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Oryza sativa
cluster # 11129 cluster # 11129       Sequences # 8       consensus # 4


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_11129#0 length = 2546 sequences # 1  
consensus_11129#1 length = 610 sequences # 2  
consensus_11129#2 length = 425 sequences # 4  
consensus_11129#3 length = 368 sequences # 1  

consensusID : consensus_11129#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 2546
fasta sequence
                              [GAGAGAGTTAAGCTGGGCTCAGGGAGGACTAGGAGAGCAGCAGAGGCGACCGCTTGTTGTTGCTGCTGCGTTTGCGTTTCTAGGGTGTAAGCACGGGCCATCTTTCCGGTGGGAGCTTTGAATGCCAATCTTCACCACCATAGTAGTACTATCTCATTATCTCTCCCTCTGAGTCCTCTCTCGATCCGGTTCGGCTTGCTCGGGTTCGCGCAACGGAAAGGCGAGATTTTTGAGGGGATGAAGTAGTTGCCATTCTGATATCCTTCTCTATCTATCCGCTTCGACGAGCCGCGATCTCTGGGAGTTTATCTTTCAGGAATCTTGAGAAGCCTATGCAATTGCTGGTTCTTCATCAACCTTCGCAAGTTTTTTGGTTCCGTTTGTAGATATTAGCTAACCATAGATCAATTATAGTTTAGCCATCTTATAAACAAGCTGTTGTGAGAATTTGACTTCAGATGGGCCAAGGAGTTGCGGCTATTCCTGGCCTTGGGTCTCTTGGAGGCGTTTCCTGCGACAAATTCCTTTTCTCCTTTGCGAAATTCTACTTCAACATGTGGTTTCTACTGATCCAGGCATCCAAAGTTGGAATTTGATCACTTGTGAGGTAGCTTCTCTTCGCTTTCGTGGTTTGCCAGAATGGAGAGAGAGAATTCATGGCTGAGGAGAACCAAGTTCTCCCACACCGTGTACACAAGGTTGGATCACCAACGGGCGCCTATTGCTCCCCTTGGCAGGGATGTGGAGCAGAAACTGCAGAGATTTATTAGTATGGGGAAGTCTGTGTCGATGCCTGTTAACCGGGACGAGGATGCAGTGGCTGCGTTCAAGCACTCTGTGAGCTTGCCAACAGCCCGCTCCTCGCTTCAGATTGATAAGGAAAAGGCCAACAAGCAGAAGGCAGATTTTGATATCCCTTCAAGCCCTCCGGTGAACTCTGTTAATTCGAAGGGCCTGAAGGCAAGGAGCCTGGTCAAGAGCCCAAGCTCAGCGATGCTTCTCAGCTACTTGAACAAGGCACACCCGAATCGAGATTCAAACCTCAAGAAGACTGACAGACCTCAGCACAAGCTGAGATCAAAGTCCCCTCTTCCGAATGTAGCGCCTTCTGATGTGTTCAGAGAAGCACGTGCAAGTAGCAGGAGGTTTACAAGCCCTCCCCCAAAGCGAAGGGGATCTGAAAGAAGCATTTACGGCAAATCGTTTGATAGACAACTGTCTGATATGAGCCAAAGCCCTGATTTGTGTTCAACCCCAGTGTCCTCTGATAAGCACAAGTCTCTAAAGGATAGCTCATGGACTAGGAGATATTTTGATAATGGTGGAAGGAGGAGGGTTAGTGCAGTGGACGCTACTGAAGTTCGGAGGAACCGCGGGGTTAGTATGGCTCAGGCAGTTCAAACTACAGTTGATTGGACACTTGATCCATCTAAGCTGCTCGTGGGGCATAAGTTTGCATCTGGGGCATATAGCCGGCTCTACAAAGGACTCTATGATGATAAACCAGTTGCCATTAAATTTATTGGCAACCTGATGATGACGACAATGGGAAGATGGCTGCAAAACTTGAAAAACAGTATAACAGTGAGGTCAATGCTCTATCTCACCTCTATCACAAGAATGTGATCAAGCTAGTAGCAGCCTATAAATGCCCACCAGTTTTTTACATAATTACTGAGTTCCTCCCTGGAGGTTCCCTGAGGTCATATCTAAATAGCACAGAGCATCACCCCATCCCTCTGGAGAAGATCATATCCATTGCTCTCGATGTTGCCTGTGGGTTGGAGTACATTCACTCTCAAGGGGTCGTGCACCGTGACATTAAGCCAGAGAACATTCTCTTTGATGAGAACTTCTGTGTAAAGATTGCTGATTTTGGGATTGCCTGTGAGGAGTCAATGTGTGATGTGCTGGTGGAAGACGAAGGCACTTACCGGTGGATGGCCCCCGAGATGATCAAGCGTAAGGCATACAACCGGAAGGTCGACGTCTATAGCTTTGGACTACTCCTATGGGAAATGATCTCTGGAAGAATTCCTTTCGATGACTTAACCCCTCTCCAGGCGGCTTATGCTGTTGCAACTAGGCATGCGCGACCAGTAATTCCTCCAGAATGTCCAATGGCTCTGAGACCGTTGATCGAACAGTGTTGCTCATTGCAGCCCGAAAAGAGGCCTGATTTCTGGCAGATTGTTAAAATCCTGGAGGAATTTCATTCTGTTCTCTCCCAAGGTGGCTGCCTCGACTCACTGAAGAGCAGCAACAGCCAGGATCAGAAAAAGCGACTTCTGCATTGGATTCAAAAGCTGAAACCCTCACATAGCACCTGAGTTCCTGTAGTCTCTAGCATCCTTTCTGCCAGATGTTTTTATCCGGTTCTGTATGCTCAGTAGCTTAGCATAAGATTTTCATTTTTGTTCAGAAAAGGTGAACCTGTGTTCTAGGATGCTTGGACATGTTTATCAGGTGAATTGCAAGTAGGTTTACAGTACCTGTATATTGTGCTACCCTTCTGCTCTCTTCTCTGTTTTTGTGAAATTTAGTAG]

