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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11120#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1327 fasta sequence
[ACGCCCTCATCTCGCTCGCGCCGAGCCGCATCCCCGTTTCGCAGCGATCGCGACGACCGAGGCCGCCCGGGAGGTCGCGGCGGCGGCGGCGGCGGTGGCAGGGAGGTGCCCGATGGGCGACGAGAAGTCTCCGCTGAGCCAGATGGGCAGCCGCGACCGGGACCGGGAGCTCCTCATCCNNGTCTCCGGCGGCGGCTCGGCCCCCGGAGACGGCGACGGGGACGGCGACAGGGCGGCCTCCTCCTCCGCGTCCGCCGCTCTGTCCTCCTCCAGCCGCGAGGCTTTTCATAAGGTGGTCCGAAGTTGGGCTTCAAAGAAATTCATGACTGGATGTGTAATTCTCTTCCCCATAGCAATAACATTCTACATCACATGGTGGTTCATTCATTTTGTTGACGGATTCTTCTCGCCAATCTATGCTCAACTGGGAATCAACATGTTTGGTCTTGGCTTTATCACTTCTGTTACCTTCATATTTGTGGTTGGAGTCTTCATGTCATCTTGGGTTGGAGCATCTGTCCTTAGCCTTGGTGAGTGGATTATTAAGCGCATGCCACTTGTCCGTCATATCTACAATGCATCCAAGCAAATAAGTGCTGCAATATCACCAGATCAGAACAAACAGGCATTCAAGGAAGTGGTCATCATAAGGCATCCTCGTATTGGAGAATATGCATTTGGTTTCATTACATCATCAGTCTCTCTCCAGAGTTATACTGGTCAAGAGGAACTGTACTGCGTGTATGTCCCAACCAACCATCTTTATATTGGTGATATCTTCATGGTAAATTCGAAGGATGTTATAAGGCCAAATCTTTCTGTCCGTGAAGGCATCGAAATTGTTGTATCTGGTGGCATGTCGATGCCCCAAATTCTATCAACTCTGGACCCACAGACAATTCTTGGAGACAGAACAGGAGCAAGCAGAAGCTGAGATCTCTCCTTGGTTGCAACTTGACTAAAATTATCAGACCAAGTACAGTGAACTAGATCCTGAGCAACACGATGTATTAGTGGTCTGTCGAGCTCTAGGATCACAAGGATCTGTAAATTAGTAGAAGTAGGTGACTCATATATTCCTTGTTCATCCGTTGGCAGTTTGTACCATGGTTTGCACTTTCTACCACGTTCTATACAAGAATGCTTCGTAGTTGTAACGCCTTCTTTACTTCTTACTGTTTTGAGC-GTTGACAGCACTTGCCTTTAACCATGTTGAAGGTCATCCTGGTGAACTCTTGAAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AK059220 [ACGCCCTCATCTCGCTCGCGCCGAGCCGCATCCCCGTTTCGCAGCGATCGCGACGACCGAGGCCGCCCGGGAGGTCGCGGCGGCGGCGGCGGCGGTGGCAGGGAGGTGCCCGATGGGCGACGAGAAGTCTCCGCTGAGCCAGATGGGCAGCCGCGACCGGGACCGGGAGCTCCTCATCCCCGTCTCCGGCGGCGGCTCGGCCCCCGGAGACGGCGACGGGGACGGCGACAGGGCGGCCTCCTCCTCCGCGTCCGCCGCTCTGTCCTCCTCCAGCCGCGAGGCTTTTCATAAGGTGGTCCGAAGTTGGGCTTCAAAGAAATTCATGACTGGATGTGTAATTCTCTTCCCCATAGCAATAACATTCTACATCACATGGTGGTTCATTCATTTTGTTGACGGATTCTTCTCGCCAATCTATGCTCAACTGGGAATCAACATGTTTGGTCTTGGCTTTATCACTTCTGTTACCTTCATATTTGTGGTTGGAGTCTTCATGTCATCTTGGGTTGGAGCATCTGTCCTTAGCCTTGGTGAGTGGATTATTAAGCGCATGCCACTTGTCCGTCATATCTACAATGCATCCAAGCAAATAAGTGCTGCAATATCACCAGATCAGAACAAACAGGCATTCAAGGAAGTGGTCATCATAAGGCATCCTCGTATTGGAGAATATGCATTTGGTTTCATTACATCATCAGTCTCTCTCCAGAGTTATACTGGTCAAGAGGAACTGTACTGCGTGTATGTCCCAACCAACCATCTTTATATTGGTGATATCTTCATGGTAAATTCGAAGGATGTTATAAGGCCAAATCTTTCTGTCCGTGAAGGCATCGAAATTGTTGTATCTGGTGGCATGTCGATGCCCCAAATTCTATCAACTCTGGACCCACAGACAATTCTTGGAGACAGAACAGGAGCAAGCAGAAGCTGAGATCTCTCCTTGGTTGCAACTTGACTAAAATTATCAGACCAAGTACAGTGAACTAGATCCTGAGCAACACGATGTATTAGTGGTCTGTCGAGCTCTAGGATCACAAGGATCTGTAAATTAGTAGAAGTAGGTGACTCATATATTCCTTGTTCATCCGTTGGCAGTTTGTACCATGGTTTGCACTTTCTACCACGTTCTATACAAGAATGCTTCGTAG ]
