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Oryza sativa
cluster # 11109 cluster # 11109       Sequences # 8       consensus # 4


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_11109#0 length = 1176 sequences # 5  
consensus_11109#1 length = 714 sequences # 1  
consensus_11109#2 length = 664 sequences # 1  
consensus_11109#3 length = 347 sequences # 1  

consensusID : consensus_11109#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 1176
fasta sequence
                              [CTTATTTTGAACTGTTATTACTTCCTTTTCAGGATATGGCATGCATGCAGGCCTTTCACCTCAGCGCCAACACAGACCAGAAAACAGAAATTTTGATGATACTTTTGGTCCACGTTATGCTCATGGATATCAAGGTGGTGGTAGAGGAGTCGCGAGGTTCCGGGATGGTTCTCCACCATATGGAAGAGGAGGCAGATCATATGGGAGGGGCTCTGGTGCTCCTGGAAAGGAGTTCATTAATATTGATGGAGAATATGTTCACAGGAATGATCCAAATCTGTCGCCAAGAGAAGGCGATTGGATATGCCAGAATCCCAACTGTGGAAATCTTAATTTTGCTCGGCGAACTCACTGTAACAACTGCAACAAGTATCGCTATTCACGAGAAGTATGTGAGCCTGGCCACAGTCCTCACAGAGATTACGTCAATCCTCCACGTGGACCTGCAAGGAATC-TTGGTCCAAGTGATCGGGCCCCTCCAAGAGAGATGGCCAGGTACGGGTCACCACCCCGTGGTTGGGGAAGTGACCCTAAGGGTTATCCAGCTCGATCACCTCCAGATCATGCAGGACGGTATGCAGATCCAGTGCAAAGGGAAAGAATGGGCTTCCGTGGTGATTGTCAGTTGAGGGACCGTGTAAAGCATGACTGGTCTTCAGCTGAAGACTACAACCCAAGGGAGCGCCCACATGATATGTATCTTGAGAGGAGTCGGCGACGATCAGTGTCTCCTCGGGATAACTGGGGGCACAATATGCGGGACCGGAGCAGATCCCCTGCAGGAGGCAGGCTGAAGGGTTCTTTCACAGGTGGAGGTCGACCAGACTTGTATGCTGATCCCTATGCAGGGAGGGGGCGACCCAACAATTTAGATGATGTCCGTGGCCGTGGCCGTGGCCGTGGCCGTGGTTACATACCTGGAGGTGCTACATACCTAGGCAAGGGTCGAGGTGACAGGCGTGCTGCTCCCAGTAGTAGGAATGATGGAAGCTATTAGATCATCATAGTCTTATTGCATGACCATCAAACAATCTAGTTAAGGTAGCTGTTGAAGCAAGATGTAGCTTGTAATATTAAGATTTCCCGTACTGTCTTGAACTATGATATTACATTTGCATCTTGTATGGACATACAGTGAATGTACGGTCACTTGGTCAAAAAAAAAAGGAAAAAAAA]