[+] EMBL AK069537             [GAGAGAGTTAAGCTGGGCTCAGGGAGGACTAGGAGAGCAGCAGAGGCGACCGCTTGTTGTTGCTGCTGCGTTTGCGTTTCTAGGGTGTAAGCACGGGCCATCTTTCCGGTGGGAGCTTTGAATGCCAATCTTCACCACCATAGTAGTACTATCTCATTATCTCTCCCTCTGAGTCCTCTCTCGATCCGGTTCGGCTTGCTCGGGTTCGCGCAACGGAAAGGCGAGATTTTTGAGGGGATGAAGTAGTTGCCATTCTGATATCCTTCTCTATCTATCCGCTTCGACGAGCCGCGATCTCTGGGAGTTTATCTTTCAGGAATCTTGAGAAGCCTATGCAATTGCTGGTTCTTCATCAACCTTCGCAAGTTTTTTGGTTCCGTTTGTAGATATTAGCTAACCATAGATCAATTATAGTTTAGCCATCTTATAAACAAGCTGTTGTGAGAATTTGACTTCAGATGGGCCAAGGAGTTGCGGCTATTCCTGGCCTTGGGTCTCTTGGAGGCGTTTCCTGCGACAAATTCCTTTTCTCCTTTGCGAAATTCTACTTCAACATGTGGTTTCTACTGATCCAGGCATCCAAAGTTGGAATTTGATCACTTGTGAGGTAGCTTCTCTTCGCTTTCGTGGTTTGCCAGAATGGAGAGAGAGAATTCATGGCTGAGGAGAACCAAGTTCTCCCACACCGTGTACACAAGGTTGGATCACCAACGGGCGCCTATTGCTCCCCTTGGCAGGGATGTGGAGCAGAAACTGCAGAGATTTATTAGTATGGGGAAGTCTGTGTCGATGCCTGTTAACCGGGACGAGGATGCAGTGGCTGCGTTCAAGCACTCTGTGAGCTTGCCAACAGCCCGCTCCTCGCTTCAGATTGATAAGGAAAAGGCCAACAAGCAGAAGGCAGATTTTGATATCCCTTCAAGCCCTCCGGTGAACTCTGTTAATTCGAAGGGCCTGAAGGCAAGGAGCCTGGTCAAGAGCCCAAGCTCAGCGATGCTTCTCAGCTACTTGAACAAGGCACACCCGAATCGAGATTCAAACCTCAAGAAGACTGACAGACCTCAGCACAAGCTGAGATCAAAGTCCCCTCTTCCGAATGTAGCGCCTTCTGATGTGTTCAGAGAAGCACGTGCAAGTAGCAGGAGGTTTACAAGCCCTCCCCCAAAGCGAAGGGGATCTGAAAGAAGCATTTACGGCAAATCGTTTGATAGACAACTGTCTGATATGAGCCAAAGCCCTGATTTGTGTTCAACCCCAGTGTCCTCTGATAAGCACAAGTCTCTAAAGGATAGCTCATGGACTAGGAGATATTTTGATAATGGTGGAAGGAGGAGGGTTAGTGCAGTGGACGCTACTGAAGTTCGGAGGAACCGCGGGGTTAGTATGGCTCAGGCAGTTCAAACTACAGTTGATTGGACACTTGATCCATCTAAGCTGCTCGTGGGGCATAAGTTTGCATCTGGGGCATATAGCCGGCTCTACAAAGGACTCTATGATGATAAACCAGTTGCCATTAAATTTATTGGCAACCTGATGATGACGACAATGGGAAGATGGCTGCAAAACTTGAAAAACAGTATAACAGTGAGGTCAATGCTCTATCTCACCTCTATCACAAGAATGTGATCAAGCTAGTAGCAGCCTATAAATGCCCACCAGTTTTTTACATAATTACTGAGTTCCTCCCTGGAGGTTCCCTGAGGTCATATCTAAATAGCACAGAGCATCACCCCATCCCTCTGGAGAAGATCATATCCATTGCTCTCGATGTTGCCTGTGGGTTGGAGTACATTCACTCTCAAGGGGTCGTGCACCGTGACATTAAGCCAGAGAACATTCTCTTTGATGAGAACTTCTGTGTAAAGATTGCTGATTTTGGGATTGCCTGTGAGGAGTCAATGTGTGATGTGCTGGTGGAAGACGAAGGCACTTACCGGTGGATGGCCCCCGAGATGATCAAGCGTAAGGCATACAACCGGAAGGTCGACGTCTATAGCTTTGGACTACTCCTATGGGAAATGATCTCTGGAAGAATTCCTTTCGATGACTTAACCCCTCTCCAGGCGGCTTATGCTGTTGCAACTAGGCATGCGCGACCAGTAATTCCTCCAGAATGTCCAATGGCTCTGAGACCGTTGATCGAACAGTGTTGCTCATTGCAGCCCGAAAAGAGGCCTGATTTCTGGCAGATTGTTAAAATCCTGGAGGAATTTCATTCTGTTCTCTCCCAAGGTGGCTGCCTCGACTCACTGAAGAGCAGCAACAGCCAGGATCAGAAAAAGCGACTTCTGCATTGGATTCAAAAGCTGAAACCCTCACATAGCACCTGAGTTCCTGTAGTCTCTAGCATCCTTTCTGCCAGATGTTTTTATCCGGTTCTGTATGCTCAGTAGCTTAGCATAAGATTTTCATTTTTGTTCAGAAAAGGTGAACCTGTGTTCTAGGATGCTTGGACATGTTTATCAGGTGAATTGCAAGTAGGTTTACAGTACCTGTATATTGTGCTACCCTTCTGCTCTCTTCTCTGTTTTTGTGAAATTTAGTAG]


