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Oryza sativa
cluster # 11100 cluster # 11100       Sequences # 8       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_11100#0 length = 885 sequences # 8  

consensusID : consensus_11100#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 8
consensus length = 885
fasta sequence
                              [TTGCCGTCCGATTGCTGTCCCCCGAGCTCCTATGCGCCGCCGCCGGCTCACTCCCCGCGTGAAGACGACGCCCTCCCTTCGCTGCGAAGATTCCCCGAAGATCGCTCTACTCCAGGTACAAGCCATGCGATCTTCAGAAGAGAGTAGTTCTGATGAGGACGATGAGATCCTTTCTGAGCTCAAAGAGAAGTGGGATGCTATTGAGAACAAGTCCTCTGTTCTCTTTTACGGAGGCGGAGCAATCATCGCTGTCTGGCTATCCTCGATTGTTGTCAAAGCTGTCGATTCAGTTCCAGTGCTTCCGAACATACTGGAGCTAGTTGGGCTTGGCTACTCGGGATGGTTTGTGTACCGCTACCTGCTCTTCAAGGAAAACCGGGAAGAACTGGCCAATGGCTTTGATGCTCTAAAGAAAAGGATCACTGGAAATGAGGAATAGCTGTGTATCCTGTTTCTCTGCTTGAACGTTGTCATTAGAGCCTTTTGTTTTTTCTCATGTAAATGCTGGAAGCGTTATTGATGTTTATGGCCTCCCACATCTTCTGTACTGTCTGCAGCTCAGCGGGGTTTGCAGTATCATCTGACTTCTGAACAGATCTCCACATTTATGGCTGCGCTAAAATGCTTGTGATTCTTCTGATATGGAGGTCAGCTGGTCCTGTTTCTTGGCTGGCTTCCTTTCCCCAATGATTCAGCTGTATGTTACTACTGCTAAGTTTAAGCCAGAACTGATAAGTTTAAGCTGTAGTACAAGCAATTATTTGAAATAAATTCAGTAGTCCGAGAAGATTTCTGTTCTTGTGCCAACAGCATATGTATCCTCTTGCTAGTTGACCGGTTAAGAGAGTTGATTCTTCTGTGCATGTTAATTCAGGGTAGTTAGTC]

[+] EMBL AK060045             [TTGCCGTCCGATTGCTGTCCCCCGAGCTCCTATGCGCCGCCGCCGGCTCACTCCCCGCGTGAAGACGACGCCCTCCCTTCGCTGCGAAGATTCCCCGAAGATCGCTCTACTCCAGGTACAAGCCATGCGATCTTCAGAAGAGAGTAGTTCTGATGAGGACGATGAGATCCTTTCTGAGCTCAAAGAGAAGTGGGATGCTATTGAGAACAAGTCCTCTGTTCTCTTTTACGGAGGCGGAGCAATCATCGCTGTCTGGCTATCCTCGATTGTTGTCAAAGCTGTCGATTCAGTTCCAGTGCTTCCGAACATACTGGAGCTAGTTGGGCTTGGCTACTCGGGATGGTTTGTGTACCGCTACCTGCTCTTCAAGGAAAACCGGGAAGAACTGGCCAATGGCTTTGATGCTCTAAAGAAAAGGATCACTGGAAATGAGGAATAGCTGTGTATCCTGTTTCTCTGCTTGAACGTTGTCATTAGAGCCTTTTGTTTTTTCTCATGTAAATGCTGGAAGCGTTATTGATGTTTATGGCCTCCCACATCTTCTGTACTGTCTGCAGCTCAGCGGGGTTTGCAGTATCATCTGACTTCTGAACAGATCTCCACATTTATGGCTGCGCTAAAATGCTTGTGATTCTTCTGATATGGAGGTCAGCTGGTCCTGTTTCTTGGCTGGCTTCCTTTCCCCAATGATTCAGCTGTATGTTACTACTGCTAAGTTTAAGCCAGAACTGATAAGTTTAAGCTGTAGTACAAGCAATTATTTGAAATAAATTCAGTAGTCCGAGAAGATTTCTGTTCTTGTGCCAACAGCATATGTATCCTCTTGCTAGTTGACCGGTTAAGAGAGTTGATTCTTCTGTGCATGTTAATTCAGGGTAGTTAGTC]