[+] EMBL AU164157 [ CTCATCTCGCTCGCGCCGAGCCGCATCCCCGTTTCGCAGCGATCGCGACGACCGAGGCCGCCCGGGAGGTCGCGGCGGCGGCGGCGGCGGTGGCAGGGAGGTGCCCGATGGGCGACGAGAAGTCTCCGCTGAGCCAGATGGGCAGCCGCGACCGGGACCGGGAGCTCCTCATCCNNGTCTCCGGCGGCGGCTCGGCCCCCGGAGACGGCGACGGGGACGGCGACAGGGCGGCCTNCTCCTCCGCGTCCGCC ]
[+] EMBL AU069304 [ CGCCGAGTCGCATCCCCGTTTCGCAGCGATCGCNACGACCGAGGCCGCCCGGGAGGTCGCGGCGGCGGCGGCGGCGGTGGCAGGGAGGTGCCCGATGGGCGACGAGAAGTCTCCGCTGAGCCAGATGGGCAGCCGCGACCGGGACCGGGAGCTCCTCAT CNNGTNTCCGGCGGCGGNTCGGCCCCCGGAG ]
[+] EMBL AU166943 [ GGCATCGAAATTGTTGTATCTGGTGGCATGTCGATGCCCCAAATTCTATCAACTCTGGACCCCCAGACAATTCTTGGAGACAGAACAGGAGCAAGCAGAAGCTGAGATCTCTCCTTGGTTGCAACTTGACTAAAATTATCAGACCAAGTACAGTGAACTAGATCCTGAGCAACNCGATGTATTAGTGGTCTGTCGAGCTCTAGGATCACAAGGATCTGTAAATTAGTAGAAGTAGGTGACTCATATATTCCTTGTTCATCCGTTGGCAGTTTGTACCATGGTTTGCACTTTNTACCACGTTNTATACAANAATGCTTCGTAGTTGTAACGCCTTCTTTACTTCTTACTGTTTTGAGCGGTTGACAGCACTTGCCTTTAACCATGTTGAAGGTCATCC ]
[+] EMBL CF331744 [ TCTATACAAGAATGCTTCGTAGTTGTAACGCCTTCTTTACTTCTTACTGTTTTGAGC GTTGACAGCACTTGCCTTTAACCATGTTGAAGGTCATCCTGGTGAACTCTTGAAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL CF331649 [ TCTATACAAGAATGCTTCGTAGTTGTAACGCCTTCTTTACTTCTTACTGTTTTGAGC GTTGACAGCACTTGCCTTTAACCATGTTGAAGGTCATCCTGGTGAACTCTTGAAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA ]
consensusID : consensus_11120#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 277 fasta sequence
[GAACAGGAGCAAGCAGAAGCTGAGATNTCTCCTTGGTTGCAACTTGACTAAAATTATCAGACCAAGTACAGTGAACTAGATCCTGAGCAACCCNATGTATTAGTGGTCTGTCGAGCTNTAGGATCNCAAGGATNTGTAAATTAGTANAAGTAGGTGACTCATATATTCCTTGTTCATCCGGTTGGCAGTTTGTACCATGGTTTGCNCTTTNTACCNCGGTTNTANACAANAATGCTTNGTAGTTGTAACGCCAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AU172749 [GAACAGGAGCAAGCAGAAGCTGAGATNTCTCCTTGGTTGCAACTTGACTAAAATTATCAGACCAAGTACAGTGAACTAGATCCTGAGCAACCCNATGTATTAGTGGTCTGTCGAGCTNTAGGATCNCAAGGATNTGTAAATTAGTANAAGTAGGTGACTCATATATTCCTTGTTCATCCGGTTGGCAGTTTGTACCATGGTTTGCNCTTTNTACCNCGGTTNTANACAANAATGCTTNGTAGTTGTAACGCCAAAAAAAAAAAAAAAAAAAAAAAAA]
consensusID : consensus_11120#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 254 fasta sequence
[CATGGACTGAGGGAGTAGAAATATTCCTTGTTCATCCGTTGGCAGTTTGTACCATGGTTTGCACTTTCTACCACGTTCTATACAAGAATGCTTCGTAGTTGTAACGCCTTCTTTACTTCTTACTGTTTTGAGCGTTGACAGCACTTGCCTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCAAAAAAAAAAAAAAAAAA]
[+] EMBL CF310901 [CATGGACTGAGGGAGTAGAAATATTCCTTGTTCATCCGTTGGCAGTTTGTACCATGGTTTGCACTTTCTACCACGTTCTATACAAGAATGCTTCGTAGTTGTAACGCCTTCTTTACTTCTTACTGTTTTGAGCGTTGACAGCACTTGCCTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCAAAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_11120#0 ACGCCCTCATCTCGCTCGCGCCGAGCCGCATCCCCGTTTCGCAGCGATCGCGACGACCGA 60
consensus_11120#2 ------------------------------------------------------------
consensus_11120#1 ------------------------------------------------------------