[+] EMBL AK059857             [CTTATTTTGAACTGTTATTACTTCCTTTTCAGGATATGGCATGCATGCAGGCCTTTCACCTCAGCGCCAACACAGACCAGAAAACAGAAATTTTGATGATACTTTTGGTCCACGTTATGCTCATGGATATCAAGGTGGTGGTAGAGGAGTCGCGAGGTTCCGGGATGGTTCTCCACCATATGGAAGAGGAGGCAGATCATATGGGAGGGGCTCTGGTGCTCCTGGAAAGGAGTTCATTAATATTGATGGAGAATATGTTCACAGGAATGATCCAAATCTGTCGCCAAGAGAAGGCGATTGGATATGCCAGAATCCCAACTGTGGAAATCTTAATTTTGCTCGGCGAACTCACTGTAACAACTGCAACAAGTATCGCTATTCACGAGAAGTATGTGAGCCTGGCCACAGTCCTCACAGAGATTACGTCAATCCTCCACGTGGACCTGCAAGGAATC TTGGTCCAAGTGATCGGGCCCCTCCAAGAGAGATGGCCAGGTACGGGTCACCACCCCGTGGTTGGGGAAGTGACCCTAAGGGTTATCCAGCTCGATCACCTCCAGATCATGCAGGACGGTATGCAGATCCAGTGCAAAGGGAAAGAATGGGCTTCCGTGGTGATTGTCAGTTGAGGGACCGTGTAAAGCATGACTGGTCTTCAGCTGAAGACTACAACCCAAGGGAGCGCCCACATGATATGTATCTTGAGAGGAGTCGGCGACGATCAGTGTCTCCTCGGGATAACTGGGGGCACAATATGCGGGACCGGAGCAGATCCCCTGCAGGAGGCAGGCTGAAGGGTTCTTTCACAGGTGGAGGTCGACCAGACTTGTATGCTGATCCCTATGCAGGGAGGGGGCGACCCAACAATTTAGATGATGTCCGTGGCCGTGGCCGTGGCCGTGGCCGTGGTTACATACCTGGAGGTGCTACATACCTAGGCAAGGGTCGAGGTGACAGGCGTGCTGCTCCCAGTAGTAGGAATGATGGAAGCTATTAGATCATCATAGTCTTATTGCATGACCATCAAACAATCTAGTTAAGGTAGCTGTTGAAGCAAGATGTAGCTTGTAATATTAAGATTTCCCGTACTGTCTTGAACTATGATATTACATTTGCATC                                                         ]
[+] EMBL C28916               [                              AGGATATGGCATGCATGCAGGCCTTTCACCTCAGCGCCAACACAGACCAGAAAACAGAAATTTTNATGATACTTTTGGTCCACGTTATGCTCATGGATATCAAGGTGGTGGTAGAGGAGTCGCGAGGTTCCGGGATGGTTCTCCACCATATGGAAGAGGAGGCAGATCATATGGGAGGGGCTCTGGTGCTCCTGGAAAGGAGTTCATTAATATTGATGGAGAATATGTTCACAGGAATGATCCAAATCTGTCGCCAAGAGANGGCGATTGGATATGCCAGANTCCCAACTGTGGAAATCTTAATTTTGCTCGGCGAACTCACTGTACCAACTGCAACAAGTATCGCTATTCACGAGAAGTATGTGAGCCTGGCCACAGTCCTCACAGNGATTACGTCAATCCTCCACGTGGACCTGCAAGGAATC TTNGTCCAAGTGATCGGGCCC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL C28778               [                              AGGATATGGCATGCATGCAGGCCTTTCACCTCAGCGCCAACACAGACCAGAAAACAGAAATTTTGATGATACTTTTGGTCCACGTTATGCTCATGGATATCAAGGTGGTGGTAGAGGAGTCGCGAGGTTCCGGGATGGTTCTCCACCATATGGAAGAGGAGGCAGATCATATGGGAGGGGCTCTGGTGCTCCTGGAAAGGAGTTCATTAATATTGATGGAGAATATGTTCACAGGAATGATCCAAATCTGTCGCCAAGAGAAGGCGATTGGATATGCCAGAATCCCAACTGTNGAAATCTTAATTTTGCTCGGCGAACTCACTGTAACAACTGCAACAAGTATCGCTATTCACGAGAAGTATGTGAGCCTNGCCACAGTCCTCACAGAGATTACGTCAATCCTCCACGTNGACCTTCAANGAATCTTTGGTCCAAGT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[-] EMBL CB673053             [                                                                                                                                                                                                                                                                                                                                                                                                          GAGCCTGGCCACAGTCCTCACAGAGATTACGTCAATCCTCCACGTGGACCTGCAAGGAATC TTGGTCCAAGTGATCGGGCCCCTCCAAGAGAGATGGCCAGGTACGGGTCACCACCCCGTGGTTGGGGAAGTGACCCTAAGGGTTATCCAGCTCGATCACCTCCAGATCATGCAGGACGGTATGCAGATCCAGTGCAAAGGGAAAGAATGGGCTTCCGTGGTGATTGTCAGTTGAGGGACCGTGTAAAGCATGACTGGTCTTCAGCTGAAGACTACAACCCAAGGGAGCGCCCACATGATATGTATCTTGAGAGGAGTCGGCGACGATCAGTGTCTCCTCGGGATAACTGGGGGCACAATATGCGGGACCGGAGCAGATCCCCTGCAGGAGGCAGGCTGAAGGGTTCTTTCACAGGTGGAGGTCGACCAGACTTGTATGCTGATCCCTATGCAGGGAGGGGGCGACCCAACAATTTAGATGATGTCCGTGGCCGTGGCCGTGGCCGTGGCCGTGGTTACATACCTGGAGGTGCTACATACCTAGGCAAGGGTCGAGGTGACAGGCGTGCTGCTCCCAGTAGTAGGAATGATGGAAGCTATTAGATCATCATAGTCTTATTGCATGACCATCAAACAATCTAGTTAAGGTAGCTGTTGAAGCAAGATGTAGCTTGTAATATTAAGATTTCCCGTACTGTCTTGAACTATGATATTACATTTGCATCTTGTATGGACATACAGTGAATGTACGGTCACTTGGTCAAAAAAAAAAGG        ]
[+] EMBL AU101006             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               AACCCAAGGGAGCGCCCACATGATATGTATCTTGAGAGGAGTCGGCGACGATCAGTGTCTCCTCGGGATAACTGGGGGCACAATATGCGGGACCGGAGCAGATCCCCTGCAGGAGGCAGGCTGAAGGGTTCTTTCACAGGTGGAGGTCGACCAGACTTGTATGCTGATCCCTATGCAGGGAGGGGGCGACCCAACAATTTAGATGATGTCCGTGGCCGTGGCCGTGGCCGTGGCCGTGGTTACATACCTGGAGGTGCTACATACCTAGGCAAGGGTCGAGGTGACAGGCGTGCTGCTCCCAGTAGTAGGAATGATGGAAGCTATTAGATCATCATAGTCTTATTGCATGACCATCAAACAATCTAGTTAAGGTAGCTGTTGAAGCAANATGTAGCTTGTAATATTAAGATTTCCCGTACTGTCTTGAACTATGATATTACATTTGCATCTTGTATGGACATACAGTGAATGTACGGTCACTTGGTCAAAAAAAAAAAAAAAAAAAA]


