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Oryza sativa
cluster # 11144 cluster # 11144       Sequences # 8       consensus # 4


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_11144#0 length = 2156 sequences # 4  
consensus_11144#1 length = 716 sequences # 2  
consensus_11144#2 length = 605 sequences # 1  
consensus_11144#3 length = 141 sequences # 1  

consensusID : consensus_11144#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 2156
fasta sequence
                              [ATCACCAGCTGCCACTCTCAAGAACCTGACTTTGGATCGCTATCCCTTTTGCTTCTTATTAGTGCTCAGGGAAAGAAAGCTATAGCAGTAGCTAAATAAGCCAGAGAGAGGCTAAGAGAGAGAGAGGTGAGGGGAGAGAAGAAATCCTCGCAGAATTCGAGCAAGAACCGAGGGAGATCGATCGCCTCTTGTCCTCGTTCCGAGGCAGAGATCGACCTGAAGTGAGCTGAGCTGCGGCAAGGAGGAGGAGGAGGAGGAGGAGGAGAAGGAGATTGGAGATGATGATGAGGGATGTGTGCATGGAGGTGCTGCCTCCGATGGACCACTACGCGTCGAGGGGGAACTGGTTCATGGCGCGCAAGTGGTCGCCGGAGGAGAACAAGCAGTTCGAGCGGGCGCTCGCCGGGCTGGACCTGCGGTGCCCGGACTGGGACCGGGTGGCGCGCGCCATCCCGGGCAGGTCGGCGCTCGAGGTCATGAACCACTTCAGGGACCTCGAGCTCGACGTCCAGCAGATCGAGAATGGCATGGTGCCCTTCCCGGTCTACGGCGCCGCCGCCGCCGGCGGCGCGTTCACACTGCAGTGGGATGGCGCCCATGGCGTCGGGGACTTCAGGAACGCGTACCGGTTCGGCGGCGGCGGCGGCGGGAAGCGGCACTTCGGCCGTACGCCGGAGCAGGAGAGGAAGAAAGGCGTGCCATGGACGGAGGAGGAGCACAAGTTGTTCCTCTTAGGACTGAAGAAATATGGGAAAGGGGATTGGAGGAACATATCCCGCAATTTCGTGCAGACGAGGACGCCGACGCAGGTTGCCAGCCATGCGCAGAAGTATTTCATCAGGCTCAACTCCGGTGGCAAGGACAAGAGGAGATCCAGCATCCATGACATTACCACGGTTAACCTGACGGATGACCGGCCTCCCTCGCCATCACAGTCCTCCTTGATCAGCAATCAGTCCAACACATCAACTCTGACCGCAGCGGTTGCCCCCTTCTCATCGACGGCCGATGTCAAGCCACAGAATGCCGCGAATGCGTCCTTCAATTCGCCAAGCCGGACACTT-GGGATGGC-GGGTTACGGGA-TGGGATTGCAAGATCAAGGA-TTGCAGTG-TGGTGGTCCTCTACATGATCAGTTGGCCGCGAGCCGAAGCATATTGTTTTAGATGAAACCAATCCAGGCAGCACCATGGATCAGATGTCTAGTGTAATATTGCCCTGCTTGTAGCTTCATCACTACCTGTATTGAAGTAATTAATTATGGGGAATTTTTCGGAACATAACAGAGGGGGTGTGGAGGGATCTTTGTGCCATGTTGGTGACTGATAACCTGTGATCCATAATTGTTGGCAATACTGAGAATGTAACGAAACGAACGTCAAGAACTTGATGCCGGTGGTATTTTCAGACAGTGATTGCTGCTAGTGCTGAACACTGATCATGCATGAAGTGGACTTTGTATTCAATCATGGATCCAGCTTTTGTGAGGTGGATGAGGAGAATTCTATTCACTATGTTCTTCTGGTCAGTGATGCACTGAGAAACACCGGTTGCCATCTGATTGAGGGGTTTCAGATCATGCTGTACTTCACACATACTTATCCACAGTTCTATCAATTTGCTCATTGGTGCTCCCCCCATTTGATGTTTGCATAGAATTTATTTGGATAAACGGAAAATAAGTTTGCTCTGAGTCATTCAGCATTATTACTACTTTCAGTTGCTCATCTAGTCAACTTTTCTTGTTTGTAGCTTCATTTTTATAATAAAATAATAACTTCTTTTTTTTAATTCTGTTGCTTGACCTTTGGTTGTTTGTGTGCAATTAAGTCCTATACTGTATTCTTCTGTGGCTCTATTGATGATGCTACTTCCACCAAAAATGAGATTGGTAATGAGTCAGAGTTGCACTAACTTGGCATCTCATGCTTTCTCTGCCCCCTTTTCCATCAACTTTATAATTCTTTTTTCCCCCTTCTTTTTGGCCCTGTTATTATTTCCCTCCTTGAGAAAGGCATCTCAGATATGAGACAGATTTTTGTGACAACAGTAAAGAATAGATCAGGGAGCAGCATTGAAAATGCCCAAATGTTGCCTACTCCTTCCTTCCCAAATGTAGTTATTTTTGGAGTTCAAATTTGTGGTAAAATGTAATTATT]