consensus_11120#0 GGCCGCCCGGGAGGTCGCGGCGGCGGCGGCGGCGGTGGCAGGGAGGTGCCCGATGGGCGA 120
consensus_11120#2 ------------------------------------------------------------
consensus_11120#1 ------------------------------------------------------------
consensus_11120#0 CGAGAAGTCTCCGCTGAGCCAGATGGGCAGCCGCGACCGGGACCGGGAGCTCCTCATCCN 180
consensus_11120#2 ------------------------------------------------------------
consensus_11120#1 ------------------------------------------------------------
consensus_11120#0 NGTCTCCGGCGGCGGCTCGGCCCCCGGAGACGGCGACGGGGACGGCGACAGGGCGGCCTC 240
consensus_11120#2 ------------------------------------------------------------
consensus_11120#1 ------------------------------------------------------------
consensus_11120#0 CTCCTCCGCGTCCGCCGCTCTGTCCTCCTCCAGCCGCGAGGCTTTTCATAAGGTGGTCCG 300
consensus_11120#2 ------------------------------------------------------------
consensus_11120#1 ------------------------------------------------------------
consensus_11120#0 AAGTTGGGCTTCAAAGAAATTCATGACTGGATGTGTAATTCTCTTCCCCATAGCAATAAC 360
consensus_11120#2 ------------------------------------------------------------
consensus_11120#1 ------------------------------------------------------------
consensus_11120#0 ATTCTACATCACATGGTGGTTCATTCATTTTGTTGACGGATTCTTCTCGCCAATCTATGC 420
consensus_11120#2 ------------------------------------------------------------
consensus_11120#1 ------------------------------------------------------------
consensus_11120#0 TCAACTGGGAATCAACATGTTTGGTCTTGGCTTTATCACTTCTGTTACCTTCATATTTGT 480
consensus_11120#2 ------------------------------------------------------------
consensus_11120#1 ------------------------------------------------------------
consensus_11120#0 GGTTGGAGTCTTCATGTCATCTTGGGTTGGAGCATCTGTCCTTAGCCTTGGTGAGTGGAT 540
consensus_11120#2 ------------------------------------------------------------
consensus_11120#1 ------------------------------------------------------------
consensus_11120#0 TATTAAGCGCATGCCACTTGTCCGTCATATCTACAATGCATCCAAGCAAATAAGTGCTGC 600
consensus_11120#2 ------------------------------------------------------------
consensus_11120#1 ------------------------------------------------------------
consensus_11120#0 AATATCACCAGATCAGAACAAACAGGCATTCAAGGAAGTGGTCATCATAAGGCATCCTCG 660
consensus_11120#2 ------------------------------------------------------------
consensus_11120#1 ------------------------------------------------------------
consensus_11120#0 TATTGGAGAATATGCATTTGGTTTCATTACATCATCAGTCTCTCTCCAGAGTTATACTGG 720
consensus_11120#2 ------------------------------------------------------------
consensus_11120#1 ------------------------------------------------------------
