467
                       *********  ***  ***** ***************** ******* *******  ***

consensus_11081#0      TCGGTGGAGGA-ATCTGGTC-ATGGTGCTAC-ATGATGAAG-AGATCGC-GAGGCCTTCT 534
consensus_11081#1      TCGGCGGAGGAGATCTCGTCCATGGTGCTACCAAGATGAAGGAGATCGCCGAGGCCTTCC 527
                       **** ****** **** *** ********** * ******* ******* ********* 

consensus_11081#0      CACACACCATCATGACGCCGCATAACGTACCGGCTACTTATCATTGCACGCAGTCATCAA 594
consensus_11081#1      TCAGCACCACCATCAAGAACGCCGTCATCACCGTCCCGGCCTACTTCA-ACGACTCCCAA 586
                           ***** *** * *        * *  * *   *     * * **  *      ***

consensus_11081#0      GACCCGGGTATCTCGGCTTACGTTGCTCTTATTACGGCCTAGTGGCTTATGGCTCGGCTG 654
consensus_11081#1      CGCCAGGCCACCAAGGACGCCGGCG-TCATCTCCGGACTCAACGTCATGCGCATCATC-A 644
                         ** **  * *  **    **  * ** * *   * *  *  * * *  *  **  *  

consensus_11081#0      ACAAAGGGCTCTCTCGGAAAGAATGCCTATTTACCTGTTGGGATTTAGTGTAATCTGACT 714
consensus_11081#1      ACGAGCCCACCGCCGGCCGCCATCGCNTA------------------------------- 673
                       ** *      * *  *     *  ** **                               

consensus_11081#0      TTGAGGGCCTCAAGTAGTGTTGCGAGTACCCGTGTGGATGGTGTTACGAGGGGACATTGG 774
consensus_11081#1      ------------------------------------------------------------
                                                                                   

consensus_11081#0      CGGT 778
consensus_11081#1      ----