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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11118#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1653 fasta sequence
[CCTTCCCCTTCCCCCCCTCCGCCGCCTCCTCCGCCGCGAAACGAAAGGCGAGCTCTCTCTCTCTCTCTCTCCGCGGCGCGGTCAAAACCCTAGCGCGCGAGGAGGCCCCCCCCATGGCGCAGCAGCTCTCCGCCCCCTTCCGCGCCGCCGCGGCCGCCGGATCCCGCGCCTCCGCCGCCGCCGCCGATCCCGCCAAGGTGTTACGCTTGAGAAGCGCTGGCTCAGCTCAGTTCACCTCCATCGCAGCTTCCTCTTCATTTGCTAGGAACATTGAGCCGCTGAGAGCGATAGCTACTCAGGCACCCCCTGCCGTCCCACAATATTCGAGTGGCGAGAAGACAAAGGTTGGCATCAATGGGTTTGGGCGAATTGGGAGGTTGGTCCTGCGTATTGCAACCAGTAGAGATGATATTGAAGTTGTTGCTGTCAATGATCCTTTCATTGATGCTAAATACATGGCCTACATGTTCAAGTATGACTCCACTCATGGTCCATTTAAAGGCTCCATTAAGGTTGTGGATGATTCAACCCTGGAGATCAATGGAAAGAAAGTCACAATCACTAGCAAAAGAGATCCAGCAGATATTCCTTGGGGTAACTTTGGAGCTGAGTATGTTGTTGAATCTTCAGGTGTTTTTACAACAACTGAAAAGGCATCGGCACATTTGAAGGGCGGTGCTAAGAAAGTTGTGATATCTGCTCCATCAGCAGATGCTCCAATGTTTGTCGTTGGAGTAAATGAGAAGAGCTATGATCCTAAAATGAATGTTGTTTCTAACGCAAGTTGTACTACCAACTGTCTTGCTCCTCTTGCCAAGGTTGTCCATGAGGAATTTGGCATTGTTGAGGGTCTCATGACAACTGTTCATGCCACAACAGCCACCCAGAAGACTGTCGATGGCCCTTCAATGAAAGATTGGAGAGGAGGGCGTGGTGCTGCTCAAAACATAATTCCTAGCTCCACTGGTGCAGCCAAGGCTGTTGGGAAAGTCCTCCCTGAGCTAAATGGAAAGCTCACTGGTATGGCCTTCCGAGTTCCAACACCAAATGTGTCTGTTGTCGACTTGACCTGCCGGATTGAAAAAAGTGCATCCTATGACGATGTGAAAGCAGCCATCAAGGCAGCATCAGAGGGTGCACTGAAAGGTATTCTAGGTTACACAGATGAGGATGTGGTTTCCAATGACTTCGTTGGTGATGCAAGGTCAAGCATCTTTGATGCCAAGGCTGGTATTGGACTGAGCTCTTCCTTCATGAAGCTTGTGTCATGGTATGACAACGAGTGGGGCTACAGCAACCGTGTGTTGGATCTGATTGCCCACATGGCTCTTGTCAACGCCAAGCACTGATTTGTTGAAAATCCTCCTCCGATAGTATCTAGCTAGGAAAGGCTGCAATTTTGACGGTCTCTTTCTGTTGTCTTGGAATAAGATGTAAACTTGGAAACAAAGCAAAAAAAGAATGGACATTGATGTCCATGACATTGTTTGTAGCAGGCGGTGAAATTTACTCTGTATCGACCTGGGCAAGCGGAACTGTTGAGTGAACCATATGTCGGCAA-CCTGATTGATTCATTGAGTCCAATGCTATGCCATTCTATATTTACTTTAAACATGCTTGTTTCATGCCAGAAATGTTCAACAGACAATTGGC]