[+] EMBL AK067964             [ATCACCAGCTGCCACTCTCAAGAACCTGACTTTGGATCGCTATCCCTTTTGCTTCTTATTAGTGCTCAGGGAAAGAAAGCTATAGCAGTAGCTAAATAAGCCAGAGAGAGGCTAAGAGAGAGAGAGGTGAGGGGAGAGAAGAAATCCTCGCAGAATTCGAGCAAGAACCGAGGGAGATCGATCGCCTCTTGTCCTCGTTCCGAGGCAGAGATCGACCTGAAGTGAGCTGAGCTGCGGCAAGGAGGAGGAGGAGGAGGAGGAGGAGAAGGAGATTGGAGATGATGATGAGGGATGTGTGCATGGAGGTGCTGCCTCCGATGGACCACTACGCGTCGAGGGGGAACTGGTTCATGGCGCGCAAGTGGTCGCCGGAGGAGAACAAGCAGTTCGAGCGGGCGCTCGCCGGGCTGGACCTGCGGTGCCCGGACTGGGACCGGGTGGCGCGCGCCATCCCGGGCAGGTCGGCGCTCGAGGTCATGAACCACTTCAGGGACCTCGAGCTCGACGTCCAGCAGATCGAGAATGGCATGGTGCCCTTCCCGGTCTACGGCGCCGCCGCCGCCGGCGGCGCGTTCACACTGCAGTGGGATGGCGCCCATGGCGTCGGGGACTTCAGGAACGCGTACCGGTTCGGCGGCGGCGGCGGCGGGAAGCGGCACTTCGGCCGTACGCCGGAGCAGGAGAGGAAGAAAGGCGTGCCATGGACGGAGGAGGAGCACAAGTTGTTCCTCTTAGGACTGAAGAAATATGGGAAAGGGGATTGGAGGAACATATCCCGCAATTTCGTGCAGACGAGGACGCCGACGCAGGTTGCCAGCCATGCGCAGAAGTATTTCATCAGGCTCAACTCCGGTGGCAAGGACAAGAGGAGATCCAGCATCCATGACATTACCACGGTTAACCTGACGGATGACCGGCCTCCCTCGCCATCACAGTCCTCCTTGATCAGCAATCAGTCCAACACATCAACTCTGACCGCAGCGGTTGCCCCCTTCTCATCGACGGCCGATGTCAAGCCACAGAATGCCGCGAATGCGTCCTTCAATTCGCCAAGCCGGACACTT GGGATGGC GGGTTACGGGA TGGGATTGCAAGATCAAGGA TTGCAGTG TGGTGGTCCTCTACATGATCAGTTGGCCGCGAGCCGAAGCATATTGTTTTAGATGAAACCAATCCAGGCAGCACCATGGATCAGATGTCTAGTGTAATATTGCCCTGCTTGTAGCTTCATCACTACCTGTATTGAAGTAATTAATTATGGGGAATTTTTCGGAACATAACAGAGGGGGTGTGGAGGGATCTTTGTGCCATGTTGGTGACTGATAACCTGTGATCCATAATTGTTGGCAATACTGAGAATGTAACGAAACGAACGTCAAGAACTTGATGCCGGTGGTATTTTCAGACAGTGATTGCTGCTAGTGCTGAACACTGATCATGCATGAAGTGGACTTTGTATTCAATCATGGATCCAGCTTTTGTGAGGTGGATGAGGAGAATTCTATTCACTATGTTCTTCTGGTCAGTGATGCACTGAGAAACACCGGTTGCCATCTGATTGAGGGGTTTCAGATCATGCTGTACTTCACACATACTTATCCACAGTTCTATCAATTTGCTCATTGGTGCTCCCCCCATTTGATGTTTGCATAGAATTTATTTGGATAAACGGAAAATAAGTTTGCTCTGAGTCATTCAGCATTATTACTACTTTCAGTTGCTCATCTAGTCAACTTTTCTTGTTTGTAGCTTCATTTTTATAATAAAATAATAACT                                                                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL AU108180             [                                                                                                                                                                                                                                                                                                      TGTGCATGGAGGTGCTGCCTCCGATGGACCACTACGCGTCGAGGGGGAACTGGTTCATGGCGCGCAAGTGGTCGCCGGAGGAGAACAAGCAGTTCGAGCGGGCGCTCGCCGGGCTGGACCTGCGGTGCCCGGACTGGGACCGGGTGGCGCGCGCCATCCCGGGCAGGTCGGCGCTCGAGGTCATGAACCACTTCAGGGACCTCGAGCTCGACGTCCAGCAGATCGAGAATGGCATGGTGCCCTTCCCGGTCTACGGCGCCGCCGCCGCCGGCGGCGCGTTCACACTGCAGTGGGATGGCGCCCATGGCGTCGGGGACTTCAGGAACGCGTACCGGTTCGGCGGCGGCGGCGGCGGGAAGCGGCACTTCGGCCGTACGCCGGAGCAGGAGAGGAAGAAAGGCGTGCCATGGACGGAGGAGGAGCACAAGTTGTTCCTCTTAGGACTGAAAAAAaaaa                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL OS1321769            [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        TGCCATGGACGGAGGAGGAGCACAAGTTGTTCCTCTTAGGACTGAAGAAATATGGGAAAGGGGATTGGAGGAACATATCCCGCAATTTCGTGCAGACGAGGACGCCGACGCAGGTTGCCAGCCATGCGCAGAAGTATTTCATCAGGCTCAACTNCGGTGGCAAGGACAAGAGGAGATCCAGCATCCATGACATTACCACGGTTAACCTGACGGATGACCGGCCTCCCTCGCCATCACAGTCCTCCTTGATCAGCAATCAGTCCAACACATCAACTCTGACCGCAGCGGTTGCCCCCTTCTCATCGACGGCCGATGTCAAGNCACAGAATGCCGCGAATGGNTCCTTCAATTCGCCAAGCCGGACACTTGGGGATGGCGGGGTTACGGGATTGGGATTGNAAGATCAAGGATTTGCAGTGTTGGTGGTCCTCTACAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[-] EMBL CB682386             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            AACGAACGTCAAGAACTTGATGCCGGTGGTATTTTCAGACAGTGATTGCTGCTAGTGCTGAACACTGATCATGCATGAAGTGGACTTTGTATTCAATCATGGATCCAGCTTTTGTGAGGTGGATGAGGAGAATTCTATTCACTATGTTCTTCTGGTCAGTGATGCACTGAGAAACACCGGTTGCCATCTGATTGAGGGGTTTCAGATCATGCTGTACTTCACACATACTTATCCACAGTTCTATCAATTTGCTCATTGGTGCTCCCCCCATTTGATGTTTGCATAGAATTTATTTGGATAAACGGAAAATAAGTTTGCTCTGAGTCATTCAGCATTATTACTACTTTCAGTTGCTCATCTAGTCAACTTTTCTTGTTTGTAGCTTCATTTTTATAATAAAATAATAACTTCTTTTTTTTAATTCTGTTGCTTGACCTTTGGTTGTTTGTGTGCAATTAAGTCCTATACTGTATTCTTCTGTGGCTCTATTGATGATGCTACTTCCACCAAAAATGAGATTGGTAATGAGTCAGAGTTGCACTAACTTGGCATCTCATGCTTTCTCTGCCCCCTTTTCCATCAACTTTATAATTCTTTTTTCCCCCTTCTTTTTGGCCCTGTTATTATTTCCCTCCTTGAGAAAGGCATCTCAGATATGAGACAGATTTTTGTGACAACAGTAAAGAATAGATCAGGGAGCAGCATTGAAAATGCCCAAATGTTGCCTACTCCTTCCTTCCCAAATGTAGTTATTTTTGGAGTTCAAATTTGTGGTAAAATGTAATTATT]