consensus_11120#0 TCAAGAGGAACTGTACTGCGTGTATGTCCCAACCAACCATCTTTATATTGGTGATATCTT 780
consensus_11120#2 ------------------------------------------------------------
consensus_11120#1 ------------------------------------------------------------
consensus_11120#0 CATGGTAAATTCGAAGGATGTTATAAGGCCAAATCTTTCTGTCCGTGAAGGCATCGAAAT 840
consensus_11120#2 ------------------------------------------------------------
consensus_11120#1 ------------------------------------------------------------
consensus_11120#0 TGTTGTATCTGGTGGCATGTCGATGCCCCAAATTCTATCAACTCTGGACCCACAGACAAT 900
consensus_11120#2 ------------------------------------------------------------
consensus_11120#1 ------------------------------------------------------------
consensus_11120#0 TCTTGGAGACAGAACAGGAGCAAGCAGAAGCTGAGATCTCTCCTTGGTTGCAACTTGACT 960
consensus_11120#2 ------------------------------------------------------------
consensus_11120#1 ------------------------------------------------------------
consensus_11120#0 AAAATTATCAGACCAAGTACAGTGAACTAGATCCTGAGCAACACGATGTATTAGTGGTCT 1020
consensus_11120#2 ------------------------------------------------------------
consensus_11120#1 ------------------------------------------------------------
consensus_11120#0 GTCGAGCTCTAGGATCACAAGGATCTGTAAATTAGTAGAAGTA-GGTGACTCATATAT-T 1078
consensus_11120#2 ---------------------------------CATGGACTGA-GGGAGTAGAAATAT-T 25
consensus_11120#1 ------------------------------GAACAGGAGCAAGCAGAAGCTGAGATNTCT 30
* * ** * *
consensus_11120#0 CCTTGTTCATCCGTTGGCAGTTTGTACCATGGTTTGCACTTTCTACCACGTTCTATACAA 1138
consensus_11120#2 CCTTGTTCATCCGTTGGCAGTTTGTACCATGGTTTGCACTTTCTACCACGTTCTATACAA 85
consensus_11120#1 CCTTGGTTGCAACTTGACTAAAATTATCAGACCAAGTACAGTGAACTAGATCCTGAGCAA 90
***** * *** * ** ** * ** * ** * * ** ***
consensus_11120#0 GAATGCTTCGTAGTTGTAACGCCTTCTTTACT-TCTTACTGTTTTGAGCGTTGACAGCAC 1197
consensus_11120#2 GAATGCTTCGTAGTTGTAACGCCTTCTTTACT-TCTTACTGTTTTGAGCGTTGACAGCAC 144
consensus_11120#1 CCCNATGTATTAGTGGTCTGTCGAGCTNTAGGATCNCAAGGATNTGTAAATTAGTANAAG 150
* **** ** * ** ** ** * * * ** ** * *
consensus_11120#0 TTGCCTTTAACCATGTTGAAGGTCATCCTGGTGAACTCTTGAAATAAAAAAAAAAAAAAA 1257
consensus_11120#2 TTGCCTTTAAAAAAAAAAAAA--------------------AAAAAAAAAAAAAAAAAAA 184
consensus_11120#1 TAGGTGACTCATATATTCCTTGTTCATCCGGTTGGCAGTTTGTACCATGGTTTGCNCTTT 210
* * * * *
consensus_11120#0 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1317
consensus_11120#2 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCAAAAAAAA 244
consensus_11120#1 NTACCNCGGTTNTANACAANAATGCTTNGTAGTTGTAACGCCAAAAAAAAAAAAAAAAAA 270
* * * ** ** * ** ******** ********
consensus_11120#0 AAAAAAAAAA 1327
consensus_11120#2 AAAAAAAAAA 254
consensus_11120#1 AAAAAAA--- 277
*******
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||