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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11149#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1390 fasta sequence
[TCTGCTGCACTGGCACGAACGTCGCCGGGATCCCGACCCGGTTCGTCCCTCCCAAGCCCCAACCCGAGGAGCAAAGCCGGGGCATGGCAGAACCGTGAATAAGCCGCAACCTCTGTGGCGGTTTCCGACCAATCCCCTTCTTCTCCACCCAACCAGGTGAGAAATGCGATTGGGCGATGGCTTCGCTTTCCTCGCGCTATAAATTCCGCGGGCAACAATAAAGAATTGGAGCGGAGCAGCAAGTGGTGGGAGGGAGAATCCGGAATCCCAAAGCAACAGCAGCTAGGGTGAAGGGAGGGAGGGAGGGGGAGAGGGAGAACCGCGGCGATGTCGTCGTGGAACTCGGTGGGGATGGAGGTGCTGTACCAGGTGCTCGGGTGGGTCGCCTTCTTCGCTTGGTCCTTCAGCTTCTACCCGCAGGTCTTCCTCAACTTCAAGCGCAAGAGTGTGGTGGGTCTGAACTTTGATTTTCTGGTGTTGAACTTGACAAAGCACTCATCCTACCTCATATACAATGCTGCTCTATTCTTCAGCCCCTTCATCCAGAGACAGTATCATGAGACATATGGTGATAAAGAGATGATTCCTGTCGCGGCAAATGATGTTGCCTTTTCTGTACACGCGGTTGCCTTGACAGCTTTTACCCTTTTTCAAGTATTCATCTACGAGCGAGGAAACCAGAAAATCTCCAAAGTCTGCATATCAATCACTGCTATTGTGTGGACAGCTGCTATTGTTTGCCTTATTGTAGCTTGGCCAAAAAGTAACTGGCTCTGGCTTATAGATGTGTTCAATTCAATACAGGTTGGGATGACAGCAATCAAATACATTCCTCAGGCCATCATGAACTTCAGGAGGAAGAGTACAATTGGTTGGAGTATTGGCAATATTTTACTTGATCTTACAGGAGGGGTGCTAAACTTTGGCCAGATGGGTGTGCAATCAATAGATCAACACACGCTAGTGAACTTCTATGGAAATATTGGGAAAACCCTTCTTTCATTGGAAGTCGTTTTCTTCGACATCTTATTCATAATCCAACACTATGTGCTGTACCCTGTCAAACGAGATGAGAATGGTAAGGCTATCATTTCTGAAAGGGTAGCTCCTCTTATCAGGCCTTCAGACAAGCCTGAAGAAGATAGTGTGTGATATACCTATTGTATTTCACCTTTTTTATGGCCCTGATTACATTCGCTTCAGGGTATAGTCCCAACTATCCATTCATATGAAACAAATGCATTTTTCGTAAAACTAAATTTTGTACATATTTGTTTACGGATTAATGTAAAGATGTAGATACAATAGGCCTTTGATACTAGTCTTAAAACAATGTTTGTGATTATGTAAGTGTAAGTATACTTACAATATCTAAAAAAAAAAAAAAAAA]
[+] EMBL AK068027 [TCTGCTGCACTGGCACGAACGTCGCCGGGATCCCGACCCGGTTCGTCCCTCCCAAGCCCCAACCCGAGGAGCAAAGCCGGGGCATGGCAGAACCGTGAATAAGCCGCAACCTCTGTGGCGGTTTCCGACCAATCCCCTTCTTCTCCACCCAACCAGGTGAGAAATGCGATTGGGCGATGGCTTCGCTTTCCTCGCGCTATAAATTCCGCGGGCAACAATAAAGAATTGGAGCGGAGCAGCAAGTGGTGGGAGGGAGAATCCGGAATCCCAAAGCAACAGCAGCTAGGGTGAAGGGAGGGAGGGAGGGGGAGAGGGAGAACCGCGGCGATGTCGTCGTGGAACTCGGTGGGGATGGAGGTGCTGTACCAGGTGCTCGGGTGGGTCGCCTTCTTCGCTTGGTCCTTCAGCTTCTACCCGCAGGTCTTCCTCAACTTCAAGCGCAAGAGTGTGGTGGGTCTGAACTTTGATTTTCTGGTGTTGAACTTGACAAAGCACTCATCCTACCTCATATACAATGCTGCTCTATTCTTCAGCCCCTTCATCCAGAGACAGTATCATGAGACATATGGTGATAAAGAGATGATTCCTGTCGCGGCAAATGATGTTGCCTTTTCTGTACACGCGGTTGCCTTGACAGCTTTTACCCTTTTTCAAGTATTCATCTACGAGCGAGGAAACCAGAAAATCTCCAAAGTCTGCATATCAATCACTGCTATTGTGTGGACAGCTGCTATTGTTTGCCTTATTGTAGCTTGGCCAAAAAGTAACTGGCTCTGGCTTATAGATGTGTTCAATTCAATACAGGTTGGGATGACAGCAATCAAATACATTCCTCAGGCCATCATGAACTTCAGGAGGAAGAGTACAATTGGTTGGAGTATTGGCAATATTTTACTTGATCTTACAGGAGGGGTGCTAAACTTTGGCCAGATGGGTGTGCAATCAATAGATCAACACACGCTAGTGAACTTCTATGGAAATATTGGGAAAACCCTTCTTTCATTGGAAGTCGTTTTCTTCGACATCTTATTCATAATCCAACACTATGTGCTGTACCCTGTCAAACGAGATGAGAATGGTAAGGCTATCATTTCTGAAAGGGTAGCTCCTCTTATCAGGCCTTCAGACAAGCCTGAAGAAGATAGTGTGTGATATACCTATTGTATTTCACCTTTTTTATGGCCCTGATTACATTCGCTTCAGGGTATAGTCCCAACTATCCATTCATATGAAACAAATGCATTTTTCGTAAAACTAAATTTTGTACATATTTGTTTACGGATTAATGTAAAGATGTAGATACAATAGGCCTTTGATACTAGTCTTAAAACAATGTTTGTGATTATGTAAGTGT ]
[+] EMBL C26318 [ GCGGCGATGTCGTCGTGGAACTCGGTGGGGATGGAGGTGCTGTACCAGGTGCTCGGGTGGGTCGCCTTCTTCGCTTGGTCCTTCAGCTTCTACCCGCAGGTCTTCCTCAACTTCAAGCGCAAGAGTGTGGTGGGTCTGAACTTTGATTTTCTGGTGTTGAACTTGACAAAGCACTCATCCTACCTCATATACAATGCTGCTCTATTCTTCAGCCCCTTCATCCAGAGACAGTATCATGAGACATATGGTGATAAAGAGATGATTCCTGTCGCGGCAAATGATGTTGCCTTTTCTGTACACGCGGTTGCCTTGACAGCTTTTACCCTTTTTCAAGTATTCATCTACGAGCGAGGAAACCAGAAAATCTCCAAAGTCTGCATATCAATCACTGCTATTGTGTGGAC ]
[+] EMBL AU066053 [ GCTGTACCAGGTGCTCGGGTGGGTCGCCTTCTTCGCTTGGTCCTTCAGCTTCTACCCGCA GTCTTCCTCAACTTCAAGCGCAAGAGTGTGGTGGGTCTGAACTTTGATTTTCTGGTGTTGAACTTGACAAAGCACTCATCCTACCTCATATACAATGCTGCTCTATTCTTCAGCCCCTTCATCCAGAGACAGTATCATGAGACATATGGTGATAAAGAGATGATTCCTGTCGCGGCAAATGATGTTGCCTTTTCTGTACACGCGGTTGCCTTGACAGCTTTTACCCTTTTTCAAGTATTCATCTACGAGCGAGGAAACCAGAAAATCTCCAAAGTCTGCATATCAATCACTGCTATTGTGTGGACAGCTGCTATTGTTTGCCTTATTGTAGCTTGGCCAAAAAGTAACTGGCTCTGGCTTATAGATGTGTTCAATTCAATACAGGTTGGGATGACAGCAATCAAATACATTCCTCAGGC ]
[+] EMBL AU101899 [ ACACTATGTGCTGTACCCTGTCAAACGAGATGAGAATGGTAAGGCTATCATTTCTGAAAGGGTAGCTCCTCTTATCAGGCCTTCAGACAAGCCTGAAGAAGATAGTGTGTGATATACCTATTGTATTTCACCTTTTTTATGGCCCTGATTACATTCGCTTCAGGGTATAGTCCCAACTATCCATTCATATGAAACAAATGCATTTTTCGTAAAACTAAATTTTGTACATATTTGTTTACGGATTAATGTAAAGATGTAGATACAATAGGCCTTTGATACTAGTCTTAAAACAATGTTTGTGATTATGTAAGTGTAAGTATACTTACAATATCTAAAAAAA ]
