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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11137#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1222 fasta sequence
[TTCGGCGTGCGGCTCACGTCGCCGCCGGAGGTGGCGATGAAGAAGAGCGCGAGCATGAGCTGCATCGCGTCGTCGCTCGGGAGTGGCGGTGGGTCAGGGGGTTCGTCGCCGGCGGGAACGGGAAGGGGAGGAGGAGGAGGGGGAGAGGGCGCGGCCGGGTACGCGTCCGACGACCCCACGCACGCCTCCTGCTCGACGAATGGCCGCGGCGAGCGGAAGAAAGGTACACCTTGGACTGAAGAAGAGCATAGAATGTTTCTAATGGGTCTGCAGAAGCTTGGTAAAGGAGACTGGCGTGGGATCTCTCGTAATTTTGTTGTTTCCAGGACACCAACTCAGGTGGCTAGCCATGCTCAAAAGTACTTCATTAGACAGACAAACTCATCAAGAAGGAAGAGGAGGTCAAGCTTGTTTGACATGGTCCCAGAAATGCCCATGGACGAATCCCCAGTGGTCGTAGAACAGCTTATGCTCCATAGTACTCAAGACGAAGCCACAAGCTCAAATCAATTGCCAATATCACATCTTGTGAAACAGAAGGAACCTGAGTTTGCTAGACACCTGTCGGATTTGCAGCTAAGGAAGCATGAGGAATCTGAGTTCACAGAACCTTCACTAGCAGCACTAGACTTGGAGATGAACCATGCTGCACCTTTCAAGACTAAATTTGTTCTGACAATGCCAACATTCTACCCGGCATTAATACCTGTTCCACTAACTCTTTGGCCT-CCAAATGTTGCTAATGTGGGTGAATCAGGCACAAATCATGAAATCCTAAAGCCCACTCCAGTGAATGGAAAGGAGGTGATCAATAAGGCTGATGAGGTTGTTGGCATGT-CCAAGCTTACCATAGGTGACGGCAGCTCTAACTCCATAGAACCCTCTGCTCTTTCCCTTCAGCTTACTGGACCGACAAATACAAGACAATCAGCTTTTCATGTGAACCCACCAATGGCTGGACCTGACCTAAATAAGAGAAACAACAGCCCAATTCATGCAGTTTGAGAAAGCATGGAAAAGGCCTGCTGGGTCAAATCTTATAGATTATATATTACTTCCCCAATACCATAGAATGTTGCATAAGGTCCTGAGCATGTACTTTTGTAGCAGCTTCTGAGTTGTATCACCATATTATGTTCTTTGATATCGATAATGAAAAATGTTGTATGCATATACCTTTGATAATACATCCTCCATCCTTTGGAGAAAATGGTTTTCAGTT]
[+] EMBL AK071611 [TTCGGCGTGCGGCTCACGTCGCCGCCGGAGGTGGCGATGAAGAAGAGCGCGAGCATGAGCTGCATCGCGTCGTCGCTCGGGAGTGGCGGTGGGTCAGGGGGTTCGTCGCCGGCGGGAACGGGAAGGGGAGGAGGAGGAGGGGGAGAGGGCGCGGCCGGGTACGCGTCCGACGACCCCACGCACGCCTCCTGCTCGACGAATGGCCGCGGCGAGCGGAAGAAAGGTACACCTTGGACTGAAGAAGAGCATAGAATGTTTCTAATGGGTCTGCAGAAGCTTGGTAAAGGAGACTGGCGTGGGATCTCTCGTAATTTTGTTGTTTCCAGGACACCAACTCAGGTGGCTAGCCATGCTCAAAAGTACTTCATTAGACAGACAAACTCATCAAGAAGGAAGAGGAGGTCAAGCTTGTTTGACATGGTCCCAGAAATGCCCATGGACGAATCCCCAGTGGTCGTAGAACAGCTTATGCTCCATAGTACTCAAGACGAAGCCACAAGCTCAAATCAATTGCCAATATCACATCTTGTGAAACAGAAGGAACCTGAGTTTGCTAGACACCTGTCGGATTTGCAGCTAAGGAAGCATGAGGAATCTGAGTTCACAGAACCTTCACTAGCAGCACTAGACTTGGAGATGAACCATGCTGCACCTTTCAAGACTAAATTTGTTCTGACAATGCCAACATTCTACCCGGCATTAATACCTGTTCCACTAACTCTTTGGCCT CCAAATGTTGCTAATGTGGGTGAATCAGGTACAAATCATGAAATCCTAAAGCCCACTCCAGTGAATGGAAAGGAGGTGATCAATAAGGCTGATGAGGTTGTTGGCATGT CCAAGCTTACCATAGGTGACGGCAGCTCTAACTCCATAGAACCCTCTGCTCTTTCCCTTCAGCTTACTGGACCGACAAATACAAGACAATCAGCTTTTCATGTGAACCCACCAATGGCTGGACCTGACCTAAATAAGAGAAACAACAGCCCAATTCATGCAGTTTGAGAAAGCATGGAAAAGGCCTGCTGGGTCAAATCTTATAGATTATATATTACTTCCCCAATACCATAGAATGTTGCATAAGGTCCTGAGCATGTACTTTTGTAGCAGCTTCTGAGTTGTATCACCATATTATGTTCTTTGATATCGATAATGAAAAATGTTGTATGCATATACCTTTGATAATACATCCTCCATCCTTTGGAGAA ]
