These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11117#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1292 fasta sequence [GAAGGAGTAGAAAATTTTTCCGCCGCATCTGGAGCTCTAAAACCCAAACCCTAGCCACTGCGCCGCCGCCGTCGCCTTCGCCGCCGGCCCGCCGCCGCCGCTTCAGCCATGAACGCCTTTCGGTTCCTCGGGGACATGACCCACCTCTTCTCGGTCCTCGTCCTCCTGCTCAAGATCTACGCCACGAAATCCTGCTCAGGGGTGTCGAGGAAGACGCAGGAGCTGTACATGCTGGTGTTCGTGGCGAGGTACATG-GACCTGTTCACGGACTACATCTCGCTCTACAACTCGGTGATGAAGGTGGTTTTCATCACCAGCTCGGCGGCGATCGTG-TGGTGCATGCGGCGCCACCCACAGGTGCGGCGCACG-TA-CGACAAGGATCAGGAC-ACATTCCGCCATGTGGTGCTCGTCGCCGCTGCCTTCGTGCTCGCATTGCTCTTCAACGAGCGGTTCACCTTCCGCGAGATCTGCTGGGCATTTTCGATTTACTTGGAGGCAGTGGCAATTCTCCCTCAGTTAGTTTTGCTGCAGAGAAGTAGAAATGTGGACAACTTGACTGGACAATATGTATTCTTCCTAGGGGCCTACCGTGCATTTTACATCCTAAACTGGATTTACCGTTACTTCACTGAGGGTCA-CCACAGCAGATGGATCCCTTGGATTGCTGGTTTGGTCCAAACAGCTCTTTATGCGGATTTCTTCTACTACTATTTCTTAAGTTGGAAGAACAATGTGAAGCTTGAGTTGCCTGCTTGATAGTTCTTCGCC-ACGCCAGAAAATGTGCACATCACATGAGAATTATCGAGATTAGTTGATGCTGGCAGAGACTTGGTAATGAAGTGGGCAGTTGCAATTTGTACTGTTGACTATGAAAATTGATGATGTTCATG-TGATGGTTTCCCTTGGCAAAGGCTATTACGTTTCAGAAGCTAACAGTTGCTACTGCACAGAAGTAGACTAGTTCCTTTTTGGACCTCATACTGAGATGGAAAATCACACCCAATTCATTTGGCTTGTTGTTTGCAGCTCTATTACACTTGGTGTAAACAAACAGTGTGATTTCCGGTGTCTTGTAAAAACCAATGCACTCCAAACTACTCCGAAATACCAGAAATATTGATTGTGCTTCCTGGATCCTAAAAAAGCTACTTCAGCATTTGCCTGTGGAACAGATCAACTGTTCAATTTTAGCTTTTCAATCGTGGGAGTTGTCATGTGATGATTAAACTACTGAATTATAATCTGATTGTCGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL CF313830 [GAAGGAGTAGAAAATTTTTCCGCCGCATCTGGAGCTCTAAAACCCAAACCCTAGCCACTGCGCCGCCGCCGTCGCCTTCGCCGCCGGCCCGCCGCCGCCGCTTCAGCCATGAACGCCTTTCGGTTCCTCGGGGACATGACCCACCTCTTCTCGGTCCTCGTCCTCCTGCTCAAGATCTACGCCACGAAATCCTGCTCAGGGGTGTCGAGGAAGACGCAGGAGCTGTACATGCTGGTGTTCGTGGCGAGGTACATGNGACCTGTTCACGGACTACATCTCGCTCTACAACTCGGTGATGAAGGTGGTTTTCATCACCAGCTCGGCGGCGATCGTG TGGTGCATGCGGCGCCACC ] [+] EMBL CA758943 [ gtgccgcATTTTTCCGCCGCATCTGGAGCTCTAAAACCCAAACCCTAGCCACTGCGCCGCCGCCGTCGCCTTCGCCGCCGGCCCGCCGCCGCCGCTTCAGCCATGAACGCCTTTCGGTTCCTCGGGGACATGACCCACCTCTTCTCGGTCCTCGTCCTCCTGCTCAAGATCTACGCCACGAAATCCTGCTCAGGGGTGTCGAGGAAGACGCAGGAGCTGTACATGCTGGTGTTCGT ] [+] EMBL AK102648 [ TCCGCCGCATCTGGAGCTCTAAAACCCAAACCCTAGCCACTGCGCCGCCGCCGTCGCCTTCGCCGCCGGCCCGCCGCCGCCGCTTCAGCCATGAACGCCTTTCGGTTCCTCGGGGACATGACCCACCTCTTCTCGGTCCTCGTCCTCCTGCTCAAGATCTACGCCACGAAATCCTGCTCAGGGGTGTCGAGGAAGACGCAGGAGCTGTACATGCTGGTGTTCGTGGCGAGGTACATG GACCTGTTCACGGACTACATCTCGCTCTACAACTCGGTGATGAAGGTGGTTTTCATCACCAGCTCGGCGGCGATCGTG TGGTGCATGCGGCGCCACCCACAGGTGCGGCGCACG TA CGACAAGGATCAGGAC ACATTCCGCCATGTGGTGCTCGTCGCCGCTGCCTTCGTGCTCGCATTGCTCTTCAACGAGCGGTTCACCTTCCGCGAGATCTGCTGGGCATTTTCGATTTACTTGGAGGCAGTGGCAATTCTCCCTCAGTTAGTTTTGCTGCAGAGAAGTAGAAATGTGGACAACTTGACTGGACAATATGTATTCTTCCTAGGGGCCTACCGTGCATTTTACATCCTAAACTGGATTTACCGTTACTTCACTGAGGGTCA