>consensus_11144#0 ATCACCAGCTGCCACTCTCAAGAACCTGACTTTGGATCGCTATCCCTTTTGCTTCTTATT AGTGCTCAGGGAAAGAAAGCTATAGCAGTAGCTAAATAAGCCAGAGAGAGGCTAAGAGAG AGAGAGGTGAGGGGAGAGAAGAAATCCTCGCAGAATTCGAGCAAGAACCGAGGGAGATCG ATCGCCTCTTGTCCTCGTTCCGAGGCAGAGATCGACCTGAAGTGAGCTGAGCTGCGGCAA GGAGGAGGAGGAGGAGGAGGAGGAGAAGGAGATTGGAGATGATGATGAGGGATGTGTGCA TGGAGGTGCTGCCTCCGATGGACCACTACGCGTCGAGGGGGAACTGGTTCATGGCGCGCA AGTGGTCGCCGGAGGAGAACAAGCAGTTCGAGCGGGCGCTCGCCGGGCTGGACCTGCGGT GCCCGGACTGGGACCGGGTGGCGCGCGCCATCCCGGGCAGGTCGGCGCTCGAGGTCATGA ACCACTTCAGGGACCTCGAGCTCGACGTCCAGCAGATCGAGAATGGCATGGTGCCCTTCC CGGTCTACGGCGCCGCCGCCGCCGGCGGCGCGTTCACACTGCAGTGGGATGGCGCCCATG GCGTCGGGGACTTCAGGAACGCGTACCGGTTCGGCGGCGGCGGCGGCGGGAAGCGGCACT TCGGCCGTACGCCGGAGCAGGAGAGGAAGAAAGGCGTGCCATGGACGGAGGAGGAGCACA AGTTGTTCCTCTTAGGACTGAAGAAATATGGGAAAGGGGATTGGAGGAACATATCCCGCA ATTTCGTGCAGACGAGGACGCCGACGCAGGTTGCCAGCCATGCGCAGAAGTATTTCATCA GGCTCAACTCCGGTGGCAAGGACAAGAGGAGATCCAGCATCCATGACATTACCACGGTTA ACCTGACGGATGACCGGCCTCCCTCGCCATCACAGTCCTCCTTGATCAGCAATCAGTCCA ACACATCAACTCTGACCGCAGCGGTTGCCCCCTTCTCATCGACGGCCGATGTCAAGCCAC AGAATGCCGCGAATGCGTCCTTCAATTCGCCAAGCCGGACACTTGGGATGGCGGGTTACG GGATGGGATTGCAAGATCAAGGATTGCAGTGTGGTGGTCCTCTACATGATCAGTTGGCCG CGAGCCGAAGCATATTGTTTTAGATGAAACCAATCCAGGCAGCACCATGGATCAGATGTC TAGTGTAATATTGCCCTGCTTGTAGCTTCATCACTACCTGTATTGAAGTAATTAATTATG GGGAATTTTTCGGAACATAACAGAGGGGGTGTGGAGGGATCTTTGTGCCATGTTGGTGAC TGATAACCTGTGATCCATAATTGTTGGCAATACTGAGAATGTAACGAAACGAACGTCAAG AACTTGATGCCGGTGGTATTTTCAGACAGTGATTGCTGCTAGTGCTGAACACTGATCATG CATGAAGTGGACTTTGTATTCAATCATGGATCCAGCTTTTGTGAGGTGGATGAGGAGAAT TCTATTCACTATGTTCTTCTGGTCAGTGATGCACTGAGAAACACCGGTTGCCATCTGATT GAGGGGTTTCAGATCATGCTGTACTTCACACATACTTATCCACAGTTCTATCAATTTGCT CATTGGTGCTCCCCCCATTTGATGTTTGCATAGAATTTATTTGGATAAACGGAAAATAAG TTTGCTCTGAGTCATTCAGCATTATTACTACTTTCAGTTGCTCATCTAGTCAACTTTTCT TGTTTGTAGCTTCATTTTTATAATAAAATAATAACTTCTTTTTTTTAATTCTGTTGCTTG ACCTTTGGTTGTTTGTGTGCAATTAAGTCCTATACTGTATTCTTCTGTGGCTCTATTGAT GATGCTACTTCCACCAAAAATGAGATTGGTAATGAGTCAGAGTTGCACTAACTTGGCATC TCATGCTTTCTCTGCCCCCTTTTCCATCAACTTTATAATTCTTTTTTCCCCCTTCTTTTT GGCCCTGTTATTATTTCCCTCCTTGAGAAAGGCATCTCAGATATGAGACAGATTTTTGTG ACAACAGTAAAGAATAGATCAGGGAGCAGCATTGAAAATGCCCAAATGTTGCCTACTCCT TCCTTCCCAAATGTAGTTATTTTTGGAGTTCAAATTTGTGGTAAAATGTAATTATT