[+] EMBL AU108261 [ TTCTGAAAGGGTAGCTCCTCTTATCAGGCCTTCAGNCAAGCCTGAAGAAGATAGTGTGTGATATACCTATTGTNTTTCACCTTTTTTATGGCCCTGATTACATTCGCTTCAGGGTATAGTCCCNACTATCCATTCATATGAAACAAATGCATTTTTCGTAAAACTAAATTTTGTACATATTTGTTTACGGATTAATGTAAAGATGTAGATACAATAGGCCTTTGATACTAGTCTTAAAACAATGTTTGTGATTATGTAAGTGTAAGTATACTTACAATATCAAAAAAAAAAAAAAAAAA]
consensusID : consensus_11149#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1158 fasta sequence
[AAGTGGTGGGAGGGAGAATCCGGAATCCCAAAGCAACAGCAGCTAGGGTGAAGGGAGGGAGGGAGGGGGAGAGGGAGAACCGCGGCGATGTCGTCGTGGAACTCGGTGGGGATGGAGGTGCTGTACCAGGTGCTCGGGTGGGTCGCCTTCTTCGCTTGGTCCTTCAGCTTCTACCCGCAGGTCTTCCTCAACTTCAAGCGCAAGAGTGTGGTGGGTCTGAACTTTGATTTTCTGGTGTTGAACTTGACAAAGCACTCATCCAACCTCATATACAATGCTGCTCTATTCTTCAGCCCCTTCATCCAGAGACAGTATCATGAGACATATGGTGATAAAGAGATGATTCCTGTCGCGGCAAATGATGTTGCCTTTTCTGTACACGCGGTTGCCTTGACAGCTTTTACCCTTTTTCAAGTATTCATCTACGAGCGAGGAAACCAGAAAATCTCCAAAGTCTGCATATCAATCACTGCTATTGTGTGGACAGCTGCTATTGTTTGCCTTATTGTAGCTTGGCCAAAAAGTAACTGGCTCTGGCTTATAGATGTGTTCAATTCAATACAGGTTGGGATGACAGCAATCAAATACATTCCTCAGGCCATCATGAACTTCAGGAGGAAGAGTACAATTGGTTGGAGTATTGGCAATATTTTACTTGATCTTACAGGAGGGGTGCTAAACTTTGGCCAGATGGGTGTGCAATCAATAGATCAACACACGCTAGTGAACTTCTATGGAAATATTGGGAAAACCCTTCTTTCATTGGAAGTCGTTTTCTTCGACATCTTATTCATAATCCAACACTATGTGCTGTACCCTGTCAAACGAGATGAGAATGCAGCCAATGGCTATCCAATTCTCCCCATCGAAGCAAAACACGTGGCGGCAGCATAAAACTTTAAGCTGGAGAAGATGGGCCCTGTTGCCATTAGGTGGGCCGAGAAAAGGGCCCAGACTATTTAGAAATGCTCCAAGCCCATCCAAAGAAGCGTAAAATCTCTTTGGCAAGAATTTGGCTTTGTACATCATCCAAGATGGATAACGAAGATCAGATGTATCGAGATGGAATTGTCCTAGTTTATTTTCATCAATGTAAGCAAAAATGTATCATGGAATATTTTTTAGTCAATTTAAGTATTCTTCAAGTCATAAAAAAAA]
[+] EMBL AK071421 [AAGTGGTGGGAGGGAGAATCCGGAATCCCAAAGCAACAGCAGCTAGGGTGAAGGGAGGGAGGGAGGGGGAGAGGGAGAACCGCGGCGATGTCGTCGTGGAACTCGGTGGGGATGGAGGTGCTGTACCAGGTGCTCGGGTGGGTCGCCTTCTTCGCTTGGTCCTTCAGCTTCTACCCGCAGGTCTTCCTCAACTTCAAGCGCAAGAGTGTGGTGGGTCTGAACTTTGATTTTCTGGTGTTGAACTTGACAAAGCACTCATCCAACCTCATATACAATGCTGCTCTATTCTTCAGCCCCTTCATCCAGAGACAGTATCATGAGACATATGGTGATAAAGAGATGATTCCTGTCGCGGCAAATGATGTTGCCTTTTCTGTACACGCGGTTGCCTTGACAGCTTTTACCCTTTTTCAAGTATTCATCTACGAGCGAGGAAACCAGAAAATCTCCAAAGTCTGCATATCAATCACTGCTATTGTGTGGACAGCTGCTATTGTTTGCCTTATTGTAGCTTGGCCAAAAAGTAACTGGCTCTGGCTTATAGATGTGTTCAATTCAATACAGGTTGGGATGACAGCAATCAAATACATTCCTCAGGCCATCATGAACTTCAGGAGGAAGAGTACAATTGGTTGGAGTATTGGCAATATTTTACTTGATCTTACAGGAGGGGTGCTAAACTTTGGCCAGATGGGTGTGCAATCAATAGATCAACACACGCTAGTGAACTTCTATGGAAATATTGGGAAAACCCTTCTTTCATTGGAAGTCGTTTTCTTCGACATCTTATTCATAATCCAACACTATGTGCTGTACCCTGTCAAACGAGATGAGAATGCAGCCAATGGCTATCCAATTCTCCCCATCGAAGCAAAACACGTGGCGGCAGCATAAAACTTTAAGCTGGAGAAGATGGGCCCTGTTGCCATTAGGTGGGCCGAGAAAAGGGCCCAGACTATTTAGAAATGCTCCAAGCCCATCCAAAGAAGCGTAAAATCTCTTTGGCAAGAATTTGGCTTTGTACATCATCCAAGATGGATAACGAAGATCAGATGTATCGAGATGGAATTGTCCTAGTTTATTTTCATCAATGTAAGCAAAAATGTATCATGGAATATTTTTTAGTCAATTTAAGTAT ]
[-] EMBL CF316411 [ TCAGGAGGAAGAGTACAATTGGTTGGAGTATTGGCAATATTTTACTTGATCTTACAGGAGGGGTGCTAAACTTTGGCCAGATGGGTGTGCAATCAATAGATCAACACACGCTAGTGAACTTCTATGGAAATATTGGGAAAACCCTTCTTTCATTGGAAGTCGTTTTCTTCGACATCTTATTCATAATCCAACACTATGTGCTGTACCCTGTCAAACGAGATGAGAATGCAGCCAATGGCTATCCAATTCTCCCCATCGAAGCAAAACACGTGGCGGCAGCATAAAACTTTAAGCTGGAGAAGATGGGCCCTGTTGCCATTAGGTGGGCCGAGAAAAGGGCCCAGACTATTTAGAAATGCTCCAAGCCCATCCAAAGAAGCGTAAAATCTCTTTGGCAAGAATTTGGCTTTGTACATCATCCAAGATGGATAACGAAGATCAGATGTATCGAGATGGAATTGTCCTAGTTTATTTTCATCAATGTAAGCAAAAATGTATCATGGAATATTTTTTAGTCAATTTAAGTATTCTTCAAGTCATAAAAAAAA]
[+] EMBL CF316410 [ TTCATAATCCAACACTATGTGCTGTACCCTGTCAAACGAGATGAGAATGCAGCCAATGGCTATCCAATTCTCC ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_11149#0 TCTGCTGCACTGGCACGAACGTCGCCGGGATCCCGACCCGGTTCGTCCCTCCCAAGCCCC 60
consensus_11149#1 ------------------------------------------------------------
consensus_11149#0 AACCCGAGGAGCAAAGCCGGGGCATGGCAGAACCGTGAATAAGCCGCAACCTCTGTGGCG 120
consensus_11149#1 ------------------------------------------------------------
consensus_11149#0 GTTTCCGACCAATCCCCTTCTTCTCCACCCAACCAGGTGAGAAATGCGATTGGGCGATGG 180
consensus_11149#1 ------------------------------------------------------------
consensus_11149#0 CTTCGCTTTCCTCGCGCTATAAATTCCGCGGGCAACAATAAAGAATTGGAGCGGAGCAGC 240
consensus_11149#1 ------------------------------------------------------------
consensus_11149#0 AAGTGGTGGGAGGGAGAATCCGGAATCCCAAAGCAACAGCAGCTAGGGTGAAGGGAGGGA 300
consensus_11149#1 AAGTGGTGGGAGGGAGAATCCGGAATCCCAAAGCAACAGCAGCTAGGGTGAAGGGAGGGA 60