[+] EMBL AK070032 [CCTTCCCCTTCCCCCCCTCCGCCGCCTCCTCCGCCGCGAAACGAAAGGCGAGCTCTCTCTCTCTCTCTCTCCGCGGCGCGGTCAAAACCCTAGCGCGCGAGGAGGCCCCCCCCATGGCGCAGCAGCTCTCCGCCCCCTTCCGCGCCGCCGCGGCCGCCGGATCCCGCGCCTCCGCCGCCGCCGCCGATCCCGCCAAGGTGTTACGCTTGAGAAGCGCTGGCTCAGCTCAGTTCACCTCCATCGCAGCTTCCTCTTCATTTGCTAGGAACATTGAGCCGCTGAGAGCGATAGCTACTCAGGCACCCCCTGCCGTCCCACAATATTCGAGTGGCGAGAAGACAAAGGTTGGCATCAATGGGTTTGGGCGAATTGGGAGGTTGGTCCTGCGTATTGCAACCAGTAGAGATGATATTGAAGTTGTTGCTGTCAATGATCCTTTCATTGATGCTAAATACATGGCCTACATGTTCAAGTATGACTCCACTCATGGTCCATTTAAAGGCTCCATTAAGGTTGTGGATGATTCAACCCTGGAGATCAATGGAAAGAAAGTCACAATCACTAGCAAAAGAGATCCAGCAGATATTCCTTGGGGTAACTTTGGAGCTGAGTATGTTGTTGAATCTTCAGGTGTTTTTACAACAACTGAAAAGGCATCGGCACATTTGAAGGGCGGTGCTAAGAAAGTTGTGATATCTGCTCCATCAGCAGATGCTCCAATGTTTGTCGTTGGAGTAAATGAGAAGAGCTATGATCCTAAAATGAATGTTGTTTCTAACGCAAGTTGTACTACCAACTGTCTTGCTCCTCTTGCCAAGGTTGTCCATGAGGAATTTGGCATTGTTGAGGGTCTCATGACAACTGTTCATGCCACAACAGCCACCCAGAAGACTGTCGATGGCCCTTCAATGAAAGATTGGAGAGGAGGGCGTGGTGCTGCTCAAAACATAATTCCTAGCTCCACTGGTGCAGCCAAGGCTGTTGGGAAAGTCCTCCCTGAGCTAAATGGAAAGCTCACTGGTATGGCCTTCCGAGTTCCAACACCAAATGTGTCTGTTGTCGACTTGACCTGCCGGATTGAAAAAAGTGCATCCTATGACGATGTGAAAGCAGCCATCAAGGCAGCATCAGAGGGTGCACTGAAAGGTATTCTAGGTTACACAGATGAGGATGTGGTTTCCAATGACTTCGTTGGTGATGCAAGGTCAAGCATCTTTGATGCCAAGGCTGGTATTGGACTGAGCTCTTCCTTCATGAAGCTTGTGTCATGGTATGACAACGAGTGGGGCTACAGCAACCGTGTGTTGGATCTGATTGCCCACATGGCTCTTGTCAACGCCAAGCACTGATTTGTTGAAAATCCTCCTCCGATAGTATCTAGCTAGGAAAGGCTGCAATTTTGACGGTCTCTTTCTGTTGTCTTGGAATAAGATGTAAACTTGGAAACAAAGCAAAAAAAGAATGGACATTGATGTCCATGACATTGTTTGTAGCAGGCGGTGAAATTTACTCTGTATCGACCTGGGCAAGCGGAACTGTTGAGTGAACCATATGTCGGCAA CCTGATTGATTCATTGAGTCCAATGCTATGCCATTCTATATTTACTTTAAACATGCTTGTTTCATGCCAGAAATGTTCAACAGACAATTGGC]
[+] EMBL CB673878 [ CCCCCCCTCCTCTTCCTCCTCCGCCGCGAAACGAAAGGCGAGCTCTCTCTCTCTCTCTCTCCGCGGCGCGGTCAAAACCCTAGCGCGCGAGGAGGCCCCCCCCATGGCGCAGCAGCTCTCCGCCCCCTTCCGCGCCGCCGCGGCCGCCGGATCCC CGCCTCCGCCGCCGCCGCCGATCCCGCCAAGGTGTTACGCTTGAGAAGCGCTGGCTCAGCTCAGTTCACCTCCATCGCAGCTTCCTCTTCATTTGCTAGGAACATTGAGCCGCTGAGAGCGATAGCTACTCAGGCACCCCCTGCCGTCCCACAATATTCGAGTGGCGAGAAGACAAAGGTTGGCATCAATGGGTTTGGGCGAATTGGGAGGTTGGTCCTGCGTATTGCAACCAGTAGAGATGATATTGAAGTTGTTGCTGTCAATGATCCTTTCATTGATGCTAAATACATGGCCTACATGTTCAAGTATGACTCCACTCATGGTCCATTTAAAGGCTCCATTAAGGTTGTGGATGATTCAACCCTGGAGATCAATGGAAAGAAAGTCACAATCACTAGCAAAAGAGATCCAGCAGATATTCCTTGGGGTAACTTTGGAGCTGAGTATGTTGTTGAATCTTCAGGTGTTTTTACAACAACTGAAAAGGCATCGGCACATTTGAAGGGCGGTGCTAAGAAAGTTGTGATATCTGCTCCATCAGCAGATGCTCCAATGTTTGTCGTTGGAGTAAATGAGAAGAGCTATGATCCT ]