consensusID : consensus_11144#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 716
fasta sequence
                              [GCAAGCTTCGAGGGAGATCGATCGCCTCTTGTCCTCGGTCCGAGGCAGAGATCGACCTGAAGTGAGCTGAGCTGCGGCAAGGAGGAGGAGGAGGAGGAGGAGGAGAAGGAGATTGGAGATGATGATGAGGGATGTGTGCATGGAGGTGCTGCCTCCGATGGACCACTACGCGTCGAGGGGGAACTGGTTCATGGCGCGCAAGTGGTCGCCGGAGGAGAACAAGCAGTTCGAGCGGGCGCTCGCCGGGCTGGACCTGCGGTGCCCGGACTGGGACCGGGTGGCGCGCGCCATCCCGGGCA-GGTCGGCGCTCGAGGTCATGAACCACTTCAGGGACCTCGAGCTCGACGTCCAGCAGATCGAGAATGGCATGGTGCCCTTCCCGGTCTACGGCGCCGCCGGAAAAGTTGACTAGATGAGCAACTGAAAGTAGTAATAATGCTGAATGACTCAGAGCAAACTTATTTTCCGTTTATCCAAATAAATTCTATGCAAACATCAAATGGGGGGAGCACCAATGAGCAAATTGATAGAACTGTGGATAAGTATGTGTGAAGTACAGCATGATCTGAAACCCCTCAATCAGATGGCAACCGGTGTTTCTCAGTGCATCACTGACCAGAAGAACATAGTGAATAGAATTCTCCTCATCCACCTCACAAAAGCTGGATCCATGATTGAATACAAAGTCCACTTCATGCATGATCAGTGTTCAGCAC]

[+] EMBL CB682385             [GCAAGCTTCGAGGGAGATCGATCGCCTCTTGTCCTCGGTCCGAGGCAGAGATCGACCTGAAGTGAGCTGAGCTGCGGCAAGGAGGAGGAGGAGGAGGAGGAGGAGAAGGAGATTGGAGATGATGATGAGGGATGTGTGCATGGAGGTGCTGCCTCCGATGGACCACTACGCGTCGAGGGGGAACTGGTTCATGGCGCGCAAGTGGTCGCCGGAGGAGAACAAGCAGTTCGAGCGGGCGCTCGCCGGGCTGGACCTGCGGTGCCCGGACTGGGACCGGGTGGCGCGCGCCATCCCGGGCA GGTCGGCGCTCGAGGTCATGAACCACTTCAGGGACCTCGAGCTCGACGTCCAGCAGATCGAGAATGGCATGGTGCCCTTCCCGGTCTACGGCGCCGCCGGAAAAGTTGACTAGATGAGCAACTGAAAGTAGTAATAATGCTGAATGACTCAGAGCAAACTTATTTTCCGTTTATCCAAATAAATTCTATGCAAACATCAAATGGGGGGAGCACCAATGAGCAAATTGATAGAACTGTGGATAAGTATGTGTGAAGTACAGCATGATCTGAAACCCCTCAATCAGATGGCAACCGGTGTTTCTCAGTGCATCACTGACCAGAAGAACATAGTGAATAGAATTCTCCTCATCCACCTCACAAAAGCTGGATCCATGATTGAATACAAAGTCCACTTCATGCATGATCAGTGTTCAGCAC]
[+] EMBL OSC100               [                                                                                                                                     GTGTGCATGGAGGTGCTGCCTCCGATGGACCACTACGCGTCGAGGGGGAACTGGTTCATGGCGCGCAAGTNGTCGCCGGA GAGAACAAGCAGTTCGAGCGGGCGCTC CCGGGCTGGACCTGCGGTGCCCGGACTGGGACCGGGTGGCGCGCG CATCCC GGCANGGTCGGCGCTCGAGGTCATGAACCACTTCAGGGACCTCGAGCTCGACGTCCAGCAG                                                                                                                                                                                                                                                                                                                                                                         ]


