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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11133#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 830 fasta sequence
[GCTTCTTCAGCTCCCGACCTCGTCTTCAGCTCCGATCGCTCGCTGCGGCAGATCCCGCCGCCAAGAAAGACGCCGGCGGACGGAGCGGGAGCGACGACCTCGCCGGGCCGCACGCACGCCCGCACGCACCACCACCTGCTGAAATCCCTGCGTCGTCTCGCCGTGGTGCTAGCTAATACAGGAAAATTACTTCAGTTTCTACTCAGCATTCTTGTGTGATAATGGCGTCAGCAGCAATCTACAGCCTTTTCATCATTAACAAATCTGGCGGCCTTATATACTACAAGGACTATGGCTCAGCAGGTAGGACGGACACCAATGACAGTCTACGCTTGGCAAGTCTTTGGCATTCCATGCATGCTATCTCCCAGCAGCTGTCCCCTACACCTGGCTGTGAAGGCATTGACCTTCTACAAGCCCACAACTTTGATCTCCATTGCTTCCAGTCC-CTCACAGGGACAAAGTTTTTTGCTGTATGCGAAACTGGTGCTCAAAATATCGAGACTCTACT-GAAAGTCATATACGAGCTCTACACGGATTTTGTTCTGAAAAATCCATT-CTACGAGATGGAGATGCCAATTCGTT-GTGAGCTTTTTGATCTCAACCTGGCTCAGGTCATTCAGAAGGACCGCGTCACACTTCTGGGTCGATGAATCATTTAGAAAACATGAC-GCACCATGTC-TTTGTATGTGGC-TTATATGACATGTATGGTGTCAGTAGGGTACTTGGAATTCAGGCAAGTCATTACACTGCATCACAAAGTCCATATACAGTGTGCAGTC-GATTC-CTTCTAGTTCTGAAAATTAC-TTTATTC-CTGAAGTATCATTAAA]
[+] EMBL CF295802 [GCTTCTTCAGCTCCCGACCTCGTCTTCAGCTCCGATCGCTCGCTGCGGCAGATCCCGCCGCCAAGAAAGACGCCGGCGGACGGAGCGGGAGCGACGACCTCGCCGGGCCGCACGCACGCCCGCACGCACCACCACCTGCTGAAATCCCTGCGTCGTCTCGCCGTGGTGCTAGCTAATACAGGAAAATTACTTCAGTTTCTACTCAGCATTCTTGTGTGATAATGGCGTCAGCAGCAATCTACAGCCTTTTCATCATTAACAAATCTGGCGGCCTTATATACTACAAGGACTATGGCTCAGCAGGTAGGACGGACACCAATGACAGTCTACGCTTGGCAAGTCTTTGGCATTCCATGCATGCTATCTCCCAGCAGCTGTCCCCTACACATGGCTGCGAAGGCATTGACCTTCTACAAGCCCATAACTTTGATCTCCATTGCTTCCAGTCC CTCACAGGGACAAAGTTTTTTGCTGTATGCGAAACTGGTGCTCAAAATATCGAGACACTACT GAAAGTCATATACGAGCTCTACACGGATTTTGTTTTGAAAAATCCATT CTACGAAATGGAGATGCCAATTCGTT GTGAGCTTTTTGATCTC ]
[+] EMBL AK058258 [ GATAATGGCGTTAGCAGCAATCTACAGCCTTTTCATCATTAACAAATCTGGCGGCCTTATATACTACAAGGACTATGGCTCAGCAGGGAGGACGGACACCAATGACAGTCTACGCTTGGCAAGTCTTTGGCATTCCATGCATGCTATCTCCCAGCAGCTGTCCCCTACACCTGGCTGTGAAGGCATTGACCTTCTACAAGCCCACAACTTTGATCTCCATTGCTTCCAGTCC CTCACAGGGACAAAGTTTTTTGCTGTATGCGAAACTGGTGCTCAAAATATCGAGACTCTACT GAAAGTCATATACGAGCTCTACACGGATTTTGTTCTGAAAAATCCATT CTACGAGATGGAGATGCCAATTCGTT GTGAGCTTTTTGATCTCAACCTGGCTCAGGTCATTCAGAAGGACCGCGTCACACTTCTGGGTCGATGAATCATTTAGAAAACATGAC GCACCATGTC TTTGTATGTGGC TTATATGACATGTATGGTGTCAGTAGGGTACTTGGAATTCAGGCAAGTCATTACACTGCATCACAAAGTCCATATACAGTGTGCAGTC GATTC CTTCTAGTTCTGAAAATTAC TTTATTC CTGAAGTATCATT ]
