These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11116#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1179 fasta sequence [CTAGGATGATGCGGAGCGCAATCCAGTTTCTTTCAAGAAAATGGCCATTCTGGAATAGAACTGATGGAGCAGATCATTTCTTTGTTGTTCCCATGATTTTGGGGCATGCTTTCACTATCAGGAAGAGAAAGCTATTGTTTGTGGGATACTTCCATTGCTCCGCCGTGCCACATTGGTTCATTTTTTTGGACAGAAGAACCATGTGTGCTTGAAGGAGGGTTCTATCACTATACCACCATATGCGCCTCCTCAGAAAATGCAAGCTCACTTGATTCCTCCTGATACTCCCCGTTCAATCTTTGTTTACTTCAGAGGCCTGTTCTATGACAATGGGAATGACCCTGAGGGTGGGTATTATGCAAGAGGTGCCCGAGCTTCACTGTGGGAGAATTTCAAGAACAATCCCCTCTTCGACATTTCTACGGAACACCCAGCTACTTACTATGAAGATATGCAGCGCTCAGTCTTCTGCTTGTCCCCCTTGGGATGGGCACCATGGAGCCCTAGATTGGTGGAGGCTGTAGTTNTCGGTTGCATTCCAGTCATCATAGCTGATGATATTGTGCTTCCGTTTGCTGACGCAATCCCATGGGACGAAATCGGTGTTTTTGTTGACG-AGGAGGATGTTCCAAGGCTAGACTCAATCCTCACATCCATCCCAATTGATGATATCCTAAGGAAGCAAAGATTACTCGCCAATCCATCAATGAAACAGGCCATGTTGTTTCCGCAGCCAGCACAACCTAGAGATGCATTCCATCAGATCCTCAACGGCCTTGCTCGGAAGCTCCCACACCCAGACAGTGTATACTTAAAGCCAGGCGAGAAGCATCTCAACTGGACTGCGGGGCCTGTAGCAGATCTGAAACCTTGGAAATAGAAAAGCTCACATGAAAAACTCGGCTTTGATGTTATTGTGAAGTTTTAAGTTATGTCCTTTTCCACTGAGGAGTTTCTAGTTTCACATAGCTAGATGATATTTATCAAAGTTGTATATCTCCAATGTCGCTGAGCTAAATGCCTACTCTGTGGAAGTGAGTGGAACAGTTTGTAGCTTTGTAATTGTATAAAAAAAATTAAAGCAATGAATGTCAGAATTTGTTCTTGTGTTCACTAAACTAGCTGGGTGACCCGCGCAATTGCGCGGCTAGCACCCATAGAAAAGTATATATATTTTAA] [+] EMBL CF331937 [CTAGGATGATGCGGAGCGCAATCCAGTTTCTTTCAAGAAAATGGCCATTCTGGAATAGAACTGATGGAGCAGATCATTTCTTTGTTGTTCCCATGATTTTGGGGCATGCTTTCACTATCAGGAAGAGAAAGCTATTGTTTGTGGGATACTTCCATTGCTCCGCCGTGCCACATTGGTTCATTTTTTTGGACAGAAGAACCATGTGTGCTTGAAGGAGGGTTCTATCACTATACCACCATATGCGCCTCCTCAGAAAATGCAAGCTCACTTGATTCCTCCTGATACTCCCCGTTCAATCTTTGTTTACTTCAGAGGCCTGTTCTATGACAATGGGAATGACCCTGAGGGTGGGTATTATGCAAGAGGTGCCCGAGCTTCACTGTGGGAGAATTTCAAGAACAATCCCCTCTTCGACATTTCTACGGAACACCCAGCTACTTACTATGAAGATATGCAGCGCTCAGTCTTCTGCTTGTCCCCCTTGGGATGGGCACCATGGAGCCCTAGATTGGTGGAGGCTGTAGTTNTCGGTTGCATTCCAGTCATCATAGCTGATGATATTGTGCTTCCGTTTGCTGACGCAATCCCATGGGACGAAATCGGTG ] [+] EMBL CA999220 [ TCCAGTCATCATAGCTGATGATATTGTGCTTCCGTTTGCTGACGCAATCCCATGGGACGAAATCGGTGTTTTTGTTGACG AGGAGGATGTTCCAAGGCTAGACTCAATCCTCACATCCATCCCAATTGATGATATCCTAAGGAAGCAAAGATTACTCGCCAATCCATCAATGAAACAGGCCATGTTGTTTCCGCAGCCAGCACAACCTAGAGATGCATTCCATCAGATCCTCAACGGCCTTGCTCGGAAGCTCCCACACCCAGACAGTGTATACTTAAAGCCAGGCGAGAAGCATCTCAACTGGACTGCGGGGCCTGTAGCAGATCTGAAACCTTGGAAATAGAAAAGCTCACATGAAAAACTCGGCTTTGATGTTATTGTGAAGTTTTAAGTTATGTCCTTTTCCACTGAGGAGTTTCTAGTTTCACATAGCTAGATGATATTTATCAAAGTTGTATATCTCCAATGTCGCTGAGCTAAATGCCTACTCTGTGGAAGTGAGTGGAACAGTTTGTAGCTTTGTAATTGTATAAAAAAAATTAAAGCAATGAATGTCAGAATTTGTTCTTGTGTTCACTAAACTAGCTGGGTGACCCGCGCAATTGCGCGGCTAGCACCCATAGAAAAGTATATATATTTTAA] [+] EMBL