[+] EMBL CB646671 [TTCGGCGTGCGGCTCACGTCGCCGCCGGAGGTGGCGATGAAGAAGAGCGCGAGCATGAGCTGCATCGCGTCGTCGCTCGGGAGTGGCGGTGGGTCAGGGGGTTCGTCGCCGGCGGGAACGGGAAGGGGAGGAGGAGGAGGGGGAGAGGGCGCGGCCGGGTACGCGTCCGACCACCCCACGCACGCCTCCTGCTCGACGAATGGCCGCGGCGAGCGGAAGAAAGGTACACCTTGGACTGAACAAGAGCATAGAATGTTTCTAATGGGTCTGCAGAAGCTTGGTAAAGGAGACTGGCGTGGGATCTCTCGTAATTTTGTTGTTTCCAGGACACCTGCTCAGGTGGCTAGCCATGCTCACAAGTACTTCATTAGACAGACAAGCTCATCAAGAAGGAATACGAGGTCAAGCTT ]
[-] EMBL CB653113 [ ATTGCCAATATCACATCTTGTGAAACAGAAGGAACCTGAGTTTGCTAGACACCTGTCGGATTTGCAGCTAAGGAAGCATGAGGAATCTGAGTTCACAGAACCTTCACTAGCAGCACTAGACTTGGAGATGAACCATGCTGCACCTTTCAAGACTAAATTTGTTTTGACAATGCCAACATTTTACCCGGCATTAATACCTGTTCCACTAACTCTTTGGCCT CCAAATGTTGCTAATGTGGGTGAATCAGGCACAAATCATGAAATCCTAAAGCCCACTCCAGTGAATGGAAAGGAGGTGATCAATAAGGCTGATGAGGTTGTTGGCATGT CCAAGCTTACCATAGGTGACGGCAGCTCTAACTCCATAGAACCCTCTGCTCTTTCCCTTCAGCTTACTGGACCGACAAATACAAGACAATCAGCTTTTCATGTGAACCCACCAATGGCTGGACCTGACCTAAATAAGAGAAACAACAGCCCAATTCATGCAGTTTGAGAAAGCATGGAAAAGGCCTGCTGGGTCAAATCTTATAGATTATATATTACTTCCCCAATACCATAGAATGTTGCATAAGGTCCTGAGCATGTACTTTTGTAGCAGCTTTTGAGTTGTATCACCATATTATGTTCTTTGATATCGATAATGAAAAATGTTGTATGCATATACCTTTGATAATACATCCTCCATCCTTTGGAGAAAATGGTTTTCAGTT]
[+] EMBL AU091667 [ CTAACTCTTTGGCCTCCCAAATGTTGCTAATGTGGGTGANTCAGGCACAAATCATGAAATCCTAAAGCCCACTCCAGTGAATGGANAGGAGGTGATCAATAAGGCTGATGAGGTTGTTGGCATGTCCCAAGCTTACCATAGGTGACGGCAGCTCTAACTCCATAGAACCCTCTGCTCTTTCCCTTCAGCTTACTGGACCGACAAATACAAGACAATCAGCTTTNCATGTGAACCCACCAATGGCTGGACCTGACCTAAATAAGAGAAACAACAGCCCAATTCATGCAGTTTGAGAAAGCATGGAAAAGGCCTGCTGGGTCAAATCTTATAGATTATATATTACTTCCCCAATACCATAGAATGTTGCATAAGGTCCTGAGCATGTACTTTTGTAGCAGCTTCTGAGTTGTATCACCATATTATGTTCTTTGATATCGATAATGAAAAATGTTGTATGCATATACCTTTGATAAaa ]
consensusID : consensus_11137#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 692 fasta sequence
[AAGCCNCAAGCTCAAATCAATTGCCAATATCACATCTTGTGAAACAGAAGGAACCTGAGTNTGCTAGACACCTGTGGGATTTGCAGCTAAGGAAGCATGAGGAATCTGAGTTCACAGAACCTTCACTAGCAGCACTAGACTTGGAGATGAACCATGCTGCACCTTTCAAGACTAAATTTGTTCTGACAATGCCAACATTCTACCCGGCATTAATACCTGTTCCACTAACTCTTTGGCCTCCAAATGTTGCTAATGTGGGTGAATCAGGCACAAATCATGAAATCCTAAAGCCCACTCCAGTGAATGGAAAGGAGGTGATCAATAAGGCTGATGAGGTTGTTGGCATGTCCAAGCTTACCATAGGTGACGGCAGCTCTAACTCCATAGAACCCTCTGCTCTTTCCCTTCAGCTTACTGGACCGACAAATACAAGACAATCAGCTTTTCATGTGAACCCACCAATGGCTGGACCTGACCTAAATAAGAGAAACAACAGCCCAATTCATGCAGTTTGAGAAAGCATGGAAAAGGCCTGCTGGGTCAAATCTTATAGATTATATATTACTTCCCCAATACCATAGAATGTTGCATAAGGTCCTGAGCATGTACTTTTGTAGCAGCTTTTGAGTTGTATCACCATATTATGTTCTTTGATATCGATAATGAAAAATGTTGTATGCAAAAAAAAAAAA]
[-] EMBL CA759944 [AAGCCNCAAGCTCAAATCAATTGCCAATATCACATCTTGTGAAACAGAAGGAACCTGAGTNTGCTAGACACCTGTGGGATTTGCAGCTAAGGAAGCATGAGGAATCTGAGTTCACAGAACCTTCACTAGCAGCACTAGACTTGGAGATGAACCATGCTGCACCTTTCAAGACTAAATTTGTTCTGACAATGCCAACATTCTACCCGGCATTAATACCTGTTCCACTAACTCTTTGGCCTCCAAATGTTGCTAATGTGGGTGAATCAGGCACAAATCATGAAATCCTAAAGCCCACTCCAGTGAATGGAAAGGAGGTGATCAATAAGGCTGATGAGGTTGTTGGCATGTCCAAGCTTACCATAGGTGACGGCAGCTCTAACTCCATAGAACCCTCTGCTCTTTCCCTTCAGCTTACTGGACCGACAAATACAAGACAATCAGCTTTTCATGTGAACCCACCAATGGCTGGACCTGACCTAAATAAGAGAAACAACAGCCCAATTCATGCAGTTTGAGAAAGCATGGAAAAGGCCTGCTGGGTCAAATCTTATAGATTATATATTACTTCCCCAATACCATAGAATGTTGCATAAGGTCCTGAGCATGTACTTTTGTAGCAGCTTTTGAGTTGTATCACCATATTATGTTCTTTGATATCGATAATGAAAAATGTTGTATGCAAAAAAAAAAAA]