[-] EMBL AU093252 [ GCCTCCGCCGCCGCCGCCGATCCCGCCAAGGTGTTACGCTTGAGAAGCGCTGGCTCAGCTCAGTTCACCTCCATCGCAGCTTCCTCTTCATTTGCTAGGAACATTGAGCCGCTGAGAGCGATAG TACTCAGGCACCCCCTGCCGTCCCACAATATTCGAGTGGCGAGAAGACAAAGGTTGGCATCAATGGGTTTGGGCGAATTGGGAGGTTGGTCCTGCGTATTGCAACCAGTAGAGATGATATTGAAGTTGTTGCTGTCAATGATCCTTTCATTGATGCTAAATACATGGCCTACATGTTCAAGTATGACTCCACTCATGGTCCATTTAAAGGCTCCATTAAGGTTGTGGATGATTCAACCCTGGAGATCAATGGAAAGAAAGTCACAATCACTAGCAAAAGAGATCCAGCAGATATTCCTTGGGGTAACTTTGGAGCTGAGTATGTTGTTGAATCTTCAGGTGTTTTTACAACAACTGAAAAGGCATCGGCACATTTGAAGGGCGGTGCTAAGAAAGTTGTGATATCTGCTCCATCAGCAGATGCTCCAATGTTTGTCGTTGGAG ]
[-] EMBL CB673879 [ CCATGAGGAATTTGGCATTGTTGAGGGTCTCATGACAACTGTTCATGCCACAACAGCCACCCAGAAGACTGTCGATGGCCCTTCAATGAAAGATTGGAGAGGAGGGCGTGGTGCTGCTCAAAACATAATTCCTAGCTCCACTGGTGCAGCCAAGGCTGTTGGGAAAGTCCTCCCTGAGCTAAATGGAAAGCTCACTGGTATGGCCTTCCGAGTTCCAACACCAAATGTGTCTGTTGTCGACTTGACCTGCCGGATTGAAAAAAGTGCATCCTATGACGATGTGAAAGCAGCCATCAAGGCAGCATCAGAGGGTGCACTGAAAGGTATTCTAGGTTACACAGATGAGGATGTGGTTTCCAATGACTTCGTTGGTGATGCAAGGTCAAGCATCTTTGATGCCAAGGCTGGTATTGGACTGAGCTCTTCCTTCATGAAGCTTGTGTCATGGTATGACAACGAGTGGGGCTACAGCAACCGTGTGTTGGATCTGATTGCCCACATGGCTCTTGTCAACGCCAAGCACTGATTTGTTGAAAATCCTCCTCCGATAGTATCTAGCTAGGAAAGGCTGCAATTTTGACGGTCTCTTTCTGTTGTCTTGGAATAAGATGTAAACTTGGAAACAAAGCAAAAAAAGAATGGACATTGATGTCCATGACATTGTTTGTAGCAGGCGGTGAAATTTACTCTGTATCGACCTGGGCAAGCGGAACTGTTGAGTGAACCATATGTCGGCAACCCTGATTGAT ]
[+] EMBL AK059005 [ GAAAGATTGGAGAGGAGGGCGTGGTGCTGCTCAAAACATAATTCCTAGCTCCACTGGTGCAGCCAAGGCTGTTGGGAAAGTCCTCCCTGAGCTAAATGGAAAGCTCACTGGTATGGCCTTCCGAGTTCCAACACCAAATGTGTCTGTTGTCGACTTGACCTGCCGGATTGAAAAAAGTGCATCCTATGACGATGTGAAAGCAGCCATCAAGGCAGCATCAGAGGGTGCACTGAAAGGTATTCTAGGTTACACAGATGAGGATGTGGTTTCCAATGACTTCGTTGGTGATGCAAGGTCAAGCATCTTTGATGCCAAGGCTGGTATTGGACTGAGCTCTTCCTTCATGAAGCTTGTGTCATGGTATGACAACGAGTGGGGCTACAGCAACCGTGTGTTGGATCTGATTGCCCACATGGCTCTTGTCAACGCCAAGCACTGATTTGTTGAAAATCCTCCTCCGATAGTATCTAGCTAGGAAAGGCTGCAATTTTGACGGTCTCTTTCTGTTGTCTTGGAATAAGATGTAAACTTGGAAACAAAGCAAAAAAAGAATGGACATTGATGTCCATGACATTGTTTGTAGCAGGCGGTGAAATTTACTCTGTATCGACCTGGGCAAGCGGAACTGTTGAGTGAACCATATGTCGGCAA CCTGATTGATT ]