C28418 [ gnACGNAGGAGGATGTTCCAAGGCTAGACTCAATCCTCACATCCATCCCAATTGATGATATCCTAAGGAAGCAAAGATTACTCGCCAATCCATCAATGAAACAGGCCATGTTGTTTCCGCAGCCAGCACAACCTAGAGATGCATTCCATCAGATCCTCAACGGCCTTGCTCGGAAGCTCCCACACCCAGACAGTGTATACTTAAAGCCAGGCGAGAAGCATCTCAACTGGACTGCGGGGCCTGTAGCAGATCTGAAACCTTGGAAATAGAAAAGCTCACATGAAAAACTCGGCTTTGATGTTATTGTGAAGNTTTAAGTTATGTCCTTTTCCACTGAGGAGGTTCTAGTTTCACATAGCTAGATGATATTTATCAAAGTTGTAT ] [-] EMBL BI305489 [ CCAATTGATGATATCCTAAGGAAGCAAAGATTACTCGCCAATCCATCAATGAAACAGGCCATGTTGTTTCCGCAGCCAGCACAACCTAGAGATGCATTCCATCAGATCCTCAACGGCCTTGCTCGGAAGCTCCCACACCCAGACAGTGTATACTTAAAGCCAGGCGAGAAGCATCTCAACTGGACTGCGGGGCCTGTAGCAGATCTGAAACCTTGGAAATAGAAAAGCTCACATGAAAAACTCGGCTTTGATGTTATTGTGAAGTTTTAAGTTATGTCCTTTTCCACTGAGGAGTTTCTAGTTTCACATAGCTAGATGATATTTATCAAAGTTGTATATCTCCAATGTCGCTGAGCTAAATGCCTACTCTGTGGAAGTGAGTGGAACAGTTTGTAGCTTTGTAATTGTATAAAAAAAATTAAAGCAATGAATGTCAGAATTTGTTCTT ] [-] EMBL BI305969 [ CCAATTGATGATATCCTAAGGAAGCAAAGATTACTCGCCAATCCATCAATGAAACAGGCCATGTTGTTTCCGCAGCCAGCACAACCTAGAGATGCATTCCATCAGATCCTCAACGGCCTTGCTCGGAAGCTCCCACACCCAGACAGTGTATACTTAAAGCCAGGCGAGAAGCATCTCAACTGGACTGCGGGGCCTGTAGCAGATCTGAACCCTTGGAAATAGAAAAGCTCACATGAAAAACTCGGCTTTGATGTTATTGTGAAGTTTTAAGTTATGTCCTTTTCCACTGAGGAGTTTCTAGTTTCACATAGCTAGATGATATTTATCAAAGTTGTATATCTCCAATGTCGCTGAGCTAAATGCCTACTCTGTGGAAGTGAGTGGAACAGTTTGTAGCTTTGTAATTGTATAAAAAAAATTAAAGCAATGAATGTCAGAATTTGTTCTT ] [-] EMBL CF331936 [ AAAGCCAGGCGAGAAGCATCTCAACTGGACTGCGGGGCCTGTAGCAGATCTGAAACCTTGGAAATAGAAAAGCTCACATGAAAAACTCGGCTTTGATGTTATTGTGAAGTTTTAAGTTATGTCCTTTTCCACTGAGGAGTTTCTAGTTTCACATAGCTAGATGATATTTATCAAAGTTGTATATCTCCAATGTCGCTGAGCTAAATGCCTACTCTGTGGAAGTGAGTGGAACAGTTTGTAGCTTTGTAATTGTATAAAAAAAATTAAAGCAATGAATGTCAGAATTTGTTCTTGTGTTC CAAAAaaaaaaaaa ] consensusID : consensus_11116#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 497 fasta sequence [AGGATGTTCCAAGGCTAGANTCAATCCTCACATCCATCCCAATTGATGATANCCTAAGGAAGCAAAGATTACTCGCCAATCCATCAATGAAACAGGCCATGTTGTTTCCGCAGCCAGCACAACCTAGAGATGCATTCCATCAGATCCTCAACGGCCTTGCTCGGAAGCTCCCACACCCAGACAGTGTATACTTAAAGCCAGGCGAGAAGCATCTCAACTGGACTGCGGGGCCTGTAGCAGATCTGAAACCTTGGAAATAGAAAAGCTCACATGAAAAACTCGGCTTTGATGTTATTGTGAAGTTTTAAGTTATGTCCTTTTCCACTGAGGAGTTTCTAGTTTCACATAGCTAGATGATATTTATCAAAGTTGTATATCTCCAATGTCGCTGAGCTAAATGCCTACTCTGTGGAAGTGAGTGGAACAGTTTGTAGCTTTGTAATTGTATAAAAAAAATTAAAGCAATGAATGTCAGAA----TTAA-------AAAAAAAAAAAAAAAA] [+] EMBL