These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11139#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1480 fasta sequence [TTGATGGTCTCTGGCTTTGAAAAATATTATCAGATTGCAAGGTGTTTCCGAGATGAAGATCTGCGTGCAGATAGGCAACCAGAGTTTACACAACTTGATATGGAGATTGCATTTACATCAATGGAAGATATGTTGAAGTTGAACGAAGAATTAATGAGACATATTTTCCAAGAGGTTGGTGATATCAAGCTGCCAAATCCTTTTCCAAGGCTAACCTATACGGAGGCAATGAATCGCTATGGAACAGATAGGCCTGACCTTCGTTTTGATTGGCAGCTGAAAGATGTTAGTGATGCATTTTTGGGCAGTAGCTTCAAGATTTTTGCAGATACATTAGAAAACGGGGGTGTCATCAAGGCATTATGTGTTCCTGGTGGTGCCAAAGAATTTTCAAATACTGACCTAAAGAAAGGAACTGTCTACACTGAAGCTTCCAAAGCTGGAGCCAAGGGCCTGCCTTTTCTCAAAGTTATGGACAATGGAGAGCTTGAAGGAATTGGTCCACTCGTGGCAAGTCTGAAACCTGAAAAGAAAGAGCAGTTGTTGAAACATCTAGATGCAAAATCAGGTGATCTTATCCTGTTTGCACTGGGTGAGCAATCAGCGGCTAATCGAATTCTTGGCAGATTAAGATTATTTATTGCTCATAAGCTGGAAGTGATAGATACATCAGCACATTCAATTCTTTGGGTGACGGATTTTCCAATGTTTGAATGGAACAGTGATGAGCAGAGATACGAGGCACTACACCATCCTTTCACTGCACCAAATCCTGAAGATATGAATGATCTACCATCAGCTCGAGCCTTGGCTTATGACATGATTTACAATGGAGTGGAGATTGGAGGAGGCAGTTTGAGGATATACAAAAGTGATGTACAACAAAGGATTTTTGAGATCAT-CGGTATCTCACCCGAGCAGGCAGAGGAAAAATTTGGCTATCTTTTAGAATGTTTTGACATGGGTGCTCCTCCTCATGGAGGAATTGCCTATGGGTTAGATCGTTTGGTGATGCTTTTGGCTGGTGAAAATTCAATCCGGGATGTGATTGCTTTCCCAAAGACTACAACTGCTCAATGTTCACTCACCAAAGCGCCATCTCCTGTAGATCCACAGCAATTGAAGGATCTTGGCTTCCGTACGTGAAGTGAGTGCACTGCTTGTAACAAGGTTTGAGTTATATAGGAACATCCATTGTTTACACCGGGCACCCAACCTGTCACA--------GCACATTCACCTTTTGCGAATGTGCTTCTGCTCTTGAGAAATTTTGACCATGGATAGGCTGGTTGTCCATCTCATGAATCCAATAAAAAGTTTAAAGCAGATAAATTTCGTCGTGACTATTGTCGGATAGCTTGTCAAGTGCCCAAGCTATTTGGCTGTTGAGTTACACTGATAAACAGTAGAAAAAATTGGATGAGGCAATTAAAAATAACTTGAGTAAAAAAAAGTTGTAGGTGCTGTTCGTTGTTTATAAAGC] [+] EMBL AK059454 [TTGATGGTCTCTGGCTTTGAAAAATATTATCAGATTGCAAGGTGTTTCCGAGATGAAGATCTGCGTGCAGATAGGCAACCAGAGTTTACACAACTTGATATGGAGATTGCATTTACATCAATGGAAGATATGTTGAAGTTGAACGAAGAATTAATGAGACATATTTTCCAAGAGGTTGGTGATATCAAGCTGCCAAATCCTTTTCCAAGGCTAACCTATACGGAGGCAATGAATCGCTATGGAACAGATAGGCCTGACCTTCGTTTTGATTGGCAGCTGAAAGATGTTAGTGATGCATTTTTGGGCAGTAGCTTCAAGATTTTTGCAGATACATTAGAAAACGGGGGTGTCATCAAGGCATTATGTGTTCCTGGTGGTGCCAAAGAATTTTCAAATACTGACCTAAAGAAAGGAACTGTCTACACTGAAGCTTCCAAAGCTGGAGCCAAGGGCCTGCCTTTTCTCAAAGTTATGGACAATGGAGAGCTTGAAGGAATTGGTCCACTCGTGGCAAGTCTGAAACCTGAAAAGAAAGAGCAGTTGTTGAAACATCTAGATGCAAAATCAGGTGATCTTATCCTGTTTGCACTGGGTGAGCAATCAGCGGCTAATCGAATTCTTGGCAGATTAAGATTATTTATTGCTCATAAGCTGGAAGTGATAGATACATCAGCACATTCAATTCTTTGGGTGACGGATTTTCCAATGTTTGAATGGAACAGTGATGAGCAGAGATACGAGGCACTACACCATCCTTTCACTGCACCAAATCCTGAAGATATGAATGATCTACCATCAGCTCGAGCCTTGGCTTATGACATGATTTACAATGGAGTGGAGATTGGAGGAGGCAGTTTGAGGATATACAAAAGTGATGTACAACAAAGGATTTTTGAGATCAT