These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11113#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 3125 fasta sequence [CTTCTTTCTTTTTTCCCCCTCGCCATAGGCGCCCTGTGCTTTGCTCGCTCGCTGCTTTTCTCTTTCTTAAAAGGCTGCTCCCTCACTCACAACTCCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCTCACCTCTTCTTGTTCTTCTTCTCTCTCTCTTGTCACTCATCATCATCACTCTTCAGCTTGCTTGGTTGGTTGGTGGAGCTTGGGAGTTGAGGTCAAATAGCCATCGATACACACTCCTCTTTCTTTTCTCTCTTCATTTCTTTCTTTACATCGTCTCTTTCTTGATTTCCCAATCTACTAAGCTCCTACTAGCTCTGTGCTCTGCTGCTTCCTCCCATCCATGGCGGCGGTTGCCAGCGACCCACCTACCTACAAGTAGCTTAAGCTCAAGCTCAGCTCAGATCGGAGAGGGGTGGTAGAGGTAGTAGCAGTAGTTGAGAGAGAGAGTGAGGATGGAGAGCAGATGGAGGAAGGCCAAGATGTCGCTGGGGCTCAACCTCTGCGTCTACGTGCCCAGGACGCTGGACGACGGCGACTCGCCGTCCACCGGGTCGTCCACGGCGGCGCTGGTGTCGCCGGTGGCGTCCTCGTCGTCGGCGGCGACCAGCGCCAACACCACGCCCACGGCGGAGCAGAGGGTCAAGGGCGCCGGCGCGCTCATGCCGACCACCCCGACGCCGACCTCCGCCGGACTTCGCCTCTCCAAATCCGGCAGCAAATCCTTCAAGAAAACATGTGCGATATGTTTGACCACAATGAAGCCTGGTCAGGGCCATGCTCTATTCACAGCAGAGTGCTCACATACCTTTCACTTCCATTGTATAGCTGCAAATGTTAAGCATGGAAGCAACAATTGCCCAGTTTGCCGCACCAAGTGGAAGGAACTCCCATTTCGAGGTCCCTTGCCTGGTGAATTTCCTCAAGGAAGTGCAAGGATTAATCCAGTTAATGGGCACCAAAATGGCGGGCAGATGACCATACTGCGACCACTTCCCCGTGCTCGTTCTTCTGGTCGGCTGCATCATATGACATCGTTGTTGCCTGACACTGACCGTAGTATTTTTAACGATGATGAACCCTTGGACTCACTGTCTGAAGCAAATGAAGGCTCGCAGCAGGGGTGTTTAAGAACAGTGGAAATAAAGACATATCCTGAGTTCACTGAAGTTCCAGAAAGTACTTCAGAAAGAAATTTTACAGTCCTAGTTCATCTAAAGGCACCCCTTGCTCAGACTTTGCAAACAAGCAGCAAACTTGAAGATGGCAATAGCTTGGGCACAACTCGAGCCCCTGTTGATCTCATCACAGTGCTTGATGTCAGTGGGAGCATGGCTGGTACCAAACTTGCATTGCTGAAAAGAGCCATGGGATTTGTCATTCAGAACCTTGGCTCCTCAGATCGGCTTTCTGTAATTGCCTTCTCATCATCTGCACGTAGACTCTTCCCCCTCCGTCGGATGACTGAGACTGGTCGTCAGCAAAGCTTGCAAGCTGTTTATTCACTGACATCAAATGGTGGGACCAATATTGCTGAGGGCCTGAGGAAAGGCTCCAAAGTGATTGAAGATCGACAGGCCAAGAATCCAGTGTGCAGCATCATCCTACTATCAGATGGGCAAGATACATATACAGTCTCACCAACCGCTGGTGTACACAAAGCAGCACCAGAGTACTGCTCACTCCTGCCATATACTAGTAATGGTTGTCAACAGGTACCAGTTCATGTCTTTGGATTTGGTGCTGACCATGATTCAGTCTCGCTGCATTCAATCTCACAAACCTCCGGGGGCACCTTTTCATTCATAGAGACAGAGGCTGCCATCCAAGATGCATTTGCCCAGTGTATTGGTGGACTCTTGAGTGTTGTTGCACAGGATTTGCATGTAAAGGTGGAGAGCCTCCACCCTGATGTACACTTTGGCTCGATCAGATCAGGAAGCTATTCTAGCAGACTTGCAGATGACAAGAGGAATGGCTCCATAGATGTTGGTGACATGTATGCCGAAGAGGAGAGGGATTTCCTTATGTCAGTAAATGTTCCCCCAGGTTACGGTGAAACAGCACTTCTCAAAGTTGGCTGTGTCTACAAAGATCCACTGATGAAGGAGACTATCAATATGGCTGATGTGCAAGTCAAGATCTCTAGACCAGCATTCGTCTCAGTACAAAGCGTGTCAATCGAGGTGGACCGACAAAAGAACCGTCTTCATGCAGCTGAAGTCATGGCTGAAGCAAGGTTGTCTGCCGAGCGTGGTGACCTGACACATGCTGTTTCCTTACTCGAAGACTGCCGGAGGATGATCATGGGGTCAACATCAGGACAATCCGGTGATCGGTTGTGCCAAGCATTGGATGCTGAGCTGAAGGAGATGCAAGAAAGGATGGCCAATCGCCAAAGGTACGAAGCATCAGGCCGCGCCTATGTCCTCTCCGGCTTGAGCTCACACTCATGGCAGAGAGCAACTGCGCGAGGTGACTCCACAGACAGCGAGAGCCTAATCCAGGCCTACCAGACTTCATCCATGGTCGACATGCTGCTGCGCTCGCAGACAATGAGCCGCTCCTCAACCCCTCCACAGATGAGGCATGTGAAGTCGTTTCCAGCGCGCCCGCAGCCTAGGTAACTGCAATTTCTAGTGTTTGGCAACGCCAATAAGGATGGGTTTTGCTAAAGCCTAGATGTGAATTTGGTGAAAGTAGTAGTGTCAGTTGAATTCTTGGTTTTGTGGCGGGAGGACGGGACGGGGGTATAGTTTGTGTGGTATAAGGGGGATTTTAACGGTGTAAATTAATTTGGGTGTGGTGGGGGTAAAAGGGAAAAAGAATCTGTATTTGGGAGAAGGATGGTATAAGAGTTGGGGAAATGGGGTAAGATAGGGTGGCTATTA-TTTTTTTTTTCCTTCTTGTTGGTTACCTGGTATACTCCCAGTATTGTACTAGTAGCTCTCCTCTCTCCTTTGTGTGGTGATGTACATAAAGAGAAGGGTATACATTTGTGAACTGGAATGTGGTTGAGGATGGGGATGGATACCTAATCCCTTTGCAAGGCTTGGCTTGCCTCTTCCTGGAAATTGAAAATTCTGATCATGGCCTCTAAAAAAAAAAAAAAA] [+] EMBL AK072167 [CTTCTTTCTTTTTTCCCCCTCGCCATAGGCGCCCTGTGCTTTGCTCGCTCGCTGCTTTTCTCTTTCTTAAAAGGCTGCTCCCTCACTCACAACTCCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCTCACCTCTTCTTGTTCTTCTTCTCTCTCTCTTGTCACTCATCATCATCACTCTTCAGCTTGCTTGGTTGGTTGGTGGAGCTTGGGAGTTGAGGTCAAATAGCCATCGATACACACTCCTCTTTCTTTTCTCTCTTCATTTCTTTCTTTACATCGTCTCTTTCTTGATTTCCCAATCTACTAAGCTCCTACTAGCTCTGTGCTCTGCTGCTTCCTCCCATCCATGGCGGCGGTTGCCAGCGACCCACCTACCTACAAGTAGCTTAAGCTCAAGCTCAGCTCAGATCGGAGAGGGGTGGTAGAGGTAGTAGCAGTAGTTGAGAGAGAGAGTGAGGATGGAGAGCAGATGGAGGAAGGCCAAGATGTCGCTGGGGCTCAACCTCTGCGTCTACGTGCCCAGGACGCTGGACGACGGCGACTCGCCGTCCACCGGGTCGTCCACGGCGGCGCTGGTGTCGCCGGTGGCGTCCTCGTCGTCGGCGGCGACCAGCGCCAACACCACGCCCACGGCGGAGCAGAGGGTCAAGGGCGCCGGCGCGCTCATGCCGACCACCCCGACGCCGACCTCCGCCGGACTTCGCCTCTCCAAATCCGGCAGCAAATCCTTCAAGAAAACATGTGCGATATGTTTGACCACAATGAAGCCTGGTCAGGGCCATGCTCTATTCACAGCAGAGTGCTCACATACCTTTCACTTCCATTGTATAGCTGCAAATGTTAAGCATGGAAGCAACAATTGCCCAGTTTGCCGCACCAAGTGGAAGGAACTCCCATTTCGAGGTCCCTTGCCTGGTGAATTTCCTCAAGGAAGTGCAAGGATTAATCCAGTTAATGGGCACCAAAATGGCGGGCAGATGACCATACTGCGACCACTTCCCCGTGCTCGTTCTTCTGGTCGGCTGCATCATATGACATCGTTGTTGCCTGACACTGACCGTAGTATTTTTAACGATGATGAACCCTTGGACTCACTGTCTGAAGCAAATGAAGGCTCGCAGCAGGGGTGTTTAAGAACAGTGGAAATAAAGACATATCCTGAGTTCACTGAAGTTCCAGAAAGTACTTCAGAAAGAAATTTTACAGTCCTAGTTCATCTAAAGGCACCCCTTGCTCAGACTTTGCAAACAAGCAGCAAACTTGAAGATGGCAATAGCTTGGGCACAACTCGAGCCCCTGTTGATCTCATCACAGTGCTTGATGTCAGTGGGAGCATGGCTGGTACCAAACTTGCATTGCTGAAAAGAGCCATGGGATTTGTCATTCAGAACCTTGGCTCCTCAGATCGGCTTTCTGTAATTGCCTTCTCATCATCTGCACGTAGACTCTTCCCCCTCCGTCGGATGACTGAGACTGGTCGTCAGCAAAGCTTGCAAGCTGTTTATTCACTGACATCAAATGGTGGGACCAATATTGCTGAGGGCCTGAGGAAAGGCTCCAAAGTGATTGAAGATCGACAGGCCAAGAATCCAGTGTGCAGCATCATCCTACTATCAGATGGGCAAGATACATATACAGTCTCACCAACCGCTGGTGTACACAAAGCAGCACCAGAGTACTGCTCACTCCTGCCATATACTAGTAATGGTTGTCAACAGGTACCAGTTCATGTCTTTGGATTTGGTGCTGACCATGATTCAGTCTCGCTGCATTCAATCTCACAAACCTCCGGGGGCACCTTTTCATTCATAGAGACAGAGGCTGCCATCCAAGATGCATTTGCCCAGTGTATTGGTGGACTCTTGAGTGTTGTTGCACAGGATTTGCATGTAAAGGTGGAGAGCCTCCACCCTGATGTACACTTTGGCTCGATCAGATCAGGAAGCTATTCTAGCAGACTTGCAGATGACAAGAGGAATGGCTCCATAGATGTTGGTGACATGTATGCCGAAGAGGAGAGGGATTTCCTTATGTCAGTAAATGTTCCCCCAGGTTACGGTGAAACAGCACTTCTCAAAGTTGGCTGTGTCTACAAAGATCCACTGATGAAGGAGACTATCAATATGGCTGATGTGCAAGTCAAGATCTCTAGACCAGCATTCGTCTCAGTACAAAGCGTGTCAATCGAGGTGGACCGACAAAAGAACCGTCTTCATGCAGCTGAAGTCATGGCTGAAGCAAGGTTGTCTGCCGAGCGTGGTGACCTGACACATGCTGTTTCCTTACTCGAAGACTGCCGGAGGATGATCATGGGGTCAACATCAGGACAATCCGGTGATCGGTTGTGCCAAGCATTGGATGCTGAGCTGAAGGAGATGCAAGAAAGGATGGCCAATCGCCAAAGGTACGAAGCATCAGGCCGCGCCTATGTCCTCTCCGGCTTGAGCTCACACTCATGGCAGAGAGCAACTGCGCGAGGTGACTCCACAGACAGCGAGAGCCTAATCCAGGCCTACCAGACTTCATCCATGGTCGACATGCTGCTGCGCTCGCAGACAATGAGCCGCTCCTCAACCCCTCCACAGATGAGGCATGTGAAGTCGTTTCCAGCGCGCCCGCAGCCTAGGTAACTGCAATTTCTAGTGTTTGGCAACGCCAATAAGGATGGGTTTTGCTAAAGCCTAGATGTGAATTTGGTGAAAGTAGTAGTGTCAGTTGAATTCTTGGTTTTGTGGCGGGAGGACGGGACGGGGGTATAGTTTGTGTGGTATAAGGGGGATTTTAACGGTGTAAATTAATTTGGGTGTGGTGGGGGTAAAAGGGAAAAAGAATCTGTATTTGGGAGAAGGATGGTATAAGAGTTGGGGAAATGGGGTAAGATAGGGTGGCTATTA TTTTTTTTTTCCTTCTTGTTGGTTACCTGGTATACTCCCAGTATTGTACTAGTAGCTCTCCTCTCTCATTTGTGTGGTGATGTACATAAAGAGAAGGGTATACATTTGTGAACTGGAATGTGGTTGAGGATGGGGATGGATACCTA ] [+] EMBL CB655432 [ CCCCGCCCTCGTTCTTCTGGTCGGCTGCATCATATGACATCGTTGTTGCCTGACACTGACCGTAGTATTTTTAACGATGATGAACCCTTGGACTCACTGTCTGAAGCAAATGAAGGCTCGCAGCAGGGGTGTTTAAGAACAGTGGAAATAAAGACATATCCTGAGTTCACTGAAGTTCCAGAAAGTACTTCAGAAAGAAATTTTACAGTCCTAGTTCATCTAAAGGCACCCCTTGCTCAGACTTTGCAAACAAGCAGCAAACTTGAAGATGGCAATAGCTTGGGCACAACTCGAGCCCCTGTTGATCTCATCACAGTGCTTGATGTCAGTGGGAGCATGGCTGGTACCAAACTTGCATTGCTGAAAAGAGCCATGGGATTTGTCATTCAGAACCTTGGCTCCTCAGATCGGCTTTCTGTAATTGCCTTCTCATCATCTGCACGTAGACTCTTCCCCCTCCGTCGGATGACTGAGACTGGTCGTCAGCAAAGCTTGCAAGCTGTTTATTCACTGACATCAAATGGTGGGACCAATATTGCTGAGGGCCTGAGGAAAGGCTCCAAAGTGATTGAAGATCGACAGGCCAAGAATCCAGTGTGCAGCATCATCCTACTATCAGATGGGCAAGATACATATACAGTCTCACCAACCGCTGGTGTACACAAAGCAGCACCAGAGTACTGCTCACTCCTGCCATATACTAGTAATGGTTGTCAACAGGTACCAGTTCATGTCTTTGGATTTGGTGCTGACCATGATTCAGTCTCGC ] [-] EMBL CB655433 [ CTGAAGCAAGGTTGTCTGCCGAGCGTGGTGACCTGACACATGCTGTTTCCTTACTCGAAGACTGCCGGAGGATGATCATGGGGTCAACATCAGGACAATCCGGTGATCGGTTGTGCCAAGCATTGGATGCTGAGCTGAAGGAGATGCAAGAAAGGATGGCCAATCGCCAAAGGTACGAAGCATCAGGCCGCGCCTATGTCCTCTCCGGCTTGAGCTCACACTCATGGCAGAGAGCAACTGCGCGAGGTGACTCCACAGACAGCGAGAGCCTAATCCAGGCCTACCAGACTTCATCCATGGTCGACATGCTGCTGCGCTCGCAGACAATGAGCCGCTCCTCAACCCCTCCACAGATGAGGCATGTGAAGTCGTTTCCAGCGCGCCCGCAGCCTAGGTAACTGCAATTTCTAGTGTTTGGCAACGCCAATAAGGATGGGTTTTGCTAAAGCCTAGATGTGAATTTGGTGAAAGTAGTAGTGTCAGTTGAATTCTTGGTTTTGTGGCGGGAGGACGGGACGGGGGTATAGTTTGTGTGGTATAAGGGGGATTTTAACGGTGTAAATTAATTTGGGTGTGGTGGGGGTAAAAGGGAAAAAGAATCTGTATTTGGGAGAAGGATGGTATAAGAGTTGGGGAAATGGGGTAAGATAGGGTGGCTATTATTTTTTTTTTTCCTTCTTGTTGGTTACCTGGTATACTCCCAGTATTGTACTAGTAGCTCTCCTCTCTCCTTTGTGAGGGGATGTACATAAAGAGAAGGGTATACA