Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 11116 cluster # 11116       Sequences # 8       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_11116#0 length = 1179 sequences # 6  
consensus_11116#1 length = 497 sequences # 2  

consensusID : consensus_11116#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 1179
fasta sequence
                              [CTAGGATGATGCGGAGCGCAATCCAGTTTCTTTCAAGAAAATGGCCATTCTGGAATAGAACTGATGGAGCAGATCATTTCTTTGTTGTTCCCATGATTTTGGGGCATGCTTTCACTATCAGGAAGAGAAAGCTATTGTTTGTGGGATACTTCCATTGCTCCGCCGTGCCACATTGGTTCATTTTTTTGGACAGAAGAACCATGTGTGCTTGAAGGAGGGTTCTATCACTATACCACCATATGCGCCTCCTCAGAAAATGCAAGCTCACTTGATTCCTCCTGATACTCCCCGTTCAATCTTTGTTTACTTCAGAGGCCTGTTCTATGACAATGGGAATGACCCTGAGGGTGGGTATTATGCAAGAGGTGCCCGAGCTTCACTGTGGGAGAATTTCAAGAACAATCCCCTCTTCGACATTTCTACGGAACACCCAGCTACTTACTATGAAGATATGCAGCGCTCAGTCTTCTGCTTGTCCCCCTTGGGATGGGCACCATGGAGCCCTAGATTGGTGGAGGCTGTAGTTNTCGGTTGCATTCCAGTCATCATAGCTGATGATATTGTGCTTCCGTTTGCTGACGCAATCCCATGGGACGAAATCGGTGTTTTTGTTGACG-AGGAGGATGTTCCAAGGCTAGACTCAATCCTCACATCCATCCCAATTGATGATATCCTAAGGAAGCAAAGATTACTCGCCAATCCATCAATGAAACAGGCCATGTTGTTTCCGCAGCCAGCACAACCTAGAGATGCATTCCATCAGATCCTCAACGGCCTTGCTCGGAAGCTCCCACACCCAGACAGTGTATACTTAAAGCCAGGCGAGAAGCATCTCAACTGGACTGCGGGGCCTGTAGCAGATCTGAAACCTTGGAAATAGAAAAGCTCACATGAAAAACTCGGCTTTGATGTTATTGTGAAGTTTTAAGTTATGTCCTTTTCCACTGAGGAGTTTCTAGTTTCACATAGCTAGATGATATTTATCAAAGTTGTATATCTCCAATGTCGCTGAGCTAAATGCCTACTCTGTGGAAGTGAGTGGAACAGTTTGTAGCTTTGTAATTGTATAAAAAAAATTAAAGCAATGAATGTCAGAATTTGTTCTTGTGTTCACTAAACTAGCTGGGTGACCCGCGCAATTGCGCGGCTAGCACCCATAGAAAAGTATATATATTTTAA]