CCACAGCAGATGGATCCCTTGGATTGCTGGTTTGGTCCAAACAGCTCTTTATGCGGATTTCTTCTACTACTATTTCTTAAGTTGGAAGAACAATGTGAAGCTTGAGTTGCCTGCTTGATAGTTCTTCGCC ACGCCAGAAAATGTGCACATCACATGAGAATTATCGAGATTAGTTGATGCTGGCAGAGACTTGGTAATGAAGTGGGCAGTTGCAATTTGTACTGTTGACTATGAAAATTGATGATGTTCATG TGATGGTTTCCCTTGGCAAAGGCTATTACGTTTCAGAAGCTAACAGTTGCTACTGCACAGAAGTAGACTAGTTCCTTTTTGGACCTCATACTGAGATGGAAAATCACACCCAATTCATTTGGCTTGTTGTTTGCAGCTCTATTACACTTGGTGTAAACAAACAGTGTGATTTCCGGTGTCTTGTAAAAACCAATGCACTCCAAACTACTCCGAAATACCAGAAATATTGATTGTGCTTCCTGGATCCT ] [+] EMBL OSC477 [ TCTAAAACCCAAACCCTAGCCACTGCGCCGCCGCCGTCGCCTTCGCCGCC GNCCGNCGCCGCCGCTTCAGCCATGAACGCCTTTCGGTTCCTCGGGGACATGACCCACCTCTTCTCGGTCCTCGTCCTCCTGCTCAAGATCTACGCCACGAAATCCTGCTCAGGGGTGTCGAGGAAGACGCAGGAGCTGTACATGCTGGTGTTCGTGGCGAGGTACATG GACCTGTTCACGGACTACATCTCGCTCTACAACTCGGTGATGAAGGTGGTTTTCATNACCAGCTCGGCGGCGATCGTGTTGGTGCATGCGGCG CACCCACAGGT CNG GCANGTTACCGACAAGGATCAGGACAACTTTCCGCCATGTGGTGCTCGTGGCCGCTGCC ] [+] EMBL BE040108 [ TAAAACCCAAACCCTAGCCACTGCGCCGCCGCCGTCGCCTTCGCCGCCGGCCCGCCGCCGCCGCTTCAGCCATGAACGCCTTTCGGTTCCTCGGGGACATGACCCACCTCTTCTCGGTCCTCGTCCTCCTGCTCAAGATCTACGCCACGAAATCCTGCTCAGGGGTGTCGAGGAAGACGCAGGAGCTGTACATGCTGGTGTTCGTGGCGAGGTACATG GACCTGTTCACGGACTACATCTCGCTCTACAACTCGGTGATGAAGGTGGTGTTCATCACCAGCTCGGCGGCGATCGTG TGGTGCATGCGGCGCCACCCACAGGTGCGGCGCACG TA CGACAAGGATCAGGAC ACCTTCCGCCATGTGGTGCTCGTCGCCGCTGCCTTCGTGCTCGCATTGCTCTTCAACGAGCGGTTCACCTTCCGCGAGATCTGCTGGGCATTTTCGATTTACTTGGAGGCAGTGGCAATTCTCCCTCAGTTAGTTTTGCTGCAGAGAAGTAGAAATGTGGACAACTTGACTGGACAATATGTATTCTTCCTAGGGGCCTACCGTGCATTTTACATCCTAAACTGGATTTACCGGTACTTCACTGAGGGTCACCCACAGCAGATGGATCCCTTGGATTGCTGGTTTGGTCCAAACAGCTCTTTATGCGGATTTCTTCTACTACTATTTCTTAAGTTGGAAG ACAATGTTGAGCTTGA ATGCCTGCTTGATAG TCTTCGCC CCGCC GAAAATGTGCCCTTC CATGAG ATTATCCGGA TAGTTGATGCT GCAGAGACTT GTAATGAAGT GGCAGTGGC ATTTGTCCTG TGACTTTGAAAA TGAGAATG TCATGTTGA GGTTT CCTTGGC AAGGCT TTACCTTT AAAAACTTACA TTG TTCTGC CCCAAGT GACT TATCC TTTTGGCCCT TTCCTG GATTG AAATC C CCCCATTCt ] [-] EMBL CF313831 [ AGCAGATGGATCCCTTGGATTGCTGGTTTGGTCCAAACAGCTCTTTATGCGGATTTCTTCTACTACTATTTCTTAAGTTGGAAGAACAATGTGAAGCTTGAGTTGCCTGCTTGATAGTTCTTCGCC ACGCCAGAAAATGTGCACATCACATGAGAATTATCGGGATTAGTTGATGCTGGCAGAGACTTGGTAATGAAGTGGGCAGTTGCAATTTGTACTGTTGACTATGAAAATTGATGATGTTCATG TGATGGTTTCCCTTGGCAAAGGCTATTACGTTTCAGAAGCTAACAGTTGCTACTGCACAGAAGTAGACTAGTTCCTTTTTGGACCTCATACTGAGATGGAAAATCACACCCAATTCATTTGGCTTGTTGTTTGCAGCTCTATTACACTTGGTGTAAACAAACAGTGTGATTTCGGGTGTCTTGTAAAAACCAATGCACTCCAAACTACTCCGAAATACCAGAAATATTGATTGTGCTTCCTGGATCCAAAAAAA ] [+] EMBL C99227 [ TAGTTCTTCGCCNACGCCAGAAAATGTGCACATCACATGAGAATTNTCGAGATTAGTTGATGCTGGCAGAGACTTGGT