[+] EMBL BI811700 [ TGCATGCTATCTCCCA CA CTGTCCCCTACACCT GCTGTGAAGGCATTGACCTTCTACAAGCCCACAACTTTGATCTCCATTGCTTCCAGTCCACTCACAGGGACAAA TTTTTTCCTGTAT CGAAACTGGTGCTCAAAATATCGAGACTCTACTGGAAAGTCATATACGAGCTCTACACGGATTTTGTTCTG AAAATCCATTGCTACGAGATGGAGAT CCAATTCGTTGGTGAGC TTTTGATCTCAACCTGGCTCAGGTCATTCAGAAGGACCGCGTCACACTTCTGGGTCGATGAATCATTTAGAAAACATGACAGCACCATGTCATTTGTATGTGGCATTATATGACATGTATGGTGTCAGTAGGGTACTTGGAATTCAGGCAAGTCATTACACTGCATCACAAAGTCCATATACAGTGTGCAGTCAGATTCACTTCTAGTTCTGAAAATTACATTTATTCACTGAAGTAaaaaaaaa]
consensusID : consensus_11133#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 728 fasta sequence
[CCGAAGCGGCGGCCGCGAAGCCCGAGGTGAACCTGGTGACCGGGGATGGCGGGTACTTGCTCCAGGACGTGCCGCATGTGTGCGACTACCTCCCCGATCTACCGACATACTCAAATCCACTGCAAGATAACCCGGCATACTCGGTTGTGAAGCAATACTTTGTAAACCCAGATGACACTGTCTGCCATAAGGCCATTGTTCACAAGGATGGCCCTACATGCTACCACTTCCGTCGTGCTGGGCCTCGACAGAGGGTGTTTTTTGAATCGGATGAGGTCCATGCATGCATTGTCACATGTGGAGGACTGTGCCCTGGACTGAACACTGTCATTAGGGAAATTGTATGTGGCTTATATGACATGTATGGCGTCAGTAGGGTACTTGGAATTCAGGGTGGGTATAGAGGTTTCTATGCTTGCAACACCATTGACTTGAGTCCAAAGAGTGTAAACGACATTCCCAAAAGGGGTGGAACTGTTCTTGGGACATCACGTGGAGGCCATGACACCATGAAGATTGTTGACAGCATCCAGGATCGTGGTATAAATCAGGTTTATGTAATTGGTGGTGATGGTACTCAAAGGGGTGCAGGAGTGATTTTTGAAGAGATTAGAAGACGTGGTCTCAAGGTTGCTGTTGCTGGCATTCCAAAGACGATTGATAATGATATACCAGTAATTGACAGATCATTTGGTTTCCACACTGCAGTTGAGGAGGCCCAACGTGCA]
[+] EMBL CB626511 [CCGAAGCGGCGGCCGCGAAGCCCGAGGTGAACCTGGTGACCGGGGATGGCGGGTACTTGCTCCAGGACGTGCCGCATGTGTGCGACTACCTCCCCGATCTACCGACATACTCAAATCCACTGCAAGATAACCCGGCATACTCGGTTGTGAAGCAATACTTTGTAAACCCAGATGACACTGTCTGCCATAAGGCCATTGTTCACAAGGATGGCCCTACATGCTACCACTTCCGTCGTGCTGGGCCTCGACAGAGGGTGTTTTTTGAATCGGATGAGGTCCATGCATGCATTGTCACATGTGGAGGACTGTGCCCTGGACTGAACACTGTCATTAGGGAAATTGTATGTGGCTTATATGACATGTATGGCGTCAGTAGGGTACTTGGAATTCAGGGTGGGTATAGAGGTTTCTATGCTTGCAACACCATTGACTTGAGTCCAAAGAGTGTAAACGACATTCCCAAAAGGGGTGGAACTGTTCTTGGGACATCACGTGGAGGCCATGACACCATGAAGATTGT ]