>consensus_11109#0 CTTATTTTGAACTGTTATTACTTCCTTTTCAGGATATGGCATGCATGCAGGCCTTTCACC TCAGCGCCAACACAGACCAGAAAACAGAAATTTTGATGATACTTTTGGTCCACGTTATGC TCATGGATATCAAGGTGGTGGTAGAGGAGTCGCGAGGTTCCGGGATGGTTCTCCACCATA TGGAAGAGGAGGCAGATCATATGGGAGGGGCTCTGGTGCTCCTGGAAAGGAGTTCATTAA TATTGATGGAGAATATGTTCACAGGAATGATCCAAATCTGTCGCCAAGAGAAGGCGATTG GATATGCCAGAATCCCAACTGTGGAAATCTTAATTTTGCTCGGCGAACTCACTGTAACAA CTGCAACAAGTATCGCTATTCACGAGAAGTATGTGAGCCTGGCCACAGTCCTCACAGAGA TTACGTCAATCCTCCACGTGGACCTGCAAGGAATCTTGGTCCAAGTGATCGGGCCCCTCC AAGAGAGATGGCCAGGTACGGGTCACCACCCCGTGGTTGGGGAAGTGACCCTAAGGGTTA TCCAGCTCGATCACCTCCAGATCATGCAGGACGGTATGCAGATCCAGTGCAAAGGGAAAG AATGGGCTTCCGTGGTGATTGTCAGTTGAGGGACCGTGTAAAGCATGACTGGTCTTCAGC TGAAGACTACAACCCAAGGGAGCGCCCACATGATATGTATCTTGAGAGGAGTCGGCGACG ATCAGTGTCTCCTCGGGATAACTGGGGGCACAATATGCGGGACCGGAGCAGATCCCCTGC AGGAGGCAGGCTGAAGGGTTCTTTCACAGGTGGAGGTCGACCAGACTTGTATGCTGATCC CTATGCAGGGAGGGGGCGACCCAACAATTTAGATGATGTCCGTGGCCGTGGCCGTGGCCG TGGCCGTGGTTACATACCTGGAGGTGCTACATACCTAGGCAAGGGTCGAGGTGACAGGCG TGCTGCTCCCAGTAGTAGGAATGATGGAAGCTATTAGATCATCATAGTCTTATTGCATGA CCATCAAACAATCTAGTTAAGGTAGCTGTTGAAGCAAGATGTAGCTTGTAATATTAAGAT TTCCCGTACTGTCTTGAACTATGATATTACATTTGCATCTTGTATGGACATACAGTGAAT GTACGGTCACTTGGTCAAAAAAAAAAGGAAAAAAAA



