These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1115#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 604 fasta sequence [CTCCTGAATTCATATTCAACTTATCAGAATGCAATTTCGTTCTACAATCGTTCTCGCACTTGTTGCCGTAATGTTGTTCGGTTTCTTCGCTGAAATTCAAGGTAATTACATACAACGTGGTACGTTTGGACGCANATTTGGTAGCTCAAGTAGCAGCAACCATGAATGGGGTAGCAGCTTTAAAGTTGGTCCAGGTGGACGTACAGAAGATGGATTTGAACGAGGAGGTTCAAAATCAGATAAATACGATNACACCGAANTTGAGGGCAACTTTGGTTCACCACGTAGATNTTATTAAACTGATTATCTNAGCGAAGAAACCATCGAAATACTTGTTTATTTGTTTGGAAATATGGAATGCTCAATAGCATGTAGTATAATGTGTTTTTTTGTTAAGAAATTAAAGAATCTTGATGAATAANATCTCTGTTATTAAATGAAACACAACAAAAAAAAACACAAAACACACACANNACAATCCAATACAACCGAACAAATAACATAATAGGAGAACACCAACAGGAAATAACACATCCCTGGGGGGGGGCCCGGTGCCCCTTTCCCCCAAATGTGAGGCAATTATACCGCCATCCCGGGCCCTGTT] [+] EMBL CA754636 [CTCCTGAATTCATATTCAACTTATCAGAATGCAATTTCGTTCTACAATCGTTCTCGCACTTGTTGCCGTAATGTTGTTCGGTTTCTTCGCTGAAATTCAAGGTAATTACATACAACGTGGTACGTTTGGACGCANATTTGGTAGCTCAAGTAGCAGCAACCATGAATGGGGTAGCAGCTTTAAAGTTGGTCCAGGTGGACGTACAGAAGATGGATTTGAACGAGGAGGTTCAAAATCAGATAAATACGATNACACCGAANTTGAGGGCAACTTTGGTTCACCACGTAGATNTTATTAAACTGATTATCTNAGCGAAGAAACCATCGAAATACTTGTTTATTTGTTTGGAAATATGGAATGCTCAATAGCATGTAGTATAATGTGTTTTTTTGTTAAGAAATTAAAGAATCTTGATGAATAANATCTCTGTTATTAAATGAAACACAACAAAAAAAAACACAAAACACACACANNACAATCCAATACAACCGAACAAATAACATAATAGGAGAACACCAACAGGAAATAACACATCCCTGGGGGGGGGCCCGGTGCCCCTTTCCCCCAAATGTGAGGCAATTATACCGCCATCCCGGGCCCTGTT] consensusID : consensus_1115#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 597 fasta sequence [CCTCCTGAATTCATATTCAACTTATCAGAATGCAATTTCGTTCTACAATCGTTCTCGCACTTGTTGCCGTAATGTTGTTCGGTTTCTTCGCTGAAATTCAAGGTAATTACATACAACGTGGTACGTTTGGACGCAAATTTGGTAGCTCAAGTAGCAGCAACCATGAATGGGGTAGCAGCTTTAAAGTTGGTCCAGGTGGACGTACAGAAGATGGATTTGAACGAGGAGGTTCAAAATCAGATAAATACGATAACACCGAAATTGAGGGCAACTTTGGTTCACCACGTAGATATTATTAAACTGATTATCTAAGCGAAGAAACCATCGAAATACTTGTTTATTTGTTTGGAAATATGGAATGCTCAATAGCATGTAGTATAATGTGTTTTTTTGTTAAGAAATTAAAGAATCTTGATGAATAAAATCTCTGTTATTAAATGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN] [+] EMBL CA756480 [CCTCCTGAATTCATATTCAACTTATCAGAATGCAATTTCGTTCTACAATCGTTCTCGCACTTGTTGCCGTAATGTTGTTCGGTTTCTTCGCTGAAATTCAAGGTAATTACATACAACGTGGTACGTTTGGACGCAAATTTGGTAGCTCAAGTAGCAGCAACCATGAATGGGGTAGCAGCTTTAAAGTTGGTCCAGGTGGACGTACAGAAGATGGATTTGAACGAGGAGGTTCAAAATCAGATAAATACGATAACACCGAAATTGAGGGCAACTTTGGTTCACCACGTAGATATTATTAAACTGATTATCTAAGCGAAGAAACCATCGAAATACTTGTTTATTTGTTTGGAAATATGGAATGCTCAATAGCATGTAGTATAATGTGTTTTTTTGTTAAGAAATTAAAGAATCTTGATGAATAAAATCTCTGTTATTAAATGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1115#0 -CTCCTGAATTCATATTCAACTTATCAGAATGCAATTTCGTTCTACAATCGTTCTCGCAC 59 consensus_1115#1 CCTCCTGAATTCATATTCAACTTATCAGAATGCAATTTCGTTCTACAATCGTTCTCGCAC 60 *********************************************************** consensus_1115#0 TTGTTGCCGTAATGTTGTTCGGTTTCTTCGCTGAAATTCAAGGTAATTACATACAACGTG 119 consensus_1115#1 TTGTTGCCGTAATGTTGTTCGGTTTCTTCGCTGAAATTCAAGGTAATTACATACAACGTG 120 ************************************************************ consensus_1115#0 GTACGTTTGGACGCANATTTGGTAGCTCAAGTAGCAGCAACCATGAATGGGGTAGCAGCT 179 consensus_1115#1 GTACGTTTGGACGCAAATTTGGTAGCTCAAGTAGCAGCAACCATGAATGGGGTAGCAGCT 180 *************** ******************************************** consensus_1115#0 TTAAAGTTGGTCCAGGTGGACGTACAGAAGATGGATTTGAACGAGGAGGTTCAAAATCAG 239 consensus_1115#1 TTAAAGTTGGTCCAGGTGGACGTACAGAAGATGGATTTGAACGAGGAGGTTCAAAATCAG 240 ************************************************************ consensus_1115#0 ATAAATACGATNACACCGAANTTGAGGGCAACTTTGGTTCACCACGTAGATNTTATTAAA 299 consensus_1115#1 ATAAATACGATAACACCGAAATTGAGGGCAACTTTGGTTCACCACGTAGATATTATTAAA 300 *********** ******** ****************************** ******** consensus_1115#0 CTGATTATCTNAGCGAAGAAACCATCGAAATACTTGTTTATTTGTTTGGAAATATGGAAT 359 consensus_1115#1 CTGATTATCTAAGCGAAGAAACCATCGAAATACTTGTTTATTTGTTTGGAAATATGGAAT 360 ********** ************************************************* consensus_1115#0 GCTCAATAGCATGTAGTATAATGTGTTTTTTTGTTAAGAAATTAAAGAATCTTGATGAAT 419 consensus_1115#1 GCTCAATAGCATGTAGTATAATGTGTTTTTTTGTTAAGAAATTAAAGAATCTTGATGAAT 420 ************************************************************ consensus_1115#0 AANATCTCTGTTATTAAATGAAACACAACAAAAAAAAACACAAAACACACACANNACAAT 479 consensus_1115#1 AAAATCTCTGTTATTAAATGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 480 ** ****************** ** consensus_1115#0 CCAATACAACCGAACAAATAACATAATAGGAGAACACCAACAGGAAATAACACATCCCTG 539 consensus_1115#1 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 540 consensus_1115#0 GGGGGGGGCCCGGTGCCCCTTTCCCCCAAATGTGAGGCAATTATACCGCCATCCCGGGCC 599 consensus_1115#1 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN--- 597 consensus_1115#0 CTGTT 604 consensus_1115#1 ----- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||