CGGTATCTCACCCGAGCAGGCAGAGGAAAAATTTGGCTATCTTTTAGAATGTTTTGACATGGGTGCTCCTCCTCATGGAGGAATTGCCTATGGGTTAGATCGTTTGGTGATGCTTTTGGCTGGTGAAAATTCAATCCGGGATGTGATTGCTTTCCCAAAGACTACAACTGCTCAATGTTCACTCACCAAAGCGCCATCTCCTGTAGATCCACAGCAATTGAAGGATCTTGGCTTCCGTACGTGAAGTGAGTGCACTGCTTGTAACAAGGTTTGAGTTATATAGGAACATCCATTGTCTACACCGGGCACCCAACCTGTCACA GCACATTCACCTTTTGCGAATGTGCTTCTGCTCTTGAGAAATTTTGACCATGGATAGGCTGGTTGTCCATCTCATGAATCCAATAAAA ] [-] EMBL CB643712 [ GTTGAAACATCTAGATGCAAAATCAGGTGATCTTATCCTGTTTGCACTGGGTGAGCAATCAGCGGCTAATCGAATTCTTGGCAGATTAAGATTATTTATTGCTCATAAGCTGGAAGTGATAGATACATCAGCACATTCAATTCTTTGGGTGACGGATTTTCCAATGTTTGAATGGAACAGTGATGAGCAGAGATACGAGGCACTACACCATCCTTTCACTGCACCAAATCCTGAAGATATGAATGATCTACCATCAGCTCGAGCCTTGGCTTATGACATGATTTACAATGGAGTGGAGATTGGAGGAGGCAGTTTGAGGATATACAAAAGTGATGTACAACAAAGGATTTTTGAGATCAT CGGTATCTCACCCGAGCAGGCAGAGGAAAAATTTGGCTATCTTTTAGAATGTTTTGACATGGGTGCTCCTCCTCATGGAGGAATTGCCTATGGGTTAGATCGTTTGGTGATGCTTTTGGCTGGTGAAAATTCAATCCGGGATGTGATTGCTTTCCCAAAGACTACAACTGCTCAATGTTCACTCACCAAAGCGCCATCTCCTGTAGATCCACAGCAATTGAAGGATCTTGGCTTCCGTACGTGAAGTGAGTGCACTGCTTGTAACAAGGTTTGAGTTATATAGGAACATCCATTGTCTACACCGGGCACCCAACCTGTCACA GCACATTCACCTTTTGGGAATGTGCTTCTGCTCTTGAGAAATTTTGACCATGGATAGGCTGGTTGTCCATCGCATGAATCCAATAAAAAGTTTAAAGCAAAAAAAaaaaaag ] [-] EMBL CB629024 [ ATACATCAGCACATTCAATTCTTTGGGTGACGGATTTTCCAATGTTTGAATGGAACAGTGATGAGCAGAGATACGAGGCACTACACCATCCTTTCACTGCACCAAATCCTGAAGATATGAATGATCTACCATCAGCTCGAGCCTTGGCTTATGACATGATTTACAATGGAGTGGAGATTGGAGGAGGCAGTTTGAGGATATACAAAAGTGATGTACAACAAAGGATTTTTGAGATCAT CGGTATCTCACCCGAGCAGGCAGAGGAAAAATTTGGCTATCTTTTAGAATGTTTTGACATGGGTGCTCCTCCTCATGGAGGAATTGCCTATGGGTTAGATCGTTTGGTGATGCTTTTGGCTGGTGAAAATTCAATCCGGGATGTGATTGCTTTCCCAAAGACTACAACTGCTCAATGTTCACTCACCAAAGCGCCATCTCCTGTGGATCCACAGCAATTGAAGGATCTTGGCTTCCGTACGTGAAGTGAGTGCACTGTTTGTAACAAGGTTTGAGTTATATAGGAACATCCGTTGTTTACACCGGGTACCCAACCTGTCGCAGGCTCGCTGCACATTCACCTTTTGCGAATGTGCTTCTGCTCTTGAGAAATTTTGACCATGGATAGGCTGGTTGTCCATCTC T TC