TTGTGAAaaaaaaga ] [-] EMBL CA759075 [ GCAGAGAGCAACTGCGCGAGGTGACTTCACAGACAGCGAGAGCCTAATCCAGGCCTACCAGACTTCATCCATGGTCGACATGNTGCTGCGCTCGCAAACAATGAGCCGCTCCTCAACCCCTCGACAGATGAGGCATGTGAAGTCGTTTCCAGCGCGCCCGCAGCCTAGGTAACTGCAATTTCTAGTGTTAGGCAACGCCAATAAGGATGGGTTTTGCTAAAGCCTAGATGTGAATTTGGTGAAAGTAGTAGTGTCAGTTGAATTCTTGGTTTTGTGGCGGGAGGACGGGACGGGGGTATAGTTTGTGTGGTATAAGGGGGATTTTAACGGTGTAAATTAATTTGGGTGTGGTGGGGGTAAAAGGGAAAAAGAATCTGTATTTGGGAGAAGGATGGTATAAGAGTTGGGGAAATGGGGTAAGATAGGGTGGCTATTA TATTTTTTTTCTTTCTTGTTGGTTACCTGGTATACTCCCAGTATTGTACTAGTAGCTCTCCTCTCTCCTTTGTGTGGTGATGTACATAAAGAGAAGGGTATACATTTGTGAACTGGAATGTGGTTGAGGATGGGGATGGATACCTAATCCCTTTGCAAGGCTTGGCTTGCCTCTTCCTGGAAATTGAAAATTCTGATCATGGCCTCTAAAAAAAAAAAAAAA] [-] EMBL CA759074 [ GCAGAGAGCAACTGCGCGAGGTGACTTCACAGACAGCGAGAGCCTAATCCAGGCCTACCAGACTTCATCCATGGTCGACATGNTGCTGCGCTCGCAAACAATGAGCCGCTCCTCAACCCCTCGACAGATGAGGCATGTGAAGTCGTTTCCAGCGCGCCCGCAGCCTAGGTAACTGCAATTTCTAGTGTTAGGCAACGCCAATAAGGATGGGTTTTGCTAAAGCCTAGATGTGAATTTGGTGAAAGTAGTAGTGTCAGTTGAATTCTTGGTTTTGTGGCGGGAGGACGGGACGGGGGTATAGTTTGTGTGGTATAAGGGGGATTTTAACGGTGTAAATTAATTTGGGTGTGGTGGGGGTAAAAGGGAAAAAGAATCTGTATTTGGGAGAAGGATGGTATAAGAGTTGGGGAAATGGGGTAAGATAGGGTGGCTATTA TATTTTTTTTCTTTCTTGTTGGTTACCTGGTATACTCCCAGTATTGTACTAGTAGCTCTCCTCTCTCCTTTGTGTGGTGATGTACATAAAGAGAAGGGTATACATTTGTGAACTGGAATGTGGTTGAGGATGGGGATGGATACCTAATCCCTTTGCAAGGCTTGGCTTGCCTCTTCCTGGAAATTGAAAATTCTGATCATGGCCTCTAAAAAAAAAAAAAAA] consensusID : consensus_11113#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 654 fasta sequence [GCGTGCTGGGTCTTGCCTGGCCTTGGTGTCGCGGTTCTTCTTTGCCCCTGTTTGGGCCTGTGATGGGCGGTGGTGGGTGGGTTGTTCCCTGGCTGCGGCCCGCTGCAGCGCCCGTTGGTGAGCGGCGACGGCTGCGTAGGGGCGTTGGCTAGCTGCGCCATGTAGCAGCGGTCTGGGGGGTGTGGCTTGGGCCCCTTAGGATGTGGGGAGGTTTTGGTCGCGACGTTAGGTTATCGCTGGTCCTCGCTCTGAATGTTCGTGGCTGTGTTATGTCGGCGCGGATGCGCCGGTGATCGGGGGCGTAGTAAGTGATTGGTTGTGGTATTATAGTTGGGGATTTTTAACGGTGTGATATTTATTTGGGGTTGGTGGGGGTAAAAGGGAAGAAAGAATCTTGTATTTGGGAGAAGGATGGTATAAGAGTTGGGGAAATGGGGTAATGATAGGGTGGCTATTATATTTTGTGTTCCTTCTTGTTGGTTACCTGGTATACTCCCAGTATTGTACTAGTAGCTCTCCTCTCTCCTTTGTGTGGTGATGTACATATAAGAGAAGGGTATACATTTGTGAACTGGAATGTGGTTGAGGATGGGGATGGATACCTAATCCTTTTGCAAGGCTTGGCTTGCCTCTTCCTGGAAAAAAAAAAAAAAA] [+] EMBL BI809121 [GCGTGCTGGGTCTTGCCTGGCCTTGGTGTCGCGGTTCTTCTTTGCCCCTGTTTGGGCCTGTGATGGGCGGTGGTGGGTGGGTTGTTCCCTGGCTGCGGCCCGCTGCAGCGCCCGTTGGTGAGCGGCGACGGCTGCGTAGGGGCGTTGGCTAGCTGCGCCATGTAGCAGCGGTCTGGGGGGTGTGGCTTGGGCCCCTTAGGATGTGGGGAGGTTTTGGTCGCGACGTTAGGTTATCGCTGGTCCTCGCTCTGAATGTTCGTGGCTGTGTTATGTCGGCGCGGATGCGCCGGTGATCGGGGGCGTAGTAAGTGATTGGTTGTGGTATTATAGTTGGGGATTTTTAACGGTGTGATATTTATTTGGGGTTGGTGGGGGTAAAAGGGAAGAAAGAATCTTGTATTTGGGAGAAGGATGGTATAAGAGTTGGGGAAATGGGGTAATGATAGGGTGGCTATTATATTTTGTGTTCCTTCTTGTTGGTTACCTGGTATACTCCCAGTATTGTACTAGTAGCTCTCCTCTCTCCTTTGTGTGGTGATGTACATATAAGAGAAGGGTATACATTTGTGAACTGGAATGTGGTTGAGGATGGGGATGGATACCTAATCCTTTTGCAAGGCTTGGCTTGCCTCTTCCTGGAAAAAAAAAAAAAAA] consensusID : consensus_11113#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 562 fasta sequence [TCCATGGTCGACATGCTGCTGCGCTCGCAAACAATGACCGCTCCTCAACCCCTCGACAGATGTAGGCATGTGAAGTCGTTTCCAGCGCGCCCGCAGCCTAGGTAACTGCANATTTCTAGTCNTTTGGCAACGCCACATAAGGATGGGTTTTGCTATAACGCCTAGACTGTGAACTTTGGTGAAACGTACGTACGCTGTCACGTTGAATTCTTGGTTTTGTGGCGCGGACGGACGGGACGCGGGGTATAGTTTGTGCTCGGTATAAGGGCGGATTTTAACCGGTGTAAATTAATTTGGGTNTGGTGTGNGGGTAAAAGGGAAAAACGAATCTGTATTTGGGAGAAGGATGGTATAAGAGTTGGGGAAATGGGGTAAGATAGGGTGGCTATTATACTTTTTTTTCCTTCTTGCTTGGTTACCTGGTATACTCCCAGTATTTGTACTAGTAGCTCTCCTCTCTCCTTTGTGTGGTGATGTACATAAAGAGAAGGGTATACCATTTGTGAACTGGAATGTGGTTGAGGATGGGGATGGATACCTAATCCTTTTGCCAAAAAAAAAA] [+] EMBL BQ906691 [TCCATGGTCGACATGCTGCTGCGCTCGCAAACAATGACCGCTCCTCAACCCCTCGACAGATGTAGGCATGTGAAGTCGTTTCCAGCGCGCCCGCAGCCTAGGTAACTGCANATTTCTAGTCNTTTGGCAACGCCACATAAGGATGGGTTTTGCTATAACGCCTAGACTGTGAACTTTGGTGAAACGTACGTACGCTGTCACGTTGAATTCTTGGTTTTGTGGCGCGGACGGACGGGACGCGGGGTATAGTTTGTGCTCGGTATAAGGGCGGATTTTAACCGGTGTAAATTAATTTGGGTNTGGTGTGNGGGTAAAAGGGAAAAACGAATCTGTATTTGGGAGAAGGATGGTATAAGAGTTGGGGAAATGGGGTAAGATAGGGTGGCTATTATACTTTTTTTTCCTTCTTGCTTGGTTACCTGGTATACTCCCAGTATTTGTACTAGTAGCTCTCCTCTCTCCTTTGTGTGGTGATGTACATAAAGAGAAGGGTATACCATTTGTGAACTGGAATGTGGTTGAGGATGGGGATGGATACCTAATCCTTTTGCCAAAAAAAAAA] consensusID : consensus_11113#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 362 fasta sequence [TGCTTTGCTCGCTCGCTGCTTTTCTCTTTCTTAAAGGCTGCTCCCTCACTCACAACTCCCTCTCTCTCTCTCTCTCTCTCTGTGGGAATGTCGATGCTGACGTCGACGAGGGCTTCTTCTCTCTCTCTTGTCACTCATCATCATCACTCTTCAGCTTGCTTGGTTGGTTGGTGGAGCTTGGGAGTTGAGGTCAAATAGCCATCGATACACACTCCTCTTTCTTTTCTCTCTTCATTTCTTTCTTTACATCGTCTCTTTCTTGATTTCCCAATCTACTAAGCTCCTACTAGCTCTGTGCTCTGCTGCTTCCTCCCATACATGGCGGCGGGTGCCAGCGACCCACCTACCTACAAGTAGCTTAA] [+] EMBL CB640538 [TGCTTTGCTCGCTCGCTGCTTTTCTCTTTCTTAAAGGCTGCTCCCTCACTCACAACTCCCTCTCTCTCTCTCTCTCTCTCTGTGGGAATGTCGATGCTGACGTCGACGAGGGCTTCTTCTCTCTCTCTTGTCACTCATCATCATCACTCTTCAGCTTGCTTGGTTGGTTGGTGGAGCTTGGGAGTTGAGGTCAAATAGCCATCGATACACACTCCTCTTTCTTTTCTCTCTTCATTTCTTTCTTTACATCGTCTCTTTCTTGATTTCCCAATCTACTAAGCTCCTACTAGCTCTGTGCTCTGCTGCTTCCTCCCATACATGGCGGCGGGTGCCAGCGACCCACCTACCTACAAGTAGCTTAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_11113#0 ------------------------------------------------------------ consensus_11113#3 ------------------------------------------------------------ consensus_11113#1 GCGTGCTGGGTCTTGCCTGGCCTTGGTGTCGCGGTTCTTCTTTGCCCCTGTTTGGGCCTG 60 consensus_11113#2 ---TCCATGGTCG-ACATGCTGCTGCGCTCGCAAACAATGACCGCTCCT---CAACCCCT 53 consensus_11113#0 ------------------------------------------------------------ consensus_11113#3 ------------------------------------------------------------ consensus_11113#1 TGATGGGCGGTGGTGGGTGGGTTGTTCCCTGGCTGCGGCCCGCTGCAGCGCCCGTTGGTG 120 consensus_11113#2 CGACAGATGTAGGCATGTGAAGTCGTTTCCAGC-GCG-CCCGCAGCC-----------TA 100 consensus_11113#0 ------------------------------------CTTCTTTCTTTTTTCCCCCTCGCC 24 consensus_11113#3 ------------------------------------------------------------ consensus_11113#1 AGCGGCGACGGCTGCGTAGGGGCGTTGGCTAGCTGCGCCATGTAGCAGCGGTCTGGGGGG 180 consensus_11113#2 GGTAACTGCANATTTCTAG-----TCNTTTGGCAACGCCACATAA--------GGATGGG 147 consensus_11113#0 ATAGGCGCCCTGTGCTTTGCTCGCTCGCTGCTTTT---CTCTTTCTTAAAAGGCTGCTC- 80 consensus_11113#3 ------------TGCTTTGCTCGCTCGCTGCTTTT---CTCTTTCTTAAA-GGCTGCTC- 43 consensus_11113#1 TGTGGCTTGGGCCCCTTAGGATGTGGGGAGGTTTTGGTCGCGACGTTAGGTTATCGCTGG 240 consensus_11113#2 TTTTGCTATAACGCCT-AGACTGTG----AACTTTGGT-GAAACGTACG--TA-CGCTG- 197 ** * * *** * *** consensus_11113#0 -CCTCACTCACAAC-TCCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT-CCTCA 137 consensus_11113#3 -CCTCACTCACAAC-TCCCTCTCTCTCTCTCTCTCTCTCTGTGGGAATGTCGAT-GCTGA 100 consensus_11113#1 TCCTCGCTCTGAATGTTCGTGGCTGTGTTATGTCGGCGCGGATGCGCCGGTGATCGGGGG 300 consensus_11113#2 ---TCACGTTGAA--TTCTTGGTTTTGT------GGCGCGGACGGACGG--GACGCGGGG 244 ** * ** * * * * * * * * consensus_11113#0 CCTCTTCTTGTTCTTCTTCTCTCTCTCTTGTCACTCATCATCATCACTCTTCAGCTTGCT 197 consensus_11113#3 CGTCGACGAGGGCTTCTTCTCTCTCTCTTGTCACTCATCATCATCACTCTTCAGCTTGCT 160 consensus_11113#1 CGTAGTAAGTGATTGGTTGTGGTATTATAGTTGGGGATTTTTAACGGTGTGATATTTATT 360 consensus_11113#2 TATAGTTTGTGCTCGGT---------ATAAGGGCGGATTTTAACCGGTGTAA-ATTAATT 294 * * * ** * * * * * * * consensus_11113#0 TGG--TTGGTT----GGTGGAG----------------C---TTGGGAGTTGA--GGTCA 230 consensus_11113#3 TGG--TTGGTT----GGTGGAG----------------C---TTGGGAGTTGA--GGTCA 193 consensus_11113#1 TGGGGTTGGTG--GGGGTAAAAGGGAAGAAAGAATCTTGTATTTGGGAGAAGGATGGTAT 418 consensus_11113#2 TGGGTNTGGTGTGNGGGTAAAAGGGAAAAACGAATCT-GTATTTGGGAGAAGGATGGTAT 353 *** **** *** * ******* * *** consensus_11113#0 AATAGCCATCGATACACACTCCTCTTTCTTTTCTCTCTTCATTTCTTTCTTTACATCG-T 289 consensus_11113#3 AATAGCCATCGATACACACTCCTCTTTCTTTTCTCTCTTCATTTCTTTCTTTACATCG-T 252 consensus_11113#1 AAGAGTTGGGGAAATGGGGTAATGATAGGGTGGCTATTATATTTTGTGTTCCTTCTTG-T 