>consensus_11129#0 GAGAGAGTTAAGCTGGGCTCAGGGAGGACTAGGAGAGCAGCAGAGGCGACCGCTTGTTGT TGCTGCTGCGTTTGCGTTTCTAGGGTGTAAGCACGGGCCATCTTTCCGGTGGGAGCTTTG AATGCCAATCTTCACCACCATAGTAGTACTATCTCATTATCTCTCCCTCTGAGTCCTCTC TCGATCCGGTTCGGCTTGCTCGGGTTCGCGCAACGGAAAGGCGAGATTTTTGAGGGGATG AAGTAGTTGCCATTCTGATATCCTTCTCTATCTATCCGCTTCGACGAGCCGCGATCTCTG GGAGTTTATCTTTCAGGAATCTTGAGAAGCCTATGCAATTGCTGGTTCTTCATCAACCTT CGCAAGTTTTTTGGTTCCGTTTGTAGATATTAGCTAACCATAGATCAATTATAGTTTAGC CATCTTATAAACAAGCTGTTGTGAGAATTTGACTTCAGATGGGCCAAGGAGTTGCGGCTA TTCCTGGCCTTGGGTCTCTTGGAGGCGTTTCCTGCGACAAATTCCTTTTCTCCTTTGCGA AATTCTACTTCAACATGTGGTTTCTACTGATCCAGGCATCCAAAGTTGGAATTTGATCAC TTGTGAGGTAGCTTCTCTTCGCTTTCGTGGTTTGCCAGAATGGAGAGAGAGAATTCATGG CTGAGGAGAACCAAGTTCTCCCACACCGTGTACACAAGGTTGGATCACCAACGGGCGCCT ATTGCTCCCCTTGGCAGGGATGTGGAGCAGAAACTGCAGAGATTTATTAGTATGGGGAAG TCTGTGTCGATGCCTGTTAACCGGGACGAGGATGCAGTGGCTGCGTTCAAGCACTCTGTG AGCTTGCCAACAGCCCGCTCCTCGCTTCAGATTGATAAGGAAAAGGCCAACAAGCAGAAG GCAGATTTTGATATCCCTTCAAGCCCTCCGGTGAACTCTGTTAATTCGAAGGGCCTGAAG GCAAGGAGCCTGGTCAAGAGCCCAAGCTCAGCGATGCTTCTCAGCTACTTGAACAAGGCA CACCCGAATCGAGATTCAAACCTCAAGAAGACTGACAGACCTCAGCACAAGCTGAGATCA AAGTCCCCTCTTCCGAATGTAGCGCCTTCTGATGTGTTCAGAGAAGCACGTGCAAGTAGC AGGAGGTTTACAAGCCCTCCCCCAAAGCGAAGGGGATCTGAAAGAAGCATTTACGGCAAA TCGTTTGATAGACAACTGTCTGATATGAGCCAAAGCCCTGATTTGTGTTCAACCCCAGTG TCCTCTGATAAGCACAAGTCTCTAAAGGATAGCTCATGGACTAGGAGATATTTTGATAAT GGTGGAAGGAGGAGGGTTAGTGCAGTGGACGCTACTGAAGTTCGGAGGAACCGCGGGGTT AGTATGGCTCAGGCAGTTCAAACTACAGTTGATTGGACACTTGATCCATCTAAGCTGCTC GTGGGGCATAAGTTTGCATCTGGGGCATATAGCCGGCTCTACAAAGGACTCTATGATGAT AAACCAGTTGCCATTAAATTTATTGGCAACCTGATGATGACGACAATGGGAAGATGGCTG CAAAACTTGAAAAACAGTATAACAGTGAGGTCAATGCTCTATCTCACCTCTATCACAAGA ATGTGATCAAGCTAGTAGCAGCCTATAAATGCCCACCAGTTTTTTACATAATTACTGAGT TCCTCCCTGGAGGTTCCCTGAGGTCATATCTAAATAGCACAGAGCATCACCCCATCCCTC TGGAGAAGATCATATCCATTGCTCTCGATGTTGCCTGTGGGTTGGAGTACATTCACTCTC AAGGGGTCGTGCACCGTGACATTAAGCCAGAGAACATTCTCTTTGATGAGAACTTCTGTG TAAAGATTGCTGATTTTGGGATTGCCTGTGAGGAGTCAATGTGTGATGTGCTGGTGGAAG ACGAAGGCACTTACCGGTGGATGGCCCCCGAGATGATCAAGCGTAAGGCATACAACCGGA AGGTCGACGTCTATAGCTTTGGACTACTCCTATGGGAAATGATCTCTGGAAGAATTCCTT TCGATGACTTAACCCCTCTCCAGGCGGCTTATGCTGTTGCAACTAGGCATGCGCGACCAG TAATTCCTCCAGAATGTCCAATGGCTCTGAGACCGTTGATCGAACAGTGTTGCTCATTGC AGCCCGAAAAGAGGCCTGATTTCTGGCAGATTGTTAAAATCCTGGAGGAATTTCATTCTG TTCTCTCCCAAGGTGGCTGCCTCGACTCACTGAAGAGCAGCAACAGCCAGGATCAGAAAA AGCGACTTCTGCATTGGATTCAAAAGCTGAAACCCTCACATAGCACCTGAGTTCCTGTAG TCTCTAGCATCCTTTCTGCCAGATGTTTTTATCCGGTTCTGTATGCTCAGTAGCTTAGCA TAAGATTTTCATTTTTGTTCAGAAAAGGTGAACCTGTGTTCTAGGATGCTTGGACATGTT TATCAGGTGAATTGCAAGTAGGTTTACAGTACCTGTATATTGTGCTACCCTTCTGCTCTC TTCTCTGTTTTTGTGAAATTTAGTAG