[+] EMBL CF331937             [CTAGGATGATGCGGAGCGCAATCCAGTTTCTTTCAAGAAAATGGCCATTCTGGAATAGAACTGATGGAGCAGATCATTTCTTTGTTGTTCCCATGATTTTGGGGCATGCTTTCACTATCAGGAAGAGAAAGCTATTGTTTGTGGGATACTTCCATTGCTCCGCCGTGCCACATTGGTTCATTTTTTTGGACAGAAGAACCATGTGTGCTTGAAGGAGGGTTCTATCACTATACCACCATATGCGCCTCCTCAGAAAATGCAAGCTCACTTGATTCCTCCTGATACTCCCCGTTCAATCTTTGTTTACTTCAGAGGCCTGTTCTATGACAATGGGAATGACCCTGAGGGTGGGTATTATGCAAGAGGTGCCCGAGCTTCACTGTGGGAGAATTTCAAGAACAATCCCCTCTTCGACATTTCTACGGAACACCCAGCTACTTACTATGAAGATATGCAGCGCTCAGTCTTCTGCTTGTCCCCCTTGGGATGGGCACCATGGAGCCCTAGATTGGTGGAGGCTGTAGTTNTCGGTTGCATTCCAGTCATCATAGCTGATGATATTGTGCTTCCGTTTGCTGACGCAATCCCATGGGACGAAATCGGTG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL CA999220             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         TCCAGTCATCATAGCTGATGATATTGTGCTTCCGTTTGCTGACGCAATCCCATGGGACGAAATCGGTGTTTTTGTTGACG AGGAGGATGTTCCAAGGCTAGACTCAATCCTCACATCCATCCCAATTGATGATATCCTAAGGAAGCAAAGATTACTCGCCAATCCATCAATGAAACAGGCCATGTTGTTTCCGCAGCCAGCACAACCTAGAGATGCATTCCATCAGATCCTCAACGGCCTTGCTCGGAAGCTCCCACACCCAGACAGTGTATACTTAAAGCCAGGCGAGAAGCATCTCAACTGGACTGCGGGGCCTGTAGCAGATCTGAAACCTTGGAAATAGAAAAGCTCACATGAAAAACTCGGCTTTGATGTTATTGTGAAGTTTTAAGTTATGTCCTTTTCCACTGAGGAGTTTCTAGTTTCACATAGCTAGATGATATTTATCAAAGTTGTATATCTCCAATGTCGCTGAGCTAAATGCCTACTCTGTGGAAGTGAGTGGAACAGTTTGTAGCTTTGTAATTGTATAAAAAAAATTAAAGCAATGAATGTCAGAATTTGTTCTTGTGTTCACTAAACTAGCTGGGTGACCCGCGCAATTGCGCGGCTAGCACCCATAGAAAAGTATATATATTTTAA]
[+] EMBL C28418               [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    gnACGNAGGAGGATGTTCCAAGGCTAGACTCAATCCTCACATCCATCCCAATTGATGATATCCTAAGGAAGCAAAGATTACTCGCCAATCCATCAATGAAACAGGCCATGTTGTTTCCGCAGCCAGCACAACCTAGAGATGCATTCCATCAGATCCTCAACGGCCTTGCTCGGAAGCTCCCACACCCAGACAGTGTATACTTAAAGCCAGGCGAGAAGCATCTCAACTGGACTGCGGGGCCTGTAGCAGATCTGAAACCTTGGAAATAGAAAAGCTCACATGAAAAACTCGGCTTTGATGTTATTGTGAAGNTTTAAGTTATGTCCTTTTCCACTGAGGAGGTTCTAGTTTCACATAGCTAGATGATATTTATCAAAGTTGTAT                                                                                                                                                                                        ]
[-] EMBL BI305489             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   CCAATTGATGATATCCTAAGGAAGCAAAGATTACTCGCCAATCCATCAATGAAACAGGCCATGTTGTTTCCGCAGCCAGCACAACCTAGAGATGCATTCCATCAGATCCTCAACGGCCTTGCTCGGAAGCTCCCACACCCAGACAGTGTATACTTAAAGCCAGGCGAGAAGCATCTCAACTGGACTGCGGGGCCTGTAGCAGATCTGAAACCTTGGAAATAGAAAAGCTCACATGAAAAACTCGGCTTTGATGTTATTGTGAAGTTTTAAGTTATGTCCTTTTCCACTGAGGAGTTTCTAGTTTCACATAGCTAGATGATATTTATCAAAGTTGTATATCTCCAATGTCGCTGAGCTAAATGCCTACTCTGTGGAAGTGAGTGGAACAGTTTGTAGCTTTGTAATTGTATAAAAAAAATTAAAGCAATGAATGTCAGAATTTGTTCTT                                                                         ]
[-] EMBL BI305969             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   CCAATTGATGATATCCTAAGGAAGCAAAGATTACTCGCCAATCCATCAATGAAACAGGCCATGTTGTTTCCGCAGCCAGCACAACCTAGAGATGCATTCCATCAGATCCTCAACGGCCTTGCTCGGAAGCTCCCACACCCAGACAGTGTATACTTAAAGCCAGGCGAGAAGCATCTCAACTGGACTGCGGGGCCTGTAGCAGATCTGAACCCTTGGAAATAGAAAAGCTCACATGAAAAACTCGGCTTTGATGTTATTGTGAAGTTTTAAGTTATGTCCTTTTCCACTGAGGAGTTTCTAGTTTCACATAGCTAGATGATATTTATCAAAGTTGTATATCTCCAATGTCGCTGAGCTAAATGCCTACTCTGTGGAAGTGAGTGGAACAGTTTGTAGCTTTGTAATTGTATAAAAAAAATTAAAGCAATGAATGTCAGAATTTGTTCTT                                                                         ]
[-] EMBL CF331936             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              AAAGCCAGGCGAGAAGCATCTCAACTGGACTGCGGGGCCTGTAGCAGATCTGAAACCTTGGAAATAGAAAAGCTCACATGAAAAACTCGGCTTTGATGTTATTGTGAAGTTTTAAGTTATGTCCTTTTCCACTGAGGAGTTTCTAGTTTCACATAGCTAGATGATATTTATCAAAGTTGTATATCTCCAATGTCGCTGAGCTAAATGCCTACTCTGTGGAAGTGAGTGGAACAGTTTGTAGCTTTGTAATTGTATAAAAAAAATTAAAGCAATGAATGTCAGAATTTGTTCTTGTGTTC CAAAAaaaaaaaaa                                                    ]


