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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_111#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1693 fasta sequence
[TAGCTGCTGCGCGCTGACCAGCTAGCTGCCAATTGCTCCCTGTGAGCTGCGTGCTGCGAGAGGTCAAGCTAGCTGTAGTGGTCATGGCGAGCGTCCCGCTCCTCGCGGAGTGGCCGGCCGGGAAAGAGAAGGAGGAGGGGCGCGTCCGGCGGCGGCTGCCGGCGTTGGCGAGGGAGGCGTGGGAGGAGTCCAAGAAGCTGTGGGAGATCGTCGGCCCGGCCGTGTTCCTGCGGCTGGTGCTGTACAGCTTCAACATCATCAGCCAGGCCTTCGCCGGCCACATCGGCGACCTCGAGCTCGCCGCCTTCTCCATCGCCAACAACGTCATCACCGGCCTCAACTTTGGCTTCCTGCTGGGCATGGCTAGTGCACTGGAAACACTCTGCGGCCAGGCCTACGGCGCAAAGCAGTGCTCCATGCTTGGCATCTACCTACAACGTTCTTGGATCATCCTCTTCGTCTTCGCCGTGCTCCTCGTCCCGACCTACGTCTTCACCGCCCCGCTGCTCGAGGCGCTGGGCCAGCCCGCCGCGCTGGCGCGCAAGGCCGGCATGGTCAGCGTGTACATGCTCCCGTCGCACTTCCAGTACGCCGTCCTCCTGCCGCTCAACAAGTTCCTGCAGAGCCAGCGCAAGAACTGGGTCACCGTGGTGACCGCGGCGGCGGCGTTCCCGGTGCACATCGCGGTGAGCTGGCTGCTGGTCAGCCGCCTCCGGTTCGGGGTGCTCGGCGCCGCCATGTCGCTCGGTGTCTCCGGCTGGCTCGTCACGCTGCTGCAGCTCGCCTACGTCGTCGGCGGCGGGTGCCCGGTGACGTGGAGTGGGTTCTCCCCGTTGGCGTTCGTGGATTTGTGGGGTTTTGTCAAGCTGTCCGTCTCGTCTGGAGTTATGGTATGTTTGGAGACTTGGTACTACAAGATACTGATCCTGCTCACAGGACACCTGAAGAATTCTGAACTTGCAGTGAATGCTCTTTCTATCTGTATGAGTTTTCAATCTTGGGAGATGATGATTCCAGTGGGATTCTTAGCCGGCACCGGGGTGCGAGTGGCTAACGAGCTTGGCGCGGGCAACGGGAAGGGAGCAAAGTTCGCGACGATCGTGTCGACGACGACCTCCTTCCTGATCGGCCTCTTCTTCAGCGCGCTGGCGCTGGCCTTCCATGACAAGATAGCGCTCGTCTTCTCGTCGAGCAATGCGGTGATCGACGCCGTGGACAACATCTCCTTTCTGCTAGCCGTCACCATCCTCCTCAACGGCGTCCAACCTGTTCTTTCAGGGGTTGCTATTGGTTCAGGGTGGCAAGCGGCAGTGGCCTATGTAAACATCGGATGCTACTACTTCATCGGAGTTCCTATCGGTGTTCTGCTTGGTTGGAGTTTCAACCTTGGAGTTTTTGGAATTTGGGCTGGAATGATCGCTGGCACTGCAATCCAGACTATAATTCTGGCGCACATGACCATTCAGTGTGATTGGAACAAAGAGGTTTTGCAAGCAAGTGAACGCGTCCAAAGATGGGGGAACCCAAAATGAACAGGAGCAAGTATATTATGTGTTCGTACTAGCAGTATTGTGGATTGTTCACTGTATCAACAGGTTTTCCATGTTGGAGAATTGGGCTTGCTTGCTTGAGTTGCGGCTTGTAATTTGTAGAACTTTAGTTTAGAATTTGGTTGGTTACTCTACTTGCTTGA]
[+] EMBL AK103478 [TAGCTGCTGCGCGCTGACCAGCTAGCTGCCAATTGCTCCCTGTGAGCTGCGTGCTGCGAGAGGTCAAGCTAGCTGTAGTGGTCATGGCGAGCGTCCCGCTCCTCGCGGAGTGGCCGGCCGGGAAAGAGAAGGAGGAGGGGCGCGTCCGGCGGCGGCTGCCGGCGTTGGCGAGGGAGGCGTGGGAGGAGTCCAAGAAGCTGTGGGAGATCGTCGGCCCGGCCGTGTTCCTGCGGCTGGTGCTGTACAGCTTCAACATCATCAGCCAGGCCTTCGCCGGCCACATCGGCGACCTCGAGCTCGCCGCCTTCTCCATCGCCAACAACGTCATCACCGGCCTCAACTTTGGCTTCCTGCTGGGCATGGCTAGTGCACTGGAAACACTCTGCGGCCAGGCCTACGGCGCAAAGCAGTGCTCCATGCTTGGCATCTACCTACAACGTTCTTGGATCATCCTCTTCGTCTTCGCCGTGCTCCTCGTCCCGACCTACGTCTTCACCGCCCCGCTGCTCGAGGCGCTGGGCCAGCCCGCCGCGCTGGCGCGCAAGGCCGGCATGGTCAGCGTGTACATGCTCCCGTCGCACTTCCAGTACGCCGTCCTCCTGCCGCTCAACAAGTTCCTGCAGAGCCAGCGCAAGAACTGGGTCACCGTGGTGACCGCGGCGGCGGCGTTCCCGGTGCACATCGCGGTGAGCTGGCTGCTGGTCAGCCGCCTCCGGTTCGGGGTGCTCGGCGCCGCCATGTCGCTCGGTGTCTCCGGCTGGCTCGTCACGCTGCTGCAGCTCGCCTACGTCGTCGGCGGCGGGTGCCCGGTGACGTGGAGTGGGTTCTCCCCGTTGGCGTTCGTGGATTTGTGGGGTTTTGTCAAGCTGTCCGTCTCGTCTGGAGTTATGGTATGTTTGGAGACTTGGTACTACAAGATACTGATCCTGCTCACAGGACACCTGAAGAATTCTGAACTTGCAGTGAATGCTCTTTCTATCTGTATGAGTTTTCAATCTTGGGAGATGATGATTCCAGTGGGATTCTTAGCCGGCACCGGGGTGCGAGTGGCTAACGAGCTTGGCGCGGGCAACGGGAAGGGAGCAAAGTTCGCGACGATCGTGTCGACGACGACCTCCTTCCTGATCGGCCTCTTCTTCAGCGCGCTGGCGCTGGCCTTCCATGACAAGATAGCGCTCGTCTTCTCGTCGAGCAATGCGGTGATCGACGCCGTGGACAACATCTCCTTTCTGCTAGCCGTCACCATCCTCCTCAACGGCGTCCAACCTGTTCTTTCAGGGGTTGCTATTGGTTCAGGGTGGCAAGCGGCAGTGGCCTATGTAAACATCGGATGCTACTACTTCATCGGAGTTCCTATCGGTGTTCTGCTTGGTTGGAGTTTCAACCTTGGAGTTTTTGGAATTTGGGCTGGAATGATCGCTGGCACTGCAATCCAGACTATAATTCTGGCGCACATGACCATTCAGTGTGATTGGAACAAAGAGGTTTTGCAAGCAAGTGAACGCGTCCAAAGATGGGGGAACCCAAAATGAACAGGAGCAAGTATATTATGTGTTCGTACTAGCAGTATTGTGGATTGTTCACTGTATCAACAGGTTTTCCATGTTGGAGAATTGGGCTTGCTTGCTTGAGTTGCGGCTTGTAATTTGTAGAACTTTAGTTTAGAATTTGGTTGGTTACTCTACTTGCTTGA]
consensusID : consensus_111#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 419 fasta sequence
[TTGACATCGGGGGGAAAACACAAGAGGAGGAATCGAAGAATTAATCGAAGCAGAGGAGGTTGGATTGTTCGTTCGTTCGGACGACACGGTCGGCGGCGATGGGTGACGGGCGAGGGGATGAGGAGGAGTGCATGGTGGCGCTGCTGAATGGCGGCGGCGCGGCGAAGGAGGGCTGGTGTTTTTGTCCGGCGGCGACGGCAAGCTGAGGAGGAGGGTGTGGGAGGAGTCNAGGAAGCTGTGGGTCATCGTGGCGCCGGCCATCTTCAGCCGCGTCGTCACCTACAGCATGAACGTCATCACGCAGGCGTTCGCCGGCCACCTCGGCGACCTCGAGCTCGCCGCCATCTCCATCGCCAACACCGTCGTCGTCGGCTTCAACTTCGGCCTCATGCTTTGGCATGGCGAGCGCGCTGGAGACG]
[+] EMBL CB636985 [TTGACATCGGGGGGAAAACACAAGAGGAGGAATCGAAGAATTAATCGAAGCAGAGGAGGTTGGATTGTTCGTTCGTTCGGACGACACGGTCGGCGGCGATGGGTGACGGGCGAGGGGATGAGGAGGAGTGCATGGTGGCGCTGCTGAATGGCGGCGGCGCGGCGAAGGAGGGCTGGTGTTTTTGTCCGGCGGCGACGGCAAGCTGAGGAGGAGGGTGTGGGAGGAGTCNAGGAAGCTGTGGGTCATCGTGGCGCCGGCCATCTTCAGCCGCGTCGTCACCTACAGCATGAACGTCATCACGCAGGCGTTCGCCGGCCACCTCGGCGACCTCGAGCTCGCCGCCATCTCCATCGCCAACACCGTCGTCGTCGGCTTCAACTTCGGCCTCATGCTTTGGCATGGCGAGCGCGCTGGAGACG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_111#0 -------------------------------------TAGCTGCTGCGCGCTGACCAGCT 23
consensus_111#1 TTGACATCGGGGGGAAAACACAAGAGGAGGAATCGAAGAATTAATCGAAGCAGAGGAGGT 60
* * * ** ** ** *
