These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11120#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1327 fasta sequence [ACGCCCTCATCTCGCTCGCGCCGAGCCGCATCCCCGTTTCGCAGCGATCGCGACGACCGAGGCCGCCCGGGAGGTCGCGGCGGCGGCGGCGGCGGTGGCAGGGAGGTGCCCGATGGGCGACGAGAAGTCTCCGCTGAGCCAGATGGGCAGCCGCGACCGGGACCGGGAGCTCCTCATCCNNGTCTCCGGCGGCGGCTCGGCCCCCGGAGACGGCGACGGGGACGGCGACAGGGCGGCCTCCTCCTCCGCGTCCGCCGCTCTGTCCTCCTCCAGCCGCGAGGCTTTTCATAAGGTGGTCCGAAGTTGGGCTTCAAAGAAATTCATGACTGGATGTGTAATTCTCTTCCCCATAGCAATAACATTCTACATCACATGGTGGTTCATTCATTTTGTTGACGGATTCTTCTCGCCAATCTATGCTCAACTGGGAATCAACATGTTTGGTCTTGGCTTTATCACTTCTGTTACCTTCATATTTGTGGTTGGAGTCTTCATGTCATCTTGGGTTGGAGCATCTGTCCTTAGCCTTGGTGAGTGGATTATTAAGCGCATGCCACTTGTCCGTCATATCTACAATGCATCCAAGCAAATAAGTGCTGCAATATCACCAGATCAGAACAAACAGGCATTCAAGGAAGTGGTCATCATAAGGCATCCTCGTATTGGAGAATATGCATTTGGTTTCATTACATCATCAGTCTCTCTCCAGAGTTATACTGGTCAAGAGGAACTGTACTGCGTGTATGTCCCAACCAACCATCTTTATATTGGTGATATCTTCATGGTAAATTCGAAGGATGTTATAAGGCCAAATCTTTCTGTCCGTGAAGGCATCGAAATTGTTGTATCTGGTGGCATGTCGATGCCCCAAATTCTATCAACTCTGGACCCACAGACAATTCTTGGAGACAGAACAGGAGCAAGCAGAAGCTGAGATCTCTCCTTGGTTGCAACTTGACTAAAATTATCAGACCAAGTACAGTGAACTAGATCCTGAGCAACACGATGTATTAGTGGTCTGTCGAGCTCTAGGATCACAAGGATCTGTAAATTAGTAGAAGTAGGTGACTCATATATTCCTTGTTCATCCGTTGGCAGTTTGTACCATGGTTTGCACTTTCTACCACGTTCTATACAAGAATGCTTCGTAGTTGTAACGCCTTCTTTACTTCTTACTGTTTTGAGC-GTTGACAGCACTTGCCTTTAACCATGTTGAAGGTCATCCTGGTGAACTCTTGAAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AK059220 [ACGCCCTCATCTCGCTCGCGCCGAGCCGCATCCCCGTTTCGCAGCGATCGCGACGACCGAGGCCGCCCGGGAGGTCGCGGCGGCGGCGGCGGCGGTGGCAGGGAGGTGCCCGATGGGCGACGAGAAGTCTCCGCTGAGCCAGATGGGCAGCCGCGACCGGGACCGGGAGCTCCTCATCCCCGTCTCCGGCGGCGGCTCGGCCCCCGGAGACGGCGACGGGGACGGCGACAGGGCGGCCTCCTCCTCCGCGTCCGCCGCTCTGTCCTCCTCCAGCCGCGAGGCTTTTCATAAGGTGGTCCGAAGTTGGGCTTCAAAGAAATTCATGACTGGATGTGTAATTCTCTTCCCCATAGCAATAACATTCTACATCACATGGTGGTTCATTCATTTTGTTGACGGATTCTTCTCGCCAATCTATGCTCAACTGGGAATCAACATGTTTGGTCTTGGCTTTATCACTTCTGTTACCTTCATATTTGTGGTTGGAGTCTTCATGTCATCTTGGGTTGGAGCATCTGTCCTTAGCCTTGGTGAGTGGATTATTAAGCGCATGCCACTTGTCCGTCATATCTACAATGCATCCAAGCAAATAAGTGCTGCAATATCACCAGATCAGAACAAACAGGCATTCAAGGAAGTGGTCATCATAAGGCATCCTCGTATTGGAGAATATGCATTTGGTTTCATTACATCATCAGTCTCTCTCCAGAGTTATACTGGTCAAGAGGAACTGTACTGCGTGTATGTCCCAACCAACCATCTTTATATTGGTGATATCTTCATGGTAAATTCGAAGGATGTTATAAGGCCAAATCTTTCTGTCCGTGAAGGCATCGAAATTGTTGTATCTGGTGGCATGTCGATGCCCCAAATTCTATCAACTCTGGACCCACAGACAATTCTTGGAGACAGAACAGGAGCAAGCAGAAGCTGAGATCTCTCCTTGGTTGCAACTTGACTAAAATTATCAGACCAAGTACAGTGAACTAGATCCTGAGCAACACGATGTATTAGTGGTCTGTCGAGCTCTAGGATCACAAGGATCTGTAAATTAGTAGAAGTAGGTGACTCATATATTCCTTGTTCATCCGTTGGCAGTTTGTACCATGGTTTGCACTTTCTACCACGTTCTATACAAGAATGCTTCGTAG ] [+] EMBL AU164157 [ CTCATCTCGCTCGCGCCGAGCCGCATCCCCGTTTCGCAGCGATCGCGACGACCGAGGCCGCCCGGGAGGTCGCGGCGGCGGCGGCGGCGGTGGCAGGGAGGTGCCCGATGGGCGACGAGAAGTCTCCGCTGAGCCAGATGGGCAGCCGCGACCGGGACCGGGAGCTCCTCATCCNNGTCTCCGGCGGCGGCTCGGCCCCCGGAGACGGCGACGGGGACGGCGACAGGGCGGCCTNCTCCTCCGCGTCCGCC ] [+] EMBL AU069304 [ CGCCGAGTCGCATCCCCGTTTCGCAGCGATCGCNACGACCGAGGCCGCCCGGGAGGTCGCGGCGGCGGCGGCGGCGGTGGCAGGGAGGTGCCCGATGGGCGACGAGAAGTCTCCGCTGAGCCAGATGGGCAGCCGCGACCGGGACCGGGAGCTCCTCAT CNNGTNTCCGGCGGCGGNTCGGCCCCCGGAG ] [+] EMBL AU166943 [ GGCATCGAAATTGTTGTATCTGGTGGCATGTCGATGCCCCAAATTCTATCAACTCTGGACCCCCAGACAATTCTTGGAGACAGAACAGGAGCAAGCAGAAGCTGAGATCTCTCCTTGGTTGCAACTTGACTAAAATTATCAGACCAAGTACAGTGAACTAGATCCTGAGCAACNCGATGTATTAGTGGTCTGTCGAGCTCTAGGATCACAAGGATCTGTAAATTAGTAGAAGTAGGTGACTCATATATTCCTTGTTCATCCGTTGGCAGTTTGTACCATGGTTTGCACTTTNTACCACGTTNTATACAANAATGCTTCGTAGTTGTAACGCCTTCTTTACTTCTTACTGTTTTGAGCGGTTGACAGCACTTGCCTTTAACCATGTTGAAGGTCATCC ] [+] EMBL CF331744 [ TCTATACAAGAATGCTTCGTAGTTGTAACGCCTTCTTTACTTCTTACTGTTTTGAGC GTTGACAGCACTTGCCTTTAACCATGTTGAAGGTCATCCTGGTGAACTCTTGAAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL CF331649 [ TCTATACAAGAATGCTTCGTAGTTGTAACGCCTTCTTTACTTCTTACTGTTTTGAGC GTTGACAGCACTTGCCTTTAACCATGTTGAAGGTCATCCTGGTGAACTCTTGAAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA ] consensusID : consensus_11120#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 277 fasta sequence [GAACAGGAGCAAGCAGAAGCTGAGATNTCTCCTTGGTTGCAACTTGACTAAAATTATCAGACCAAGTACAGTGAACTAGATCCTGAGCAACCCNATGTATTAGTGGTCTGTCGAGCTNTAGGATCNCAAGGATNTGTAAATTAGTANAAGTAGGTGACTCATATATTCCTTGTTCATCCGGTTGGCAGTTTGTACCATGGTTTGCNCTTTNTACCNCGGTTNTANACAANAATGCTTNGTAGTTGTAACGCCAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AU172749 [GAACAGGAGCAAGCAGAAGCTGAGATNTCTCCTTGGTTGCAACTTGACTAAAATTATCAGACCAAGTACAGTGAACTAGATCCTGAGCAACCCNATGTATTAGTGGTCTGTCGAGCTNTAGGATCNCAAGGATNTGTAAATTAGTANAAGTAGGTGACTCATATATTCCTTGTTCATCCGGTTGGCAGTTTGTACCATGGTTTGCNCTTTNTACCNCGGTTNTANACAANAATGCTTNGTAGTTGTAACGCCAAAAAAAAAAAAAAAAAAAAAAAAA] consensusID : consensus_11120#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 254 fasta sequence [CATGGACTGAGGGAGTAGAAATATTCCTTGTTCATCCGTTGGCAGTTTGTACCATGGTTTGCACTTTCTACCACGTTCTATACAAGAATGCTTCGTAGTTGTAACGCCTTCTTTACTTCTTACTGTTTTGAGCGTTGACAGCACTTGCCTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCAAAAAAAAAAAAAAAAAA] [+] EMBL CF310901 [CATGGACTGAGGGAGTAGAAATATTCCTTGTTCATCCGTTGGCAGTTTGTACCATGGTTTGCACTTTCTACCACGTTCTATACAAGAATGCTTCGTAGTTGTAACGCCTTCTTTACTTCTTACTGTTTTGAGCGTTGACAGCACTTGCCTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_11120#0 ACGCCCTCATCTCGCTCGCGCCGAGCCGCATCCCCGTTTCGCAGCGATCGCGACGACCGA 60 consensus_11120#2 ------------------------------------------------------------ consensus_11120#1 ------------------------------------------------------------ consensus_11120#0 