>consensus_11144#1 GCAAGCTTCGAGGGAGATCGATCGCCTCTTGTCCTCGGTCCGAGGCAGAGATCGACCTGA AGTGAGCTGAGCTGCGGCAAGGAGGAGGAGGAGGAGGAGGAGGAGAAGGAGATTGGAGAT GATGATGAGGGATGTGTGCATGGAGGTGCTGCCTCCGATGGACCACTACGCGTCGAGGGG GAACTGGTTCATGGCGCGCAAGTGGTCGCCGGAGGAGAACAAGCAGTTCGAGCGGGCGCT CGCCGGGCTGGACCTGCGGTGCCCGGACTGGGACCGGGTGGCGCGCGCCATCCCGGGCAG GTCGGCGCTCGAGGTCATGAACCACTTCAGGGACCTCGAGCTCGACGTCCAGCAGATCGA GAATGGCATGGTGCCCTTCCCGGTCTACGGCGCCGCCGGAAAAGTTGACTAGATGAGCAA CTGAAAGTAGTAATAATGCTGAATGACTCAGAGCAAACTTATTTTCCGTTTATCCAAATA AATTCTATGCAAACATCAAATGGGGGGAGCACCAATGAGCAAATTGATAGAACTGTGGAT AAGTATGTGTGAAGTACAGCATGATCTGAAACCCCTCAATCAGATGGCAACCGGTGTTTC TCAGTGCATCACTGACCAGAAGAACATAGTGAATAGAATTCTCCTCATCCACCTCACAAA AGCTGGATCCATGATTGAATACAAAGTCCACTTCATGCATGATCAGTGTTCAGCAC



consensusID : consensus_11144#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 605
fasta sequence
                              [AGAGGACAAGACAAGCCGGACACTTGGGATGGCGGGTTACGGGATGGGATTGCAAGATCAAGGATTGCAGTGTGGTGGTCCTCTACATGATCAGTTGGCCCGAGCCGAAGCATATTGTTTTAGATGAAACCAATCCAGGCAGCACCATGGATNAGATGTCTAGTGTAATATTGCCCTGCTGGTAGCTTCATCACTACCTGTATTGAAGTAATTAATTATGGGGAATTTTTCGGAACATAACAGAGGGGGTGTGGAGGGATCTTTGTGCCATGTTGGTGACTGATAACCTGTGATCCATAATTGTTGGCAATACTGAGAATGTAACGAAACGAACGTCAAGAACTTGATGCCGGTGGTATTTTCAGACAGTGATTGCTGCTAGTGCTGAACACTGATCATGCATGAAGTGGACTTTGTATTCAATCATGGATCCAGCTTTTGTGAGGTGGATGAGGAGAACTCTATTCACTATGTTTTTCTGGTCAGTGATGCACTGAGAAACACCGGTTGCCATCTGATTGAGGGGTTTCAGATCATGCTGTACTTCACACATACTTATCCACAGTTCTATCAATTTGCTCATTGGTGCTAAAAAAAAAAAAAAA]

[-] EMBL CA763018             [AGAGGACAAGACAAGCCGGACACTTGGGATGGCGGGTTACGGGATGGGATTGCAAGATCAAGGATTGCAGTGTGGTGGTCCTCTACATGATCAGTTGGCCCGAGCCGAAGCATATTGTTTTAGATGAAACCAATCCAGGCAGCACCATGGATNAGATGTCTAGTGTAATATTGCCCTGCTGGTAGCTTCATCACTACCTGTATTGAAGTAATTAATTATGGGGAATTTTTCGGAACATAACAGAGGGGGTGTGGAGGGATCTTTGTGCCATGTTGGTGACTGATAACCTGTGATCCATAATTGTTGGCAATACTGAGAATGTAACGAAACGAACGTCAAGAACTTGATGCCGGTGGTATTTTCAGACAGTGATTGCTGCTAGTGCTGAACACTGATCATGCATGAAGTGGACTTTGTATTCAATCATGGATCCAGCTTTTGTGAGGTGGATGAGGAGAACTCTATTCACTATGTTTTTCTGGTCAGTGATGCACTGAGAAACACCGGTTGCCATCTGATTGAGGGGTTTCAGATCATGCTGTACTTCACACATACTTATCCACAGTTCTATCAATTTGCTCATTGGTGCTAAAAAAAAAAAAAAA]


