cluster # 11082

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Oryza sativa
cluster # 11082 cluster # 11082 Sequences # 8 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_11082#0 length = 664 sequences # 2

consensus_11082#1 length = 611 sequences # 6

consensusID : consensus_11082#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 664
fasta sequence

                              [GTCAACCTTAATATAATCGAACAAAAATCGTTGCACCAAAAGACACTCTCTTGTATTAAAATCAGCAACAGTTTAATTAATTGCTCACAAGATCATCCAAATGAATAGCGCCAAAGACATAACATCGCGTCTCTGGTCGATACTTTCTTCAATGCTTCAAGCTAAAGGAGCAACAGCTAGTGAGACGATGGCATAGCAACCAGGCAAACGCATCAGAAATCCAATCACTTTCCAGCCCTCTTCTGGTACTGGTCCTTGACCCACTTGATGCCACTGCTCGTCCCGGACTTCACCTTGTGCGCTCCGACCAGCGCCGCCGCCTTCGCCTTCACGAGGCCCTCCGACGCCGCGGCCTTCACGTTGC-CGGCCACCGTCTTCTTCTCGCTGTTCCCGCTGCTGCCTCCTCCTCCTCCTCCTTTCTTGAAGCTTCCGTCGCCACCAGATGAGCCCCACTGGTCTGCCCAGGTTGGGGCATCCTTCTTGGAACCCATGGAGACGCTAGCTGGAGCTGGAATAACAAGATGAACTGCACGTTGTTTCGCTAGTTTTACAATAAGAGAAGAATATTTTTTTTATGTGTATCAAACAGAACAGTGTTTTCTGAAGCAGAACTCGAGCAAATGAATAGAGAAAATTCTCACTGCTCTGGTGAGCAGTATGTGCA]

[+] EMBL BI305527             [GTCAACCTTAATATAATCGAACAAAAATCGTTGCACCAAAAGACACTCTCTTGTATTAAAATCAGCAACAGTTTAATTAATTGCTCACAAGATCATCCAAATGAATAGCGCCAAAGACATAACATCGCGTCTCTGGTCGATACTTTCTTCAATGCTTCAAGCTAAAGGAGCAACAGCTAGTGAGACGATGGCATAGCAACCAGGCAAACGCATCAGAAATCCAATCACTTTCCAGCCCTCTTCTGGTACTGGTCCTTGACCCACTTGATGCCACTGCTCGTCCCGGACTTCACCTTGTGCGCTCCGACCAGCGCCGCCGCCTTCGCCTTCACGAGGCCCTCCGACGCCGCGGCCTTCACGTTGC CGGCCACCGTCTTCTTCTCGCTGTTCCCGCTGCTGCCTCCTCCTCCTCCTCCTTTCTTGAAGCTTCCGTCGCCACCAGATGAGCCCCACTGGTCTGCCCAGGTTGGGGCATCCTTCTTGGAACCCATGGAGACGCTAGCTGGAGCTGGAATAACAAGATGAACTGCACGTTGTTTCGCTAGTTTTACAATAAGAGAAGAATATTTTTTTTATGTGTATCAAACAGAACAGTGTTTTCTGAAGCAGAACTCGAGCAAATGAATAGAGAAAATTCTCACTGCTCTGGTGAGCAGTATGTGCA]
[-] EMBL BI806435             [                                   CCAAAAGACNCTCTCTTGTATTAAAATCAGCAACAGTTTAATTAA TG TCACAAGATCATCCAAATGAATAGCGCCAAAGACATAACCTCCCGTCTCTGGTCGATACTTTCTTCAATG TTCAAGCTAAAGGAGCAACAGCTAGTGAGACGATGGCATAGCAACCAGGCAAACGCATCAGAAATCCAATCACTTTCCAGCCCTCTTCTGGTACTGG CCTTGACCCACTTGATGCCACTG TCGTCCCGGACTTCACCTTGTGCGCTCCGACCAGCGCCG CGCCTTCGCCTTCACGAGGGCCTCCGACGCCGCGG CTTCACGTAGCACGG CA CGTCTTCTTCTCGCTGTTCCCG TG TG CTCCTCCTCCTCCTCCTTTCTTGAAGCTTCCGTCG CACCAGATGAGCCCCACTGGTCTG CCAGGT                                                                                                                                                                                                     ]