GGCCGCCCGGGAGGTCGCGGCGGCGGCGGCGGCGGTGGCAGGGAGGTGCCCGATGGGCGA 120 consensus_11120#2 ------------------------------------------------------------ consensus_11120#1 ------------------------------------------------------------ consensus_11120#0 CGAGAAGTCTCCGCTGAGCCAGATGGGCAGCCGCGACCGGGACCGGGAGCTCCTCATCCN 180 consensus_11120#2 ------------------------------------------------------------ consensus_11120#1 ------------------------------------------------------------ consensus_11120#0 NGTCTCCGGCGGCGGCTCGGCCCCCGGAGACGGCGACGGGGACGGCGACAGGGCGGCCTC 240 consensus_11120#2 ------------------------------------------------------------ consensus_11120#1 ------------------------------------------------------------ consensus_11120#0 CTCCTCCGCGTCCGCCGCTCTGTCCTCCTCCAGCCGCGAGGCTTTTCATAAGGTGGTCCG 300 consensus_11120#2 ------------------------------------------------------------ consensus_11120#1 ------------------------------------------------------------ consensus_11120#0 AAGTTGGGCTTCAAAGAAATTCATGACTGGATGTGTAATTCTCTTCCCCATAGCAATAAC 360 consensus_11120#2 ------------------------------------------------------------ consensus_11120#1 ------------------------------------------------------------ consensus_11120#0 ATTCTACATCACATGGTGGTTCATTCATTTTGTTGACGGATTCTTCTCGCCAATCTATGC 420 consensus_11120#2 ------------------------------------------------------------ consensus_11120#1 ------------------------------------------------------------ consensus_11120#0 TCAACTGGGAATCAACATGTTTGGTCTTGGCTTTATCACTTCTGTTACCTTCATATTTGT 480 consensus_11120#2 ------------------------------------------------------------ consensus_11120#1 ------------------------------------------------------------ consensus_11120#0 GGTTGGAGTCTTCATGTCATCTTGGGTTGGAGCATCTGTCCTTAGCCTTGGTGAGTGGAT 540 consensus_11120#2 ------------------------------------------------------------ consensus_11120#1 ------------------------------------------------------------ consensus_11120#0 TATTAAGCGCATGCCACTTGTCCGTCATATCTACAATGCATCCAAGCAAATAAGTGCTGC 600 consensus_11120#2 ------------------------------------------------------------ consensus_11120#1 ------------------------------------------------------------ consensus_11120#0 AATATCACCAGATCAGAACAAACAGGCATTCAAGGAAGTGGTCATCATAAGGCATCCTCG 660 consensus_11120#2 ------------------------------------------------------------ consensus_11120#1 ------------------------------------------------------------ consensus_11120#0 TATTGGAGAATATGCATTTGGTTTCATTACATCATCAGTCTCTCTCCAGAGTTATACTGG 720 consensus_11120#2 ------------------------------------------------------------ consensus_11120#1 ------------------------------------------------------------ consensus_11120#0 TCAAGAGGAACTGTACTGCGTGTATGTCCCAACCAACCATCTTTATATTGGTGATATCTT 