>consensus_11144#2 AGAGGACAAGACAAGCCGGACACTTGGGATGGCGGGTTACGGGATGGGATTGCAAGATCA AGGATTGCAGTGTGGTGGTCCTCTACATGATCAGTTGGCCCGAGCCGAAGCATATTGTTT TAGATGAAACCAATCCAGGCAGCACCATGGATNAGATGTCTAGTGTAATATTGCCCTGCT GGTAGCTTCATCACTACCTGTATTGAAGTAATTAATTATGGGGAATTTTTCGGAACATAA CAGAGGGGGTGTGGAGGGATCTTTGTGCCATGTTGGTGACTGATAACCTGTGATCCATAA TTGTTGGCAATACTGAGAATGTAACGAAACGAACGTCAAGAACTTGATGCCGGTGGTATT TTCAGACAGTGATTGCTGCTAGTGCTGAACACTGATCATGCATGAAGTGGACTTTGTATT CAATCATGGATCCAGCTTTTGTGAGGTGGATGAGGAGAACTCTATTCACTATGTTTTTCT GGTCAGTGATGCACTGAGAAACACCGGTTGCCATCTGATTGAGGGGTTTCAGATCATGCT GTACTTCACACATACTTATCCACAGTTCTATCAATTTGCTCATTGGTGCTAAAAAAAAAA AAAAA



consensusID : consensus_11144#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 141
fasta sequence
                              [CTCATCTAGTCAACTTTTCTTGTTTGTAGCTTCATTTTTATAATAAAATAATAACTTCTTTTTTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL CF330110             [CTCATCTAGTCAACTTTTCTTGTTTGTAGCTTCATTTTTATAATAAAATAATAACTTCTTTTTTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]


>consensus_11144#3 CTCATCTAGTCAACTTTTCTTGTTTGTAGCTTCATTTTTATAATAAAATAATAACTTCTT TTTTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_11144#0      ATCACCAGCTGCCACTCTCAAGAACCTGACTTTGGATCGCTATCCCTTTTGCTTCTTATT 60
consensus_11144#2      ------------------------------------------------------------
consensus_11144#3      ------------------------------------------------------------
consensus_11144#1      ------------------------------------------------------------
                                                                                   

consensus_11144#0      AGTGCTCAGGGAAAGAAAGCTATAGCAGTAGCTAAATAAGCCAGAGAGAGGCTAAGAGAG 120
consensus_11144#2      ------------------------------------------------------------
consensus_11144#3      ------------------------------------------------------------
consensus_11144#1      ------------------------------------------------------------
                                                                                   

consensus_11144#0      AGAGAGGTGAGGGGAGAGAAGAAATCCTCGCAGAATTCGAGCAAGAACCGAGGGAGATCG 180
consensus_11144#2      ------------------------------------------------------------
consensus_11144#3      ------------------------------------------------------------
consensus_11144#1      ------------------------------------------------------------
                                                                                   

consensus_11144#0      ATCGCCTCTTGTCCTCGTTCCGAGGCAGAGATCGACCTGAAGTGAGCTGAGCTGCGGCAA 240
consensus_11144#2      ------------------------------------------------------------
consensus_11144#3      ------------------------------------------------------------
consensus_11144#1      ------------------------------------------------------------
                                                                                   

consensus_11144#0      GGAGGAGGAGGAGGAGGAGGAGGAGAAGGAGATTGGAGATGATGATGAGGGATGTGTGCA 300
consensus_11144#2      ------------------------------------------------------------
consensus_11144#3      ------------------------------------------------------------
consensus_11144#1      ------------------------------------------------------------
                                                                                   

consensus_11144#0      TGGAGGTGCTGCCTCCGATGGACCACTACGCGTCGAGGGGGAACTGGTTCATGGCGCGCA 360
consensus_11144#2      ------------------------------------------------------------
consensus_11144#3      ------------------------------------------------------------
consensus_11144#1      ------------------------------------------------------------
                                                                                   

consensus_11144#0      AGTGGTCGCCGGAGGAGAACAAGCAGTTCGAGCGGGCGCTCGCCGGGCTGGACCTGCGGT 420
consensus_11144#2      ------------------------------------------------------------
consensus_11144#3      ------------------------------------------------------------
consensus_11144#1      ------------------------------------------------------------
                                                                                   

consensus_11144#0      GCCCGGACTGGGACCGGGTGGCGCGCGCCATCCCGGGCAGGTCGGCGCTCGAGGTCATGA 480
consensus_11144#2      ------------------------------------------------------------
consensus_11144#3      ------------------------------------------------------------
consensus_11144#1      ------------------------------------------------------------
                                                                                   

consensus_11144#0      ACCACTTCAGGGACCTCGAGCTCGACGTCCAGCAGATCGAGAATGGCATGGTGCCCTTCC 540
consensus_11144#2      ------------------------------------------------------------
consensus_11144#3      ------------------------------------------------------------
consensus_11144#1      ------------------------------------------------------------
                                                                                   

consensus_11144#0      CGGTCTACGGCGCCGCCGCCGCCGGCGGCGCGTTCACACTGCAGTGGGATGGCGCCCATG 600
consensus_11144#2      ------------------------------------------------------------
consensus_11144#3      ------------------------------------------------------------
consensus_11144#1      ------------------------------------------------------------
                                                                                   

consensus_11144#0      GCGTCGGGGACTTCAGGAACGCGTACCGGTTCGGCGGCGGCGGCGGCGGGAAGCGGCACT 660
consensus_11144#2      ------------------------------------------------------------
consensus_11144#3      ------------------------------------------------------------
consensus_11144#1      ------------------------------------------------------------
                                                                                   

consensus_11144#0      TCGGCCGTACGCCGGAGCAGGAGAGGAAGAAAGGCGTGCCATGGACGGAGGAGGAGCACA 720
consensus_11144#2      ------------------------------------------------------------
consensus_11144#3      ------------------------------------------------------------
consensus_11144#1      ------------------------------------------------------------
                                                                                   