[+] EMBL CB633076 [ CGGCCCTTTAACCCGAGGTGAAGCTGGTGACCGGGGATGGCGGGTACGTGCTCGAGGACGTGCCGCATGTGTGCGACTACCTCCCCGATCTACCGACATACTCAAATCCACTGCAAGATAACCCGGCATACTCGGTTGTGAAGCAATACTTTGTAAACCCAGATGACACTGTCTGCCAGAAGGCCATTGTTCACAAGGATGGCCCTAGAGGCAACCACTTCCGTCGTGCTGGGCCTCAACAGAGGGTGTTTTTTGAATCGGATGAGGTCCATGCATGCATTGTCACATGTGGAGGACTGTGCCCTGGACTGAACACTGTCATTAGGGAAATTGTATGTGGCTTATATGACATGTATGGTGTCAGTAGGGTACTTGGAATTCAGGGTGGGTATAGAGGTTTCTATGCTTGTAACACCATTGACTTGAGTCCAAAGAGTGTAAACGACATTCACAAAAGGGGTGGAACTGTTCTTGGGACATCACGTGGAGGCCATGACACCATGAAGATTGTTGACAGCATCCAGGATCGTGGTATAAATCAGGTTTATGTAATTGGTGGTGATGGTACTCAAAGGGGTGCAGGAGTGATTTTTGAAGAGATTAGAAGACGTGGTCTCAAGGTTGCTGTTGCTGGCATTCCAAAGACGATTGATAATGATATACCAGTAATTGACAGATCATTTGGTTTCCACACTGCAGTTGAGGAGGCCCAACGTGCA]
consensusID : consensus_11133#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 474 fasta sequence
[CTACACATGGCTGCGAAGGCATTGACCTTTTACAAGCCCATAACTTTGATCTCCATTGCTTCCAGTCCCTCACAGGGACAAAGTTTTTTGCTGTATGCGAAACTGGTGCTCAAAATATCGAGACACTACTGAAAGTCATATACGAGCTCTACACGGATTTTGTTTTGAAAAATCCATTCTACGAGATGGAGATGCCAATTCGTTGTGAGCTTTTTGATCTCAACCTGGCTCAGGTCATTCAGAAGGACCGCGTCACACTTCTGGGTCGATGAATCATTTAGAAAACATGATGCACCATGTCTTTGTAATTTTTCGGATTCCTGCACTGCCTTTGGATTTGCTCAGCCACAAACCAAAGTATTCTTTCGTATGTGTTGCTGATAATTAATGATATGAACATCATGATGTATTGCTCACTTACTCATCTGTAAATCTCTTATAAGGTGCTGGATCGTAGCATTTTGCAGAAAAAAA]
[-] EMBL CF295801 [CTACACATGGCTGCGAAGGCATTGACCTTTTACAAGCCCATAACTTTGATCTCCATTGCTTCCAGTCCCTCACAGGGACAAAGTTTTTTGCTGTATGCGAAACTGGTGCTCAAAATATCGAGACACTACTGAAAGTCATATACGAGCTCTACACGGATTTTGTTTTGAAAAATCCATTCTACGAGATGGAGATGCCAATTCGTTGTGAGCTTTTTGATCTCAACCTGGCTCAGGTCATTCAGAAGGACCGCGTCACACTTCTGGGTCGATGAATCATTTAGAAAACATGATGCACCATGTCTTTGTAATTTTTCGGATTCCTGCACTGCCTTTGGATTTGCTCAGCCACAAACCAAAGTATTCTTTCGTATGTGTTGCTGATAATTAATGATATGAACATCATGATGTATTGCTCACTTACTCATCTGTAAATCTCTTATAAGGTGCTGGATCGTAGCATTTTGCAGAAAA ]
[-] EMBL CF331025 [ GATGCCAATTCGTTGTGAGCTTTTTGATCTCAACCTGGCTCAGGTCATTCAGAAGGACCGCGTCACACTTCTGGGTCGATGAATCATTTAGAAAACATGATGCACCATGTCTTTGTAATTTTTCGGATTCCTGCACTGCCTTTGGATTTGCTCAGCCACAAACCAAAGTATTCTTTCGTATGTGTTGCTGATAATTAATGATATGAACGTCATGATGTATTGCTCACTTACTCATCTGTAAATCTCTTATAAGGTGCTGGATCGTAGCATTTTGCAAAAAAAAA]