consensus_111#0 AG--CTGCCAATTGCTCCCTGTGA-GCTGCGTGCTGCGAGAGGTCAAGCTAGCTGTAGTG 80
consensus_111#1 TGGATTGTTCGTTCGTTCGGACGACACGGTCGGCGGCGATGGGTGACG---GGCGAGGGG 117
* ** ** * * ** * * ** **** *** * * * * * *
consensus_111#0 GTCATGGCGAGCGTCCCGCTCCTC-GCGGAGTGGC--CGGCCGGGAAAGAGAAGGAGGAG 137
consensus_111#1 ATGAGGAGGAGTGCATGGTGGCGCTGCTGAATGGCGGCGGCGCGGCGAAGGAGGGCTGGT 177
* * * *** * * * * ** ** **** **** ** * ** ** *
consensus_111#0 GGGCGCGTCCGGCGGCGGCTGCCGGCGTTGGCGAGGGAGGCGTGGGAGGAGTCCAAGAAG 197
consensus_111#1 GTTTTTGTCCGGCGGCGACGGCAAGC--TGAGGAGGAGGGTGTGGGAGGAGTCNAGGAAG 235
* *********** * ** ** ** **** ** ************ * ****
consensus_111#0 CTGTGGGAGATCGTCGGCCCGGCCGTGTTCCTGCGGCTGGTGCTGTACAGCTTCAACATC 257
consensus_111#1 CTGTGGGTCATCGTGGCGCCGGCCATCTTCAGCCGCGTCGTCACCTACAGCATGAACGTC 295
******* ***** * ****** * *** ** * ** ****** * *** **
consensus_111#0 ATCAGCCAGGCCTTCGCCGGCCACATCGGCGACCTCGAGCTCGCCGCCTTCTCCATCGCC 317
consensus_111#1 ATCACGCAGGCGTTCGCCGGCCACCTCGGCGACCTCGAGCTCGCCGCCATCTCCATCGCC 355
**** ***** ************ *********************** ***********
consensus_111#0 AACAACGTCATCACCGGCCTCAACTTTGGCTTCCTGCTG-GGCATGGCTAGTGCACTGGA 376
consensus_111#1 AACACCGTCGTCGTCGGCTTCAACTTCGGCCTCATGCTTTGGCATGGCGAGCGCGCTGGA 415
**** **** ** **** ******* *** ** **** ******** ** ** *****
consensus_111#0 AACACTCTGCGGCCAGGCCTACGGCGCAAAGCAGTGCTCCATGCTTGGCATCTACCTACA 436
consensus_111#1 GACG-------------------------------------------------------- 419
**
consensus_111#0 ACGTTCTTGGATCATCCTCTTCGTCTTCGCCGTGCTCCTCGTCCCGACCTACGTCTTCAC 496
consensus_111#1 ------------------------------------------------------------
consensus_111#0 CGCCCCGCTGCTCGAGGCGCTGGGCCAGCCCGCCGCGCTGGCGCGCAAGGCCGGCATGGT 556
consensus_111#1 ------------------------------------------------------------
consensus_111#0 CAGCGTGTACATGCTCCCGTCGCACTTCCAGTACGCCGTCCTCCTGCCGCTCAACAAGTT 616
consensus_111#1 ------------------------------------------------------------
consensus_111#0 CCTGCAGAGCCAGCGCAAGAACTGGGTCACCGTGGTGACCGCGGCGGCGGCGTTCCCGGT 676
consensus_111#1 ------------------------------------------------------------
consensus_111#0 GCACATCGCGGTGAGCTGGCTGCTGGTCAGCCGCCTCCGGTTCGGGGTGCTCGGCGCCGC 736
consensus_111#1 ------------------------------------------------------------
consensus_111#0 CATGTCGCTCGGTGTCTCCGGCTGGCTCGTCACGCTGCTGCAGCTCGCCTACGTCGTCGG 796
consensus_111#1 ------------------------------------------------------------