consensusID : consensus_11109#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 714
fasta sequence
                              [CGGGCCCCTCCAAGAGAGATGGCCAGGTACGGGTCACCACCCCGTGGTTGGGGAAGTGACCCTAAGGGTTATCCAGCTCGATCACCTCCAGATCATGCAGGACGGTATGCAGATCCAGTGCAAAGGGAAAGAATGGGCTTCCGTGGTGATTGTCAGTTGAGGGACCGTGTAAAGCATGACTGGTCTTCAGCTGAAGACTACAACCCAAGGGAGCGCCCACATGATATGTATCTTGAGAGGAGTCGGCGACGATCAGTGTCTCCTCGGGATAACTGGGGGCACAATATGCGGGACCGGAGCAGATCCCCTGCAGGAGGCAGGCTGAAGGGTTCTTTCACAGGTGGAGGTCGACCAGACTTGTATGCTGATCCCTATGCAGGGAGGGGGCGACCCAACAATTTAGATGATGTCCGTGGCCGTGGCCGTGGCCGTGGCCGTGGTTACATACCTGGAGGTGCTACATACCTAGGCAAGGGTCGAGGTGACAGGCGTGCTGCTCCCAGTAGTAGGAATGATGGAAGCTATTAGATCATCATAGTCTTATTGCATGACCATCAAACAATCTAGTTAAGGTAGCTGTTGAAGCAAGATGTAGCTTGTAATATTAAGATTTCCCGTACTGTCTTGAACTATGATATTACATTTGCATCTTGTATGGACATACAGTGAAGGTACGGTCACTTGGTCAACATTTTGCTGCTCGAAAAAAAGAGA]

[-] EMBL CB654930             [CGGGCCCCTCCAAGAGAGATGGCCAGGTACGGGTCACCACCCCGTGGTTGGGGAAGTGACCCTAAGGGTTATCCAGCTCGATCACCTCCAGATCATGCAGGACGGTATGCAGATCCAGTGCAAAGGGAAAGAATGGGCTTCCGTGGTGATTGTCAGTTGAGGGACCGTGTAAAGCATGACTGGTCTTCAGCTGAAGACTACAACCCAAGGGAGCGCCCACATGATATGTATCTTGAGAGGAGTCGGCGACGATCAGTGTCTCCTCGGGATAACTGGGGGCACAATATGCGGGACCGGAGCAGATCCCCTGCAGGAGGCAGGCTGAAGGGTTCTTTCACAGGTGGAGGTCGACCAGACTTGTATGCTGATCCCTATGCAGGGAGGGGGCGACCCAACAATTTAGATGATGTCCGTGGCCGTGGCCGTGGCCGTGGCCGTGGTTACATACCTGGAGGTGCTACATACCTAGGCAAGGGTCGAGGTGACAGGCGTGCTGCTCCCAGTAGTAGGAATGATGGAAGCTATTAGATCATCATAGTCTTATTGCATGACCATCAAACAATCTAGTTAAGGTAGCTGTTGAAGCAAGATGTAGCTTGTAATATTAAGATTTCCCGTACTGTCTTGAACTATGATATTACATTTGCATCTTGTATGGACATACAGTGAAGGTACGGTCACTTGGTCAACATTTTGCTGCTCGAAAAAAAGAGA]


>consensus_11109#1 CGGGCCCCTCCAAGAGAGATGGCCAGGTACGGGTCACCACCCCGTGGTTGGGGAAGTGAC CCTAAGGGTTATCCAGCTCGATCACCTCCAGATCATGCAGGACGGTATGCAGATCCAGTG CAAAGGGAAAGAATGGGCTTCCGTGGTGATTGTCAGTTGAGGGACCGTGTAAAGCATGAC TGGTCTTCAGCTGAAGACTACAACCCAAGGGAGCGCCCACATGATATGTATCTTGAGAGG AGTCGGCGACGATCAGTGTCTCCTCGGGATAACTGGGGGCACAATATGCGGGACCGGAGC AGATCCCCTGCAGGAGGCAGGCTGAAGGGTTCTTTCACAGGTGGAGGTCGACCAGACTTG TATGCTGATCCCTATGCAGGGAGGGGGCGACCCAACAATTTAGATGATGTCCGTGGCCGT GGCCGTGGCCGTGGCCGTGGTTACATACCTGGAGGTGCTACATACCTAGGCAAGGGTCGA GGTGACAGGCGTGCTGCTCCCAGTAGTAGGAATGATGGAAGCTATTAGATCATCATAGTC TTATTGCATGACCATCAAACAATCTAGTTAAGGTAGCTGTTGAAGCAAGATGTAGCTTGT AATATTAAGATTTCCCGTACTGTCTTGAACTATGATATTACATTTGCATCTTGTATGGAC ATACAGTGAAGGTACGGTCACTTGGTCAACATTTTGCTGCTCGAAAAAAAGAGA



