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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11130#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1154 fasta sequence
[CATTGCAGACTCCCTCTCACGCCGCCGCCGCCTCGCCGCTTTCCTCTCTCTCCACCGCCACCGCCACCGCCACCGCCGGCGCGTACTCGAGCAACGTTGAGGCAGGAGTTGGGATAGGTATCTGAGTTGAGGTGAAGGACGGGAGCGATGGCGGAGGCGGCGCCGATTGGCCTGTCGTGGGCGCCCAAGCTGCCCTCCCTGCCGACGACCAGCGGCGGGAAGAAGGACACGGGAGCCAGCTCTAGCAGAGCGCAGGGGTCGCTCTGGAAGCCCGCGAGCGAGCTCGTCGACGGGCTCTTCGTGCCACCGAGGGACCCGAGGAAGGCCAACAAGCTGGCCAGGAAGAACGTCAAGGACACCTCCGGCAAGGGCTGGTTCGACATGCCGGCTCCCACCATCACTCCTGAGTTGAAGAAAGATCTTGAGATTTTGCAGCTGAGACATGTAATGGACCCAAAAAGACACTTCAAGAGGGCAGGAAAATCCAAGGCCCTTCCGAAATACTTCCAAGTTGGTACAGTTATTGAGCCTGCATCTGAGTTCTTCTCAAGTAGGCTGACAAAGAGGGAGCGCAAAACAACATTGGTTGATGAGCTCTTATCTGATCAACATCTTAAGAACTACAGGATGCGCAAAGTAAGGGAAATTCAGGAGAGCCGCACTCCAGGAGGCAGCCAGAAGTGGAGGAACAAGGGC-AAGAAAACACTCAAAAGAGCCAAGGATAGGCGGAAATGAGTTTTTACTGCTGCTACTCTCACTCAGTTTACCATGAGGAAGAGATGACTGATTATTGGGAGCTAAAGGTTGAGACAACCTTCAAATTGCGACAAAATTAGATTGTGATACCATTGTAATGT-GGGAAA-TTCATGCAATATGAT-GGATGCATT-AGCTGGTGGAGCTGAGCT-AGATT-GTCGGTTGCTGT-ATCTCCC-TCTTTTCATTTATGAGCCCACTGTTTCAGGTATGCTGTACCTGGATTTCAGAGTAAAAGTACCAATGTATTGCTTGGTCTGTGAGTGTGCCGTGTCTCCTGGAGTCCTGATCATATGCAGCACAGCTGTTATACAAATGTACTCCGTACGTTTCTTTCTCTGTGTAGAATACTACTAGAACACATGTGCTTCCCGGTCAAAAAANAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AK070160 [CATTGCAGACTCCCTCTCACGCCGCCGCCGCCTCGCCGCTTTCCTCTCTCTCCACCGCCACCGCCACCGCCACCGCCGGCGCGTACTCGAGCAACGTTGAGGCAGGAGTTGGGATAGGTATCTGAGTTGAGGTGAAGGACGGGAGCGATGGCGGAGGCGGCGCCGATTGGCCTGTCGTGGGCGCCCAAGCTGCCCTCCCTGCCGACGACCAGCGGCGGGAAGAAGGACACGGGAGCCAGCTCTAGCAGAGCGCAGGGGTCGCTCTGGAAGCCCGCGAGCGAGCTCGTCGACGGGCTCTTCGTGCCACCGAGGGACCCGAGGAAGGCCAACAAGCTGGCCAGGAAGAACGTCAAGGACACCTCCGGCAAGGGCTGGTTCGACATGCCGGCTCCCACCATCACTCCTGAGTTGAAGAAAGATCTTGAGATTTTGCAGCTGAGACATGTAATGGACCCAAAAAGACACTTCAAGAGGGCAGGAAAATCCAAGGCCCTTCCGAAATACTTCCAAGTTGGTACAGTTATTGAGCCTGCATCTGAGTTCTTCTCAAGTAGGCTGACAAAGAGGGAGCGCAAAACAACATTGGTTGATGAGCTCTTATCTGATCAACATCTTAAGAACTACAGGATGCGCAAAGTAAGGGAAATTCAGGAGAGCCGCACTCCAGGAGGCAGCCAGAAGTGGAGGAACAAGGGC AAGAAAACACTCAAAAGAGCCAAGGATAGGCGGAAATGAGTTTTTACTGCTGCTACTCTCACTCAGTTTACCATGAGGAAGAGATGACTGATTATTGGGAGCTAAAGGTTGAGACAACCTTCAAATTGCGACAAAATTAGATTGTGATACCATTGTAATGT GGGAAA TTCATGCAATATGAT GGATGCATT AGCTGGTGGAGCTGAGCT AGATT GTCGGTTGCTGT ATCTCCC TCTTTTCATTTATGAGCCCACTGTTTCAGGTATGCTGTACCTGGATTTCAGAGTAAAAGTACCAATGTATTGC ]