AGAAAGTTTAAAGCAGATAAATTTCGTCGTGACTATTGTCGGATAGCTTGTCAAGTGCCCAAGCTATTTGGCTGTTGAGTTACACTGATAAACAGTAGAAAAAATTGGATGAGGCAATTAAAAATAACTTGAGTAAAAAAAAGTTGTAGGTGCTGTTCGTTGTTTATAAAGC] [-] EMBL CB639010 [ CAATTCTTTGGGTGACGGATTTTCCAATGTTTGAATGGAACAGTGATGAGCAGAGATACGAGGCACTACACCATCCTTTCACTGCACCAAATCCTGAAGATATGAATGATCTACCATCAGCTCGAGCCTTGGCTTATGACATGATTTACAATGGAGTGGAGATTGGAGGAGGCAGTTTGAGGATATACAAAAGTGATGTACAACAAAGGATTTTTGAGATCAT CGGTATCTCACCCGAGCAGGCAGAGGAAAAATTTGGCTATCTTTTAGAATGTTTTGACATGGGTGCTCCTCCTCATGGAGGAATTGCCTATGGGTTAGATCGTTTGGTGATGCTTTTGGCTGGTGAAAATTCAATCCGGGATGTGATTGCTTTCCCAAAGACTACAACTGCTCAATGTTCACTCACCAAAGCGCCATCTCCTGTAGATCCACAGCAATTGAAGGATCTTGGCTTCCGTACGTGAAGTGAGTGCACTGCTTGTAACAAGGTTTGAGTTATATAGGAACATCCATTGTTTACACCGGGCACCCAACCTGTCACA GCACATTCACCTTTTGCGAATGTGCTTCTGCTCTTGAGAAATTTTGACCATGGATAGGCTGGTTGTCCATCTCATGAATCCAATAAAAA ] [-] EMBL CA762914 [ cCCCAATCCTGAAG TTTGAATGATCTACCATCAGCTCGAGCCTGGGCTTATGCCATGATTTCCAATGGAGTGGAGATTGGAGGAGCCAGTTTGAGGATATACAAAAGTGATGTGCACCAAAGGATTTTTGAGAT ATCCGGTATCTCACCCGAGCAGGCAGAGGAAAAATTTGGCTATCTTTTAGAATGTTTTGACATGGGTGCTCCTCCTCATGGAGGAATTGCCTATGGGTTAGATCGTTTGGTGATGCTTTTGGCTGGTGAAAATTCAATCCGGGATGTGATTGCTTTCCCAAAGACTACAACTGCTCAATGTTCACTCACCAAAGCGCCATCTCCTGTGGATCCCCAGCAATTGAAGGATCTTGGCTTCCGTACGTGAAGTGAGTGCACTGTTTGTAACAAGGTTTGAGTTATATAGGAACATCCGTTGTTTACACCGGGTACCCAACCTGTCGCAGGCTCGCTGCACATTCACCTTTTGCGAATGTGCTTCTGCTCTTGAGAAATTTTGACCATGGATAGGCTGGTTGTCCATCTC T TC AGAAAGTTTAAAGCAGATAAATTTTGTCGTGACTATTGTTGGATAGCTTGTCAAGTGCCCAAGCTATTTGGCTGTTGAGTTACCCTGATAAACAGTAGAAAAAATTGGATGAGGCAATTAAAAAAAAaaaaaa ] [-] EMBL CB639067 [ GATCTACCATCAGCTCGAGCCTTGGCTTATGACATGATTTACAATGGAGTGGAGATTGGAGGAGGCAGTTTGAGGATATACAAAAGTGATGTACAACAAAGGATTTTTGAGATCAT CGGTATCTCACCCGAGCAGGCAGAGGAAAAATTTGGCTATCTTTTAGAATGTTTTGACATGGGTGCTCCTCCTCATGGAGGAATTGCCTATGGGTTAGATCGTTTGGTGATGCTTTTGGCTGGTGAAAATTCAATCCGGGATGTGATTGCTTTCCCAAAGACTACAACTGCTCAATGTTCACTCACCAAAGCGCCATCTCCTGTAGATCCACAGC ] [-] EMBL BE230448 [ GTTTGAGTTATATAGGAACATCCATTGTTTACACCGGGTACCCAACCTGTCGCAGGCTCGCTGCACATTCACCTTTTGCGAATGTGCTTCTGCTCTTGAGAAATTTTGACCATGGATAGGCTGGTTGTCCATCTC T TC AGAAAGTTTAAAGCAGATAAATTTCGTCGTGACTATTGTCGGATAGCTTGTCAAGTGCCCAAGCTATTTGGCTGTTGAGTTACACTGATAAACAGTAGAAAAAATTGGATGAGGCAATTAAAAATAACTTGAGTAAAAAAAAGTTGTATGTGCTGTTCGT ] consensusID : consensus_11139#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 156 fasta sequence [ATCAATCTCTTCGTGACTATTGCCGGATAGCTTGTCAAGTGCCCAAGCTATTTGGCTGTTGAGTTACGCTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCCTGTCTTGCCGTTACGTATCTTTT] [+] EMBL CF330459 [ATCAATCTCTTCGTGACTATTGCCGGATAGCTTGTCAAGTGCCCAAGCTATTTGGCTGTTGAGTTACGCTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCCTGTCTTGCCGTTACGTATCTTTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_11139#0 TTGATGGTCTCTGGCTTTGAAAAATATTATCAGATTGCAAGGTGTTTCCGAGATGAAGAT 60 consensus_11139#1 ------------------------------------------------------------ consensus_11139#0 CTGCGTGCAGATAGGCAACCAGAGTTTACACAACTTGATATGGAGATTGCATTTACATCA 120 consensus_11139#1 ------------------------------------------------------------ consensus_11139#0 ATGGAAGATATGTTGAAGTTGAACGAAGAATTAATGAGACATATTTTCCAAGAGGTTGGT 180 consensus_11139#1 ------------------------------------------------------------ consensus_11139#0 GATATCAAGCTGCCAAATCCTTTTCCAAGGCTAACCTATACGGAGGCAATGAATCGCTAT 240 consensus_11139#1 ------------------------------------------------------------ consensus_11139#0 GGAACAGATAGGCCTGACCTTCGTTTTGATTGGCAGCTGAAAGATGTTAGTGATGCATTT 300 consensus_11139#1 ------------------------------------------------------------ consensus_11139#0 TTGGGCAGTAGCTTCAAGATTTTTGCAGATACATTAGAAAACGGGGGTGTCATCAAGGCA 360 consensus_11139#1 ------------------------------------------------------------ consensus_11139#0 TTATGTGTTCCTGGTGGTGCCAAAGAATTTTCAAATACTGACCTAAAGAAAGGAACTGTC 420 consensus_11139#1 ------------------------------------------------------------ consensus_11139#0 TACACTGAAGCTTCCAAAGCTGGAGCCAAGGGCCTGCCTTTTCTCAAAGTTATGGACAAT 480 consensus_11139#1 ------------------------------------------------------------ consensus_11139#0 GGAGAGCTTGAAGGAATTGGTCCACTCGTGGCAAGTCTGAAACCTGAAAAGAAAGAGCAG 540 consensus_11139#1 ------------------------------------------------------------ consensus_11139#0 TTGTTGAAACATCTAGATGCAAAATCAGGTGATCTTATCCTGTTTGCACTGGGTGAGCAA 600 consensus_11139#1 ------------------------------------------------------------ consensus_11139#0 TCAGCGGCTAATCGAATTCTTGGCAGATTAAGATTATTTATTGCTCATAAGCTGGAAGTG 660 consensus_11139#1 ------------------------------------------------------------ consensus_11139#0 ATAGATACATCAGCACATTCAATTCTTTGGGTGACGGATTTTCCAATGTTTGAATGGAAC 720 consensus_11139#1 ------------------------------------------------------------ consensus_11139#0 AGTGATGAGCAGAGATACGAGGCACTACACCATCCTTTCACTGCACCAAATCCTGAAGAT 780 consensus_11139#1 ------------------------------------------------------------ consensus_11139#0 ATGAATGATCTACCATCAGCTCGAGCCTTGGCTTATGACATGATTTACAATGGAGTGGAG 840 consensus_11139#1 ------------------------------------------------------------ consensus_11139#0 ATTGGAGGAGGCAGTTTGAGGATATACAAAAGTGATGTACAACAAAGGATTTTTGAGATC 900 consensus_11139#1 ------------------------------------------------------------ consensus_11139#0 ATCGGTATCTCACCCGAGCAGGCAGAGGAAAAATTTGGCTATCTTTTAGAATGTTTTGAC 960 consensus_11139#1 ------------------------------------------------------------ consensus_11139#0 ATGGGTGCTCCTCCTCATGGAGGAATTGCCTATGGGTTAGATCGTTTGGTGATGCTTTTG 1020 consensus_11139#1 ------------------------------------------------------------ consensus_11139#0 GCTGGTGAAAATTCAATCCGGGATGTGATTGCTTTCCCAAAGACTACAACTGCTCAATGT 1080 consensus_11139#1 ------------------------------------------------------------ consensus_11139#0 TCACTCACCAAAGCGCCATCTCCTGTAGATCCACAGCAATTGAAGGATCTTGGCTTCCGT 1140 consensus_11139#1 ------------------------------------------------------------ consensus_11139#0 ACGTGAAGTGAGTGCACTGCTTGTAACAAGGTTTGAGTTATATAGGAACATCCATTGTTT 1200 consensus_11139#1 ------------------------------------------------------------ consensus_11139#0 ACACCGGGCACCCAACCTGTCACAGCACATTCACCTTTTGCGAATGTGCTTCTGCTCTTG 1260 consensus_11139#1 ------------------------------------------------------------ consensus_11139#0 AGAAATTTTGACCATGGATAGGCTGGTTGTCCATCTCATGAATCCAATAAAAAGTTTAAA 1320 consensus_11139#1 ------------------------------------------------------------ consensus_11139#0 GCAGATAAATTTCGTCGTGACTATTGTCGGATAGCTTGTCAAGTGCCCAAGCTATTTGGC 1380 consensus_11139#1 ----ATCAATCTCTTCGTGACTATTGCCGGATAGCTTGTCAAGTGCCCAAGCTATTTGGC 56 ** *** ** ************ ********************************* consensus_11139#0 TGTTGAGTTACACTGATAAACAGTAGAAAAAATTGGATGAGGCAATTAAAAATAACTTGA 1440 consensus_11139#1 TGTTGAGTTACGCTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 116 *********** **** *** * * ****** * * ** ***** ** * consensus_11139#0 GTAAAAAAAAGTTGTAGGTGCTGTTCGTTGTTTATAAAGC 1480 consensus_11139#1 AAAAAAAAAAAAACCCCTGTCTTGCCGTTACGTATCTTTT 156 ******** ** **** *** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||