>consensus_11082#0
GTCAACCTTAATATAATCGAACAAAAATCGTTGCACCAAAAGACACTCTCTTGTATTAAA
ATCAGCAACAGTTTAATTAATTGCTCACAAGATCATCCAAATGAATAGCGCCAAAGACAT
AACATCGCGTCTCTGGTCGATACTTTCTTCAATGCTTCAAGCTAAAGGAGCAACAGCTAG
TGAGACGATGGCATAGCAACCAGGCAAACGCATCAGAAATCCAATCACTTTCCAGCCCTC
TTCTGGTACTGGTCCTTGACCCACTTGATGCCACTGCTCGTCCCGGACTTCACCTTGTGC
GCTCCGACCAGCGCCGCCGCCTTCGCCTTCACGAGGCCCTCCGACGCCGCGGCCTTCACG
TTGCCGGCCACCGTCTTCTTCTCGCTGTTCCCGCTGCTGCCTCCTCCTCCTCCTCCTTTC
TTGAAGCTTCCGTCGCCACCAGATGAGCCCCACTGGTCTGCCCAGGTTGGGGCATCCTTC
TTGGAACCCATGGAGACGCTAGCTGGAGCTGGAATAACAAGATGAACTGCACGTTGTTTC
GCTAGTTTTACAATAAGAGAAGAATATTTTTTTTATGTGTATCAAACAGAACAGTGTTTT
CTGAAGCAGAACTCGAGCAAATGAATAGAGAAAATTCTCACTGCTCTGGTGAGCAGTATG
TGCA

consensusID : consensus_11082#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 611
fasta sequence

                              [TTTTTACACTTTTTTGTATTAAAATCAGCAACAGTTTAATTAATTGCTCACAAGATCATCCAAATGAATAGCGCCAAAGACATAACCTCCCGTCTCTGGTCGATACTTTCTTCAATGCTTCAAGCTAAAGGAGCAACAGCTAGTGAGACGATGGCATAGCAACCAGGCAAACGCATCAGAAATCCAATCACTTTCCAGCCCTCTTCTGGTACTGGCCCTTGACCCACTTGATGCCACTGCTCGTCCCGGACTTCACCTTGTGCGCTCCGACCAGCGCCGCCGCCTTCGCCTTCACGAGGCCCTCCGACGCCGCGGCCTTCACGTTGCCGGCCACCGTCTTCTTCTCGCTGTTCCCGCTGCTGCCTCCTCCTCCTCCTCCTTTCTTGAAGCTTCCGTCGCCACCAGATGAGCCCCACTGGTCTGCCCAGGTTTGGGCATCCTTCTTGGAACCCATGGAGACGCTAGCTGGAGATTGAGATTAATCTGATGACGATATGTTTCTTCCCTTCTTCCTTTGGGCTGTGACCTTCAAGGCTTCTTTTATACACACAGGAGATGTAAAAAAAAAAAAAAAAGAGGGGAAATTACCTTTGCTTCGTGAGGTGGGAGTA]