[+] EMBL AK059941 [ CTCCCTCTCACGCCGCCGCCGCCTCGCCGCTTTCCTCTCTCTCCACCGCCACCGCCACCGCCACCGCCGGCGCGTACTCGAGCAACGTTGAGGCAGGAGTTGGGATAGGTATCTGAGTTGAGGTGAAGGACGGGAGCGATGGCGGAGGCGGCGCCGATTGGCCTGTCGTGGGCGCCCAAGCTGCCCTCCCTGCCGACGACCAGCGGCGGGAAGAAGGACACGGGAGCCAGCTCTAGCAGAGCGCAGGGGTCGCTCTGGAAGCCCGCGAGCGAGCTCGTCGACGGGCTCTTCGTGCCACCGAGGGACCCGAGGAAGGCCAACAAGCTGGCCAGGAAGAACGTCAAGGACACCTCCGGCAAGGGCTGGTTCGACATGCCGGCTCCCACCATCACTCCTGAGTTGAAGAAAGATCTTGAGATTTTGCAGCTGAGACATGTAATGGACCCAAAAAGACACTTCAAGAGGGCAGGAAAATCCAAGGCCCTTCCGAAATACTTCCAAGTTGGTACAGTTATTGAGCCTGCATCTGAGTTCTTCTCAAGTAGGCTGACAAAGAGGGAGCGCAAAACAACATTGGTTGATGAGCTCTTATCTGATCAACATCTTAAGAACTACAGGATGCGCAAAGTAAGGGAAATTCAGGAGAGCCGCACTCCAGGAGGCAGCCAGAAGTGGAGGAACAAGGGC AAGAAAACACTCAAAAGAGCCAAGGATAGGCGGAAATGAGTTTTTACTGCTGCTACTCTCACTCAGTTTACCATGAGGAAGAGATGACTGATTATTGGGAGCTAAAGGTTGAGACAACCTTCAAATTGCGACAAAATTAGATTGTGATACCATTGTAATGT GGGAAA TTCATGCAATATGAT GGATGCATT AGCTGGTGGAGCTGAGCT AGATT GTCGGTTGCTGT ATCTCCC TCTTTTCATTTATGAGCCCACTGTTTCAGGTATGCTGTACCTGGATTTCAGAGTAAAAGTACCAATGTATTGC ]
[+] EMBL CF331039 [ CTCCCTCTCACGCCGCCGCCGCCTCGCCGCTTTCCTCTCTCTCCACCGCCACCGCCACCGCCACCGCCGGCGCGTACTCGAGCAACGTTGAGGCAGGAGTTGGGATAGGTATCTGAGTTGAGGTGAAGGACGGGAGCGATGGCGGAGGCGGCGCCGATTGGCCTGTCGTGGGCGCCCAAGCTGCCCTCCCTGCCGACGACCAGCGGCGGGAAGAAGGACACGGGAGCCAGCTCTAGCATAGCGCAGGGGTCGCTCTGGAAGCCCGCGAGCGAGCTCGTCGACGGGCTCTTCGTGCCACCGAGGGACCCGAGGAAGGCCAACAAGCTGGCCAGGAAGAACGTCAAGGACACCTCCGGCAAGGGCTGGTTCGACATGCCGGCTCCCACCATCACTCCTGAGTTGAAGAAAGATCTTGAGATTTTGCAGCTGAGACATGTAATGGACCCAAAAAGACACTTCAAGAGGGCAGGAAAATCCAAGGCCCTTCCTAAATACTTCCAAGTTGGTACAGTTATTGAGCCTGCATCTGAGTTCTTCTCAAGTAGGCTGACAAAGAGGGAGCGC ]
[-] EMBL CF331040 [ CCCACCATCACTCCTGAGTTGAAGAAAGATCTTGAGATTTTGCAGCTGAGACATGTAATGGACCCAAAAAGACACTTCAAGAGGGCAGGAAAATCCAAGGCCCTTCCTAAATACTTCCAAGTTGGTACAGTTATTGAGCCTGCATCTGAGTTCTTCTCAAGTAGGCTGACAAAGAGGGAGCGCAAAACAACATTGGTTGATGAGCTCTTATCTGATCAACATCTTAAGAACTACAGGATGCGCAAAGTAAGGGAAATTCAGGAGAGCCGCACTCCAGGAGGCAGCCAGAAGTGGAGGAACAAGGGC AAGAAAACACTCAAAAGAGCCAAGGATAGGCGGAAATGAGTTTTTACTGCTGCTACTCTCACTCAGTTTACCATGAGGAGGAGATGACTGATTATTGGGAGCTAAAGGTTGAGACAACCTTCAAATTGCGACAAAATTAGATTGTGATACCATTGTAATGT GGGAAA TTCATGCAATATGAT GGATGCATT AGCTGGTGGAGCTGAGCT AGATT GTCGGTTGCTGT ATCTCCC TCTTTTCATTTATGAGCCCACTGTTTCAGGaaaaaaaaa ]
[+] EMBL AU065183 [ GTTATTGAGCCTGCATCTGAGTTCTTCTCAAGTAGGCTGACAAAGAGGGAGCGCAAAACAACATTGGTTGATGAGCTCTTATCTGATCAACATCTTAAGAACTACAGGATGCGCAAAGTAAGGGAAATTCAGGAGAGCCGCACNCCAGGAGGCAGCCAGAAGTGGAGGAACAAGGGC AAGAAAACACTCAAAAGAGCCAAGGATAGGCGGAAATGAGTTTTTACTGCTGCTACTCTCACTCAGTTTACCATGAGGAAGAGATGACTGATTATTGGGAGCTAAAGGTTGAGACAACCTTCAAATTGCGACNAAATTAGATTGTGATACCATTGTAATGTGGGGAAA TTCATGCAATATGAT GGATGCATT AGCTGGTGGAGCTGAGCT AGATT GTCGGGTGCTGT ATCTCCC TCTTTTCA TTATGAGNCCACTG TTCAGGT TGCTG ]