780 consensus_11120#2 ------------------------------------------------------------ consensus_11120#1 ------------------------------------------------------------ consensus_11120#0 CATGGTAAATTCGAAGGATGTTATAAGGCCAAATCTTTCTGTCCGTGAAGGCATCGAAAT 840 consensus_11120#2 ------------------------------------------------------------ consensus_11120#1 ------------------------------------------------------------ consensus_11120#0 TGTTGTATCTGGTGGCATGTCGATGCCCCAAATTCTATCAACTCTGGACCCACAGACAAT 900 consensus_11120#2 ------------------------------------------------------------ consensus_11120#1 ------------------------------------------------------------ consensus_11120#0 TCTTGGAGACAGAACAGGAGCAAGCAGAAGCTGAGATCTCTCCTTGGTTGCAACTTGACT 960 consensus_11120#2 ------------------------------------------------------------ consensus_11120#1 ------------------------------------------------------------ consensus_11120#0 AAAATTATCAGACCAAGTACAGTGAACTAGATCCTGAGCAACACGATGTATTAGTGGTCT 1020 consensus_11120#2 ------------------------------------------------------------ consensus_11120#1 ------------------------------------------------------------ consensus_11120#0 GTCGAGCTCTAGGATCACAAGGATCTGTAAATTAGTAGAAGTA-GGTGACTCATATAT-T 1078 consensus_11120#2 ---------------------------------CATGGACTGA-GGGAGTAGAAATAT-T 25 consensus_11120#1 ------------------------------GAACAGGAGCAAGCAGAAGCTGAGATNTCT 30 * * ** * * consensus_11120#0 CCTTGTTCATCCGTTGGCAGTTTGTACCATGGTTTGCACTTTCTACCACGTTCTATACAA 1138 consensus_11120#2 CCTTGTTCATCCGTTGGCAGTTTGTACCATGGTTTGCACTTTCTACCACGTTCTATACAA 85 consensus_11120#1 CCTTGGTTGCAACTTGACTAAAATTATCAGACCAAGTACAGTGAACTAGATCCTGAGCAA 90 ***** * *** * ** ** * ** * ** * * ** *** consensus_11120#0 GAATGCTTCGTAGTTGTAACGCCTTCTTTACT-TCTTACTGTTTTGAGCGTTGACAGCAC 1197 consensus_11120#2 GAATGCTTCGTAGTTGTAACGCCTTCTTTACT-TCTTACTGTTTTGAGCGTTGACAGCAC 144 consensus_11120#1 CCCNATGTATTAGTGGTCTGTCGAGCTNTAGGATCNCAAGGATNTGTAAATTAGTANAAG 150 * **** ** * ** ** ** * * * ** ** * * consensus_11120#0 TTGCCTTTAACCATGTTGAAGGTCATCCTGGTGAACTCTTGAAATAAAAAAAAAAAAAAA 1257 consensus_11120#2 TTGCCTTTAAAAAAAAAAAAA--------------------AAAAAAAAAAAAAAAAAAA 184 consensus_11120#1 TAGGTGACTCATATATTCCTTGTTCATCCGGTTGGCAGTTTGTACCATGGTTTGCNCTTT 210 * * * * * consensus_11120#0 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1317 consensus_11120#2 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCAAAAAAAA 244 consensus_11120#1 NTACCNCGGTTNTANACAANAATGCTTNGTAGTTGTAACGCCAAAAAAAAAAAAAAAAAA 270 * * * ** ** * ** ******** ******** consensus_11120#0 AAAAAAAAAA 1327 consensus_11120#2 AAAAAAAAAA 254 consensus_11120#1 AAAAAAA--- 277 ******* |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||