consensusID : consensus_11137#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 274 fasta sequence
[ATGGGCTGAAGGAGTAGAAAAAAGAAACATCAGCCCAATTCATGCAGTTTGAGAAAGCATGGAAAAGGCCTGCTGGGTCAAATTTTATAGA-TTATATATTACTTCCCCAATACCATAGAATGTTGCATAAGGTCCTGAGCATGTACTTTTGTAGCAGCTTTTGAGTTGTATCACCATATTATGTTCTTTGA-AACGAAAAATAAAAAATGTTGTATGCATA-ACCTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACACTGTCTTGCCG]
[-] EMBL CF321256 [ATGGGCTGAAGGAGTAGAAAAAAGAAACATCAGCCCAATTCATGCAGTTTGAGAAAGCATGGAAAAGGCCTGCTGGGTCAAATTTTATAGA TTATATATTACTTCCCCAATACCATAGAATGTTGCATAAGGTCCTGAGCATGTACTTTTGTAGCAGCTTTTGAGTTGTATCACCATATTATGTTCTTTGA AACGAAAAATAAAAAATGTTGTATGCATA ACCTTTAAAAAAAAAAAAAAAAAAAAAAA ]
[+] EMBL CF321255 [ aaCAGCCCAATTCATGCAGTTTGAGAAAGCATGGAAAAGGCCTGCTGGGTCAAATCTTATAGANTTATATATTACTTCCCCAATACCATAGAATGTTGCATAAGGTCCTGAGCATGTACTTTTGTAGCAGCTTCTGAGTTGTATCACCATATTATGTTCTTTGATATCG ATAATGAAAAATGTTGTATGCATATACCTTTGATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACACTGTCTTGCCG]
consensusID : consensus_11137#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 163 fasta sequence
[ACCATATTATGTTCTTTGATATCGATAATGAAAAATGTTGTATGCATATACCTTTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATTTTATAAAAAAAAAAAAAA]
[+] EMBL CF330520 [ACCATATTATGTTCTTTGATATCGATAATGAAAAATGTTGTATGCATATACCTTTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATTTTATAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_11137#0 TTCGGCGTGCGGCTCACGTCGCCGCCGGAGGTGGCGATGAAGAAGAGCGCGAGCATGAGC 60
consensus_11137#1 ------------------------------------------------------------
consensus_11137#2 ------------------------------------------------------------
consensus_11137#3 ------------------------------------------------------------
consensus_11137#0 TGCATCGCGTCGTCGCTCGGGAGTGGCGGTGGGTCAGGGGGTTCGTCGCCGGCGGGAACG 120
consensus_11137#1 ------------------------------------------------------------
consensus_11137#2 ------------------------------------------------------------
consensus_11137#3 ------------------------------------------------------------
consensus_11137#0 GGAAGGGGAGGAGGAGGAGGGGGAGAGGGCGCGGCCGGGTACGCGTCCGACGACCCCACG 180
consensus_11137#1 ------------------------------------------------------------
consensus_11137#2 ------------------------------------------------------------
consensus_11137#3 ------------------------------------------------------------
consensus_11137#0 CACGCCTCCTGCTCGACGAATGGCCGCGGCGAGCGGAAGAAAGGTACACCTTGGACTGAA 240
consensus_11137#1 ------------------------------------------------------------
consensus_11137#2 ------------------------------------------------------------