consensusID : consensus_11133#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 472 fasta sequence
[AGCTTCTTCAGCTCCCGACCTCGTCTTCAGCTCCGATCGCTCGCCGCGGCAGATCCCGCCGCCAAGAAAGACGCCGGCGGACGGAGCGGGAGCGACGACCTCGCCGGGCCGCACGCACGCCCGCACGCACCACCACCTGCTGAAATCCTTGTGTCGTCTCGCCGTGGTGCTAGTTTCTACTCAGCATTCTTGTTTGTTAATGGCGTCAGCAGCAATCTACAGCCTTTTCATCATTAACAAATCTGGCGGCCTTATATACTACAAGGTATTGTTTACTGTACTCCTGTTTCTCTTCGTTCTTTCGGAGCTGGACTCTGAACACCTTGCACATCTCATTTGTCCAGGACTATGGCTCAGCAGGTAGGACGGACACCAATGACAGTCTACGCTTGGCAAGTCTTTGGCATTCCATGCATGCTATCTCCCAGCAGCTGTCCCCTACACATGGCTGCGAAGGCATTGACCTTCTACA]
[+] EMBL CF331026 [AGCTTCTTCAGCTCCCGACCTCGTCTTCAGCTCCGATCGCTCGCCGCGGCAGATCCCGCCGCCAAGAAAGACGCCGGCGGACGGAGCGGGAGCGACGACCTCGCCGGGCCGCACGCACGCCCGCACGCACCACCACCTGCTGAAATCCTTGTGTCGTCTCGCCGTGGTGCTAGTTTCTACTCAGCATTCTTGTTTGTTAATGGCGTCAGCAGCAATCTACAGCCTTTTCATCATTAACAAATCTGGCGGCCTTATATACTACAAGGTATTGTTTACTGTACTCCTGTTTCTCTTCGTTCTTTCGGAGCTGGACTCTGAACACCTTGCACATCTCATTTGTCCAGGACTATGGCTCAGCAGGTAGGACGGACACCAATGACAGTCTACGCTTGGCAAGTCTTTGGCATTCCATGCATGCTATCTCCCAGCAGCTGTCCCCTACACATGGCTGCGAAGGCATTGACCTTCTACA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_11133#0 ------------------------------------------------------GCTTCT 6
consensus_11133#3 -----------------------------------------------------AGCTTCT 7
consensus_11133#2 -----------------------------CTACACATGGCTGCGAAGGCATTGACCTTTT 31
consensus_11133#1 CCGAAGCGGCGGCCGCGAAGCCCGAGGTGAACCTGGTGACCGGGGATGGCGGGTACTTGC 60
***
consensus_11133#0 TCA-GCTCCCGACCTCG-TCTTCAGC---TCCGATCGCTCGCTGCGGCAGATCCCGCCGC 61
consensus_11133#3 TCA-GCTCCCGACCTCG-TCTTCAGC---TCCGATCGCTCGCCGCGGCAGATCCCGCCGC 62
consensus_11133#2 ACAAGCCCATAACTTTGATCTCCATTGCTTCCAGTCCCTCACAGGGACAAAGTTTTTTGC 91
consensus_11133#1 TCCAGGACGTGCCGCATGTGTGCGACTACCTCCCCGATCTACCGACATACTCAAATCCAC 120
* * * * * * * * * * * *
consensus_11133#0 CAAGAAAGACGCCGGCGGACGGAGCGGGAGCG-ACGACCTCGCCGGGCCGCAC-GCACGC 119
consensus_11133#3 CAAGAAAGACGCCGGCGGACGGAGCGGGAGCG-ACGACCTCGCCGGGCCGCAC-GCACGC 120
consensus_11133#2 TGTATGCGAAACTGGTGCTCAAAATATC-GAG-AC-ACTACTGAAAGTCATAT-ACGAGC 147
consensus_11133#1 TGCAAGATAACCCGGCATACTCGGTTGTGAAGCAATACTTTGTAAACCCAGATGACACTG 180