consensusID : consensus_11129#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 610
fasta sequence
                              [GACGAAGGCACTTNCCCGGTGGATGGCCCCCCGAGATGNTCAAGCGTAAGGCATACAACCGGAAGGTCGACGTCTATAGCTTTGGACTACTCCTATGGGAAATGATCTCTGGAAGAATTCNTTTCGATGACTTAACCCCTCTCCAGGCGGNTTATGCTGTTGCAACTAGGCATGCGCGACCAGTAATTCCT-CCAGAATGTCCAATGGCTCTGAGACCGTTGATC-GAACAGTGTTGCTCATTGCAGCCC-GAAAAGAGGCCTGATTTCTG-GCAGATTGTTAAAATCCTGGAGGAATTT-CATT-CTGTTCT-CTCCCAAGGT-GGCTGCCT-CGACT-CACTGAAGAGCAGCA-ACAGCCAGGATC-AGAAAAAGCGACT-T-CTGCATT-GGATTCAAAAGCTGAAACCCTCACATAGCACCT-GAGT-T-CCT-GT-AGTCT-CT-AGCAT-CCTTTCTGCCAGATGTTT-TTATCCGGT-TCT-GTATGCTCAGTAGCTTAGCATAAGATTTTCATTTTTGTTCAGAAAAGGTGAACCTGTGTTCTAGGATGCTTGGACATGTTTATCAGGTGAATTGCGAGTAGGTTTACAGTACCTGTATATTGTGCTAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL AU100693             [GACGAAGGCACTTNCCCGGTGGATGGCCCCCCGAGATGNTCAAGCGTAAGGCATACAACCGGAAGGTCGACGTCTATAGCTTTGGACTACTCCTATGGGAAATGATCTCTGGAAGAATTCNTTTCGATGACTTAACCCCTCTCCAGGCGGNTTATGCTGTTGCAACTAGGCATGCGCGACCAGTAATTCCT CCAGAATGTCCAATGGCTCTGAGACCGTTGATC GAACAGTGTTGCTCATTGCAGCCC GAAAAGAGGCCTGATTTCTG GCAGATTGTTAAAATCCTGGAGGAATTT CATT CTGTTCT CTCCCAAGGT GGCTGCCT CGACT CACTGAAGAGCAGCA ACAGCCAGGATC AGAAAAAGCGACT T CTGCATT GGATTCAAAAGCTGAAACCCTCACATAGCACCT GAGT T CCT GT AGTCT CT AGCAT CCTTTCTGCCAGATGTTT TTATCCGGT TCT GTATGCTCAGTAGCTTAGCATAAGATTTTCATTTTTGTTCAGAAAAGGTGAACCTGTGTTCTAGGATGCTTGGACATGTTTATCAGGTGAATTGCGAGTAGGTTTACAGTACCTGTATATTGTGCTAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL BI798492             [                                                                                                                                         CCTCTCCA GCGGCTTATGCTGTTGCAACTAGGCATGCGCGACCAGTAATTCCTGCCAGAATGTCCTATGGCTCTGAGACCGTTGATCTGAACAGTGTTGCTCATTGCAGCCCTGAAAAGAGGCCTGATTTCTGTGCAGATTGTTAAAATCCTGGAGGAATTTGCATTGCTGTTCTGCTCCCAAGGTGGGCTGCCTGCGACTGCACTGAAGAGCAGCATACAGCCAGGATCTAGAAAAAGCGACTGTGCTGCATTGGGATTCAAAAGCTGAAACCCTCACATAGCACCTGGAGTGTGCCTCGTGAGTCTGCTGAGGATGCCTTTCTGCCAGATGTTTGTTATCCGGTGTCTGGTATGCTCAGTAGCTTAGCATAAGATTTTCATTTTTGTTCAGAAAAGGTGAACCTGTGTTCTAGGATGCTTGGACATGTTTATCAGGTGAATTGCAACTAGGTTTACAGTACCTGTATATTGTGCTAAAAA                ]


>consensus_11129#1 GACGAAGGCACTTNCCCGGTGGATGGCCCCCCGAGATGNTCAAGCGTAAGGCATACAACC GGAAGGTCGACGTCTATAGCTTTGGACTACTCCTATGGGAAATGATCTCTGGAAGAATTC NTTTCGATGACTTAACCCCTCTCCAGGCGGNTTATGCTGTTGCAACTAGGCATGCGCGAC CAGTAATTCCTCCAGAATGTCCAATGGCTCTGAGACCGTTGATCGAACAGTGTTGCTCAT TGCAGCCCGAAAAGAGGCCTGATTTCTGGCAGATTGTTAAAATCCTGGAGGAATTTCATT CTGTTCTCTCCCAAGGTGGCTGCCTCGACTCACTGAAGAGCAGCAACAGCCAGGATCAGA AAAAGCGACTTCTGCATTGGATTCAAAAGCTGAAACCCTCACATAGCACCTGAGTTCCTG TAGTCTCTAGCATCCTTTCTGCCAGATGTTTTTATCCGGTTCTGTATGCTCAGTAGCTTA GCATAAGATTTTCATTTTTGTTCAGAAAAGGTGAACCTGTGTTCTAGGATGCTTGGACAT GTTTATCAGGTGAATTGCGAGTAGGTTTACAGTACCTGTATATTGTGCTAAAAAAAAAAA AAAAAAAAAA



consensusID : consensus_11129#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 425
fasta sequence
                              [GAACTTTTTCTCTCCGTGTTTAATTTTTCAGCATGCGCGACCAGTAATTCCTCCAGAATGTCCAATGGCTCTGAGACCGTTGATCGAACAGTGTTGCTCATTGCAGCCCGAAAAGAGGCCTGATTTCTGGCAGATTGTTAAAATCCTGGAGGAATTTCATTCTGTTCTCTCCCAAGGTGGCTGCCTCGACTCACTAAAGAGCAGCAACAGCCAGGATCAGAAAAAGCGACTTCTGCATTGGATTCAAAAGCTGAAACCCTCACATAGCACCTGAGTTCCTGTAGTCTCTAGGATCCTTTCTGCCAGATGTTTTTATCCGGTTCTGTATGCTCAGTAGCTTAGCATCAGATTTTCATTTTTGTTCAGAAAAGGTGAACCTGTGTTCTAGGATGCTTGGACATGTTTATCAGGTGAATTGCAAGTAG]