[+] EMBL AU065182 [ GTTATTGAGCCTGCATCTGAGTTCTTCTCAAGTAGGCTGACAAAGAGGGAGCGCAAAACAACATTGGTTGATGAGCTCTTATCTGATCAACATCTTAAGAACTACAGGATGCGCAAAGTAAGGGAAATTCAGGAGAGCCGCACTCCAGGAGGCAGCCAGAAGTGGAGGAACAAGGGCAAAGAAAACACTCAANAGAGCCAAGGATAGGCGGAAATGAGTTTTTACTGCTGCTACTCTCACTCAGTTTACCATGAGGAAGAGATGACTGATTATTGGGAGCTAAAGGTTGAGACAACCTTCAAATTGCGACAAAATTAGATTGTGATACCATTGTAATGT GGGAAANTCCATGCCATATGATGGGATGCATTAANCTGGTGGAGCTGAGCTAAGATTGGNCGGTTGCTGTAATCTCCCNCCTTTTCATTANGGAGCC ]
[+] EMBL AU091438 [ CTGAGCT AGATT GTCGGTTGCTGT ATCTCCC TCTTTTCATTTATGAGCCCACTGTTTNAGGTATGCTGTACCTGGATTTCAGAGTAAAAGTACCAATGTATTGCTTGGTCTGTGAGTGTGCCGTGTCTCCTGGAGTCCTGATCATATGCAGCACAGCTGTTATACAAATGTACTCCGTACGTTTCTTTCTCTGTGTAGAATACTACTAGAACACATGTGCTTCCCGGTCAAAAAANAAAAAAAAAAAAAAAAAAAA]
consensusID : consensus_11130#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 257 fasta sequence
[GCTGAGNTAGATTGTCGGTTGCTGTNTCTCCCTCTTTTCATTTATGAGCCCNCTGTTTCAGGTATGCTGTNCCTGGATTTCAGNGTAAAAGTNCCAATGTATTGCTTGGTCTGTGAGTGTGCCGTGTCTCCTGGAGTCCTGATCATATGCNGCACNGCTGTTATACAAAGTTACTCCGTACGTTTCTTTCTCTGTGTNGAATACTNCTNGNACANATGNGNTTNNNGGTCNAANAAAANAAAAAAAAAAAAAAAAAA]
[+] EMBL AU091441 [GCTGAGNTAGATTGTCGGTTGCTGTNTCTCCCTCTTTTCATTTATGAGCCCNCTGTTTCAGGTATGCTGTNCCTGGATTTCAGNGTAAAAGTNCCAATGTATTGCTTGGTCTGTGAGTGTGCCGTGTCTCCTGGAGTCCTGATCATATGCNGCACNGCTGTTATACAAAGTTACTCCGTACGTTTCTTTCTCTGTGTNGAATACTNCTNGNACANATGNGNTTNNNGGTCNAANAAAANAAAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_11130#0 CATTGCAGACTCCCTCTCACGCCGCCGCCGCCTCGCCGCTTTCCTCTCTCTCCACCGCCA 60
consensus_11130#1 ------------------------------------------------------------
consensus_11130#0 CCGCCACCGCCACCGCCGGCGCGTACTCGAGCAACGTTGAGGCAGGAGTTGGGATAGGTA 120
consensus_11130#1 ------------------------------------------------------------
consensus_11130#0 TCTGAGTTGAGGTGAAGGACGGGAGCGATGGCGGAGGCGGCGCCGATTGGCCTGTCGTGG 180
consensus_11130#1 ------------------------------------------------------------
consensus_11130#0 GCGCCCAAGCTGCCCTCCCTGCCGACGACCAGCGGCGGGAAGAAGGACACGGGAGCCAGC 240
consensus_11130#1 ------------------------------------------------------------
consensus_11130#0 TCTAGCAGAGCGCAGGGGTCGCTCTGGAAGCCCGCGAGCGAGCTCGTCGACGGGCTCTTC 300
consensus_11130#1 ------------------------------------------------------------
consensus_11130#0 GTGCCACCGAGGGACCCGAGGAAGGCCAACAAGCTGGCCAGGAAGAACGTCAAGGACACC 360
consensus_11130#1 ------------------------------------------------------------
