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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11123#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1129 fasta sequence
[CCTTCTCCCTTCCGCCTCCTTCCATCCCCTCCCCTCCCCTCCCACGCGACGGCGGCGGCGG-CGGCGGCCGGAGCGCGCGCCTCCTTCCCACCACCGGGCTCCATCTCGCCTCGAATCGAAGGGTAGTAGTAGTAGTAGAGGATACACGATGCAGTCTCTGCTGCGGCGCGTCTATCTTGCCGGAAGCCATGGCTCCGCGGCGAAGCTCTTGGACCGTGCAGCTTCTGGAGTCGCGCAGTCGGGTGCTAACCTGCTG-TCCATCAAGCACCT-GAGT-TCTTGCAGCTGGATTCGTCCATTTG-GGAACTCAATCGTC-TCCGGTGATAGTGTTCATTCCCATGGGTTCTGCGTGAATACCATGCCAATGAGGGGTCTATCAACAGTGGGGAGTGCTGAGGTTTCTGTCGAGGAGGAAAGTTCTGACTCTCCAGGAGTCGAGCATCCTCCGCGCATCAAGTTTAAGAGGCCTGACAAGACGGCCAGGCACATTATGAATATCTTGAACAAGGAGGCTGTTGACAAGGTCCGTGGGGAAAGAGAGATTCCTGATGTGCAGCCTGGATGTATTATCCAAATGAGATTGCAAGTTCCTGAGAACAAGCGTCGTGAGTCTACGTTGAAAGGCATTGTCATAGGAAGACGTAATGCTGGGATCAATACAACTTTCAGACTGCGTAGATTAGTAGCTGGTGTTGGAGTCGAGTCTGTCTTTCCACTTTACTCTCCAAACATCAAGGAAATCAAGGTCTTGGACAGGAAGAAAGTCAGGAGAGCAAAGTTGTATTACCTGCGGGACAGGATGAATGCACTTAAGAAATGAGACTGCTTTAGCTCCCCTTTTATTTTTTTTTAGTTGATCTGCAAGGTTTCTTGTGACATAAAGCTTTCAGTTCAGGATGCACATTTTGTTAGTTCCATCTCCTAAAAGCTACTGTTTGTATTTCTGATACTTGGTTCTTTCAAGTACACAAGCAGTGCAGGCAGCAATCTGCTCCCGTGGTTCTGAATTGACAGCGTTGATATCTTATATTTTATGTTGTAACCTCTTTCTGATGATAGAAATGACCACATATCAAGCTCCCCGCATTAAAGACTTGTTTGTGTTTAAGATAAAAATAGTTTGAAGCTTAGT]
[+] EMBL CF331319 [CCTTCTCCCTTCCGCCTCCTTCCATCCCCTCCCCTCCCCTCCCACGCGACGGCGGCGGCGGNCGGCGGCCGGAGCGCGCGCCTCCTTCCCACCACCGGGCTCCATCTCGCCTCGAATCGAAGGGTAGTAGTAGTAGTAGAGGATACACGATGCAGTCTCTGCTGCGGCGCGTCTATCTTGCCGGAAGCCATGGCTCCGCGGCGAAGCTCTTGGACCGTGCAGCTTCTGGAGTCGCGCAGTCGGGTGCTAACCTGCTG TCCATCAAGCACCT GAGT TCTTGCAGCTGGATTCGTCCATTTG GGAACTC ]
[+] EMBL CF305201 [ CTTCCATCCCCTCCCCTCCCCTCCCACGCGACGGCGGCGGCGG CGGCGGCCGGAGCGCGCGCCTCCTTCCCACCACCGGGCTCCATCTCGCCTCGAATCGAAGGGTAGTAGTAGTAGTAGAGGATACACGATGCAGTCTCTGCTGCGGCGCGTCTATCTTGCCGGAAGCCATGGCTCCGCGGCGAAGCTCTTGGACCGTGCAGCTTCTGGAGTCGCGCAGTCGGGTGCTAACCTGCTG TCCATCAAGCACCT GAGT TCTTGCAGCTGGATTCGTCCATTTG GGAACTCAATCGTC TCCGGTGATAGTGTTCATTCCCATGGGTTCTGCGTGAATACCATGCCAATGAGGGGTCTATCAACAGTGGGGAGTGCTGAGGTTTCTGTCGAGGAGGAAAGTTCTGACTCTCCAGGAGTCGAGCATCCTCCGCGCATCAAGTTTAAGAGGCCTGACAAGACGGCCAGGCACATTATGAATATCTTGAACAAGGAGGCTGTTGACAAGGTCCGTGGGGAAAGAGAGATTCC ]