[-] EMBL BI305482             [GAACTTTTTCTCTCCGTGTTTAATTTTTCAGCATGCGCGACCAGTAATTCCTCCAGAATGTCCAATGGCTCTGAGACCGTTGATCGAACAGTGTTGCTCATTGCAGCCCGAAAAGAGGCCTGATTTCTGGCAGATTGTTAAAATCCTGGAGGAATTTCATTCTGTTCTCTCCCAAGGTGGCTGCCTCGACTCACTAAAGAGCAGCAACAGCCAGGATCAGAAAAAGCGACTTCTGCATTGGATTCAAAAGCTGAAACCCTCACATAGCACCTGAGTTCCTGTAGTCTCTAGGATCCTTTCTGCCAGATGTTTTTATCCGGTTCTGTATGCTCAGTAGCTTAGCATCAGATTTTCATTTTTGTTCAGAAAAGGTGAACCTGTGTTCTAGGATGCTTGGACATGTTTATCAGGTGAATTGCAAGTAG]
[-] EMBL CB966374             [GAACTTTTTCTCTCCGTGTTTAATTTTTCAGCATGCGCGACCAGTAATTCCTCCAGAATGTCCAATGGCTCTGAGACCGTTGATCGAACAGTGTTGCTCATTGCAGCCCGAAAAGAGGCCTGATTTCTGGCAGATTGTTAAAATCCTGGAGGAATTTCATTCTGTTCTCTCCCAAGGTGGCTGCCTCGACTCACTAAAGAGCAGCAACAGCCAGGATCAGAAAAAGCGACTTCTGCATTGGATTCAAAAGCTGAAACCCTCACATAGCACCTGAGTTCCTGTAGTCTCTAGGATCCTTTCTGCCAGATGTTTTTATCCGGTTCTGTATGCTCAGTAGCTTAGCATCAGATTTTCATTTTTGTTCAGAAAAGGTGAACCTGTGTTCTAGGATGCTTGGACATGTTTATCAGGTGAATTGCAAGTAG]
[-] EMBL CB967013             [GAACTTTTTCTCTCCGTGTTTAATTTTTCAGCATGCGCGACCAGTAATTCCTCCAGAATGTCCAATGGCTCTGAGACCGTTGATCGAACAGTGTTGCTCATTGCAGCCCGAAAAGAGGCCTGATTTCTGGCAGATTGTTAAAATCCTGGAGGAATTTCATTCTGTTCTCTCCCAAGGTGGCTGCCTCGACTCACTAAAGAGCAGCAACAGCCAGGATCAGAAAAAGCGACTTCTGCATTGGATTCAAAAGCTGAAACCCTCACATAGCACCTGAGTTCCTGTAGTCTCTAGGATCCTTTCTGCCAGATGTTTTTATCCGGTTCTGTATGCTCAGTAGCTTAGCATCAGATTTTCATTTTTGTTCAGAAAAGGTGAACCTGTGTTCTAGGATGCTTGGACATGTTTATCAGGTGAATTGCAAGTAG]
[-] EMBL BU673544             [GAACTTTTTCTCTCCGTGTTTAATTTTTCAGCATGCGCGACCAGTAATTCCTCCAGAATGTCCAATGGCTCTGAGACCGTTGATCGAACAGTGTTGCTCATTGCAGCCCGAAAAGAGGCCTGATTTCTGGCAGATTGTTAAAATCCTGGAGGAATTTCATTCTGTTCTCTCCCAAGGTGGCTGCCTCGACTCACTAAAGAGCAGCAACAGCCAGGATCAGAAAAAGCGACTTCTGCATTGGATTCAAAAGCTGAAACCCTCACATAGCACCTGAGTTCCTGTAGTCTCTAGGATCCTTTCTGCCAGATGTTTTTATCCGGTTCTGTATGCTCAGTAGCTTAGCATCAGATTTTCATTTTTGTTCAGAAAAGGTGAACCTGTGTTCTAGGATGCTTGGACATGTTTATCAGGTGAATTGCAAGTAG]


>consensus_11129#2 GAACTTTTTCTCTCCGTGTTTAATTTTTCAGCATGCGCGACCAGTAATTCCTCCAGAATG TCCAATGGCTCTGAGACCGTTGATCGAACAGTGTTGCTCATTGCAGCCCGAAAAGAGGCC TGATTTCTGGCAGATTGTTAAAATCCTGGAGGAATTTCATTCTGTTCTCTCCCAAGGTGG CTGCCTCGACTCACTAAAGAGCAGCAACAGCCAGGATCAGAAAAAGCGACTTCTGCATTG GATTCAAAAGCTGAAACCCTCACATAGCACCTGAGTTCCTGTAGTCTCTAGGATCCTTTC TGCCAGATGTTTTTATCCGGTTCTGTATGCTCAGTAGCTTAGCATCAGATTTTCATTTTT GTTCAGAAAAGGTGAACCTGTGTTCTAGGATGCTTGGACATGTTTATCAGGTGAATTGCA AGTAG



consensusID : consensus_11129#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 368
fasta sequence
                              [TGCTCGGGTTCGCGCAACGGAAAGGCGAGATTTTTGAGGGGATGAAGTAGTTGCCATTCTGATATCCTTCTCTATCTATCCGCTTCGACGAGCCGCGATCTCTGGGAGGAATCTTGAGAAGCCTATGCAATTGCTGGTTCTTCATCAACCTTCGCAAGTTTTTTGGTTCCGTTTGTAGATATTAGCTAACCATAGATCAATTATAGTTTAGCCATCTTATAAACAAGCTGTTGTGAGAATTTGACTTCAGATGGGCCAAGGAGTTGCGGCTATTCCTGGCCTTGGGTCTCTTGGAGGCGTTTCCTGCGACAAATTCCTTTTCTCCTTTGCGAAATTCTACTTCAACATGTGGTTTCTACTGATCCAGG]

[+] EMBL C26309               [TGCTCGGGTTCGCGCAACGGAAAGGCGAGATTTTTGAGGGGATGAAGTAGTTGCCATTCTGATATCCTTCTCTATCTATCCGCTTCGACGAGCCGCGATCTCTGGGAGGAATCTTGAGAAGCCTATGCAATTGCTGGTTCTTCATCAACCTTCGCAAGTTTTTTGGTTCCGTTTGTAGATATTAGCTAACCATAGATCAATTATAGTTTAGCCATCTTATAAACAAGCTGTTGTGAGAATTTGACTTCAGATGGGCCAAGGAGTTGCGGCTATTCCTGGCCTTGGGTCTCTTGGAGGCGTTTCCTGCGACAAATTCCTTTTCTCCTTTGCGAAATTCTACTTCAACATGTGGTTTCTACTGATCCAGG]