consensusID : consensus_11109#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 664
fasta sequence
                              [CCCAGCCAAGGGGAAAGAATGGGCTTCCCGTGGTGATTGTCAATTGTGGCTCCGTTTAAAGCATGACTGGTTTTCAGCTGAAGGTTTCAACCCAAGGGAGCGCCCCCCTGATATGTATCTTTAGAGGAGTCGGCGCCCCTCAGTGTCTCCTCGGGATAACTGGGGGCCCAATATTCGGGTCCGGAGCAGATTCCCTGCAGGAGGCAGGTTGAAGGGTTTTTTCTCCGGTGGAGGTCGCCCAGACTTGTATGCTGTTCCCTATGCAGGGAGGGGGCGACCCAACAAATTAGCTTATGTTCGTGGTAATGGCCGTGGCCGGGGCCGTGACCGTGGTTACATACCTGGAGGTGATGCATTCCTAGGCAAGGGTCTCAGGTTCAGCGCGTGCTGCTCCCCGTTGTAGGAATGATGGAAGCTATTAGGTCATCATAGTCTTATTGCATGGCCCTCAAACAATTTAGTTAAGGTAACTGTTGAAGCCACATGTAGCTTGTAATATTAAGGTTCCCCGGACTGTCTTGAACTATGATATTACATTTGCATTTTGTATGGGCATTCAGTGAAGGTACGGTCCCTTGGTCAACATTTTGCTGCTAGTGGTAAAAGTTTATGCGTTTGTCCTTTAAAAAAAAAAAAAAAAAAAGAAAAGTAAAAAAAAAAAAAA]

[-] EMBL CA761740             [CCCAGCCAAGGGGAAAGAATGGGCTTCCCGTGGTGATTGTCAATTGTGGCTCCGTTTAAAGCATGACTGGTTTTCAGCTGAAGGTTTCAACCCAAGGGAGCGCCCCCCTGATATGTATCTTTAGAGGAGTCGGCGCCCCTCAGTGTCTCCTCGGGATAACTGGGGGCCCAATATTCGGGTCCGGAGCAGATTCCCTGCAGGAGGCAGGTTGAAGGGTTTTTTCTCCGGTGGAGGTCGCCCAGACTTGTATGCTGTTCCCTATGCAGGGAGGGGGCGACCCAACAAATTAGCTTATGTTCGTGGTAATGGCCGTGGCCGGGGCCGTGACCGTGGTTACATACCTGGAGGTGATGCATTCCTAGGCAAGGGTCTCAGGTTCAGCGCGTGCTGCTCCCCGTTGTAGGAATGATGGAAGCTATTAGGTCATCATAGTCTTATTGCATGGCCCTCAAACAATTTAGTTAAGGTAACTGTTGAAGCCACATGTAGCTTGTAATATTAAGGTTCCCCGGACTGTCTTGAACTATGATATTACATTTGCATTTTGTATGGGCATTCAGTGAAGGTACGGTCCCTTGGTCAACATTTTGCTGCTAGTGGTAAAAGTTTATGCGTTTGTCCTTTAAAAAAAAAAAAAAAAAAAGAAAAGTAAAAAAAAAAAAAA]


>consensus_11109#2 CCCAGCCAAGGGGAAAGAATGGGCTTCCCGTGGTGATTGTCAATTGTGGCTCCGTTTAAA GCATGACTGGTTTTCAGCTGAAGGTTTCAACCCAAGGGAGCGCCCCCCTGATATGTATCT TTAGAGGAGTCGGCGCCCCTCAGTGTCTCCTCGGGATAACTGGGGGCCCAATATTCGGGT CCGGAGCAGATTCCCTGCAGGAGGCAGGTTGAAGGGTTTTTTCTCCGGTGGAGGTCGCCC AGACTTGTATGCTGTTCCCTATGCAGGGAGGGGGCGACCCAACAAATTAGCTTATGTTCG TGGTAATGGCCGTGGCCGGGGCCGTGACCGTGGTTACATACCTGGAGGTGATGCATTCCT AGGCAAGGGTCTCAGGTTCAGCGCGTGCTGCTCCCCGTTGTAGGAATGATGGAAGCTATT AGGTCATCATAGTCTTATTGCATGGCCCTCAAACAATTTAGTTAAGGTAACTGTTGAAGC CACATGTAGCTTGTAATATTAAGGTTCCCCGGACTGTCTTGAACTATGATATTACATTTG CATTTTGTATGGGCATTCAGTGAAGGTACGGTCCCTTGGTCAACATTTTGCTGCTAGTGG TAAAAGTTTATGCGTTTGTCCTTTAAAAAAAAAAAAAAAAAAAGAAAAGTAAAAAAAAAA AAAA