consensus_11130#0 TCCGGCAAGGGCTGGTTCGACATGCCGGCTCCCACCATCACTCCTGAGTTGAAGAAAGAT 420
consensus_11130#1 ------------------------------------------------------------
consensus_11130#0 CTTGAGATTTTGCAGCTGAGACATGTAATGGACCCAAAAAGACACTTCAAGAGGGCAGGA 480
consensus_11130#1 ------------------------------------------------------------
consensus_11130#0 AAATCCAAGGCCCTTCCGAAATACTTCCAAGTTGGTACAGTTATTGAGCCTGCATCTGAG 540
consensus_11130#1 ------------------------------------------------------------
consensus_11130#0 TTCTTCTCAAGTAGGCTGACAAAGAGGGAGCGCAAAACAACATTGGTTGATGAGCTCTTA 600
consensus_11130#1 ------------------------------------------------------------
consensus_11130#0 TCTGATCAACATCTTAAGAACTACAGGATGCGCAAAGTAAGGGAAATTCAGGAGAGCCGC 660
consensus_11130#1 ------------------------------------------------------------
consensus_11130#0 ACTCCAGGAGGCAGCCAGAAGTGGAGGAACAAGGGCAAGAAAACACTCAAAAGAGCCAAG 720
consensus_11130#1 ------------------------------------------------------------
consensus_11130#0 GATAGGCGGAAATGAGTTTTTACTGCTGCTACTCTCACTCAGTTTACCATGAGGAAGAGA 780
consensus_11130#1 ------------------------------------------------------------
consensus_11130#0 TGACTGATTATTGGGAGCTAAAGGTTGAGACAACCTTCAAATTGCGACAAAATTAGATTG 840
consensus_11130#1 ------------------------------------------------------------
consensus_11130#0 TGATACCATTGTAATGTGGGAAATTCATGCAATATGATGGATGCATTAGCTGGTGGAGCT 900
consensus_11130#1 ---------------------------------------------------------GCT 3
***
consensus_11130#0 GAGCTAGATTGTCGGTTGCTGTATCTCCCTCTTTTCATTTATGAGCCCACTGTTTCAGGT 960
consensus_11130#1 GAGNTAGATTGTCGGTTGCTGTNTCTCCCTCTTTTCATTTATGAGCCCNCTGTTTCAGGT 63
*** ****************** ************************* ***********
consensus_11130#0 ATGCTGTACCTGGATTTCAGAGTAAAAGTACCAATGTATTGCTTGGTCTGTGAGTGTGCC 1020
consensus_11130#1 ATGCTGTNCCTGGATTTCAGNGTAAAAGTNCCAATGTATTGCTTGGTCTGTGAGTGTGCC 123
******* ************ ******** ******************************
consensus_11130#0 GTGTCTCCTGGAGTCCTGATCATATGCAGCACAGCTGTTATACAAATGTACTCCGTACGT 1080
consensus_11130#1 GTGTCTCCTGGAGTCCTGATCATATGCNGCACNGCTGTTATACAAAGTTACTCCGTACGT 183
*************************** **** ************* ************
consensus_11130#0 TTCTTTCTCTGTGTAGAATACTACTAGAACACATGTGCTTCCCGGTCAAAAAANAAAAAA 1140
consensus_11130#1 TTCTTTCTCTGTGTNGAATACTNCTNGNACANATGNGNTTNNNGGTCNAANAAAANAAAA 243
************** ******* ** * *** *** * ** **** ** ** * ****
consensus_11130#0 AAAAAAAAAAAAAA 1154
consensus_11130#1 AAAAAAAAAAAAAA 257
**************
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||