>consensus_11129#3 TGCTCGGGTTCGCGCAACGGAAAGGCGAGATTTTTGAGGGGATGAAGTAGTTGCCATTCT GATATCCTTCTCTATCTATCCGCTTCGACGAGCCGCGATCTCTGGGAGGAATCTTGAGAA GCCTATGCAATTGCTGGTTCTTCATCAACCTTCGCAAGTTTTTTGGTTCCGTTTGTAGAT ATTAGCTAACCATAGATCAATTATAGTTTAGCCATCTTATAAACAAGCTGTTGTGAGAAT TTGACTTCAGATGGGCCAAGGAGTTGCGGCTATTCCTGGCCTTGGGTCTCTTGGAGGCGT TTCCTGCGACAAATTCCTTTTCTCCTTTGCGAAATTCTACTTCAACATGTGGTTTCTACT GATCCAGG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_11129#0      GAGAGAGTTAAGCTGGGCTCAGGGAGGACTAGGAGAGCAGCAGAGGCGACCGCTTGTTGT 60
consensus_11129#3      ------------------------------------------------------------
consensus_11129#1      ------------------------------------------------------------
consensus_11129#2      ------------------------------------------------------------
                                                                                   

consensus_11129#0      TGCTGCTGCGTTTGCGTTTCTAGGGTGTAAGCACGGGCCATCTTTCCGGTGGGAGCTTTG 120
consensus_11129#3      ------------------------------------------------------------
consensus_11129#1      --------------GACGAAGGCACTTNCCCGGTGGATGGCCCCCCGAGATGNTCAAGCG 46
consensus_11129#2      ------------------------------------------------------------
                                                                                   

consensus_11129#0      AATGCCAATCTTCACCACCATAGTAGTACTATCTCATTATCTCTCCCTCTGAGTCCTCTC 180
consensus_11129#3      ------------------------------------------------------------
consensus_11129#1      TAAGGCATACAACCGGAAGGTCGACGTCTATAGCTTTGGACTACTCCTATGGGAAATGAT 106
consensus_11129#2      ------------------------------------------------------------
                                                                                   

consensus_11129#0      TCGATCCGGTTCGGCTTGCTCGGGTTCGCGCAACGGAAAGGCGAGAT-TTTTGAGGGGAT 239
consensus_11129#3      ----------------TGCTCGGGTTCGCGCAACGGAAAGGCGAGAT-TTTTGAGGGGAT 43
consensus_11129#1      CTCTGGAAGAATTCNTTTCGATGACTTAACCCCTCTCCAGGCGGNTTATGCTGTTGCAAC 166
consensus_11129#2      ---------------------------GAACTTTTTCTCTCCGTGTT-TAATTTTTCA-- 30
                                                     *          **   * *  *        

consensus_11129#0      GAAGTAGTTGCCATTCTGATATCCTTCTC--TATCTATCCGCTTCGACGAGCCGCGATCT 297
consensus_11129#3      GAAGTAGTTGCCATTCTGATATCCTTCTC--TATCTATCCGCTTCGACGAGCCGCGATCT 101
consensus_11129#1      TAGGCATGCGCGACCAGTAATTCCTCCAGAATGTCCAATGGCTCTGA-GACCGTTGATCG 225
consensus_11129#2      ---GCATGCGCGACCAGTAATTCCTCCAGAATGTCCAATGGCTCTGA-GACCGTTGATCG 86
                          * *   ** *     *  **** *    * ** *   ***  ** ** *   **** 

consensus_11129#0      CTGGGAGTTTATCTTTCAGGAATCTTGAGAAGCCTATGCAATTGCTGGTTCTTCATCAAC 357
consensus_11129#3      CTGGGAG------------GAATCTTGAGAAGCCTATGCAATTGCTGGTTCTTCATCAAC 149
consensus_11129#1      AACAGTGTTGCTCATTGCAGCCCGAAAAGAGGCCTGATTTCTGGCAGATTGTTAAA-ATC 284
consensus_11129#2      AACAGTGTTGCTCATTGCAGCCCGAAAAGAGGCCTGATTTCTGGCAGATTGTTAAA-ATC 145
                           * *            *       *** ****      * ** * ** ** *  * *

consensus_11129#0      CTTCGCAAGTTT--TTTGGTTCCGTTTGTAGATA------TTAGCTAACCATAGATCAAT 409
consensus_11129#3      CTTCGCAAGTTT--TTTGGTTCCGTTTGTAGATA------TTAGCTAACCATAGATCAAT 201
consensus_11129#1      CTGGAGGAATTTCATTCTGTTCTCTCCCAAGGTGGCTGCCTCGACTCACTGAAGAGCAGC 344
consensus_11129#2      CTGGAGGAATTTCATTCTGTTCTCTCCCAAGGTGGCTGCCTCGACTCACTAAAGAGCAGC 205
                       **     * ***  **  ****  *    ** *       *   ** **   *** **  

consensus_11129#0      TATAGTTTAGCCATCTTATAAACAAGCTGTTGTGAGAATTTGACTTCAGATGGGCCAAGG 469
consensus_11129#3      TATAGTTTAGCCATCTTATAAACAAGCTGTTGTGAGAATTTGACTTCAGATGGGCCAAGG 261
consensus_11129#1      AACAGCCAGG--ATCAGAAAAAGCGACTTCTGCA-----TTGGATTCAAA--AGCTGAAA 395
consensus_11129#2      AACAGCCAGG--ATCAGAAAAAGCGACTTCTGCA-----TTGGATTCAAA--AGCTGAAA 256
                        * **    *  ***  * ***    **  **       ***  **** *   **  *  

consensus_11129#0      AGTTGCGGCTATTCCTGGCCTTGGGTC-TCTTGGAGGCGTTTCCTGCGACAAATTCCTTT 528
consensus_11129#3      AGTTGCGGCTATTCCTGGCCTTGGGTC-TCTTGGAGGCGTTTCCTGCGACAAATTCCTTT 320
consensus_11129#1      CCCTCACATAGCACCTGAGTTCCTGTAGTCTCTAGCATCCTTTCTGCCAGATGTTTTTAT 455
consensus_11129#2      CCCTCACATAGCACCTGAGTTCCTGTAGTCTCTAGGATCCTTTCTGCCAGATGTTTTTAT 316
                          *         ****   *   **  ***         ** **** * *  **  * *