[-] EMBL C27246 [ GTA TCCAGG TACACAGATGAGGATGTGGTTTCCAATGAC TCGTTGGTGATGCAAGGTCAAACATCTTTGATGCCAAGGCTGGTATTGGACTGAGCTCTTCCTTCATGAAGCTTGTGTCATGGTATGACAACGAGTGGGGCTACAGCAACCGTGTGTTGGATCTGATTGCCCACATGGCTCTTGTCAACGCCAAGCACTGATTTGTTGAAAATCCTCCTCCGATAGTATCTAGCTAGGAAAGGCTGCAATTTTGACGGTCTCTTTCCGTTGTCTTGGAATAAGATGTAAACTTGGAAACAAAGCAAAAAAAGAATGGACATTGATGTCCATGACATTGTTTGTAGCAGGCGGTGAAATTTACTCTGTATCGACCTGGGCAAGCGGAACTGTTGAGTGAACCATATGTCGGCAA CCTGATTGATTCATTGAGTCCAATGCTATGC ]
[+] EMBL CF331693 [ AGCACTGATTTGTTGAAAATCCTCCTCCGATAGTATCTAGCTAGGAAAGGCTGCAATTTTGACGGTCTCTTTCTGTTGTCTTGGAATAAGATGTAAACTTGGAAACAAAGCAAAAAAAGAATGGACATTGATGTCCATGACATTGTTTGTAGCAGGCGGTGAAATTTACTCTGTATCGACCTGGGCAAGCGGAACTGTTGAGTGAA ]
consensusID : consensus_11118#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 273 fasta sequence
[CCGAATTCNGCCGANGACAACGANTGGGGCTACAGCAACCGTGTGTTGGATCTGATTGCCCACATGGCTCTTGTCAACGCCNAGCACTGATTTGTTGAAAATCCTCCTCCGATAGTATCTANCTAGGAAAGGCTGCAATTTTGACNGTCTCTTTCTGTTGTCTTGGAATAAGATATTAACTTGGAAACCAAGCCAAAAAAGAATGGACATTGATGTNCATGACATTGTTTGTTGCACGCGGTGAAATTTACTCTGTATCNACCTGGGCAAGCG]
[+] EMBL AA752990 [CCGAATTCNGCCGANGACAACGANTGGGGCTACAGCAACCGTGTGTTGGATCTGATTGCCCACATGGCTCTTGTCAACGCCNAGCACTGATTTGTTGAAAATCCTCCTCCGATAGTATCTANCTAGGAAAGGCTGCAATTTTGACNGTCTCTTTCTGTTGTCTTGGAATAAGATATTAACTTGGAAACCAAGCCAAAAAAGAATGGACATTGATGTNCATGACATTGTTTGTTGCACGCGGTGAAATTTACTCTGTATCNACCTGGGCAAGCG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_11118#0 CCTTCCCCTTCCCCCCCTCCGCCGCCTCCTCCGCCGCGAAACGAAAGGCGAGCTCTCTCT 60
consensus_11118#1 ------------------------------------------------------------
consensus_11118#0 CTCTCTCTCTCCGCGGCGCGGTCAAAACCCTAGCGCGCGAGGAGGCCCCCCCCATGGCGC 120
consensus_11118#1 ------------------------------------------------------------
consensus_11118#0 AGCAGCTCTCCGCCCCCTTCCGCGCCGCCGCGGCCGCCGGATCCCGCGCCTCCGCCGCCG 180
consensus_11118#1 ------------------------------------------------------------
consensus_11118#0 CCGCCGATCCCGCCAAGGTGTTACGCTTGAGAAGCGCTGGCTCAGCTCAGTTCACCTCCA 240
consensus_11118#1 ------------------------------------------------------------