* * ** * * * ** * * *
consensus_11133#0 CCGCACGCACCACCACCTGCTGAAATCCCTGCGTCGTCTCGCCGTGGTGCTAGCTAATAC 179
consensus_11133#3 CCGCACGCACCACCACCTGCTGAAATCCTTGTGTCGTCTCGCCGTGGTGCTAG------- 173
consensus_11133#2 TC-TACACGG-ATTTTGTTTTGAAAAATCCATTCTACGAGATGGAGATGCCAA------- 198
consensus_11133#1 TCTGCCATAAGGCCATTGTTCACAAGGATGGCCCTACATGCTACCACTTCCGTCGTGCTG 240
* * ** * *
consensus_11133#0 AGGAAAATTACTTCAGTTTCTACTCAGCATTCTTGTGTGATAATGGCGTCAGCAGCAATC 239
consensus_11133#3 ----------------TTTCTACTCAGCATTCTTGTTTGTTAATGGCGTCAGCAGCAATC 217
consensus_11133#2 ----------------TTCGTTGTGAGCTTTTTGATCTCAACCTGGC-TCAG--GTCATT 239
consensus_11133#1 GGCCTCGACAGAG-GGTGTTTTTTGAA---TCGGATGAGGTCCATGCATGCATTGTCACA 296
* * * * * * ** * * *
consensus_11133#0 TA-CAGCCTTTTCATCATTAACAAATCTGGCGGCCTTATATACTACAAGGACTATGGCTC 298
consensus_11133#3 TA-CAGCCTTTTCATCATTAACAAATCTGGCGGCCTTATATACTACAAGG--TATTGTTT 274
consensus_11133#2 CA-GAAGGACCGCGTCA----CACTTCTGG-GTCGATGAATCATTTAGAAAACATGATGC 293
consensus_11133#1 TGTGGAGGACTGTGCCCTGGACTGAAC-ACTGTCATTAGGGAAATTGTA---TGTGGCTT 352
* * * * * * *
consensus_11133#0 AGCAGGTAGGACGGACACCAATGACAGTCTACGCTT----GGCAAGTCTTTGGCATTCCA 354
consensus_11133#3 ACT--GTACTCCTGTTTCTCTT--CGTTCTTTCGGA----GCTGGACTCTGAACACCTTG 326
consensus_11133#2 ACC--ATGTCTTTGTAATTTTTCGGATTCCTGCACT----GC----CTTTGGA---TTTG 340
consensus_11133#1 ATATGACATGTATGGCGTCAGTAGGGTACTTGGAATTCAGGGTGGGTATAGAGGTTTCTA 412
* * * * *
consensus_11133#0 TGCATGCTATCTCCCAGCAGCTGTCCCCTA-CACCTGG------CTGTGAAG-GCATTGA 406
consensus_11133#3 CACATCTCATTTGTCCAGGACTATGGCTCAGCAGGTAG------GACGGACA-CCAATGA 379
consensus_11133#2 CTCA-GCCACAAACCAAAG--TATTCTTTCGTATGTGT------TGCTGATAATTAATGA 391
consensus_11133#1 TGCTTGCAACACCATTGACTTGAGTCCAAAGAGTGTAAACGACATTCCCAAAAGGGGTGG 472
* * * * **
consensus_11133#0 CCTTCTACAAGCC-CACAACTTTGA--TCTCCATTGCTTCCAGTCCCTCACAGGGACAAA 463
consensus_11133#3 CAGTCTACGCTTGGCAAGTCTTTGG--CATTCCATGCATGCTATCTCCCA-------GCA 430
consensus_11133#2 TATGAACATCATGATGTATTGCTCA--CTTACTCATCTGTAAATCTCTTATAAG---GTG 446
consensus_11133#1 AACTGTTCTTGGGACATCACGTGGAGGCCATGACACCATGAAGATTGTTGACAG--CATC 530
*