AU092938 [AGGATGTTCCAAGGCTAGANTCAATCCTCACATCCATCCCAATTGATGATANCCTAAGGAAGCAAAGATTACTCGCCAATCCATCAATGAAACAGGCCATGTTGTTTCCGCAGCCAGCACAACCTAGAGATGCATTCCATCAGATCCTCAACGGCCTTGCTCGGAAGCTCCCACACCCAGACAGTGTATACTTAAAGCCAGGCGAGAAGCATCTCAACTGGACTGCGGGGCCTGTAGCAGATCTGAAACCTTGGAAATAGAAAAGCTCACATGAAAAACTCGGCTTTGATGTTATTGTGAAGTTTTAAGTTATGTCCTTTTCCACTGAGGAGTTTCTAGTTTCACATAGCTAGATGATATTTATCAAAGTTGTATATCTCCAATGTCGCTGAGCTAAATGCCTACTCTGTGGAAGTGAGTGGAACAGTTTGTAGCTTTGTAATTGTATAAAAAAAATTAAAGCAATGAATGTCAGAA TTAA AAAAAAAAAAAAAAA ] [-] EMBL CF278722 [ ATCAGATCCTCAACGGCCTTGCTCGGAAGCTCCCACACCCAGACAGTGTATACTTAAAGCCAGGCGAGAAGCATCTCAACTGGACTGCGGGGCCTGTAGCAGATCTGAAACCTTGGAAATAGAAAAGCTCACATGAAAAACTCGGCTTTGATGTTATTGTGAAGTTTTAAGTTATGTCCTTTTCCACTAAGGAGTTTCTAGTTTCACATAGATAGATGATATTTATCAAAGTTGTATATCTCCAATGTCGCTGAGCTAAATGCCTACTCTGTGGAAGTGAGTGGAACAGTTTGTAGCTTTGTAATTGTATAAAAAAAATTAAAGCAATGAATGTCAGAATTTGTTAATGTGTTCAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_11116#0 CTAGGATGATGCGGAGCGCAATCCAGTTTCTTTCAAGAAAATGGCCATTCTGGAATAGAA 60 consensus_11116#1 ------------------------------------------------------------ consensus_11116#0 CTGATGGAGCAGATCATTTCTTTGTTGTTCCCATGATTTTGGGGCATGCTTTCACTATCA 120 consensus_11116#1 ------------------------------------------------------------ consensus_11116#0 GGAAGAGAAAGCTATTGTTTGTGGGATACTTCCATTGCTCCGCCGTGCCACATTGGTTCA 180 consensus_11116#1 ------------------------------------------------------------ consensus_11116#0 TTTTTTTGGACAGAAGAACCATGTGTGCTTGAAGGAGGGTTCTATCACTATACCACCATA 240 consensus_11116#1 ------------------------------------------------------------ consensus_11116#0 TGCGCCTCCTCAGAAAATGCAAGCTCACTTGATTCCTCCTGATACTCCCCGTTCAATCTT 300 consensus_11116#1 ------------------------------------------------------------ consensus_11116#0 TGTTTACTTCAGAGGCCTGTTCTATGACAATGGGAATGACCCTGAGGGTGGGTATTATGC 360 consensus_11116#1 ------------------------------------------------------------ consensus_11116#0 AAGAGGTGCCCGAGCTTCACTGTGGGAGAATTTCAAGAACAATCCCCTCTTCGACATTTC 420 consensus_11116#1 ------------------------------------------------------------ consensus_11116#0 TACGGAACACCCAGCTACTTACTATGAAGATATGCAGCGCTCAGTCTTCTGCTTGTCCCC 480 consensus_11116#1 ------------------------------------------------------------ consensus_11116#0 CTTGGGATGGGCACCATGGAGCCCTAGATTGGTGGAGGCTGTAGTTNTCGGTTGCATTCC 