[-] EMBL CF334767             [TTTTTTTTTTTTTTTTTATTAAAATCAGCAACAGTTTAATTAATTGCTCACAAGATCATCCAAATGAATAGCGCCAAAGACATAACCTCCCGTCTCTGGTCGATACTTTCTTCAATGCTTCAAGCTAAAGGAGCAACAGCTAGTGAGACGATGGCATAGCAACCAGGCAAACGCATCAGAAATCCAATCACTTTCCAGCCCTCTTCTGGTACTGGCCCTTGACCCACTTGATGCCACTGCTCGTCCCGGACTTCACCTTGTGCGCTCCGACCAGCGCCGCCGCCTTCGCCTTCACGAGGCCCTCCGACGCCGCGGCCTTCACGTTGCCGGCCACCGTCTTCTTCTCGCTGTTCCCGCTGCTGCCTCCTCCTCCTCCTCCTTTCTTGAAGCTTCCGTCGCCACCAGATGAGCCCCACTGGTCTGCCCAGGTTTGGGCATCCTTCTTGGAACCCATGGAGACGCTAGCTGGAGATTGAGATTAATCTGATGACGATATGTTTCTTCCCTTCTTCCTTTGGGCTGTGACCTTCAAGGCTTCTTTTATACACACAGGAGATGTAAAAAAAAAAAAAAAAGAGGGGAA                            ]
[-] EMBL AK063006             [     ACACTCTCTTGTATTAAAATCAGCAACAGTTTAATTAATTGCTCACAAGATCATCCAAATGAATAGCGCCAAAGACATAACCTCCCGTCTCTGGTCGATACTTTCTTCAATGCTTCAAGCTAAAGGAGCAACAGCTAGTGAGACGATGGCATAGCAACCAGGCAAACGCATCAGAAATCCAATCACTTTCCAGTCCTCTTCTGGTACTGGCCCTTGACCCACTTGATGCCACTGCTCGTCCCGGACTTCACCTTGTGCGCTCCGACCAGCGCCGCCGCCTTCGCCTTCACGAGGCCCTCCGACGCCGCGGCCTTCACGTTGCCGGCCACCGTCTTCTTCTCGCTGTTCCCGCTGCTGCCTCCTCCTCCTCCTCCTTTCTTGAAGCTTCCGTCGCCACCAGATGAGCCCCACTGGTCTGCCCAGGTTTGGGCATCCTTCTTGGAACCCATGGAGACGCTAGCTGGAGATTGAGATTAATCTGATGACGATATGTTTCTTCCCTTCTTCCTTTGGGCTGTGACCTTCAAGGCTTCTTTTATACACACAGGAGATGT   AAAAAAAAAAAAAGAGGGGAAATTACCTTTGCTTCGTGAGGTGGGAGTA]
[-] EMBL AK104941             [     ACACTCTCTTGTATTAAAATCAGCAACAGTTTAATTAATTGCTCACAAGATCATCCAAATGAATAGCGCCAAAGACATAACCTCCCGTCTCTGGTCGATACTTTCTTCAATGCTTCAAGCTAAAGGAGCAACAGCTAGTGAGACGATGGCATAGCAACCAGGCAAACGCATCAGAAATCCAATCACTTTCCAGCCCTCTTCTGGTACTGGCCCTTGACCCACTTGATGCCACTGCTCGTCCCGGACTTCACCTTGTGCGCTCCGACCAGCGCCGCCGCCTTCGCCTTCACGAGGCCCTCCGACGCCGCGGCCTTCACGTTGCCGGCCACCGTCTTCTTCTCGCTGTTCCCGCTGCTGCCTCCTCCTCCTCCTCCTTTCTTGAAGCTTCCGTCGCCACCAGATGAGCCCCACTGGTCTGCCCAGGTTTGGGCATCCTTCTTGGAACCCATGGAGACGCTAGCTGGAGATTGAGATTAATCTGATGACGATATGTTTCTTCCCT                                                                                                        ]
[-] EMBL AU095284             [         TTTTTTGTATTAAAATCAGCAACAGTTTAATTAATTGCTCACAAGATCATCCAAATGAATAGCGCCAAAGACATAACCNCCCGTCTCTGGTCGATACTTTCTTCAATGCTTCAAGCTAAAGGAGCAACAGCTAGTGAGACGATGGCATAGCAACCAGGCAAACGCATCAGAAATCCAATCACTTTCCAGCCCTCTTCTGGTACNGGCCCTTGACCCACTTGATGCCACNGCTCGTCCCGGACTTCACCTTGTGCGCNCCGACCAGCGCCGCCGCCTTCGCCTTCACGAGGCCCNCCGACGCCGNGGCCTTCACGTTGCCGGCCACCGTCTTCT                                                                                                                                                                                                                                                                             ]
[+] EMBL CF334766             [           TTTTTTATTAAAATCAGCAACAGTTTAATTAATTGCTCACAAGATCATCCAAATGAATAGCGCCAAAGACATAACCTCCCGTCTCTGGTCGATACTTTCTTCAATGCTTCAAGCTAAAGGAGCAACAGCTAGTGAGACGATGGCATAGCAACCAGGCAAACGCATCAAAAATCCAATCACTTTCCAGCCCTCTTCTGGTACTGGCCCTTGACCCACTTGATGCCACTGCTCGTCCCGGACTTCACCTTGTGCGCTCCGACCAGCGCCGCCGCCTTCGCCTTCACGAGGCCCTCCGACGCCGCGGCCTTCACGTTGCCGGCCACCGTCTTCTTCTCGCTGTTCCCGCTGCTGCCTCCTCCTCCTCCTCCTTTCTTGAAGCTTCCGTCGCCACCAGATGAGCCCCACTGGTCTGCCCAGGTTTGGGCATCCTTCTTGGAACCCATGGAGACGCTAGCTGGAGATTGAGATTAATCTGATGACGATATGTTTCTTCCCTTCTTCCTTTGGGCTGTGACCTTCAAGGCTTCTTTTATACACACAGGAGATGTAAAAAAAAAAAAAAAAGAGGGGAAATTACCTTTt                  ]
[-] EMBL AU095283             [                                                                                                                                                        GGCATAGCAACCAGGCAAACGCATCAGAAATCCAATCACTTTCCAGCCNTCTTCTGGTACTGGCCCTTGACCCACTTGATGCNACTGCTCGTCCCGGACTTCACCTTGTGCGCTCCGACCAGCGCCGCCGCCTTCGCCTTCACGAGGCCCTCCGACGCCGCGGNCTTCACGTTGCCGGCCACCGTCTTCTTCTCGCTGTTCCCGCTGCTGCCTCCTCCTCCTCCTCCTTTCTTGAAGCTTCCGTCGCCACCAGATGAGCCCCACTGGTCTGCCCAGGTTTGGGNATCCTTCTTGGAACCCATGGAGACGCTAGCTGGAGATTGAGATTAATCTGAT                                                                                                                           ]