[+] EMBL AK068922             [TTGCCGTCCGATTGCTGTCCCCCGAGCTCCTATGCGCCGCCGCCGGCTCACTCCCCGCGTGAAGACGACGCCCTCCCTTCGCTGCGAAGATTCCCCGAAGATCGCTCTACTCCAGGTACAAGCCATGCGATCTTCAGAAGAGAGTAGTTCTGATGAGGACGATGAGATCCTTTCTGAGCTCAAAGAGAAGTGGGATGCTATTGAGAACAAGTCCTCTGTTCTCTTTTACGGAGGCGGAGCAATCATCGCTGTCTGGCTATCCTCGATTGTTGTCAAAGCTGTCGATTCAGTTCCAGTGCTTCCGAACATACTGGAGCTAGTTGGGCTTGGCTACTCGGGATGGTTTGTGTACCGCTACCTGCTCTTCAAGGAAAACCGGGAAGAACTGGCCAATGGCTTTGATGCTCTAAAGAAAAGGATCACTGGAAATGAGGAATAGCTGTGTATCCTGTTTCTCTGCTTGAACGTTGTCATTAGAGCCTTTTGTTTTTTCTCATGTAAATGCTGGAAGCGTTATTGATGTTTATGGCCTCCCACATCTTCTGTACTGTCTGCAGCTCAGCGGGGTTTGCAGTATCATCTGACTTCTGAACAGATCTCCACATTTATGGCTGCGCTAAAATGCTTGTGATTCTTCTGATATGGAGGTCGGCTGGTCCTGTTTCTTGGCTGGCTTCCTTTCCCCAATGATTCAGCTGTATGTTACTACTGCTAAGTTTAAGCCAGAACTGATAAGTTTAAGCTGTAGTACAAGCAATTATTTGAAATAAATT                                                                                                                ]
[+] EMBL CF332756             [TTGCCGTCCGATTGCTGTCCCCCGAGCTCCTATGCGCCGCCGCCGGCTCACTCCCCGCGTGAAGACGACGCCCTCCCTTCGCTGCGAAGATTCCCCGAAGATCGCTCTACTCCAGGTACAAGCCATGCGATCTTCAGAAGAGAGTAGTTCTGATGAGGACGATGAGATCCTTTCTGAGCTCAAAGAGAAGTGGGATGCTATTGAGAACAAGTCCTCTGTTCTCTTTTACGGAGGCGGAGCAATCATCGCTGTCTGGCTATCCTCGATTGTTGTCAAAGCTGTCGATTCAGTTCCAGTGCTTCCGAACATACTGGAGCTAGTTGGGCTTGGCTACTCGGGATGGTTTGTGTACCGCTACCTGCTCTTCAAGGAAAACCGGGAAGAACTGGCCAATGGCTNTGATGCTCTAAAGAAAAGGATCACTGGAAATGAGGAATAGCTGTGTATCCTGTTTCTCTGCTTG                                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL CF332668             [TTGCCGTCCGATTGCTGTCCCCCGAGCTCCTATGCGCCGCCGCCGGCTCACTCCCCGCGTGAAGACGACGCCCTCCCTTCGCTGCGAAGATTCCCCGAAGATCGCTCTACTCCAGGTACAAGCCATGCGATCTTCAGAAGAGAGTAGTTCTGATGAGGACGATGAGATCCTTTCTGAGCTCAAAGAGAAGTGGGATGCTATTGAGAACAAGTCCTCTGTTCTCTTTTACGGAGGCGGAGCAATCATCGCTGTCTGGCTATCCTCGATTGTTGTCAAAGCTGTCGATTCAGTTCCAGTGCTTCCGAACATACTGGAGCTAGTTGGGCTTGGCTACTCGGGATGGTTTGTGTACCGCTACCTGCTCTT AAGGAAAACCGGGAAGAACTGGCCAATGGCTTTGATGCTCTAAAGAAAAGGATCACTGGAAATGAGGAATAGCTGTGTATCCTGTTTCTCTGCTTG                                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL CB000132             [                                                                                                                                                                        