************************************************************
consensus_11149#0 GGGAGGGGGAGAGGGAGAACCGCGGCGATGTCGTCGTGGAACTCGGTGGGGATGGAGGTG 360
consensus_11149#1 GGGAGGGGGAGAGGGAGAACCGCGGCGATGTCGTCGTGGAACTCGGTGGGGATGGAGGTG 120
************************************************************
consensus_11149#0 CTGTACCAGGTGCTCGGGTGGGTCGCCTTCTTCGCTTGGTCCTTCAGCTTCTACCCGCAG 420
consensus_11149#1 CTGTACCAGGTGCTCGGGTGGGTCGCCTTCTTCGCTTGGTCCTTCAGCTTCTACCCGCAG 180
************************************************************
consensus_11149#0 GTCTTCCTCAACTTCAAGCGCAAGAGTGTGGTGGGTCTGAACTTTGATTTTCTGGTGTTG 480
consensus_11149#1 GTCTTCCTCAACTTCAAGCGCAAGAGTGTGGTGGGTCTGAACTTTGATTTTCTGGTGTTG 240
************************************************************
consensus_11149#0 AACTTGACAAAGCACTCATCCTACCTCATATACAATGCTGCTCTATTCTTCAGCCCCTTC 540
consensus_11149#1 AACTTGACAAAGCACTCATCCAACCTCATATACAATGCTGCTCTATTCTTCAGCCCCTTC 300
********************* **************************************
consensus_11149#0 ATCCAGAGACAGTATCATGAGACATATGGTGATAAAGAGATGATTCCTGTCGCGGCAAAT 600
consensus_11149#1 ATCCAGAGACAGTATCATGAGACATATGGTGATAAAGAGATGATTCCTGTCGCGGCAAAT 360
************************************************************
consensus_11149#0 GATGTTGCCTTTTCTGTACACGCGGTTGCCTTGACAGCTTTTACCCTTTTTCAAGTATTC 660
consensus_11149#1 GATGTTGCCTTTTCTGTACACGCGGTTGCCTTGACAGCTTTTACCCTTTTTCAAGTATTC 420
************************************************************
consensus_11149#0 ATCTACGAGCGAGGAAACCAGAAAATCTCCAAAGTCTGCATATCAATCACTGCTATTGTG 720
consensus_11149#1 ATCTACGAGCGAGGAAACCAGAAAATCTCCAAAGTCTGCATATCAATCACTGCTATTGTG 480
************************************************************
consensus_11149#0 TGGACAGCTGCTATTGTTTGCCTTATTGTAGCTTGGCCAAAAAGTAACTGGCTCTGGCTT 780
consensus_11149#1 TGGACAGCTGCTATTGTTTGCCTTATTGTAGCTTGGCCAAAAAGTAACTGGCTCTGGCTT 540
************************************************************
consensus_11149#0 ATAGATGTGTTCAATTCAATACAGGTTGGGATGACAGCAATCAAATACATTCCTCAGGCC 840
consensus_11149#1 ATAGATGTGTTCAATTCAATACAGGTTGGGATGACAGCAATCAAATACATTCCTCAGGCC 600
************************************************************
consensus_11149#0 ATCATGAACTTCAGGAGGAAGAGTACAATTGGTTGGAGTATTGGCAATATTTTACTTGAT 900