consensusID : consensus_11109#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 347
fasta sequence
                              [AGTTGAAGGCGACCGTGTAAAGCATGACTGGTCTTCAGCTGAAGACTACAACCCAAGGGGAGCGCCCACATGATATGTATCTTGAAGANGANTCGGCGGCGATCAGTGTCTTCTCNGGATAACTGGGGGCACANTATGCGGGACCGGANCACATCCCCTGCANGAAGCANGCTGAAAGGTTCTTTCNCANGTGGAAGTCCACCANACTTGTTTGCTGATCCTATGCNCGGAGGGGGCGACCCAACAATTTANATNATATCCGTGGTCNTGGCCCGTGGCCGTGGCCGTGGCCGTGGTTNCCTACCTGNANGTGCTACATACCTANGCNNNGGTCCAAGTGACANGCG]

[+] EMBL BE228531             [AGTTGAAGGCGACCGTGTAAAGCATGACTGGTCTTCAGCTGAAGACTACAACCCAAGGGGAGCGCCCACATGATATGTATCTTGAAGANGANTCGGCGGCGATCAGTGTCTTCTCNGGATAACTGGGGGCACANTATGCGGGACCGGANCACATCCCCTGCANGAAGCANGCTGAAAGGTTCTTTCNCANGTGGAAGTCCACCANACTTGTTTGCTGATCCTATGCNCGGAGGGGGCGACCCAACAATTTANATNATATCCGTGGTCNTGGCCCGTGGCCGTGGCCGTGGCCGTGGTTNCCTACCTGNANGTGCTACATACCTANGCNNNGGTCCAAGTGACANGCG]


>consensus_11109#3 AGTTGAAGGCGACCGTGTAAAGCATGACTGGTCTTCAGCTGAAGACTACAACCCAAGGGG AGCGCCCACATGATATGTATCTTGAAGANGANTCGGCGGCGATCAGTGTCTTCTCNGGAT AACTGGGGGCACANTATGCGGGACCGGANCACATCCCCTGCANGAAGCANGCTGAAAGGT TCTTTCNCANGTGGAAGTCCACCANACTTGTTTGCTGATCCTATGCNCGGAGGGGGCGAC CCAACAATTTANATNATATCCGTGGTCNTGGCCCGTGGCCGTGGCCGTGGCCGTGGTTNC CTACCTGNANGTGCTACATACCTANGCNNNGGTCCAAGTGACANGCG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_11109#0      CTTATTTTGAACTGTTATTACTTCCTTTTCAGGATATGGCATGCATGCAGGCCTTTCACC 60
consensus_11109#1      ------------------------------------------------------------
consensus_11109#3      ------------------------------------------------------------
consensus_11109#2      ------------------------------------------------------------
                                                                                   

consensus_11109#0      TCAGCGCCAACACAGACCAGAAAACAGAAATTTTGATGATACTTTTGGTCCACGTTATGC 120
consensus_11109#1      ------------------------------------------------------------
consensus_11109#3      ------------------------------------------------------------
consensus_11109#2      ------------------------------------------------------------
                                                                                   

consensus_11109#0      TCATGGATATCAAGGTGGTGGTAGAGGAGTCGCGAGGTTCCGGGATGGTTCTCCACCATA 180
consensus_11109#1      ------------------------------------------------------------
consensus_11109#3      ------------------------------------------------------------
consensus_11109#2      ------------------------------------------------------------
                                                                                   

consensus_11109#0      TGGAAGAGGAGGCAGATCATATGGGAGGGGCTCTGGTGCTCCTGGAAAGGAGTTCATTAA 240
consensus_11109#1      ------------------------------------------------------------
consensus_11109#3      ------------------------------------------------------------
consensus_11109#2      ------------------------------------------------------------
                                                                                   

consensus_11109#0      TATTGATGGAGAATATGTTCACAGGAATGATCCAAATCTGTCGCCAAGAGAAGGCGATTG 300
consensus_11109#1      ------------------------------------------------------------
consensus_11109#3      ------------------------------------------------------------
consensus_11109#2      ------------------------------------------------------------
                                                                                   