ATGAAGTGGGCAGTTGCAATTTGTACTGTTGACTATGAAAATTGATGATGTTCATG TGATGGTTTCCCTTGGCAAAGGCTATTACGTTTCAGAAGCTAACAGTTGCTACTGCACAGANGTAGACTAGTTCCTTTTTGGNCCTCATACTGAGATGGAAAATCACACCCAATTCATTTGGCTTGTTGTTTGCAGCTCTATTACACTTGGTGTAAACAAACAGTGTGATTTCCGGTGTCTTGTAAAAACCAATGCACTCCAAACTACTCCGAAATACCAGAAATATTGATTGTGCTTCCTGGATCCTCTCAACGCTACTTCAGCATTTGCCTGTGGAACAGATCAACTGTTCAATTTTAGCTTTTCAATCGTGGGAGTTGTCATGTGATGATTAAACTACTGAATTATAATCTGATTGTCGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensusID : consensus_11117#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 344 fasta sequence [TGATGCTGGCAGAGACTTGGTAATGAAGTGGGCAGTTGCAATTTGTACTGTTGACTATGAAAATTGATGATGTTCATGTGATGGTTTCCCTTGGCAAGGCTATTACGTTTCAGAAGCTAACAGTTGCTACTGCACAGAAGTAGACTAGTTCCTTTTTGGACCTCATACTGAGATGGAAAATCACACCCAATTCATTTGGCTTGTTGTTTGCAGCTCTATTACACTTGGTGTAAACAAACAGTGTGATTTCCGGTGTCTTGTAAAAACCAATGCACTCCAAACTACTTGTGTTTCGCCGGTCTTCGACATACCAGAAATATTGATTGTGCTTCCTGGAAAAAAAA] [+] EMBL BQ906077 [TGATGCTGGCAGAGACTTGGTAATGAAGTGGGCAGTTGCAATTTGTACTGTTGACTATGAAAATTGATGATGTTCATGTGATGGTTTCCCTTGGCAAGGCTATTACGTTTCAGAAGCTAACAGTTGCTACTGCACAGAAGTAGACTAGTTCCTTTTTGGACCTCATACTGAGATGGAAAATCACACCCAATTCATTTGGCTTGTTGTTTGCAGCTCTATTACACTTGGTGTAAACAAACAGTGTGATTTCCGGTGTCTTGTAAAAACCAATGCACTCCAAACTACTTGTGTTTCGCCGGTCTTCGACATACCAGAAATATTGATTGTGCTTCCTGGAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_11117#0 GAAGGAGTAGAAAATTTTTCCGCCGCATCTGGAGCTCTAAAACCCAAACCCTAGCCACTG 60 consensus_11117#1 ------------------------------------------------------------ consensus_11117#0 CGCCGCCGCCGTCGCCTTCGCCGCCGGCCCGCCGCCGCCGCTTCAGCCATGAACGCCTTT 120 consensus_11117#1 ------------------------------------------------------------ consensus_11117#0 CGGTTCCTCGGGGACATGACCCACCTCTTCTCGGTCCTCGTCCTCCTGCTCAAGATCTAC 180 consensus_11117#1 ------------------------------------------------------------ consensus_11117#0 GCCACGAAATCCTGCTCAGGGGTGTCGAGGAAGACGCAGGAGCTGTACATGCTGGTGTTC 240 consensus_11117#1 ------------------------------------------------------------ consensus_11117#0 GTGGCGAGGTACATGGACCTGTTCACGGACTACATCTCGCTCTACAACTCGGTGATGAAG 300 consensus_11117#1 ------------------------------------------------------------ consensus_11117#0 GTGGTTTTCATCACCAGCTCGGCGGCGATCGTGTGGTGCATGCGGCGCCACCCACAGGTG 360 consensus_11117#1 ------------------------------------------------------------ consensus_11117#0 CGGCGCACGTACGACAAGGATCAGGACACATTCCGCCATGTGGTGCTCGTCGCCGCTGCC 420 consensus_11117#1 ------------------------------------------------------------ consensus_11117#0 TTCGTGCTCGCATTGCTCTTCAACGAGCGGTTCACCTTCCGCGAGATCTGCTGGGCATTT 480 consensus_11117#1 ------------------------------------------------------------ consensus_11117#0 