consensus_11144#0      AGTTGTTCCTCTTAGGACTGAAGAAATATGGGAAAGGGGATTGGAGGAACATATCCCGCA 780
consensus_11144#2      ------------------------------------------------------------
consensus_11144#3      ------------------------------------------------------------
consensus_11144#1      ------------------------------------------------------------
                                                                                   

consensus_11144#0      ATTTCGTGCAGACGAGGACGCCGACGCAGGTTGCCAGCCATGCGCAGAAGTATTTCATCA 840
consensus_11144#2      ------------------------------------------------------------
consensus_11144#3      ------------------------------------------------------------
consensus_11144#1      ------------------------------------------------------------
                                                                                   

consensus_11144#0      GGCTCAACTCCGGTGGCAAGGACAAGAGGAGATCCAGCATCCATGACATTACCACGGTTA 900
consensus_11144#2      ------------------------------------------------------------
consensus_11144#3      ------------------------------------------------------------
consensus_11144#1      ------------------------------------------------------------
                                                                                   

consensus_11144#0      ACCTGACGGATGACCGGCCTCCCTCGCCATCACAGTCCTCCTTGATCAGCAATCAGTCCA 960
consensus_11144#2      ------------------------------------------------------------
consensus_11144#3      ------------------------------------------------------------
consensus_11144#1      --------------------------------------------------------GCAA 4
                                                                                   

consensus_11144#0      ACACATCAACTCTGACCGCAGCGGTTGCCCCCTTCTCATCGACGGCCGATGTCAAGCCAC 1020
consensus_11144#2      ------------------------------------------------------------
consensus_11144#3      ------------------------------------------------------------
consensus_11144#1      GCTTCGAGGGAGATCGATCGCCTCTTGTCCTCGGTCCGAGGCAGAGATCGACCTGAAGTG 64
                                                                                   

consensus_11144#0      AGAATGCCGCGAATGCGTCCTTCAATTCGCCAAGCCGGACACTTGGGATGGCGGGTTACG 1080
consensus_11144#2      -------------------AGAGGACAAGACAAGCCGGACACTTGGGATGGCGGGTTACG 41
consensus_11144#3      ------------------------------------------------------------
consensus_11144#1      AGCTGAGCTGCGGCAAGGAGGAGGAGGAGGAGGAGGAGGAGAAGGAGATTGGAGATGATG 124
                                                                                   

consensus_11144#0      GGATGGGATTGCAAGATCAAGGATTGCAGTGTGGTGGTCCTCTACATGATCAGTTGGCCG 1140
consensus_11144#2      GGATGGGATTGCAAGATCAAGGATTGCAGTGTGGTGGTCCTCTACATGATCAGTTGGCC- 100
consensus_11144#3      ------------------------------------------------------------
consensus_11144#1      ATGAGGGATGTGTGCATGGAGGTGCTGCCTCCGATGGACCACTACGCGTCGAGGGGGAAC 184
                                                                                   

consensus_11144#0      CGAGCCGAAGCATATTGTTTTAGATGAAACCAATCCAGGCAGCACCATGGATCAGATGTC 1200
consensus_11144#2      CGAGCCGAAGCATATTGTTTTAGATGAAACCAATCCAGGCAGCACCATGGATNAGATGTC 160
consensus_11144#3      ------------------------------------------------------CTCATC 6
consensus_11144#1      TGGTTCATGGCGCGCAAGTGGTCGCCGGAGGAGAACAAGCAGTTCGAGCGGGCGCTCGCC 244
                                                                                  *

consensus_11144#0      TAGTGTAATAT----TGCCCTGCTTGTAGCTTCAT------CACTACCTGTATTGAAGTA 1250
consensus_11144#2      TAGTGTAATAT----TGCCCTGCTGGTAGCTTCAT------CACTACCTGTATTGAAGTA 210
consensus_11144#3      TAGTCAACTTT----T--CTTGTTTGTAGCTTCAT------TTTTA----TAATAAAATA 50
consensus_11144#1      GGGCTGGACCTGCGGTGCCCGGACTGGGACCGGGTGGCGCGCGCCATCCCGGGCAGGTCG 304
                         *       *    *  *  *   *   *    *          *              

consensus_11144#0      ATT----AATTATGGGGAATTTTTCGGAACATAACAGAGGGGGTGTGGAGGGATCTTTGT 1306
consensus_11144#2      ATT----AATTATGGGGAATTTTTCGGAACATAACAGAGGGGGTGTGGAGGGATCTTTGT 266
consensus_11144#3      ATA----ACTTCTT-----TTTTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 101
consensus_11144#1      GCGCTCGAGGTCATGAACCACTTCAGGGACCTCGAGCTCGACGTCCAGCAGATCGAGAAT 364
                              *  *          **     *                               

consensus_11144#0      GCCATGTTGG--TGACTGATAACCTGTGATCCATAATTGTTGGCAATACTGAGAATGTAA 1364
consensus_11144#2      GCCATGTTGG--TGACTGATAACCTGTGATCCATAATTGTTGGCAATACTGAGAATGTAA 324
consensus_11144#3      AAAAAAAAAA--AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA------------------ 141
consensus_11144#1      GGCATGGTGCCCTTCCCGGTCTACGGCGCCGCCGGAAAAGTTGACTAGATGAGCAACTGA 424
                          *                               *                        