consensus_11129#0      TCTCCTTTGCGAAATTC-TACTTCAACATGTGGTTTCTACTG--ATCCAGGCATCCAAAG 585
consensus_11129#3      TCTCCTTTGCGAAATTC-TACTTCAACATGTGGTTTCTACTG--ATCCAGG--------- 368
consensus_11129#1      CCGGTTCTGTATGCTCAGTAGCTTAGCATAAGATTTTCATTTTTGTTCAGAAAAGGTGAA 515
consensus_11129#2      CCGGTTCTGTATGCTCAGTAGCTTAGCATCAGATTTTCATTTTTGTTCAGAAAAGGTGAA 376
                        *   * **     *   **  * * ***  * ***  * *    * ***          

consensus_11129#0      TTGGAATTTGATCACTTGTGAGGTAGCTTCTCTTCGCTTTCGTGGTTTGCCAGAATGGAG 645
consensus_11129#3      ------------------------------------------------------------
consensus_11129#1      CCTGTGTTCTAGGATGCTTGGACATGTTTATCAGGTGAATTGCGAGTAGGTTTACAGTAC 575
consensus_11129#2      CCTGTGTTCTAGGATGCTTGGACATGTTTATCAGGTGAATTGCAAGTAG----------- 425
                                                                                   

consensus_11129#0      AGAGAGAATTCATGGCTGAGGAGAACCAAGTTCTCCCACACCGTGTACACAAGGTTGGAT 705
consensus_11129#3      ------------------------------------------------------------
consensus_11129#1      CTGTATATTGTGCTAAAAAAAAAAAAAAAAAAAAA------------------------- 610
consensus_11129#2      ------------------------------------------------------------
                                                                                   

consensus_11129#0      CACCAACGGGCGCCTATTGCTCCCCTTGGCAGGGATGTGGAGCAGAAACTGCAGAGATTT 765
consensus_11129#3      ------------------------------------------------------------
consensus_11129#1      ------------------------------------------------------------
consensus_11129#2      ------------------------------------------------------------
                                                                                   

consensus_11129#0      ATTAGTATGGGGAAGTCTGTGTCGATGCCTGTTAACCGGGACGAGGATGCAGTGGCTGCG 825
consensus_11129#3      ------------------------------------------------------------
consensus_11129#1      ------------------------------------------------------------
consensus_11129#2      ------------------------------------------------------------
                                                                                   

consensus_11129#0      TTCAAGCACTCTGTGAGCTTGCCAACAGCCCGCTCCTCGCTTCAGATTGATAAGGAAAAG 885
consensus_11129#3      ------------------------------------------------------------
consensus_11129#1      ------------------------------------------------------------
consensus_11129#2      ------------------------------------------------------------
                                                                                   

consensus_11129#0      GCCAACAAGCAGAAGGCAGATTTTGATATCCCTTCAAGCCCTCCGGTGAACTCTGTTAAT 945
consensus_11129#3      ------------------------------------------------------------
consensus_11129#1      ------------------------------------------------------------
consensus_11129#2      ------------------------------------------------------------
                                                                                   

consensus_11129#0      TCGAAGGGCCTGAAGGCAAGGAGCCTGGTCAAGAGCCCAAGCTCAGCGATGCTTCTCAGC 1005
consensus_11129#3      ------------------------------------------------------------
consensus_11129#1      ------------------------------------------------------------
consensus_11129#2      ------------------------------------------------------------
                                                                                   

consensus_11129#0      TACTTGAACAAGGCACACCCGAATCGAGATTCAAACCTCAAGAAGACTGACAGACCTCAG 1065
consensus_11129#3      ------------------------------------------------------------
consensus_11129#1      ------------------------------------------------------------
consensus_11129#2      ------------------------------------------------------------
                                                                                   

consensus_11129#0      CACAAGCTGAGATCAAAGTCCCCTCTTCCGAATGTAGCGCCTTCTGATGTGTTCAGAGAA 1125
consensus_11129#3      ------------------------------------------------------------
consensus_11129#1      ------------------------------------------------------------
consensus_11129#2      ------------------------------------------------------------
                                                                                   

consensus_11129#0      GCACGTGCAAGTAGCAGGAGGTTTACAAGCCCTCCCCCAAAGCGAAGGGGATCTGAAAGA 1185
consensus_11129#3      ------------------------------------------------------------
consensus_11129#1      ------------------------------------------------------------
consensus_11129#2      ------------------------------------------------------------
                                                                                   

consensus_11129#0      AGCATTTACGGCAAATCGTTTGATAGACAACTGTCTGATATGAGCCAAAGCCCTGATTTG 1245
consensus_11129#3      ------------------------------------------------------------
consensus_11129#1      ------------------------------------------------------------
consensus_11129#2      ------------------------------------------------------------
                                                                                   

consensus_11129#0      TGTTCAACCCCAGTGTCCTCTGATAAGCACAAGTCTCTAAAGGATAGCTCATGGACTAGG 1305
consensus_11129#3      ------------------------------------------------------------
consensus_11129#1      ------------------------------------------------------------
consensus_11129#2      ------------------------------------------------------------
                                                                                   

consensus_11129#0      AGATATTTTGATAATGGTGGAAGGAGGAGGGTTAGTGCAGTGGACGCTACTGAAGTTCGG 1365
consensus_11129#3      ------------------------------------------------------------
consensus_11129#1      ------------------------------------------------------------
consensus_11129#2      ------------------------------------------------------------
                                                                                   

consensus_11129#0      AGGAACCGCGGGGTTAGTATGGCTCAGGCAGTTCAAACTACAGTTGATTGGACACTTGAT 1425
consensus_11129#3      ------------------------------------------------------------
consensus_11129#1      ------------------------------------------------------------
consensus_11129#2      ------------------------------------------------------------
                                                                                   

consensus_11129#0      CCATCTAAGCTGCTCGTGGGGCATAAGTTTGCATCTGGGGCATATAGCCGGCTCTACAAA 1485
consensus_11129#3      ------------------------------------------------------------
consensus_11129#1      ------------------------------------------------------------
consensus_11129#2      ------------------------------------------------------------
                                                                                   