consensus_11109#0      GATATGCCAGAATCCCAACTGTGGAAATCTTAATTTTGCTCGGCGAACTCACTGTAACAA 360
consensus_11109#1      ------------------------------------------------------------
consensus_11109#3      ------------------------------------------------------------
consensus_11109#2      ------------------------------------------------------------
                                                                                   

consensus_11109#0      CTGCAACAAGTATCGCTATTCACGAGAAGTATGTGAGCCTGGCCACAGTCCTCACAGAGA 420
consensus_11109#1      ------------------------------------------------------------
consensus_11109#3      ------------------------------------------------------------
consensus_11109#2      ------------------------------------------------------------
                                                                                   

consensus_11109#0      TTACGTCAATCCTCCACGTGGACCTGCAAGGAATCTTGGTCCAAGTGATCGGGCCCCTCC 480
consensus_11109#1      -------------------------------------------------CGGGCCCCTCC 11
consensus_11109#3      ------------------------------------------------------------
consensus_11109#2      ------------------------------------------------------------
                                                                                   

consensus_11109#0      AAGAGAGATGGCCAGGTACGGGTCACCACCCCGTGGTTGGGGAAGTGACCCTAAGGGTTA 540
consensus_11109#1      AAGAGAGATGGCCAGGTACGGGTCACCACCCCGTGGTTGGGGAAGTGACCCTAAGGGTTA 71
consensus_11109#3      ------------------------------------------------------------
consensus_11109#2      ------------------------------------------------------------
                                                                                   

consensus_11109#0      TCCAGCTCGATCACCTCCAGATCATGCAGGACGGTATGCAGATCCAGTGCAAAGGGAAAG 600
consensus_11109#1      TCCAGCTCGATCACCTCCAGATCATGCAGGACGGTATGCAGATCCAGTGCAAAGGGAAAG 131
consensus_11109#3      ------------------------------------------------------------
consensus_11109#2      -------------------------------------------CCCAGCCAAGGGGAAAG 17
                                                                                   

consensus_11109#0      AATGGGCTTCC-GTGGTGATTGTCAGTTGAGGG--ACCGTGTAAAGCATGACTGGTCTTC 657
consensus_11109#1      AATGGGCTTCC-GTGGTGATTGTCAGTTGAGGG--ACCGTGTAAAGCATGACTGGTCTTC 188
consensus_11109#3      ------------------------AGTTGAAGGCGACCGTGTAAAGCATGACTGGTCTTC 36
consensus_11109#2      AATGGGCTTCCCGTGGTGATTGTCAATTGTGGC--TCCGTTTAAAGCATGACTGGTTTTC 75
                                               * ***  *    **** *************** ***

consensus_11109#0      AGCTGAAGACTACAACCCAAGGG-AGCGCCCACATGATATGTATCTTGA-GAGGAGTCGG 715
consensus_11109#1      AGCTGAAGACTACAACCCAAGGG-AGCGCCCACATGATATGTATCTTGA-GAGGAGTCGG 246
consensus_11109#3      AGCTGAAGACTACAACCCAAGGGGAGCGCCCACATGATATGTATCTTGAAGANGANTCGG 96
consensus_11109#2      AGCTGAAGGTTTCAACCCAAGGG-AGCGCCCCCCTGATATGTATCTTTA-GAGGAGTCGG 133
                       ********  * *********** ******* * ************* * ** ** ****

consensus_11109#0      CGACGATCAGTGTCTCCTCGGGATAACTGGGGGCACAATATGCGGGACCGGAGCAGATCC 775
consensus_11109#1      CGACGATCAGTGTCTCCTCGGGATAACTGGGGGCACAATATGCGGGACCGGAGCAGATCC 306
consensus_11109#3      CGGCGATCAGTGTCTTCTCNGGATAACTGGGGGCACANTATGCGGGACCGGANCACATCC 156
consensus_11109#2      CGCCCCTCAGTGTCTCCTCGGGATAACTGGGGGCCCAATATTCGGGTCCGGAGCAGATTC 193
                       ** *  ********* *** ************** ** *** **** ***** ** ** *