consensus_11137#3 ------------------------------------------------------------
consensus_11137#0 GAAGAGCATAGAATGTTTCTAATGGGTCTGCAGAAGCTTGGTAAAGGAGACTGGCGTGGG 300
consensus_11137#1 ------------------------------------------------------------
consensus_11137#2 ------------------------------------------------------------
consensus_11137#3 ------------------------------------------------------------
consensus_11137#0 ATCTCTCGTAATTTTGTTGTTTCCAGGACACCAACTCAGGTGGCTAGCCATGCTCAAAAG 360
consensus_11137#1 ------------------------------------------------------------
consensus_11137#2 ------------------------------------------------------------
consensus_11137#3 ------------------------------------------------------------
consensus_11137#0 TACTTCATTAGACAGACAAACTCATCAAGAAGGAAGAGGAGGTCAAGCTTGTTTGACATG 420
consensus_11137#1 ------------------------------------------------------------
consensus_11137#2 ------------------------------------------------------------
consensus_11137#3 ------------------------------------------------------------
consensus_11137#0 GTCCCAGAAATGCCCATGGACGAATCCCCAGTGGTCGTAGAACAGCTTATGCTCCATAGT 480
consensus_11137#1 ------------------------------------------------------------
consensus_11137#2 ------------------------------------------------------------
consensus_11137#3 ------------------------------------------------------------
consensus_11137#0 ACTCAAGACGAAGCCACAAGCTCAAATCAATTGCCAATATCACATCTTGTGAAACAGAAG 540
consensus_11137#1 ----------AAGCCNCAAGCTCAAATCAATTGCCAATATCACATCTTGTGAAACAGAAG 50
consensus_11137#2 ------------------------------------------------------------
consensus_11137#3 ------------------------------------------------------------
consensus_11137#0 GAACCTGAGTTTGCTAGACACCTGTCGGATTTGCAGCTAAGGAAGCATGAGGAATCTGAG 600
consensus_11137#1 GAACCTGAGTNTGCTAGACACCTGTGGGATTTGCAGCTAAGGAAGCATGAGGAATCTGAG 110
consensus_11137#2 ------------------------------------------------------------
consensus_11137#3 ------------------------------------------------------------
consensus_11137#0 TTCACAGAACCTTCACTAGCAGCACTAGACTTGGAGATGAACCATGCTGCACCTTTCAAG 660
consensus_11137#1 TTCACAGAACCTTCACTAGCAGCACTAGACTTGGAGATGAACCATGCTGCACCTTTCAAG 170
consensus_11137#2 ------------------------------------------------------------
consensus_11137#3 ------------------------------------------------------------
consensus_11137#0 ACTAAATTTGTTCTGACAATGCCAACATTCTACCCGGCATTAATACCTGTTCCACTAACT 720
consensus_11137#1 ACTAAATTTGTTCTGACAATGCCAACATTCTACCCGGCATTAATACCTGTTCCACTAACT 230
consensus_11137#2 ------------------------------------------------------------
consensus_11137#3 ------------------------------------------------------------
consensus_11137#0 CTTTGGCCTCCAAATGTTGCTAATGTGGGTGAATCAGGCACAAATCATGAAATCCTAAAG 780
consensus_11137#1 CTTTGGCCTCCAAATGTTGCTAATGTGGGTGAATCAGGCACAAATCATGAAATCCTAAAG 290