540 consensus_11116#1 ------------------------------------------------------------ consensus_11116#0 AGTCATCATAGCTGATGATATTGTGCTTCCGTTTGCTGACGCAATCCCATGGGACGAAAT 600 consensus_11116#1 ------------------------------------------------------------ consensus_11116#0 CGGTGTTTTTGTTGACGAGGAGGATGTTCCAAGGCTAGACTCAATCCTCACATCCATCCC 660 consensus_11116#1 --------------------AGGATGTTCCAAGGCTAGANTCAATCCTCACATCCATCCC 40 ******************* ******************** consensus_11116#0 AATTGATGATATCCTAAGGAAGCAAAGATTACTCGCCAATCCATCAATGAAACAGGCCAT 720 consensus_11116#1 AATTGATGATANCCTAAGGAAGCAAAGATTACTCGCCAATCCATCAATGAAACAGGCCAT 100 *********** ************************************************ consensus_11116#0 GTTGTTTCCGCAGCCAGCACAACCTAGAGATGCATTCCATCAGATCCTCAACGGCCTTGC 780 consensus_11116#1 GTTGTTTCCGCAGCCAGCACAACCTAGAGATGCATTCCATCAGATCCTCAACGGCCTTGC 160 ************************************************************ consensus_11116#0 TCGGAAGCTCCCACACCCAGACAGTGTATACTTAAAGCCAGGCGAGAAGCATCTCAACTG 840 consensus_11116#1 TCGGAAGCTCCCACACCCAGACAGTGTATACTTAAAGCCAGGCGAGAAGCATCTCAACTG 220 ************************************************************ consensus_11116#0 GACTGCGGGGCCTGTAGCAGATCTGAAACCTTGGAAATAGAAAAGCTCACATGAAAAACT 900 consensus_11116#1 GACTGCGGGGCCTGTAGCAGATCTGAAACCTTGGAAATAGAAAAGCTCACATGAAAAACT 280 ************************************************************ consensus_11116#0 CGGCTTTGATGTTATTGTGAAGTTTTAAGTTATGTCCTTTTCCACTGAGGAGTTTCTAGT 960 consensus_11116#1 CGGCTTTGATGTTATTGTGAAGTTTTAAGTTATGTCCTTTTCCACTGAGGAGTTTCTAGT 340 ************************************************************ consensus_11116#0 TTCACATAGCTAGATGATATTTATCAAAGTTGTATATCTCCAATGTCGCTGAGCTAAATG 1020 consensus_11116#1 TTCACATAGCTAGATGATATTTATCAAAGTTGTATATCTCCAATGTCGCTGAGCTAAATG 400 ************************************************************ consensus_11116#0 CCTACTCTGTGGAAGTGAGTGGAACAGTTTGTAGCTTTGTAATTGTATAAAAAAAATTAA 1080 consensus_11116#1 CCTACTCTGTGGAAGTGAGTGGAACAGTTTGTAGCTTTGTAATTGTATAAAAAAAATTAA 460 ************************************************************ consensus_11116#0 AGCAATGAATGTCAGAATTTGTTCTTGTGTTCACTAAACTAGCTGGGTGACCCGCGCAAT 1140 consensus_11116#1 AGCAATGAATGTCAGAATTAAAAAAAAAAAAAAAAAA----------------------- 497 ******************* * ** consensus_11116#0 TGCGCGGCTAGCACCCATAGAAAAGTATATATATTTTAA 1179 consensus_11116#1 --------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||