CCTTTCTGAGCTCAAAGAGAAGTGGGATGCTATTGCGTACAAGTCCTCTGTTCTCTTTTACGGAGGCGGAGCAATCATCGCTGTCTGGCTATCCTCGATTGTTGTCAAAGCTGTCGATTCAGTTCCAGTGCTTCCGAACATACTGGAGCTAGTTGGGCTTGGCTACTCGGGATGGTTTGTGTACCGCTACCTGCTCTTCAAGGAAAACCGGGAAGAACTGGCCAATGGCTTTGATGCTCTAAAGAAAAGGATCACTGGAAATGAGGAATAGCTGTGTATCCTGTTTCTCTGCTTGAACGTTGTCATTAGAGCCTTTTGTTTTTTCTCATGTAAATGCTGGAAGCGTTATTGATGTTTATGGCCTCCCACATCTTCTGTACTGTCTGCAGCTCAGCGGGGTTTGCAGTATCATCTGACTTCTGAACAGATCTCCACATTTATGGCTGCGCTAAAATGCTTGTGATTCTTCTGATATGGAGGTCAGCTGGTCCTGTTTCTTGGCTGGCTTCCTT                                                                                                                                                                                                             ]
[+] EMBL CB000093             [                                                                                                                                                                        agTTTGTGAGATGAAAGAGAAGTGGGATGATATTGCGTTCAAGTCCTCTGTTCTCTTTTACGGAGGCGGAGCAATCATCGCTGTCTGGCTATCCTCGATTGTTGTCAAAGCTGTCGATTCAGTTCCAGTGCTTCCGAACATACTGGAGCTAGTTGGGCTTGGCTACTCGGGATGGTTTGTGTACCGCTACCTGCTCTTCAAGGAAAACCGGGAAGAACTGGCCAATGGCTTTGATGCTCTAAAGAAAAGGATCACTGGAAATGAGGAATAGCTGTGTATCCTGTTTCTCTGCTTGAACGTTGTCATTAGAGCCTTTTGTTTTTTCTCATGTAAATGCTGGAAGCGTTATTGATGTTTATGGCCTCCCACATCTTCTGTACTGTCTGCAGCTCAGCGGGGTTTGCAGAATCATCTGACTTCTGAACAGATCTCCACATTTATGGCTGCGCTAAAATGCTTGTGATTCTTCTGATATGGAGGTCAGCTGGTCCTGTTTCTTGGCTGGCTTCCTTTCCCCAATGATTCAGCTGTATGTTACTACTGCTAAGTTTAAGCCAGAACTGATAAGTTTAAGCTGTAGTACAAGCAATTATTTGAAATAAATTCAGTAGTCCGAGAAGATTTCTGTTCTTGTGCCAACAGCGTATGTAaaaaaaaa                                                           ]
[-] EMBL CF332755             [                                                                                                                                                                                                                                          CGGAGCAATCATCGCTGTCTGGCTATCCTCGATTGTTGTCAAAGCTGTCGATTCAGTTCCAGTGCTTCCGAACATACTGGAGCTAGTTGGGCTTGGCTACTCGGGATGGTTTGTGTACCGCTACCTGCTCTTCAAGGAAAACCGGGAAGAACTGGCCAATGGCTTTGATGCTCTAAAGAAAAGGATCACTGGAAATGAGGAATAGCTGTGTATCCTGTTTCTCTGCTTGAACGTTGTCATTAGAGCCTTTTGTTTTTTCTCATGTAAATGCTGGAAGCGTTATTGATGTTTATGGCCTCCCACATCTTCTGTACTGTCTGCAGCTCAGCGGGGTTTGCAGTATCATCTGACTTCTGAACAGATCTCCACATTTATGGCTGCGCTAAAATGCTTGTGATTCTTCTGATATGGAGGTCAGCTGGTCCTGTTTCTTGGCTGGCTTCCTTTCCCCAATGATTCAGCTGTATGTTACTACTGCTAAGTTTAAGCCAGAACTGATAAGTTTAAGCTGTAGTACAAGCAATTATTTGAAATAAATTCAGTAGTCCGAGAAGATTTCaaaaaaaa                                                                                    ]