TCGATTTACTTGGAGGCAGTGGCAATTCTCCCTCAGTTAGTTTTGCTGCAGAGAAGTAGA 540 consensus_11117#1 ------------------------------------------------------------ consensus_11117#0 AATGTGGACAACTTGACTGGACAATATGTATTCTTCCTAGGGGCCTACCGTGCATTTTAC 600 consensus_11117#1 ------------------------------------------------------------ consensus_11117#0 ATCCTAAACTGGATTTACCGTTACTTCACTGAGGGTCACCACAGCAGATGGATCCCTTGG 660 consensus_11117#1 ------------------------------------------------------------ consensus_11117#0 ATTGCTGGTTTGGTCCAAACAGCTCTTTATGCGGATTTCTTCTACTACTATTTCTTAAGT 720 consensus_11117#1 ------------------------------------------------------------ consensus_11117#0 TGGAAGAACAATGTGAAGCTTGAGTTGCCTGCTTGATAGTTCTTCGCCACGCCAGAAAAT 780 consensus_11117#1 ------------------------------------------------------------ consensus_11117#0 GTGCACATCACATGAGAATTATCGAGATTAGTTGATGCTGGCAGAGACTTGGTAATGAAG 840 consensus_11117#1 --------------------------------TGATGCTGGCAGAGACTTGGTAATGAAG 28 **************************** consensus_11117#0 TGGGCAGTTGCAATTTGTACTGTTGACTATGAAAATTGATGATGTTCATGTGATGGTTTC 900 consensus_11117#1 TGGGCAGTTGCAATTTGTACTGTTGACTATGAAAATTGATGATGTTCATGTGATGGTTTC 88 ************************************************************ consensus_11117#0 CCTTGGCAAAGGCTATTACGTTTCAGAAGCTAACAGTTGCTACTGCACAGAAGTAGACTA 960 consensus_11117#1 CCTTGGCAA-GGCTATTACGTTTCAGAAGCTAACAGTTGCTACTGCACAGAAGTAGACTA 147 ********* ************************************************** consensus_11117#0 GTTCCTTTTTGGACCTCATACTGAGATGGAAAATCACACCCAATTCATTTGGCTTGTTGT 1020 consensus_11117#1 GTTCCTTTTTGGACCTCATACTGAGATGGAAAATCACACCCAATTCATTTGGCTTGTTGT 207 ************************************************************ consensus_11117#0 TTGCAGCTCTATTACACTTGGTGTAAACAAACAGTGTGATTTCCGGTGTCTTGTAAAAAC 1080 consensus_11117#1 TTGCAGCTCTATTACACTTGGTGTAAACAAACAGTGTGATTTCCGGTGTCTTGTAAAAAC 267 ************************************************************ consensus_11117#0 CAATGCACTCCAAACTACTC----------------CGAAATACCAGAAATATTGATTGT 1124 consensus_11117#1 CAATGCACTCCAAACTACTTGTGTTTCGCCGGTCTTCGACATACCAGAAATATTGATTGT 327 ******************* *** ******************** consensus_11117#0 GCTTCCTGGATCCTAAAAAAGCTACTTCAGCATTTGCCTGTGGAACAGATCAACTGTTCA 1184 consensus_11117#1 GCTTCCTGGA----AAAAAAA--------------------------------------- 344 ********** ****** consensus_11117#0 ATTTTAGCTTTTCAATCGTGGGAGTTGTCATGTGATGATTAAACTACTGAATTATAATCT 1244 consensus_11117#1 ------------------------------------------------------------ consensus_11117#0 GATTGTCGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1292 consensus_11117#1 ------------------------------------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||