consensus_11137#2 ------------------------------------------------------------
consensus_11137#3 ------------------------------------------------------------
consensus_11137#0 CCCACTCCAGTGAATGGAAAGGAGGTGATCAATAAGGCTGATGAGGTTGTTGGCATGTCC 840
consensus_11137#1 CCCACTCCAGTGAATGGAAAGGAGGTGATCAATAAGGCTGATGAGGTTGTTGGCATGTCC 350
consensus_11137#2 ------------------------------------------------------------
consensus_11137#3 ------------------------------------------------------------
consensus_11137#0 AAGCTTACCATAGGTGACGGCAGCTCTAACTCCATAGAACCCTCTGCTCTTTCCCTTCAG 900
consensus_11137#1 AAGCTTACCATAGGTGACGGCAGCTCTAACTCCATAGAACCCTCTGCTCTTTCCCTTCAG 410
consensus_11137#2 ------------------------------------------------------------
consensus_11137#3 ------------------------------------------------------------
consensus_11137#0 CTTACTGGACCGACAAATACAAGACAATCAGCTTTTCATGTGAACCCACCAATGGCTGGA 960
consensus_11137#1 CTTACTGGACCGACAAATACAAGACAATCAGCTTTTCATGTGAACCCACCAATGGCTGGA 470
consensus_11137#2 --------------------------------------------------ATGGGCTGAA 10
consensus_11137#3 ------------------------------------------------------------
consensus_11137#0 CCTGACCTAAATAAGAGAAACAACAGCCCAATTCATGCAGTTTGAGAAAGCATGGAAAAG 1020
consensus_11137#1 CCTGACCTAAATAAGAGAAACAACAGCCCAATTCATGCAGTTTGAGAAAGCATGGAAAAG 530
consensus_11137#2 ---GGAGTAGAAAAAAGAAACATCAGCCCAATTCATGCAGTTTGAGAAAGCATGGAAAAG 67
consensus_11137#3 ------------------------------------------------------------
consensus_11137#0 GCCTGCTGGGTCAAATCTTATAGATTATATATTACTTCCCCAATACCATAGAATGTTGCA 1080
consensus_11137#1 GCCTGCTGGGTCAAATCTTATAGATTATATATTACTTCCCCAATACCATAGAATGTTGCA 590
consensus_11137#2 GCCTGCTGGGTCAAATTTTATAGATTATATATTACTTCCCCAATACCATAGAATGTTGCA 127
consensus_11137#3 -----------------------ACCATATTATG-TTCTTTGATATCG----ATAATGAA 32
* **** * *** *** * ** ** *
consensus_11137#0 TAAGGTCCTGAGCATGTACTTTTGTAGCAGCTTCTGAGTTGTATCACCATATTATGTTCT 1140
consensus_11137#1 TAAGGTCCTGAGCATGTACTTTTGTAGCAGCTTTTGAGTTGTATCACCATATTATGTTCT 650
consensus_11137#2 TAAGGTCCTGAGCATGTACTTTTGTAGCAGCTTTTGAGTTGTATCACCATATTATGTTCT 187
consensus_11137#3 AAATGTTGTATGCATATACCTTTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 92
** ** * **** *** **** * * * * * * * *
consensus_11137#0 TTGATATCGATAATGAAAAATGTTGTATGCATATACCTTTGATAATACATCCTCCATCCT 1200
consensus_11137#1 TTGATATCGATAATGAAAAATGTTGTATGCAAAAAAAAAAAA------------------ 692
consensus_11137#2 TTGAAACGAAAAATAAAAAATGTTGTATGCATAACCTTTAAAAAAAAAAAAAAAAAAAAA 247
consensus_11137#3 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATTTTATAAA 152
* * * ** ***** * * * *
consensus_11137#0 TTGGAGAAAATGGTTTTCAGTT----- 1222
consensus_11137#1 ---------------------------
consensus_11137#2 AAAAAAAAAAAAAACACTGTCTTGCCG 274
consensus_11137#3 AAAAAAAAAAA---------------- 163
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||