consensus_11118#0 TCGCAGCTTCCTCTTCATTTGCTAGGAACATTGAGCCGCTGAGAGCGATAGCTACTCAGG 300
consensus_11118#1 ------------------------------------------------------------
consensus_11118#0 CACCCCCTGCCGTCCCACAATATTCGAGTGGCGAGAAGACAAAGGTTGGCATCAATGGGT 360
consensus_11118#1 ------------------------------------------------------------
consensus_11118#0 TTGGGCGAATTGGGAGGTTGGTCCTGCGTATTGCAACCAGTAGAGATGATATTGAAGTTG 420
consensus_11118#1 ------------------------------------------------------------
consensus_11118#0 TTGCTGTCAATGATCCTTTCATTGATGCTAAATACATGGCCTACATGTTCAAGTATGACT 480
consensus_11118#1 ------------------------------------------------------------
consensus_11118#0 CCACTCATGGTCCATTTAAAGGCTCCATTAAGGTTGTGGATGATTCAACCCTGGAGATCA 540
consensus_11118#1 ------------------------------------------------------------
consensus_11118#0 ATGGAAAGAAAGTCACAATCACTAGCAAAAGAGATCCAGCAGATATTCCTTGGGGTAACT 600
consensus_11118#1 ------------------------------------------------------------
consensus_11118#0 TTGGAGCTGAGTATGTTGTTGAATCTTCAGGTGTTTTTACAACAACTGAAAAGGCATCGG 660
consensus_11118#1 ------------------------------------------------------------
consensus_11118#0 CACATTTGAAGGGCGGTGCTAAGAAAGTTGTGATATCTGCTCCATCAGCAGATGCTCCAA 720
consensus_11118#1 ------------------------------------------------------------
consensus_11118#0 TGTTTGTCGTTGGAGTAAATGAGAAGAGCTATGATCCTAAAATGAATGTTGTTTCTAACG 780
consensus_11118#1 ------------------------------------------------------------
consensus_11118#0 CAAGTTGTACTACCAACTGTCTTGCTCCTCTTGCCAAGGTTGTCCATGAGGAATTTGGCA 840
consensus_11118#1 ------------------------------------------------------------
consensus_11118#0 TTGTTGAGGGTCTCATGACAACTGTTCATGCCACAACAGCCACCCAGAAGACTGTCGATG 900
consensus_11118#1 ------------------------------------------------------------
consensus_11118#0 GCCCTTCAATGAAAGATTGGAGAGGAGGGCGTGGTGCTGCTCAAAACATAATTCCTAGCT 960
consensus_11118#1 ------------------------------------------------------------
consensus_11118#0 CCACTGGTGCAGCCAAGGCTGTTGGGAAAGTCCTCCCTGAGCTAAATGGAAAGCTCACTG 1020
consensus_11118#1 ------------------------------------------------------------