consensus_11133#0 GTTTTTTGCTGTATGCGAAACTGGTGCTCAAAATATCGAGACTCTACTGAAAGTCATATA 523
consensus_11133#3 GCTGTCCCCTACACA------TGGCTGCGAAGGCATTGACCTTCTACA------------ 472
consensus_11133#2 CTGGATCGTAGCATT------TTGCAGAAAAAAA-------------------------- 474
consensus_11133#1 CAGGATCGTGGTATAAATCAGGTTTATGTAATTGGTGGTGATGGTACTCAAAGGGGTGCA 590
* **
consensus_11133#0 CGAGCTCTACACGGATTTTGTTCTGAAAAATCCATTCTACGAGATGGAGATGCCAATTCG 583
consensus_11133#3 ------------------------------------------------------------
consensus_11133#2 ------------------------------------------------------------
consensus_11133#1 GGAGTGATTTTTGAAGAGATTAGAAGACGTGGTCTCAAGGTTGCTGTTGCTGGCATTCCA 650
consensus_11133#0 TTGTGAGCTTTTTGATCTCAACCTGGCTCAGGTCATTCAGAAGGACCGCGTCACACTTCT 643
consensus_11133#3 ------------------------------------------------------------
consensus_11133#2 ------------------------------------------------------------
consensus_11133#1 AAGACGATTGATAATGATATACCAGTAATTGACAGATCATTTGGTTTCCACACTGCAGTT 710
consensus_11133#0 GGGTCGATGAATCATTTAGAAAACATGACGCACCATGTCTTTGTATGTGGCTTATATGAC 703
consensus_11133#3 ------------------------------------------------------------
consensus_11133#2 ------------------------------------------------------------
consensus_11133#1 GAGGAGGCCCAACGTGCA------------------------------------------ 728
consensus_11133#0 ATGTATGGTGTCAGTAGGGTACTTGGAATTCAGGCAAGTCATTACACTGCATCACAAAGT 763
consensus_11133#3 ------------------------------------------------------------
consensus_11133#2 ------------------------------------------------------------
consensus_11133#1 ------------------------------------------------------------
consensus_11133#0 CCATATACAGTGTGCAGTCGATTCCTTCTAGTTCTGAAAATTACTTTATTCCTGAAGTAT 823
consensus_11133#3 ------------------------------------------------------------
consensus_11133#2 ------------------------------------------------------------
consensus_11133#1 ------------------------------------------------------------
consensus_11133#0 CATTAAA 830
consensus_11133#3 -------
consensus_11133#2 -------
consensus_11133#1 -------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||