consensus_11129#0      GGACTCTATGATGATAAACCAGTTGCCATTAAATTTATTGGCAACCTGATGATGACGACA 1545
consensus_11129#3      ------------------------------------------------------------
consensus_11129#1      ------------------------------------------------------------
consensus_11129#2      ------------------------------------------------------------
                                                                                   

consensus_11129#0      ATGGGAAGATGGCTGCAAAACTTGAAAAACAGTATAACAGTGAGGTCAATGCTCTATCTC 1605
consensus_11129#3      ------------------------------------------------------------
consensus_11129#1      ------------------------------------------------------------
consensus_11129#2      ------------------------------------------------------------
                                                                                   

consensus_11129#0      ACCTCTATCACAAGAATGTGATCAAGCTAGTAGCAGCCTATAAATGCCCACCAGTTTTTT 1665
consensus_11129#3      ------------------------------------------------------------
consensus_11129#1      ------------------------------------------------------------
consensus_11129#2      ------------------------------------------------------------
                                                                                   

consensus_11129#0      ACATAATTACTGAGTTCCTCCCTGGAGGTTCCCTGAGGTCATATCTAAATAGCACAGAGC 1725
consensus_11129#3      ------------------------------------------------------------
consensus_11129#1      ------------------------------------------------------------
consensus_11129#2      ------------------------------------------------------------
                                                                                   

consensus_11129#0      ATCACCCCATCCCTCTGGAGAAGATCATATCCATTGCTCTCGATGTTGCCTGTGGGTTGG 1785
consensus_11129#3      ------------------------------------------------------------
consensus_11129#1      ------------------------------------------------------------
consensus_11129#2      ------------------------------------------------------------
                                                                                   

consensus_11129#0      AGTACATTCACTCTCAAGGGGTCGTGCACCGTGACATTAAGCCAGAGAACATTCTCTTTG 1845
consensus_11129#3      ------------------------------------------------------------
consensus_11129#1      ------------------------------------------------------------
consensus_11129#2      ------------------------------------------------------------
                                                                                   

consensus_11129#0      ATGAGAACTTCTGTGTAAAGATTGCTGATTTTGGGATTGCCTGTGAGGAGTCAATGTGTG 1905
consensus_11129#3      ------------------------------------------------------------
consensus_11129#1      ------------------------------------------------------------
consensus_11129#2      ------------------------------------------------------------
                                                                                   

consensus_11129#0      ATGTGCTGGTGGAAGACGAAGGCACTTACCGGTGGATGGCCCCCGAGATGATCAAGCGTA 1965
consensus_11129#3      ------------------------------------------------------------
consensus_11129#1      ------------------------------------------------------------
consensus_11129#2      ------------------------------------------------------------
                                                                                   

consensus_11129#0      AGGCATACAACCGGAAGGTCGACGTCTATAGCTTTGGACTACTCCTATGGGAAATGATCT 2025
consensus_11129#3      ------------------------------------------------------------
consensus_11129#1      ------------------------------------------------------------
consensus_11129#2      ------------------------------------------------------------
                                                                                   

consensus_11129#0      CTGGAAGAATTCCTTTCGATGACTTAACCCCTCTCCAGGCGGCTTATGCTGTTGCAACTA 2085
consensus_11129#3      ------------------------------------------------------------
consensus_11129#1      ------------------------------------------------------------
consensus_11129#2      ------------------------------------------------------------
                                                                                   

consensus_11129#0      GGCATGCGCGACCAGTAATTCCTCCAGAATGTCCAATGGCTCTGAGACCGTTGATCGAAC 2145
consensus_11129#3      ------------------------------------------------------------
consensus_11129#1      ------------------------------------------------------------
consensus_11129#2      ------------------------------------------------------------
                                                                                   

consensus_11129#0      AGTGTTGCTCATTGCAGCCCGAAAAGAGGCCTGATTTCTGGCAGATTGTTAAAATCCTGG 2205
consensus_11129#3      ------------------------------------------------------------
consensus_11129#1      ------------------------------------------------------------
consensus_11129#2      ------------------------------------------------------------
                                                                                   

consensus_11129#0      AGGAATTTCATTCTGTTCTCTCCCAAGGTGGCTGCCTCGACTCACTGAAGAGCAGCAACA 2265
consensus_11129#3      ------------------------------------------------------------
consensus_11129#1      ------------------------------------------------------------
consensus_11129#2      ------------------------------------------------------------
                                                                                   

consensus_11129#0      GCCAGGATCAGAAAAAGCGACTTCTGCATTGGATTCAAAAGCTGAAACCCTCACATAGCA 2325
consensus_11129#3      ------------------------------------------------------------
consensus_11129#1      ------------------------------------------------------------
consensus_11129#2      ------------------------------------------------------------
                                                                                   

consensus_11129#0      CCTGAGTTCCTGTAGTCTCTAGCATCCTTTCTGCCAGATGTTTTTATCCGGTTCTGTATG 2385
consensus_11129#3      ------------------------------------------------------------
consensus_11129#1      ------------------------------------------------------------
consensus_11129#2      ------------------------------------------------------------
                                                                                   

consensus_11129#0      CTCAGTAGCTTAGCATAAGATTTTCATTTTTGTTCAGAAAAGGTGAACCTGTGTTCTAGG 2445
consensus_11129#3      ------------------------------------------------------------
consensus_11129#1      ------------------------------------------------------------
consensus_11129#2      ------------------------------------------------------------
                                                                                   

consensus_11129#0      ATGCTTGGACATGTTTATCAGGTGAATTGCAAGTAGGTTTACAGTACCTGTATATTGTGC 2505
consensus_11129#3      ------------------------------------------------------------
consensus_11129#1      ------------------------------------------------------------
consensus_11129#2      ------------------------------------------------------------
                                                                                   

consensus_11129#0      TACCCTTCTGCTCTCTTCTCTGTTTTTGTGAAATTTAGTAG 2546
consensus_11129#3      -----------------------------------------
consensus_11129#1      -----------------------------------------
consensus_11129#2      -----------------------------------------
                                                                




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)