consensus_11118#0 GTATGGCCTTCCGAGTTCCAACACCAAATGTGTCTGTTGTCGACTTGACCTGCCGGATTG 1080
consensus_11118#1 ------------------------------------------------------------
consensus_11118#0 AAAAAAGTGCATCCTATGACGATGTGAAAGCAGCCATCAAGGCAGCATCAGAGGGTGCAC 1140
consensus_11118#1 ------------------------------------------------------------
consensus_11118#0 TGAAAGGTATTCTAGGTTACACAGATGAGGATGTGGTTTCCAATGACTTCGTTGGTGATG 1200
consensus_11118#1 ------------------------------------------------------------
consensus_11118#0 CAAGGTCAAGCATCTTTGATGCCAAGGCTGGTATTGGACTGAGCTCTTCCTTCATGAAGC 1260
consensus_11118#1 -----------------------------------------------------------C 1
*
consensus_11118#0 TTGTGTCATGGTATGACAACGAGTGGGGCTACAGCAACCGTGTGTTGGATCTGATTGCCC 1320
consensus_11118#1 CGAATTCNGCCGANGACAACGANTGGGGCTACAGCAACCGTGTGTTGGATCTGATTGCCC 61
** * ******** *************************************
consensus_11118#0 ACATGGCTCTTGTCAACGCCAAGCACTGATTTGTTGAAAATCCTCCTCCGATAGTATCTA 1380
consensus_11118#1 ACATGGCTCTTGTCAACGCCNAGCACTGATTTGTTGAAAATCCTCCTCCGATAGTATCTA 121
******************** ***************************************
consensus_11118#0 GCTAGGAAAGGCTGCAATTTTGACGGTCTCTTTCTGTTGTCTTGGAATAAGATGTAAACT 1440
consensus_11118#1 NCTAGGAAAGGCTGCAATTTTGACNGTCTCTTTCTGTTGTCTTGGAATAAGATATTAACT 181
*********************** **************************** * ****
consensus_11118#0 TGGAAACAAAGCAAAAAAAGAATGGACATTGATGTCCATGACATTGTTTGTAGCAGGCGG 1500
consensus_11118#1 TGGAAACCAAGCCAAAAAAGAATGGACATTGATGTNCATGACATTGTTTGTTGCACGCGG 241
******* **** ********************** *************** *** ****
consensus_11118#0 TGAAATTTACTCTGTATCGACCTGGGCAAGCGGAACTGTTGAGTGAACCATATGTCGGCA 1560
consensus_11118#1 TGAAATTTACTCTGTATCNACCTGGGCAAGCG---------------------------- 273
****************** *************
consensus_11118#0 ACCTGATTGATTCATTGAGTCCAATGCTATGCCATTCTATATTTACTTTAAACATGCTTG 1620
consensus_11118#1 ------------------------------------------------------------
consensus_11118#0 TTTCATGCCAGAAATGTTCAACAGACAATTGGC 1653
consensus_11118#1 ---------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||