consensus_11109#0      CCTGCAGGAGGCAGGCTGAAGGGTTCTTTCACAGGTGGAGGTCGACCAGACTTGTATGCT 835
consensus_11109#1      CCTGCAGGAGGCAGGCTGAAGGGTTCTTTCACAGGTGGAGGTCGACCAGACTTGTATGCT 366
consensus_11109#3      CCTGCANGAAGCANGCTGAAAGGTTCTTTCNCANGTGGAAGTCCACCANACTTGTTTGCT 216
consensus_11109#2      CCTGCAGGAGGCAGGTTGAAGGGTTTTTTCTCCGGTGGAGGTCGCCCAGACTTGTATGCT 253
                       ****** ** *** * **** **** **** *  ***** ***  *** ****** ****

consensus_11109#0      GATCCCTATGCAGGGAGGGGGCGACCCAACAATTTAGATGATGTCCGTGG-------CCG 888
consensus_11109#1      GATCCCTATGCAGGGAGGGGGCGACCCAACAATTTAGATGATGTCCGTGG-------CCG 419
consensus_11109#3      GATCC-TATGCNCGGAGGGGGCGACCCAACAATTTANATNATATCCGTGGTCNTGGCCCG 275
consensus_11109#2      GTTCCCTATGCAGGGAGGGGGCGACCCAACAAATTAGCTTATGTTCGTGGTAATGG-CCG 312
                       * *** *****  ******************* ***  * ** * *****       ***

consensus_11109#0      TGGCCGTGGCCGTGGCCGTGGTTACATACCTGGAGGTGCTACATACCTAGGCAAGGGTC- 947
consensus_11109#1      TGGCCGTGGCCGTGGCCGTGGTTACATACCTGGAGGTGCTACATACCTAGGCAAGGGTC- 478
consensus_11109#3      TGGCCGTGGCCGTGGCCGTGGTTNCCTACCTGNANGTGCTACATACCTANGCNNNGGTC- 334
consensus_11109#2      TGGCCGGGGCCGTGACCGTGGTTACATACCTGGAGGTGATGCATTCCTAGGCAAGGGTCT 372
                       ****** ******* ******** * ****** * *** * *** **** **   **** 

consensus_11109#0      GAGGTGACAGGCGTGCTGCTCCCAGTAGTAGGAATGATGGAAGCTATTAGATCATCATAG 1007
consensus_11109#1      GAGGTGACAGGCGTGCTGCTCCCAGTAGTAGGAATGATGGAAGCTATTAGATCATCATAG 538
consensus_11109#3      CAAGTGACANGCG----------------------------------------------- 347
consensus_11109#2      CAGGTTCAGCGCGTGCTGCTCCCCGTTGTAGGAATGATGGAAGCTATTAGGTCATCATAG 432
                        * **     ***                                               

consensus_11109#0      TCTTATTGCATGACCATCAAACAATCTAGTTAAGGTAGCTGTTGAAGCAAGATGTAGCTT 1067
consensus_11109#1      TCTTATTGCATGACCATCAAACAATCTAGTTAAGGTAGCTGTTGAAGCAAGATGTAGCTT 598
consensus_11109#3      ------------------------------------------------------------
consensus_11109#2      TCTTATTGCATGGCCCTCAAACAATTTAGTTAAGGTAACTGTTGAAGCCACATGTAGCTT 492
                                                                                   

consensus_11109#0      GTAATATTAAGATTTCCCGTACTGTCTTGAACTATGATATTACATTTGCATCTTGTATGG 1127
consensus_11109#1      GTAATATTAAGATTTCCCGTACTGTCTTGAACTATGATATTACATTTGCATCTTGTATGG 658
consensus_11109#3      ------------------------------------------------------------
consensus_11109#2      GTAATATTAAGGTTCCCCGGACTGTCTTGAACTATGATATTACATTTGCATTTTGTATGG 552
                                                                                   

consensus_11109#0      ACATACAGTGAATGTACGGTCACTTGGTCAAAA----AAAAAAGGAAAAAAAA------- 1176
consensus_11109#1      ACATACAGTGAAGGTACGGTCACTTGGTCAACATTTTGCTGCTCGAAAAAAAGAGA---- 714
consensus_11109#3      ------------------------------------------------------------
consensus_11109#2      GCATTCAGTGAAGGTACGGTCCCTTGGTCAACATTTTGCTGCTAGTGGTAAAAGTTTATG 612
                                                                                   

consensus_11109#0      ----------------------------------------------------
consensus_11109#1      ----------------------------------------------------
consensus_11109#3      ----------------------------------------------------
consensus_11109#2      CGTTTGTCCTTTAAAAAAAAAAAAAAAAAAAGAAAAGTAAAAAAAAAAAAAA 664
                                                                           




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)