consensus_111#0 CGGCGGGTGCCCGGTGACGTGGAGTGGGTTCTCCCCGTTGGCGTTCGTGGATTTGTGGGG 856
consensus_111#1 ------------------------------------------------------------
consensus_111#0 TTTTGTCAAGCTGTCCGTCTCGTCTGGAGTTATGGTATGTTTGGAGACTTGGTACTACAA 916
consensus_111#1 ------------------------------------------------------------
consensus_111#0 GATACTGATCCTGCTCACAGGACACCTGAAGAATTCTGAACTTGCAGTGAATGCTCTTTC 976
consensus_111#1 ------------------------------------------------------------
consensus_111#0 TATCTGTATGAGTTTTCAATCTTGGGAGATGATGATTCCAGTGGGATTCTTAGCCGGCAC 1036
consensus_111#1 ------------------------------------------------------------
consensus_111#0 CGGGGTGCGAGTGGCTAACGAGCTTGGCGCGGGCAACGGGAAGGGAGCAAAGTTCGCGAC 1096
consensus_111#1 ------------------------------------------------------------
consensus_111#0 GATCGTGTCGACGACGACCTCCTTCCTGATCGGCCTCTTCTTCAGCGCGCTGGCGCTGGC 1156
consensus_111#1 ------------------------------------------------------------
consensus_111#0 CTTCCATGACAAGATAGCGCTCGTCTTCTCGTCGAGCAATGCGGTGATCGACGCCGTGGA 1216
consensus_111#1 ------------------------------------------------------------
consensus_111#0 CAACATCTCCTTTCTGCTAGCCGTCACCATCCTCCTCAACGGCGTCCAACCTGTTCTTTC 1276
consensus_111#1 ------------------------------------------------------------
consensus_111#0 AGGGGTTGCTATTGGTTCAGGGTGGCAAGCGGCAGTGGCCTATGTAAACATCGGATGCTA 1336
consensus_111#1 ------------------------------------------------------------
consensus_111#0 CTACTTCATCGGAGTTCCTATCGGTGTTCTGCTTGGTTGGAGTTTCAACCTTGGAGTTTT 1396
consensus_111#1 ------------------------------------------------------------
consensus_111#0 TGGAATTTGGGCTGGAATGATCGCTGGCACTGCAATCCAGACTATAATTCTGGCGCACAT 1456
consensus_111#1 ------------------------------------------------------------
consensus_111#0 GACCATTCAGTGTGATTGGAACAAAGAGGTTTTGCAAGCAAGTGAACGCGTCCAAAGATG 1516
consensus_111#1 ------------------------------------------------------------
consensus_111#0 GGGGAACCCAAAATGAACAGGAGCAAGTATATTATGTGTTCGTACTAGCAGTATTGTGGA 1576
consensus_111#1 ------------------------------------------------------------
consensus_111#0 TTGTTCACTGTATCAACAGGTTTTCCATGTTGGAGAATTGGGCTTGCTTGCTTGAGTTGC 1636
consensus_111#1 ------------------------------------------------------------
consensus_111#0 GGCTTGTAATTTGTAGAACTTTAGTTTAGAATTTGGTTGGTTACTCTACTTGCTTGA 1693
consensus_111#1 ---------------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||