>consensus_11082#1
TTTTTACACTTTTTTGTATTAAAATCAGCAACAGTTTAATTAATTGCTCACAAGATCATC
CAAATGAATAGCGCCAAAGACATAACCTCCCGTCTCTGGTCGATACTTTCTTCAATGCTT
CAAGCTAAAGGAGCAACAGCTAGTGAGACGATGGCATAGCAACCAGGCAAACGCATCAGA
AATCCAATCACTTTCCAGCCCTCTTCTGGTACTGGCCCTTGACCCACTTGATGCCACTGC
TCGTCCCGGACTTCACCTTGTGCGCTCCGACCAGCGCCGCCGCCTTCGCCTTCACGAGGC
CCTCCGACGCCGCGGCCTTCACGTTGCCGGCCACCGTCTTCTTCTCGCTGTTCCCGCTGC
TGCCTCCTCCTCCTCCTCCTTTCTTGAAGCTTCCGTCGCCACCAGATGAGCCCCACTGGT
CTGCCCAGGTTTGGGCATCCTTCTTGGAACCCATGGAGACGCTAGCTGGAGATTGAGATT
AATCTGATGACGATATGTTTCTTCCCTTCTTCCTTTGGGCTGTGACCTTCAAGGCTTCTT
TTATACACACAGGAGATGTAAAAAAAAAAAAAAAAGAGGGGAAATTACCTTTGCTTCGTG
AGGTGGGAGTA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_11082#0      GTCAACCTTAATATAATCGAACAAAAATCGTTGCACCAAAAGACACTCTCTTGTATTAAA 60
consensus_11082#1      -------------------------------------TTTTTACACTTTTTTGTATTAAA 23
                                                                 ***** * **********