>consensus_11116#0 CTAGGATGATGCGGAGCGCAATCCAGTTTCTTTCAAGAAAATGGCCATTCTGGAATAGAA CTGATGGAGCAGATCATTTCTTTGTTGTTCCCATGATTTTGGGGCATGCTTTCACTATCA GGAAGAGAAAGCTATTGTTTGTGGGATACTTCCATTGCTCCGCCGTGCCACATTGGTTCA TTTTTTTGGACAGAAGAACCATGTGTGCTTGAAGGAGGGTTCTATCACTATACCACCATA TGCGCCTCCTCAGAAAATGCAAGCTCACTTGATTCCTCCTGATACTCCCCGTTCAATCTT TGTTTACTTCAGAGGCCTGTTCTATGACAATGGGAATGACCCTGAGGGTGGGTATTATGC AAGAGGTGCCCGAGCTTCACTGTGGGAGAATTTCAAGAACAATCCCCTCTTCGACATTTC TACGGAACACCCAGCTACTTACTATGAAGATATGCAGCGCTCAGTCTTCTGCTTGTCCCC CTTGGGATGGGCACCATGGAGCCCTAGATTGGTGGAGGCTGTAGTTNTCGGTTGCATTCC AGTCATCATAGCTGATGATATTGTGCTTCCGTTTGCTGACGCAATCCCATGGGACGAAAT CGGTGTTTTTGTTGACGAGGAGGATGTTCCAAGGCTAGACTCAATCCTCACATCCATCCC AATTGATGATATCCTAAGGAAGCAAAGATTACTCGCCAATCCATCAATGAAACAGGCCAT GTTGTTTCCGCAGCCAGCACAACCTAGAGATGCATTCCATCAGATCCTCAACGGCCTTGC TCGGAAGCTCCCACACCCAGACAGTGTATACTTAAAGCCAGGCGAGAAGCATCTCAACTG GACTGCGGGGCCTGTAGCAGATCTGAAACCTTGGAAATAGAAAAGCTCACATGAAAAACT CGGCTTTGATGTTATTGTGAAGTTTTAAGTTATGTCCTTTTCCACTGAGGAGTTTCTAGT TTCACATAGCTAGATGATATTTATCAAAGTTGTATATCTCCAATGTCGCTGAGCTAAATG CCTACTCTGTGGAAGTGAGTGGAACAGTTTGTAGCTTTGTAATTGTATAAAAAAAATTAA AGCAATGAATGTCAGAATTTGTTCTTGTGTTCACTAAACTAGCTGGGTGACCCGCGCAAT TGCGCGGCTAGCACCCATAGAAAAGTATATATATTTTAA



consensusID : consensus_11116#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 497
fasta sequence
                              [AGGATGTTCCAAGGCTAGANTCAATCCTCACATCCATCCCAATTGATGATANCCTAAGGAAGCAAAGATTACTCGCCAATCCATCAATGAAACAGGCCATGTTGTTTCCGCAGCCAGCACAACCTAGAGATGCATTCCATCAGATCCTCAACGGCCTTGCTCGGAAGCTCCCACACCCAGACAGTGTATACTTAAAGCCAGGCGAGAAGCATCTCAACTGGACTGCGGGGCCTGTAGCAGATCTGAAACCTTGGAAATAGAAAAGCTCACATGAAAAACTCGGCTTTGATGTTATTGTGAAGTTTTAAGTTATGTCCTTTTCCACTGAGGAGTTTCTAGTTTCACATAGCTAGATGATATTTATCAAAGTTGTATATCTCCAATGTCGCTGAGCTAAATGCCTACTCTGTGGAAGTGAGTGGAACAGTTTGTAGCTTTGTAATTGTATAAAAAAAATTAAAGCAATGAATGTCAGAA----TTAA-------AAAAAAAAAAAAAAAA]