[-] EMBL CF332667             [                                                                                                                                                                                                                                                                           TGTTGTCAAAGCTGTCGATTCAGTTCCAGTGCTTCCGAACATACTGGAGCTAGTTGGGCTTGGCTACTCGGGATGGTTTGTGTACCGCTACCTGCTCTTCAAGGAAAACCGGGAAGAACTGGCCAATGGCTTTGATGCTCTAAAGAAAAGGATCACTGGAAATGAGGAATAGCTGTGTATCCTGTTTCTCTGCTTGAACGTTGTCATTAGAGCCTTTTGTTTTTTCTCATGTAAATGCTGGAAGCGTTATTGATGTTTATGGCCTCCCACATCTTCTGTACTGTCTGCAGCTCAGCGGGGTTTGCAGTATCATCTGACTTCTGAACAGATCTCCACATTTATGGCTGCGCTAAAATGCTTGTGATTCTTCTGATATGGAGGTCAGCTGGTCCTGTTTCTTGGCTGGCTTCCTTTCCCCAATGATTCAGCTGTATGTTACTACTGCTAAGTTTAAGCCAGAACTGATAAGTTTAAGCTGTAGTACAAGCAATTATTTGAAATAAATTCAGTAGTCCGAGAAGATTTCaaaaaaaa                                                                                    ]


>consensus_11100#0 TTGCCGTCCGATTGCTGTCCCCCGAGCTCCTATGCGCCGCCGCCGGCTCACTCCCCGCGT GAAGACGACGCCCTCCCTTCGCTGCGAAGATTCCCCGAAGATCGCTCTACTCCAGGTACA AGCCATGCGATCTTCAGAAGAGAGTAGTTCTGATGAGGACGATGAGATCCTTTCTGAGCT CAAAGAGAAGTGGGATGCTATTGAGAACAAGTCCTCTGTTCTCTTTTACGGAGGCGGAGC AATCATCGCTGTCTGGCTATCCTCGATTGTTGTCAAAGCTGTCGATTCAGTTCCAGTGCT TCCGAACATACTGGAGCTAGTTGGGCTTGGCTACTCGGGATGGTTTGTGTACCGCTACCT GCTCTTCAAGGAAAACCGGGAAGAACTGGCCAATGGCTTTGATGCTCTAAAGAAAAGGAT CACTGGAAATGAGGAATAGCTGTGTATCCTGTTTCTCTGCTTGAACGTTGTCATTAGAGC CTTTTGTTTTTTCTCATGTAAATGCTGGAAGCGTTATTGATGTTTATGGCCTCCCACATC TTCTGTACTGTCTGCAGCTCAGCGGGGTTTGCAGTATCATCTGACTTCTGAACAGATCTC CACATTTATGGCTGCGCTAAAATGCTTGTGATTCTTCTGATATGGAGGTCAGCTGGTCCT GTTTCTTGGCTGGCTTCCTTTCCCCAATGATTCAGCTGTATGTTACTACTGCTAAGTTTA AGCCAGAACTGATAAGTTTAAGCTGTAGTACAAGCAATTATTTGAAATAAATTCAGTAGT CCGAGAAGATTTCTGTTCTTGTGCCAACAGCATATGTATCCTCTTGCTAGTTGACCGGTT AAGAGAGTTGATTCTTCTGTGCATGTTAATTCAGGGTAGTTAGTC



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)