consensus_11149#1 ATCATGAACTTCAGGAGGAAGAGTACAATTGGTTGGAGTATTGGCAATATTTTACTTGAT 660
************************************************************
consensus_11149#0 CTTACAGGAGGGGTGCTAAACTTTGGCCAGATGGGTGTGCAATCAATAGATCAACACACG 960
consensus_11149#1 CTTACAGGAGGGGTGCTAAACTTTGGCCAGATGGGTGTGCAATCAATAGATCAACACACG 720
************************************************************
consensus_11149#0 CTAGTGAACTTCTATGGAAATATTGGGAAAACCCTTCTTTCATTGGAAGTCGTTTTCTTC 1020
consensus_11149#1 CTAGTGAACTTCTATGGAAATATTGGGAAAACCCTTCTTTCATTGGAAGTCGTTTTCTTC 780
************************************************************
consensus_11149#0 GACATCTTATTCATAATCCAACACTATGTGCTGTACCCTGTCAAACGAGATGAGAATGGT 1080
consensus_11149#1 GACATCTTATTCATAATCCAACACTATGTGCTGTACCCTGTCAAACGAGATGAGAATGCA 840
**********************************************************
consensus_11149#0 ----AAGGCTATC--ATTTCTGAAAGGGTAGCTCCTCTTATCAGGCCTTCAGACAAGCCT 1134
consensus_11149#1 GCCAATGGCTATCCAATTCTCCCCATCGAAGCAAAACACGTGGCGGCAGCATAAAACTTT 900
* ******* *** * * *** * * * * ** * ** *
consensus_11149#0 GAA--GAAGATAGTGTGTGATATACCTATTGTATTTCACCTTTTTTATGGCCCTGATTAC 1192
consensus_11149#1 AAGCTGGAGAAGATGGGCCCTGTTGCCATTAGGTGG-GCCGAGAAAAGGGCCCAGACTA- 958
* * *** ** * * * * *** * ** * ***** ** **
consensus_11149#0 ATTCGCTTCAGGGTATAGTCCCAACTATCCATTCATATGAAACAAATGCATTTTTCGTAA 1252
consensus_11149#1 ------TTTAGAA-ATGCTCCAAGC---CCATCCAAAGAAGCGTAAAATCTCTTTGGCAA 1008
** ** ** *** * * **** ** * * ** * *** * **
consensus_11149#0 -AACTAAATTTTGTACATATTTGTTTACGGATTAATGTAA--AGATGTA----GATACAA 1305
consensus_11149#1 GAATTTGGCTTTGTACATCATCCAAGATGGATAACGAAGATCAGATGTATCGAGATGGAA 1068
** * ********* * * **** * * ******* *** **
consensus_11149#0 TAGGCCT--TTGATACTAGTCT---TAAAACAATGTTTGTGATTATGTAAGTGTAAGTAT 1360
consensus_11149#1 TTGTCCTAGTTTATTTTCATCAATGTAAGCAAAAATGTATCATGGAATATTTTTTAGTCA 1128
* * *** ** ** * ** *** ** * * * ** ** * * ***
consensus_11149#0 ACTTACAATATCTAAAAAAAAAAAAAAAAA 1390
consensus_11149#1 ATTTAAGTATTCTTCAAGTCATAAAAAAAA 1158
* *** *** ** * ********
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||