[+] EMBL AU092938             [AGGATGTTCCAAGGCTAGANTCAATCCTCACATCCATCCCAATTGATGATANCCTAAGGAAGCAAAGATTACTCGCCAATCCATCAATGAAACAGGCCATGTTGTTTCCGCAGCCAGCACAACCTAGAGATGCATTCCATCAGATCCTCAACGGCCTTGCTCGGAAGCTCCCACACCCAGACAGTGTATACTTAAAGCCAGGCGAGAAGCATCTCAACTGGACTGCGGGGCCTGTAGCAGATCTGAAACCTTGGAAATAGAAAAGCTCACATGAAAAACTCGGCTTTGATGTTATTGTGAAGTTTTAAGTTATGTCCTTTTCCACTGAGGAGTTTCTAGTTTCACATAGCTAGATGATATTTATCAAAGTTGTATATCTCCAATGTCGCTGAGCTAAATGCCTACTCTGTGGAAGTGAGTGGAACAGTTTGTAGCTTTGTAATTGTATAAAAAAAATTAAAGCAATGAATGTCAGAA    TTAA       AAAAAAAAAAAAAAA ]
[-] EMBL CF278722             [                                                                                                                                          ATCAGATCCTCAACGGCCTTGCTCGGAAGCTCCCACACCCAGACAGTGTATACTTAAAGCCAGGCGAGAAGCATCTCAACTGGACTGCGGGGCCTGTAGCAGATCTGAAACCTTGGAAATAGAAAAGCTCACATGAAAAACTCGGCTTTGATGTTATTGTGAAGTTTTAAGTTATGTCCTTTTCCACTAAGGAGTTTCTAGTTTCACATAGATAGATGATATTTATCAAAGTTGTATATCTCCAATGTCGCTGAGCTAAATGCCTACTCTGTGGAAGTGAGTGGAACAGTTTGTAGCTTTGTAATTGTATAAAAAAAATTAAAGCAATGAATGTCAGAATTTGTTAATGTGTTCAAAAAAAAAAAAAAAA]


>consensus_11116#1 AGGATGTTCCAAGGCTAGANTCAATCCTCACATCCATCCCAATTGATGATANCCTAAGGA AGCAAAGATTACTCGCCAATCCATCAATGAAACAGGCCATGTTGTTTCCGCAGCCAGCAC AACCTAGAGATGCATTCCATCAGATCCTCAACGGCCTTGCTCGGAAGCTCCCACACCCAG ACAGTGTATACTTAAAGCCAGGCGAGAAGCATCTCAACTGGACTGCGGGGCCTGTAGCAG ATCTGAAACCTTGGAAATAGAAAAGCTCACATGAAAAACTCGGCTTTGATGTTATTGTGA AGTTTTAAGTTATGTCCTTTTCCACTGAGGAGTTTCTAGTTTCACATAGCTAGATGATAT TTATCAAAGTTGTATATCTCCAATGTCGCTGAGCTAAATGCCTACTCTGTGGAAGTGAGT GGAACAGTTTGTAGCTTTGTAATTGTATAAAAAAAATTAAAGCAATGAATGTCAGAATTA AAAAAAAAAAAAAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_11116#0      CTAGGATGATGCGGAGCGCAATCCAGTTTCTTTCAAGAAAATGGCCATTCTGGAATAGAA 60
consensus_11116#1      ------------------------------------------------------------
                                                                                   

consensus_11116#0      CTGATGGAGCAGATCATTTCTTTGTTGTTCCCATGATTTTGGGGCATGCTTTCACTATCA 120
consensus_11116#1      ------------------------------------------------------------
                                                                                   

consensus_11116#0      GGAAGAGAAAGCTATTGTTTGTGGGATACTTCCATTGCTCCGCCGTGCCACATTGGTTCA 180
consensus_11116#1      ------------------------------------------------------------
                                                                                   

consensus_11116#0      TTTTTTTGGACAGAAGAACCATGTGTGCTTGAAGGAGGGTTCTATCACTATACCACCATA 240
consensus_11116#1      ------------------------------------------------------------
                                                                                   

consensus_11116#0      TGCGCCTCCTCAGAAAATGCAAGCTCACTTGATTCCTCCTGATACTCCCCGTTCAATCTT 300
consensus_11116#1      ------------------------------------------------------------
                                                                                   