477 consensus_11113#2 AAGAGTTGGGGAAATGGGGTAA-GATAGGGTGGCTATTATACTTTTTTTTCCTTCTTGCT 412 ** ** ** * * * * * * ** * * * * * consensus_11113#0 CTCTTTCTTGATTTCCCAATCTACTAAG-CTCCTACTAGCTCTGTGCTCTGCT--GCTTC 346 consensus_11113#3 CTCTTTCTTGATTTCCCAATCTACTAAG-CTCCTACTAGCTCTGTGCTCTGCT--GCTTC 309 consensus_11113#1 TGGTTACCTGGTATACT--CCCAGTATT-GTACTAGTAGCTCTCCTCTCTCCTTTGTGTG 534 consensus_11113#2 TGGTTACCTGGTATACT--CCCAGTATTTGTACTAGTAGCTCTCCTCTCTCCTTTGTGTG 470 ** * ** * * * * * ** * *** ******* **** ** * * consensus_11113#0 CTCCCATCCATG-GCGGCGGTTGCCAGCGACCCACCTACCTACAAGTAGCTTAAGCTCAA 405 consensus_11113#3 CTCCCATACATG-GCGGCGGGTGCCAGCGACCCACCTACCTACAAGTAGCTTAA------ 362 consensus_11113#1 GTGATGTACATATAAGAGAAGGGTATAC-ATTTGTGAACTGGAATGTGGTTGAGGATGGG 593 consensus_11113#2 GTGATGTACATA-AAGAGAAGGGTATACCATTTGTGAACTGGAATGTGGTTGAGGATGGG 529 * * *** * * * * ** * ** * * * consensus_11113#0 GCTCAGCTCAGATCGGAGAGGGGTGGTAGAGGTAGTAGCAGTAGTTGAGAGAGAGAGTGA 465 consensus_11113#3 ------------------------------------------------------------ consensus_11113#1 GATGGATACCTAATCCTTTTGCAAGGCTTGGCTTGCCTCTTCCTGGAAAAAAAAAAAAAA 653 consensus_11113#2 GATGGATACCTAATCCTTTTGCCAAAAAAAAAA--------------------------- 562 consensus_11113#0 GGATGGAGAGCAGATGGAGGAAGGCCAAGATGTCGCTGGGGCTCAACCTCTGCGTCTACG 525 consensus_11113#3 ------------------------------------------------------------ consensus_11113#1 A----------------------------------------------------------- 654 consensus_11113#2 ------------------------------------------------------------ consensus_11113#0 TGCCCAGGACGCTGGACGACGGCGACTCGCCGTCCACCGGGTCGTCCACGGCGGCGCTGG 585 consensus_11113#3 ------------------------------------------------------------ consensus_11113#1 ------------------------------------------------------------ consensus_11113#2 ------------------------------------------------------------ consensus_11113#0 TGTCGCCGGTGGCGTCCTCGTCGTCGGCGGCGACCAGCGCCAACACCACGCCCACGGCGG 645 consensus_11113#3 ------------------------------------------------------------ consensus_11113#1 ------------------------------------------------------------ consensus_11113#2 ------------------------------------------------------------ consensus_11113#0 AGCAGAGGGTCAAGGGCGCCGGCGCGCTCATGCCGACCACCCCGACGCCGACCTCCGCCG 705 consensus_11113#3 ------------------------------------------------------------ consensus_11113#1 ------------------------------------------------------------ consensus_11113#2 ------------------------------------------------------------ consensus_11113#0 GACTTCGCCTCTCCAAATCCGGCAGCAAATCCTTCAAGAAAACATGTGCGATATGTTTGA 765 consensus_11113#3 ------------------------------------------------------------ consensus_11113#1 ------------------------------------------------------------ consensus_11113#2 ------------------------------------------------------------ consensus_11113#0 CCACAATGAAGCCTGGTCAGGGCCATGCTCTATTCACAGCAGAGTGCTCACATACCTTTC 825 consensus_11113#3 ------------------------------------------------------------ consensus_11113#1 ------------------------------------------------------------ consensus_11113#2 ------------------------------------------------------------ consensus_11113#0 ACTTCCATTGTATAGCTGCAAATGTTAAGCATGGAAGCAACAATTGCCCAGTTTGCCGCA 885 consensus_11113#3 ------------------------------------------------------------ consensus_11113#1 ------------------------------------------------------------ consensus_11113#2 ------------------------------------------------------------ consensus_11113#0 CCAAGTGGAAGGAACTCCCATTTCGAGGTCCCTTGCCTGGTGAATTTCCTCAAGGAAGTG 945 consensus_11113#3 ------------------------------------------------------------ consensus_11113#1 ------------------------------------------------------------ consensus_11113#2 ------------------------------------------------------------ consensus_11113#0 CAAGGATTAATCCAGTTAATGGGCACCAAAATGGCGGGCAGATGACCATACTGCGACCAC 1005 consensus_11113#3 ------------------------------------------------------------ consensus_11113#1 ------------------------------------------------------------ consensus_11113#2 ------------------------------------------------------------ consensus_11113#0 TTCCCCGTGCTCGTTCTTCTGGTCGGCTGCATCATATGACATCGTTGTTGCCTGACACTG 1065 consensus_11113#3 ------------------------------------------------------------ consensus_11113#1 ------------------------------------------------------------ consensus_11113#2 ------------------------------------------------------------ consensus_11113#0 ACCGTAGTATTTTTAACGATGATGAACCCTTGGACTCACTGTCTGAAGCAAATGAAGGCT 1125 consensus_11113#3 ------------------------------------------------------------ consensus_11113#1 ------------------------------------------------------------ consensus_11113#2 ------------------------------------------------------------ consensus_11113#0 CGCAGCAGGGGTGTTTAAGAACAGTGGAAATAAAGACATATCCTGAGTTCACTGAAGTTC 1185 consensus_11113#3 ------------------------------------------------------------ consensus_11113#1 ------------------------------------------------------------ consensus_11113#2 ------------------------------------------------------------ consensus_11113#0 CAGAAAGTACTTCAGAAAGAAATTTTACAGTCCTAGTTCATCTAAAGGCACCCCTTGCTC 1245 consensus_11113#3 ------------------------------------------------------------ consensus_11113#1 ------------------------------------------------------------ consensus_11113#2 ------------------------------------------------------------ consensus_11113#0 AGACTTTGCAAACAAGCAGCAAACTTGAAGATGGCAATAGCTTGGGCACAACTCGAGCCC 1305 consensus_11113#3 ------------------------------------------------------------ consensus_11113#1 ------------------------------------------------------------ consensus_11113#2 ------------------------------------------------------------ consensus_11113#0 CTGTTGATCTCATCACAGTGCTTGATGTCAGTGGGAGCATGGCTGGTACCAAACTTGCAT 1365 consensus_11113#3 ------------------------------------------------------------ consensus_11113#1 ------------------------------------------------------------ consensus_11113#2 ------------------------------------------------------------ consensus_11113#0 TGCTGAAAAGAGCCATGGGATTTGTCATTCAGAACCTTGGCTCCTCAGATCGGCTTTCTG 1425 consensus_11113#3 ------------------------------------------------------------ consensus_11113#1 ------------------------------------------------------------ consensus_11113#2 ------------------------------------------------------------ consensus_11113#0 TAATTGCCTTCTCATCATCTGCACGTAGACTCTTCCCCCTCCGTCGGATGACTGAGACTG 1485 consensus_11113#3 ------------------------------------------------------------ consensus_11113#1 ------------------------------------------------------------ consensus_11113#2 ------------------------------------------------------------ consensus_11113#0 GTCGTCAGCAAAGCTTGCAAGCTGTTTATTCACTGACATCAAATGGTGGGACCAATATTG 1545 consensus_11113#3 ------------------------------------------------------------ consensus_11113#1 ------------------------------------------------------------ consensus_11113#2 ------------------------------------------------------------ consensus_11113#0 CTGAGGGCCTGAGGAAAGGCTCCAAAGTGATTGAAGATCGACAGGCCAAGAATCCAGTGT 1605 consensus_11113#3 ------------------------------------------------------------ consensus_11113#1 ------------------------------------------------------------ consensus_11113#2 ------------------------------------------------------------ consensus_11113#0 GCAGCATCATCCTACTATCAGATGGGCAAGATACATATACAGTCTCACCAACCGCTGGTG 1665 consensus_11113#3 ------------------------------------------------------------ consensus_11113#1 ------------------------------------------------------------ consensus_11113#2 ------------------------------------------------------------ consensus_11113#0 TACACAAAGCAGCACCAGAGTACTGCTCACTCCTGCCATATACTAGTAATGGTTGTCAAC 1725 consensus_11113#3 ------------------------------------------------------------ consensus_11113#1 ------------------------------------------------------------ consensus_11113#2 ------------------------------------------------------------ consensus_11113#0 AGGTACCAGTTCATGTCTTTGGATTTGGTGCTGACCATGATTCAGTCTCGCTGCATTCAA 1785 consensus_11113#3 ------------------------------------------------------------ consensus_11113#1 ------------------------------------------------------------ consensus_11113#2 ------------------------------------------------------------ consensus_11113#0 TCTCACAAACCTCCGGGGGCACCTTTTCATTCATAGAGACAGAGGCTGCCATCCAAGATG 1845 consensus_11113#3 ------------------------------------------------------------ consensus_11113#1 ------------------------------------------------------------ consensus_11113#2 ------------------------------------------------------------ consensus_11113#0 CATTTGCCCAGTGTATTGGTGGACTCTTGAGTGTTGTTGCACAGGATTTGCATGTAAAGG 1905 consensus_11113#3 ------------------------------------------------------------ consensus_11113#1 ------------------------------------------------------------ consensus_11113#2 ------------------------------------------------------------ consensus_11113#0 TGGAGAGCCTCCACCCTGATGTACACTTTGGCTCGATCAGATCAGGAAGCTATTCTAGCA 1965 consensus_11113#3 ------------------------------------------------------------ consensus_11113#1 ------------------------------------------------------------ consensus_11113#2 ------------------------------------------------------------ consensus_11113#0 GACTTGCAGATGACAAGAGGAATGGCTCCATAGATGTTGGTGACATGTATGCCGAAGAGG 2025 consensus_11113#3 ------------------------------------------------------------ consensus_11113#1 ------------------------------------------------------------ consensus_11113#2 ------------------------------------------------------------ consensus_11113#0 AGAGGGATTTCCTTATGTCAGTAAATGTTCCCCCAGGTTACGGTGAAACAGCACTTCTCA 2085 consensus_11113#3 ------------------------------------------------------------ consensus_11113#1 ------------------------------------------------------------ consensus_11113#2 ------------------------------------------------------------ consensus_11113#0 AAGTTGGCTGTGTCTACAAAGATCCACTGATGAAGGAGACTATCAATATGGCTGATGTGC 2145 consensus_11113#3 ------------------------------------------------------------ consensus_11113#1 ------------------------------------------------------------ consensus_11113#2 ------------------------------------------------------------ consensus_11113#0 AAGTCAAGATCTCTAGACCAGCATTCGTCTCAGTACAAAGCGTGTCAATCGAGGTGGACC 2205 consensus_11113#3 ------------------------------------------------------------ consensus_11113#1 ------------------------------------------------------------ consensus_11113#2 ------------------------------------------------------------ consensus_11113#0 GACAAAAGAACCGTCTTCATGCAGCTGAAGTCATGGCTGAAGCAAGGTTGTCTGCCGAGC 2265 consensus_11113#3 ------------------------------------------------------------ consensus_11113#1 ------------------------------------------------------------ consensus_11113#2 ------------------------------------------------------------ consensus_11113#0 GTGGTGACCTGACACATGCTGTTTCCTTACTCGAAGACTGCCGGAGGATGATCATGGGGT 2325 consensus_11113#3 ------------------------------------------------------------ consensus_11113#1 ------------------------------------------------------------ consensus_11113#2 ------------------------------------------------------------ consensus_11113#0 CAACATCAGGACAATCCGGTGATCGGTTGTGCCAAGCATTGGATGCTGAGCTGAAGGAGA 2385 consensus_11113#3 ------------------------------------------------------------ consensus_11113#1 ------------------------------------------------------------ consensus_11113#2 ------------------------------------------------------------ consensus_11113#0 TGCAAGAAAGGATGGCCAATCGCCAAAGGTACGAAGCATCAGGCCGCGCCTATGTCCTCT 2445 consensus_11113#3 ------------------------------------------------------------ consensus_11113#1 ------------------------------------------------------------ consensus_11113#2 ------------------------------------------------------------ consensus_11113#0 CCGGCTTGAGCTCACACTCATGGCAGAGAGCAACTGCGCGAGGTGACTCCACAGACAGCG 2505 consensus_11113#3 ------------------------------------------------------------ consensus_11113#1 ------------------------------------------------------------ consensus_11113#2 ------------------------------------------------------------ consensus_11113#0 AGAGCCTAATCCAGGCCTACCAGACTTCATCCATGGTCGACATGCTGCTGCGCTCGCAGA 2565 consensus_11113#3 ------------------------------------------------------------ consensus_11113#1 ------------------------------------------------------------ consensus_11113#2 ------------------------------------------------------------ consensus_11113#0 CAATGAGCCGCTCCTCAACCCCTCCACAGATGAGGCATGTGAAGTCGTTTCCAGCGCGCC 2625 consensus_11113#3 ------------------------------------------------------------ consensus_11113#1 ------------------------------------------------------------ consensus_11113#2 ------------------------------------------------------------ consensus_11113#0 CGCAGCCTAGGTAACTGCAATTTCTAGTGTTTGGCAACGCCAATAAGGATGGGTTTTGCT 2685 consensus_11113#3 ------------------------------------------------------------ consensus_11113#1 ------------------------------------------------------------ consensus_11113#2 ------------------------------------------------------------ consensus_11113#0 AAAGCCTAGATGTGAATTTGGTGAAAGTAGTAGTGTCAGTTGAATTCTTGGTTTTGTGGC 2745 consensus_11113#3 ------------------------------------------------------------ consensus_11113#1 ------------------------------------------------------------ consensus_11113#2 ------------------------------------------------------------ consensus_11113#0 GGGAGGACGGGACGGGGGTATAGTTTGTGTGGTATAAGGGGGATTTTAACGGTGTAAATT 2805 consensus_11113#3 ------------------------------------------------------------ consensus_11113#1 ------------------------------------------------------------ consensus_11113#2 ------------------------------------------------------------ consensus_11113#0 AATTTGGGTGTGGTGGGGGTAAAAGGGAAAAAGAATCTGTATTTGGGAGAAGGATGGTAT 2865 consensus_11113#3 ------------------------------------------------------------ consensus_11113#1 ------------------------------------------------------------ consensus_11113#2 ------------------------------------------------------------ consensus_11113#0 AAGAGTTGGGGAAATGGGGTAAGATAGGGTGGCTATTATTTTTTTTTTCCTTCTTGTTGG 2925 consensus_11113#3 ------------------------------------------------------------ consensus_11113#1 ------------------------------------------------------------ consensus_11113#2 ------------------------------------------------------------ consensus_11113#0 TTACCTGGTATACTCCCAGTATTGTACTAGTAGCTCTCCTCTCTCCTTTGTGTGGTGATG 2985 consensus_11113#3 ------------------------------------------------------------ consensus_11113#1 ------------------------------------------------------------ consensus_11113#2 ------------------------------------------------------------ consensus_11113#0 TACATAAAGAGAAGGGTATACATTTGTGAACTGGAATGTGGTTGAGGATGGGGATGGATA 3045 consensus_11113#3 ------------------------------------------------------------ consensus_11113#1 ------------------------------------------------------------ consensus_11113#2 ------------------------------------------------------------ consensus_11113#0 CCTAATCCCTTTGCAAGGCTTGGCTTGCCTCTTCCTGGAAATTGAAAATTCTGATCATGG 3105 consensus_11113#3 ------------------------------------------------------------ consensus_11113#1 ------------------------------------------------------------ consensus_11113#2 ------------------------------------------------------------ consensus_11113#0 CCTCTAAAAAAAAAAAAAAA 3125 consensus_11113#3 -------------------- consensus_11113#1 -------------------- consensus_11113#2 -------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||