[+] EMBL AK073514 [ TTCCATCCCCTCCCCTCCCCTCCCACGCGACGGCGGCGGCGG CGGCGGCCGGAGCGCGCGCCTCCTTCCCACCACCGGGCTCCATCTCGCCTCGAATCGAAGGGTAGTAGTAGTAGTAGAGGATACACGATGCAGTCTCTGCTGCGGCGCGTCTATCTTGCCGGAAGCCATGGCTCCGCGGCGAAGCTCTTGGACCGTGCAGCTTCTGGAGTCGCGCAGTCGGGTGCTAACCTGCTG TCCATCAAGCACCT GAGT TCTTGCAGCTGGATTCGTCCATTTG GGAACTCAATCGTC TCCGGTGATAGTGTTCATTCCCATGGGTTCTGCGTGAATACCATGCCAATGAGGGGTCTATCAACAGTGGGGAGTGCTGAGGTTTCTGTCGAGGAGGAAAGTTCTGACTCTCCAGGAGTCGAGCATCCTCCGCGCATCAAGTTTAAGAGGCCTGACAAGACGGCCAGGCACATTATGAATATCTTGAACAAGGAGGCTGTTGACAAGGTCCGTGGGGAAAGAGAGATTCCTGATGTGCAGCCTGGATGTATTATCCAAATGAGATTGCAAGTTCCTGAGAACAAGCGTCGTGAGTCTACGTTGAAAGGCATTGTCATAGGAAGACGTAATGCTGGGATCAATACAACTTTCAGACTGCGTAGATTAGTAGCTGGTGTTGGAGTCGAGTCTGTCTTTCCACTTTACTCTCCAAACATCAAGGAAATCAAGGTCTTGGACAGGAAGAAAGTCAGGAGAGCAAAGTTGTATTACCTGCGGGACAGGATGAATGCACTTAAGAAATGAGACTGCTTTAGCTCCCCTTTTATTTTTTTTTAGTTGATCTGCAAGGTTTCTTGTGACATAAAGCTTTCAGTTCAGGATGCACATTTTGTTAGTTCCATCTCCTAAAAGCTACTGTTTGTATTTCTGATACTTGGTTCTTTCAAGTACACAAGCAGTGCAGGCAGCAATCTGCTCCCGTGGTTCTGAATTGACAGCGTTGATATCTTATATTTTATGTTGTAACCTCTTTCTGATGATAGAAATGACCACATATCAAGCTCCCCGCATTAAAGACTTGTTTGTGTTTAAGATAAAAATAGTTTGAAGCTTAGT]
[+] EMBL AK060003 [ TCCCCTCCCCTCCCCTCCCACGCGACGGCGGCGGCGG CGGCGGCCGGAGCGCGCGCCTCCTTCCCACCACCGGGCTCCATCTCGCCTCGAATCGAAGGGTAGTAGTAGTAGTAGAGGATACACGATGCAGTCTCTGCTGCGGCGCGTCTATCTTGCCGGAAGCCATGGCTCCGCGGCGAAGCTCTTGGACCGTGCAGCTTCTGGAGTCGCGCAGTCGGGTGCTAACCTGCTG TCCATCAAGCACCT GAGT TCTTGCAGCTGGATTCGTCCATTTG GGAACTCAATCGTC TCCGGTGATAGTGTTCATTCCCATGGGTTCTGCGTGAATACCATGCCAATGAGGGGTCTATCAACAGTGGGGAGTGCTGAGGTTTCTGTCGAGGAGGAAAGTTCTGACTCTCCAGGAGTCGAGCATCCTCCGCGCATCAAGTTTAAGAGGCCTGACAAGACGGCCAGGCACATTATGAATATCTTGAACAAGGAGGCTGTTGACAAGGTCCGTGGGGAAAGAGAGATTCCTGATGTGCAGCCTGGATGTATTATCCAAATGAGATTGCAAGTTCCTGAGAACAAGCGTCGTGAGTCTACGTTGAAAGGCATTGTCATAGGAAGACGTAATGCTGGGATCAATACAACTTTCAGACTGCGTAGATTAGTAGCTGGTGTTGGAGTCGAGTCTGTCTTTCCACTTTACTCTCCAAACATCAAGGAAATCAAGGTCTTGGACAGGAAGAAAGTCAGGAGAGCAAAGTTGTATTACCTGCGGGACAGGATGAATGCACTTAAGAAATGAGACTGCTTTAGCTCCCCTTTTA TTTTTTTTAGTTGATCTGCAAGGTTTCTTGTGACATAAAGCTTTCAGTTCAGGATGCACATTTTGTTAGTTCCATCTCCTAAAAGCTACTGTTTGTATTTCTGATACTTGGTTCTTTCAAGTACACAAGCAGTGCAGGCAGCAATCTGCTCC ]
[+] EMBL CA758415 [ CACGCGACGGCGGCGGCGG CGGCGGCCGGAGCGCGCGCCTCCTTCCCACCACCGGGCTCCATCTCGCCTCGAATCGAAGGGTAGTAGTAGTAGTAGAGGATACACGATGCAGTCTCTGCTGCGGCGCGTCTATCTTGCCGGAAGCCATGGCTCCGCGGCGAAGCTCTTGGACCGTGCAGCTTCTGGAGTCGCGCAGTCGGGTGCTAACCTGCTG TCCATCAAGCACCT GAGT TCTTGCAGCTGGATTCGTCCATTTG GGAACTCAATCGTC TCCGGTGATAGTGTTCATTCCCATGGGTTCTGCGTGAATACCATGCCAATGAGGGGTCTATCAACAGTGGGGAGTGCTGAGGTTTCTGTCGAGGAGGAAAGTTCTGACTCTCCTGGAGTCGAGCATCCTCCGCGCATCAAGTTTAAGAGGCCTGACAAGACGGCCAGGCACATTATGAATATCTTGAACAAGGAGGCTGTTGACAAGGTCCGTGGGGAAAGAGAGATTCCTGATGTGCAGCCTGGATGTATTATCCAAATGAGATTGCAAGTTCCTGAGAACAAGCGTCGTGAGTCTACGTTGAAAGGCATTGTCATAGGAAGACGTAATGCTGGGATCAATACCACTTTC ]