consensus_11082#0      ATCAGCAACAGTTTAATTAATTGCTCACAAGATCATCCAAATGAATAGCGCCAAAGACAT 120
consensus_11082#1      ATCAGCAACAGTTTAATTAATTGCTCACAAGATCATCCAAATGAATAGCGCCAAAGACAT 83
                       ************************************************************

consensus_11082#0      AACATCGCGTCTCTGGTCGATACTTTCTTCAATGCTTCAAGCTAAAGGAGCAACAGCTAG 180
consensus_11082#1      AACCTCCCGTCTCTGGTCGATACTTTCTTCAATGCTTCAAGCTAAAGGAGCAACAGCTAG 143
                       *** ** *****************************************************

consensus_11082#0      TGAGACGATGGCATAGCAACCAGGCAAACGCATCAGAAATCCAATCACTTTCCAGCCCTC 240
consensus_11082#1      TGAGACGATGGCATAGCAACCAGGCAAACGCATCAGAAATCCAATCACTTTCCAGCCCTC 203
                       ************************************************************

consensus_11082#0      TTCTGGTACTGGTCCTTGACCCACTTGATGCCACTGCTCGTCCCGGACTTCACCTTGTGC 300
consensus_11082#1      TTCTGGTACTGGCCCTTGACCCACTTGATGCCACTGCTCGTCCCGGACTTCACCTTGTGC 263
                       ************ ***********************************************

consensus_11082#0      GCTCCGACCAGCGCCGCCGCCTTCGCCTTCACGAGGCCCTCCGACGCCGCGGCCTTCACG 360
consensus_11082#1      GCTCCGACCAGCGCCGCCGCCTTCGCCTTCACGAGGCCCTCCGACGCCGCGGCCTTCACG 323
                       ************************************************************

consensus_11082#0      TTGCCGGCCACCGTCTTCTTCTCGCTGTTCCCGCTGCTGCCTCCTCCTCCTCCTCCTTTC 420
consensus_11082#1      TTGCCGGCCACCGTCTTCTTCTCGCTGTTCCCGCTGCTGCCTCCTCCTCCTCCTCCTTTC 383
                       ************************************************************

consensus_11082#0      TTGAAGCTTCCGTCGCCACCAGATGAGCCCCACTGGTCTGCCCAGGTTGGGGCATCCTTC 480
consensus_11082#1      TTGAAGCTTCCGTCGCCACCAGATGAGCCCCACTGGTCTGCCCAGGTTTGGGCATCCTTC 443
                       ************************************************ ***********

consensus_11082#0      TTGGAACCCATGGAGACGCTAGCTGGAGCTGGAA--TAACAAGATGAACTGCACGTTGTT 538
consensus_11082#1      TTGGAACCCATGGAGACGCTAGCTGGAGATTGAGATTAATCTGATGA-CGATATGTTTCT 502
                       **************************** * **   ***   ***** *   * ***  *

consensus_11082#0      TCGCTAGTTTTACAATAAGAGAAGAATATTTTTTTTATGTGTAT-CAAACAGAACAGTGT 597
consensus_11082#1      TCCCT--TCTTCCTTTGGGCTGTGACCTTCAAGGCTTCTTTTATACACACAGGAGA---- 556
                       ** **  * ** *  *  *    **   *      *   * *** ** **** * *    

consensus_11082#0      TTTCTGAAGCAGAACTCGAGCAAATGAATAGAGAAAATTCTCACTGCTCTGGTGAGCAGT 657
consensus_11082#1      --TGTAAAAAAAAA-------AAAAAAAGAGGGGAAATTACCTTTGCTTCG-TGAGGTGG 606
                         * * **  * **       ***  ** ** * *****  *  ****  * ****  * 

consensus_11082#0      ATGTGCA 664
consensus_11082#1      GAGTA-- 611
                         **