consensus_11144#0      CGAAACGAACGTCAAGAACTTGATGCCGGTGGTATTTTCAGACAGTGATTGCTGCTAGTG 1424
consensus_11144#2      CGAAACGAACGTCAAGAACTTGATGCCGGTGGTATTTTCAGACAGTGATTGCTGCTAGTG 384
consensus_11144#3      ------------------------------------------------------------
consensus_11144#1      AAGTAGTAATAATGCTGAATGACTCAGAGCAAACTTATTTTCCGTTTATCCAAATAAATT 484
                                                                                   

consensus_11144#0      CTGAACACTGATCATGCATGAAGTGGACTTTGTATTCAATCATGGATCCAGCTTTTGTGA 1484
consensus_11144#2      CTGAACACTGATCATGCATGAAGTGGACTTTGTATTCAATCATGGATCCAGCTTTTGTGA 444
consensus_11144#3      ------------------------------------------------------------
consensus_11144#1      CTATGCAAACATCAAATGGGGGGAGCACCAATGAGCAAATT---GATAGAACTGTGGATA 541
                                                                                   

consensus_11144#0      GGTGGATGAGGAGAATTCTATTCACTATGTTCTTCTGGTCAGTGATGCACTGAGAAACAC 1544
consensus_11144#2      GGTGGATGAGGAGAACTCTATTCACTATGTTTTTCTGGTCAGTGATGCACTGAGAAACAC 504
consensus_11144#3      ------------------------------------------------------------
consensus_11144#1      AGTATGTGTGAAGTACAGCATGATCTGAAACCCCTCAATCAGATGGCAACCGGTGTTTCT 601
                                                                                   

consensus_11144#0      CGGTTGCCATCTGATTGAGGGGTTTCAGATCATGCTGTACTTCACACATACTTATCCACA 1604
consensus_11144#2      CGGTTGCCATCTGATTGAGGGGTTTCAGATCATGCTGTACTTCACACATACTTATCCACA 564
consensus_11144#3      ------------------------------------------------------------
consensus_11144#1      CAGTGCATCACTGACCAGAAGAACATAGTGAATAGAATTCTCCTCATCCACCTCACAAAA 661
                                                                                   

consensus_11144#0      GTTCTATCAATTTGCTCATTGGTGCTCCCCCCATTTGATGTTTGCATAGAATTTATTTGG 1664
consensus_11144#2      GTTCTATCAATTTGCTCATTGGTGCTAAAAAAAAAAAAAAA------------------- 605
consensus_11144#3      ------------------------------------------------------------
consensus_11144#1      GCTGGATCCATGATTGAATACAAAGTCCACTTCATGCATGATCAGTGTTCAGCAC----- 716
                                                                                   

consensus_11144#0      ATAAACGGAAAATAAGTTTGCTCTGAGTCATTCAGCATTATTACTACTTTCAGTTGCTCA 1724
consensus_11144#2      ------------------------------------------------------------
consensus_11144#3      ------------------------------------------------------------
consensus_11144#1      ------------------------------------------------------------
                                                                                   

consensus_11144#0      TCTAGTCAACTTTTCTTGTTTGTAGCTTCATTTTTATAATAAAATAATAACTTCTTTTTT 1784
consensus_11144#2      ------------------------------------------------------------
consensus_11144#3      ------------------------------------------------------------
consensus_11144#1      ------------------------------------------------------------
                                                                                   

consensus_11144#0      TTAATTCTGTTGCTTGACCTTTGGTTGTTTGTGTGCAATTAAGTCCTATACTGTATTCTT 1844
consensus_11144#2      ------------------------------------------------------------
consensus_11144#3      ------------------------------------------------------------
consensus_11144#1      ------------------------------------------------------------
                                                                                   

consensus_11144#0      CTGTGGCTCTATTGATGATGCTACTTCCACCAAAAATGAGATTGGTAATGAGTCAGAGTT 1904
consensus_11144#2      ------------------------------------------------------------
consensus_11144#3      ------------------------------------------------------------
consensus_11144#1      ------------------------------------------------------------
                                                                                   

consensus_11144#0      GCACTAACTTGGCATCTCATGCTTTCTCTGCCCCCTTTTCCATCAACTTTATAATTCTTT 1964
consensus_11144#2      ------------------------------------------------------------
consensus_11144#3      ------------------------------------------------------------
consensus_11144#1      ------------------------------------------------------------
                                                                                   

consensus_11144#0      TTTCCCCCTTCTTTTTGGCCCTGTTATTATTTCCCTCCTTGAGAAAGGCATCTCAGATAT 2024
consensus_11144#2      ------------------------------------------------------------
consensus_11144#3      ------------------------------------------------------------
consensus_11144#1      ------------------------------------------------------------
                                                                                   

consensus_11144#0      GAGACAGATTTTTGTGACAACAGTAAAGAATAGATCAGGGAGCAGCATTGAAAATGCCCA 2084
consensus_11144#2      ------------------------------------------------------------
consensus_11144#3      ------------------------------------------------------------
consensus_11144#1      ------------------------------------------------------------
                                                                                   

consensus_11144#0      AATGTTGCCTACTCCTTCCTTCCCAAATGTAGTTATTTTTGGAGTTCAAATTTGTGGTAA 2144
consensus_11144#2      ------------------------------------------------------------
consensus_11144#3      ------------------------------------------------------------
consensus_11144#1      ------------------------------------------------------------
                                                                                   

consensus_11144#0      AATGTAATTATT 2156
consensus_11144#2      ------------
consensus_11144#3      ------------
consensus_11144#1      ------------
                                   




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)