consensus_11116#0      TGTTTACTTCAGAGGCCTGTTCTATGACAATGGGAATGACCCTGAGGGTGGGTATTATGC 360
consensus_11116#1      ------------------------------------------------------------
                                                                                   

consensus_11116#0      AAGAGGTGCCCGAGCTTCACTGTGGGAGAATTTCAAGAACAATCCCCTCTTCGACATTTC 420
consensus_11116#1      ------------------------------------------------------------
                                                                                   

consensus_11116#0      TACGGAACACCCAGCTACTTACTATGAAGATATGCAGCGCTCAGTCTTCTGCTTGTCCCC 480
consensus_11116#1      ------------------------------------------------------------
                                                                                   

consensus_11116#0      CTTGGGATGGGCACCATGGAGCCCTAGATTGGTGGAGGCTGTAGTTNTCGGTTGCATTCC 540
consensus_11116#1      ------------------------------------------------------------
                                                                                   

consensus_11116#0      AGTCATCATAGCTGATGATATTGTGCTTCCGTTTGCTGACGCAATCCCATGGGACGAAAT 600
consensus_11116#1      ------------------------------------------------------------
                                                                                   

consensus_11116#0      CGGTGTTTTTGTTGACGAGGAGGATGTTCCAAGGCTAGACTCAATCCTCACATCCATCCC 660
consensus_11116#1      --------------------AGGATGTTCCAAGGCTAGANTCAATCCTCACATCCATCCC 40
                                           ******************* ********************

consensus_11116#0      AATTGATGATATCCTAAGGAAGCAAAGATTACTCGCCAATCCATCAATGAAACAGGCCAT 720
consensus_11116#1      AATTGATGATANCCTAAGGAAGCAAAGATTACTCGCCAATCCATCAATGAAACAGGCCAT 100
                       *********** ************************************************

consensus_11116#0      GTTGTTTCCGCAGCCAGCACAACCTAGAGATGCATTCCATCAGATCCTCAACGGCCTTGC 780
consensus_11116#1      GTTGTTTCCGCAGCCAGCACAACCTAGAGATGCATTCCATCAGATCCTCAACGGCCTTGC 160
                       ************************************************************

consensus_11116#0      TCGGAAGCTCCCACACCCAGACAGTGTATACTTAAAGCCAGGCGAGAAGCATCTCAACTG 840
consensus_11116#1      TCGGAAGCTCCCACACCCAGACAGTGTATACTTAAAGCCAGGCGAGAAGCATCTCAACTG 220
                       ************************************************************

consensus_11116#0      GACTGCGGGGCCTGTAGCAGATCTGAAACCTTGGAAATAGAAAAGCTCACATGAAAAACT 900
consensus_11116#1      GACTGCGGGGCCTGTAGCAGATCTGAAACCTTGGAAATAGAAAAGCTCACATGAAAAACT 280
                       ************************************************************

consensus_11116#0      CGGCTTTGATGTTATTGTGAAGTTTTAAGTTATGTCCTTTTCCACTGAGGAGTTTCTAGT 960
consensus_11116#1      CGGCTTTGATGTTATTGTGAAGTTTTAAGTTATGTCCTTTTCCACTGAGGAGTTTCTAGT 340
                       ************************************************************

consensus_11116#0      TTCACATAGCTAGATGATATTTATCAAAGTTGTATATCTCCAATGTCGCTGAGCTAAATG 1020
consensus_11116#1      TTCACATAGCTAGATGATATTTATCAAAGTTGTATATCTCCAATGTCGCTGAGCTAAATG 400
                       ************************************************************

consensus_11116#0      CCTACTCTGTGGAAGTGAGTGGAACAGTTTGTAGCTTTGTAATTGTATAAAAAAAATTAA 1080
consensus_11116#1      CCTACTCTGTGGAAGTGAGTGGAACAGTTTGTAGCTTTGTAATTGTATAAAAAAAATTAA 460
                       ************************************************************

consensus_11116#0      AGCAATGAATGTCAGAATTTGTTCTTGTGTTCACTAAACTAGCTGGGTGACCCGCGCAAT 1140
consensus_11116#1      AGCAATGAATGTCAGAATTAAAAAAAAAAAAAAAAAA----------------------- 497
                       *******************             *  **                       

consensus_11116#0      TGCGCGGCTAGCACCCATAGAAAAGTATATATATTTTAA 1179
consensus_11116#1      ---------------------------------------
                                                              




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)