[+] EMBL OS0149A [ GTCTCTGCTGCGGCGCGTCTATCTTNCCGGAAGCCATGGCTCCGCGGCGAAG TCTTGGACCGTGCAGCTTCTGGAGTCGCGCAGTCGGGTGCTAACCTGCTGATCCATCAAGCACCTCGAGTATCTTGCAGCTGGATTCGTCCATTTGAGGAACTCAATCGTCATCCGGTGATAGTGTTCATTCCCATGGGTTCTGCGTGAATACCATGCCAATGAGGGGTCTATCAACAGTGGGGAGTGCTGAGGTCTCTGTCGAGGAGGAAAGTTCTGACTATCCAGGAGTCGAGCATCCACCGNGCATCAAGTTTAAGAG ]
[-] EMBL CF331320 [ GGGGTCTATCAACAGTGGGGAGTGCTGAGGTTTCTGTCGAGGAGGAAAGTTCTGACTCTCCAGGAGTCGAGCATCCTCCGCGCATCAAGTTTAAGAGGCCTGACAAGACGGCCAGGCACATTATGAATATCTTGAACAAGGAGGCTGTTGACAAGGTCCGTGGGGAAAGAGAGATTCCTGATGTGCAGCCTGGATGTATTATCCAAATGAGATTGCAAGTTCCTGAGAACAAGCGTCGTGAGTTTACGTTGAAAGGCATTGTCATAGGAAGACGTAATGCTGGGATCAATACAACTTTCAGACTGCGTAGATTAGTAGCTGGTGTTGGAGTCGAGTCTGTCTTTCCACTTTACTCTCCAAACATCAAGGAAATCAAGGTTTAGGACAGGAAGAAAGTCAGGAGAGCAAAGTTGTATTACCTGCGGGACAGGATGAATGCACTTAAGAAATGAGACTGCTTTAGCTCCCCTTTTATTTTTTTTTAGTTGATCTGCAAGGTTTCTTGTGACATAAAGCTTTCAGTTCAGGATGCACATTTTGTTAGTTCCATCTCCTAAAAGCTACTGTTTGTATTTCTGATACTTGGTTCTTTCAAGTACACAAGCAGTGCAGGCAGCAATCTGCTCCCGTGGTTTTGAAaaaaaa ]
consensusID : consensus_11123#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 266 fasta sequence
[GTCAGGAGAGGCAAAGTTGTATTACTGCGGGACAGGATGAATGCACTTAAGAAATGAGACTGCTTTAGCTCCCCTTTTATTTTTTTTTAGTTGATCTGCAAGGTTTCTTGTGACATAAAGCTTTCAGTTCAGGATGCACATTTTGTTAGTTCCATCTCCTAAAAGCTACTGTTTGTATTTCTGATACTTGGTTCTTTCAAGTACACAAGCAGTGCAGGCAGCAATCTGCTCCCGTGGTTCTGAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AU083421 [GTCAGGAGAGGCAAAGTTGTATTACTGCGGGACAGGATGAATGCACTTAAGAAATGAGACTGCTTTAGCTCCCCTTTTATTTTTTTTTAGTTGATCTGCAAGGTTTCTTGTGACATAAAGCTTTCAGTTCAGGATGCACATTTTGTTAGTTCCATCTCCTAAAAGCTACTGTTTGTATTTCTGATACTTGGTTCTTTCAAGTACACAAGCAGTGCAGGCAGCAATCTGCTCCCGTGGTTCTGAAAAAAAAAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_11123#0 CCTTCTCCCTTCCGCCTCCTTCCATCCCCTCCCCTCCCCTCCCACGCGACGGCGGCGGCG 60
consensus_11123#1 ------------------------------------------------------------
consensus_11123#0 GCGGCGGCCGGAGCGCGCGCCTCCTTCCCACCACCGGGCTCCATCTCGCCTCGAATCGAA 120
consensus_11123#1 ------------------------------------------------------------
consensus_11123#0 GGGTAGTAGTAGTAGTAGAGGATACACGATGCAGTCTCTGCTGCGGCGCGTCTATCTTGC 180
consensus_11123#1 ------------------------------------------------------------
consensus_11123#0 CGGAAGCCATGGCTCCGCGGCGAAGCTCTTGGACCGTGCAGCTTCTGGAGTCGCGCAGTC 240
consensus_11123#1 ------------------------------------------------------------
consensus_11123#0 GGGTGCTAACCTGCTGTCCATCAAGCACCTGAGTTCTTGCAGCTGGATTCGTCCATTTGG 300
consensus_11123#1 ------------------------------------------------------------
consensus_11123#0 GAACTCAATCGTCTCCGGTGATAGTGTTCATTCCCATGGGTTCTGCGTGAATACCATGCC 360
consensus_11123#1 ------------------------------------------------------------
consensus_11123#0 AATGAGGGGTCTATCAACAGTGGGGAGTGCTGAGGTTTCTGTCGAGGAGGAAAGTTCTGA 420
consensus_11123#1 ------------------------------------------------------------
consensus_11123#0 CTCTCCAGGAGTCGAGCATCCTCCGCGCATCAAGTTTAAGAGGCCTGACAAGACGGCCAG 480
consensus_11123#1 ------------------------------------------------------------
consensus_11123#0 GCACATTATGAATATCTTGAACAAGGAGGCTGTTGACAAGGTCCGTGGGGAAAGAGAGAT 540
consensus_11123#1 ------------------------------------------------------------
consensus_11123#0 TCCTGATGTGCAGCCTGGATGTATTATCCAAATGAGATTGCAAGTTCCTGAGAACAAGCG 600
consensus_11123#1 ------------------------------------------------------------
consensus_11123#0 TCGTGAGTCTACGTTGAAAGGCATTGTCATAGGAAGACGTAATGCTGGGATCAATACAAC 660
consensus_11123#1 ------------------------------------------------------------
consensus_11123#0 TTTCAGACTGCGTAGATTAGTAGCTGGTGTTGGAGTCGAGTCTGTCTTTCCACTTTACTC 720
consensus_11123#1 ------------------------------------------------------------
consensus_11123#0 TCCAAACATCAAGGAAATCAAGGTCTTGGACAGGAAGAAAGTCAGGAGAG-CAAAGTTGT 779
consensus_11123#1 ----------------------------------------GTCAGGAGAGGCAAAGTTGT 20
********** *********
consensus_11123#0 ATTACCTGCGGGACAGGATGAATGCACTTAAGAAATGAGACTGCTTTAGCTCCCCTTTTA 839
consensus_11123#1 ATTAC-TGCGGGACAGGATGAATGCACTTAAGAAATGAGACTGCTTTAGCTCCCCTTTTA 79
***** ******************************************************
consensus_11123#0 TTTTTTTTTAGTTGATCTGCAAGGTTTCTTGTGACATAAAGCTTTCAGTTCAGGATGCAC 899
consensus_11123#1 TTTTTTTTTAGTTGATCTGCAAGGTTTCTTGTGACATAAAGCTTTCAGTTCAGGATGCAC 139
************************************************************
consensus_11123#0 ATTTTGTTAGTTCCATCTCCTAAAAGCTACTGTTTGTATTTCTGATACTTGGTTCTTTCA 959
consensus_11123#1 ATTTTGTTAGTTCCATCTCCTAAAAGCTACTGTTTGTATTTCTGATACTTGGTTCTTTCA 199
************************************************************
consensus_11123#0 AGTACACAAGCAGTGCAGGCAGCAATCTGCTCCCGTGGTTCTGAATTGACAGCGTTGATA 1019
consensus_11123#1 AGTACACAAGCAGTGCAGGCAGCAATCTGCTCCCGTGGTTCTGAAAAAAAAAAAAAAAAA 259
********************************************* * * * *
consensus_11123#0 TCTTATATTTTATGTTGTAACCTCTTTCTGATGATAGAAATGACCACATATCAAGCTCCC 1079
consensus_11123#1 AAAAAAA----------------------------------------------------- 266
* *
consensus_11123#0 CGCATTAAAGACTTGTTTGTGTTTAAGATAAAAATAGTTTGAAGCTTAGT 1129
consensus_11123#1 --------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||