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Oryza sativa
cluster # 11152 cluster # 11152       Sequences # 8       consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_11152#0 length = 2617 sequences # 6  
 consensus_11152#1 length = 680 sequences # 1  
consensus_11152#2 length = 189 sequences # 1  
consensusID : consensus_11152#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 2617
fasta sequence 
                              [ACGCACACGCACACCACACAGTCTACCTATACCTACTACTACCTGTCATCTTCTCCTTCTTAATCCCAACTAAATGCGCACATAAACGAAGAAGATTTGCACTGATACCCGCGCTGATACAAGCAAGCATCCGCCGTTGCGACGGGTGGGCCTGACGCCGCGTGGGAGGCCGTGGCGGCGGGGGTGCTGCGGCCGGAGCACCCGCACGCGCTCCACCAGCTCGTCTACTACTCCGTCTACGCCGGCTGGGATCGCGCCGCCCGGGGCCCGCCGCCGTACTGGTTCCCGTCACAGATTGACACTAAACAAACAAATCTTGGTAGACTGATGGAAGCACATGGTCCTAGGTTGTTAGGATCATCATATAAGGACCCAGTTTCAAGTTTTCACCTCTTCCACAAGTTCTCCGTAGAGCATCAAGAGTCTATCCTTTGTTAGGTCTACTGGTCAATGGTGCTGAAGGAGATCTCAATCAAGTTCCAACAAGAACCAAAGTCAATTCTAGATACATCAGATAAATCAAGGAAAGGGGGAACATGGCTCCAAGGTGCTGTGCTTAATATTGCTGAATGTTGTCTGTTACCTTGGCCTTCCCAAAACAGGACAGATGACAGCACAGCTATTGTTTGGAGGGATGAGGGTCTTGACAATCACCCAGTGAACCGTATGTCACTGAAGGAGCTTCACAATCAAGTGATTACAGTTGCTACTGCGCTTGATACCATGTTCCAAAAGGGGGATCGAATTGCAATAGACATGCCTATGACATGCAATGCAGTCATCATATATTTGGCTATTGTCCTTGGTGGTTTTGTTGTTGTGTCGATAGCAGACAGTTTTGCACCTCAGGAGATTGGTACACGCATGAGTGTGTCAAAGGCGAAAGCTATTTTTACTCAGGATTTCATAATTAGAGGAGGGAAGAAGGTTCCACTATACAGCCGTGTTGTGCAAGGGACTTCATCTAAAGCTGTTGTAATTCCTGCAACTGGAGGCTTTCTTGGGGTTTCACTAAGGAATGGTGATATGTCCTGGAAAGATTTCCTTTCTTGTGCTGCTGGAAGGTCGTCCATTTATCCCACAGTTTATCAACCTTCAGACGCTCTAACTAATATACTATTTTCTTCAGGGACAACTGGAGAACCAAAAGCTATCCCATGGTCACAACTTTCTCCAATAAGATGCACATGTGATACATGGGCGCATTTGGATATCCAGCCACAGGACATATTTTGTTGGCCTACTAATCTTGGATGGGTTATGGGGCCTATACTCTTGTACTCATGCTTTTTAAGTGGTGCAACGTTGGCTTTGTATCATGGGTCACCACTTGGTCGTGGTTTTTGCAAGTTTGTACAGGATGCTGGTGTCACTATATTAGGAAGTGTACCTAGCTTAGTGAAGTCATGGAAAGCTGGGAATTTTACTGAAGGGCTTCACTGGACCAAAATCAGGGTACTCTCCACGACAGGAGAGGCTTCTGATATTGATGATGATCTATGGCTATCTTCGCGTGCCTCTTACAAGCCCATTATTGAATGTTGTGGGGGTACTGAGCTGGCATCGTCATACATTCAAGGCAGTCTTCTGCGTTCGCAAGCTTTTGGAGCTTTTAGTGGTGCATCCATGTCCACTGGGTTTGTCATACTTGATGAACAAGGAACTCCATATCCTGATGATGTACCTTGTGCTGGAGAAGTGGGCCTCTTCCCTTTATATTTTGGCGCTACAGATCGACTTCTCAATGCTGACAACAATAAGGTTTATTTTGATGGAATGCCCATTTACAATGGAAGGCAACTTCGACGGCATGGAGATATAATCCAAAGGACAGTAGGTGGTTACTATATTGTGCAGGGAAGAGCAGATGACACTATGAATCTTGGAGGAATTAAGACAAGTTCCGTGGAAATAGAGCGGATATGTAATAGAGCCGATGAGGCTCTACTAGAAACAGCAGCGGTTAGCATCAAACCTGCTGGTGGGGGACCAGAACAGCTGGCTATCTTGGCTGTGCTAAAAGATAGATCACCACCATGTGATGCAAATGTTCTCAAGAGCAAATTTCAGAGAGCCATCCAAAAGAACTTAAATCCTCTTTTCAAGGTGAGCTATGTCAAAATAGTTCCTGAGTTCCCAAGAACAGCTTCAAACAAGCTGCTAAGAAGAGTACTGAGGGATCAGCTGAGCAAAGAACTCTCGAATCGCAGCAAGCTATGACCGACGTGACATATTCAACAAGGACCACAACAACAACAACAATAGTAGACTTTAGTCCAAAGCAAGGTAGAGATGAAGAGCCATACGAACAGTGAGGGTAATTCAAAATCGCTTCAAAAATGCCCTCTTGCTTGTCAAATGGTAATATTGAATTATGAGTGTGTCAAAAAAAAAACAGCCACTTGAATAAAGAGTCATGATTCATTGGGGGCGTATAGAGAACTTCAGGAAACTATTTTTTTCCATGTTAATAAATGTTGTTGAATTGTGAGCATGTTCAATAGGCAACGGCTTGAAAAAGTGACATTTCCCGATGGGAATTTGTAGAGAACTTCAGAATACTCATCGCTGTACTGTATTATGTTCAGCTCATGATAAAGTGGTGGCATGGTGTTTG]

[+] EMBL AK067857             [ACGCACACGCACACCACACAGTCTACCTATACCTACTACTACCTGTCATCTTCTCCTTCTTAATCCCAACTAAATGCGCACATAAACGAAGAAGATTTGCACTGATACCCGCGCTGATACAAGCAAGCATCCGCCGTTGCGACGGGTGGGCCTGACGCCGCGTGGGAGGCCGTGGCGGCGGGGGTGCTGCGGCCGGAGCACCCGCACGCGCTCCACCAGCTCGTCTACTACTCCGTCTACGCCGGCTGGGATCGCGCCGCCCGGGGCCCGCCGCCGTACTGGTTCCCGTCACAGATTGACACTAAACAAACAAATCTTGGTAGACTGATGGAAGCACATGGTCCTAGGTTGTTAGGATCATCATATAAGGACCCAGTTTCAAGTTTTCACCTCTTCCACAAGTTCTCCGTAGAGCATCAAGAGTCTATCCTTTGTTAGGTCTACTGGTCAATGGTGCTGAAGGAGATCTCAATCAAGTTCCAACAAGAACCAAAGTCAATTCTAGATACATCAGATAAATCAAGGAAAGGGGGAACATGGCTCCAAGGTGCTGTGCTTAATATTGCTGAATGTTGTCTGTTACCTTGGCCTTCCCAAAACAGGACAGATGACAGCACAGCTATTGTTTGGAGGGATGAGGGTCTTGACAATCACCCAGTGAACCGTATGTCACTGAAGGAGCTTCACAATCAAGTGATTACAGTTGCTACTGCGCTTGATACCATGTTCCAAAAGGGGGATCGAATTGCAATAGACATGCCTATGACATGCAATGCAGTCATCATATATTTGGCTATTGTCCTTGGTGGTTTTGTTGTTGTGTCGATAGCAGACAGTTTTGCACCTCAGGAGATTGGTACACGCATGAGTGTGTCAAAGGCGAAAGCTATTTTTACTCAGGATTTCATAATTAGAGGAGGGAAGAAGGTTCCACTATACAGCCGTGTTGTGCAAGGGACTTCATCTAAAGCTGTTGTAATTCCTGCAACTGGAGGCTTTCTTGGGGTTTCACTAAGGAATGGTGATATGTCCTGGAAAGATTTCCTTTCTTGTGCTGCTGGAAGGTCGTCCATTTATCCCACAGTTTATCAACCTTCAGACGCTCTAACTAATATACTATTTTCTTCAGGGACAACTGGAGAACCAAAAGCTATCCCATGGTCACAACTTTCTCCAATAAGATGCACATGTGATACATGGGCGCATTTGGATATCCAGCCACAGGACATATTTTGTTGGCCTACTAATCTTGGATGGGTTATGGGGCCTATACTCTTGTACTCATGCTTTTTAAGTGGTGCAACGTTGGCTTTGTATCATGGGTCACCACTTGGTCGTGGTTTTTGCAAGTTTGTACAGGATGCTGGTGTCACTATATTAGGAAGTGTACCTAGCTTAGTGAAGTCATGGAAAGCTGGGAATTTTACTGAAGGGCTTCACTGGACCAAAATCAGGGTACTCTCCACGACAGGAGAGGCTTCTGATATTGATGATGATCTATGGCTATCTTCGCGTGCCTCTTACAAGCCCATTATTGAATGTTGTGGGGGTACTGAGCTGGCATCGTCATACATTCAAGGCAGTCTTCTGCGTTCGCAAGCTTTTGGAGCTTTTAGTGGTGCATCCATGTCCACTGGGTTTGTCATACTTGATGAACAAGGAACTCCATATCCTGATGATGTACCTTGTGCTGGAGAAGTGGGCCTCTTCCCTTTATATTTTGGCGCTACAGATCGACTTCTCAATGCTGACAACAATAAGGTTTATTTTGATGGAATGCCCATTTACAATGGAAGGCAACTTCGACGGCATGGAGATATAATCCAAAGGACAGTAGGTGGTTACTATATTGTGCAGGGAAGAGCAGATGACACTATGAATCTTGGAGGAATTAAGACAAGTTCCGTGGAAATAGAGCGGATATGTAATAGAGCCGATGAGGCTCTACTAGAAACAGCAGCGGTTAGCATCAAACCTGCTGGTGGGGGACCAGAACAGCTGGCTATCTTGGCTGTGCTAAAAGATAGATCACCACCATGTGATGCAGATGTTCTCAAGAGCAAATTTCAGAGAGCCATCCAAAAGAACTTAAATCCTCTTTTCAAGGTGAGCTATGTCAAAATAGTTCCTGAGTTCCCAAGAACAGCTTCAAACAAGCTGCTAAGAAGAGTACTGAGGGATCAGCTGAGCAAAGAACTCTCGAATCGCAGCAAGCTATGACCGACGTGACATATTCAACAAGGACCACAACAACAACAACAATAGTAGACTTTAGTCCAAAGCAAGGTAGAGATGAAGAGCCATACGAACAGTGAGGGTAATTCAAAATCGCTTCAAAAATGCCCTCTTGCTTGTCAAATGGTAATATTGAATTATGAGTGTGTCAAAAAAAAAACAGCCACTTGAATAAAGAGTCATGATTCATTGGGGGCGTATAGAGAACTTCAGGAAACTATTTTTTTCCATGTTAATAAATGTTGTTGAATTGTGAGCATGTTCAATAGGCAACGGCTTGAAAAAGTGACATTTCCCGATGGGAATTTGTAGAGAACTTCAGAATACTCATCGCTGTACTGTATTATGTTCAGCTCATGATAAAGTGGTGGCATGG      ]
[+] EMBL CB675084             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            CAGATGACAGCACAGCTATTGTTTGGAGGGATGAGGGTCTTGACAATCACCCAGTGAACCGTATGTCACTGAAGGAGCTTCACAATCAAGTGATTACAGTTGCTACTGCGCTTGATACCATGTTCCAAAAGGGGGATCGAATTGCAATAGACATGCCTATGACATGCAATGCAGTCATCATATATTTGGCTATTGTCCTTGGTGGTTTTGTTGTTGTGTCGATAGCAGACAGTTTTGCACCTCAGGAGATTGGTACACGCATGAGTGTGTCAAAGGCGAAAGCTATTTTTACTCAGGATTTCATAATTAGAGGAGGGAAGAAGGTTCCACTATACAGCCGTGTTGTGCAAGGGACTTCATCTAAAGCTGTTGTAATTCCTGCAACTGGAGGCTTTCTTGGGGTTTCACTAAGGAATGGTGATATGTCCTGGAAAGATTTCCTTTCTTGTGCTGCTGGAAGGTCGTCCATTTATCCCACAGTTTATCAACCTTCAGACGCTCTAACTAATATACTATTTTCTTCAGGGACAACTGGAGAACCAAAAGCTATCCCATGGTCACAACTTTCTCCAATAAGATGCACATGTGATACATGGGCGCATTTGGATATCCAGCCACAGGACATATTTTGTTGGCCTACTAATCTTGGATGGGTTATGGGGCCTATACTCTTGTACTCATGCTTTTTAAGTGGTGCAACGTTGGCTTTGTATCATGGGTCACCACTTGGTCGTGGTTTTTGCAAGTTTGTACAGGATGCTGGTGTCACTATATTAGGAAGTGTACCTAGCTTAGTGAAGTCATGGAAAGCTGG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL OSA302309            [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            GTCCACTGGGTTTGTCATACTTGATGAATAAGGAACTCCATATCCTGATGATGTACCTTGTGCTGGAGAAGTGGGCCTCTTCCCTTTATA TTTGGCGCTACAGATCGACTTCTCAATGCTGACAACAATAAGGTTTGTTTTGATGGAATGCCCATTTACAATGGAAGGCAACTTCGACGGCATGGAGATATAATCCAAAGGACAGTAGGTGGTTACTATATTGTGCAGGGAAGAGCAGATGACACTATGAATCTTGGAGGAATTAAGACAAGTTCCGTGGAAATAGAGCGGATATGTAATAGACCCGATGAGGCTCTACTAGAAACAGCAGCGGTTAGCATCAAACCTCGTGG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[-] EMBL CB675085             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         AGATGACACTATGAATCTTGGAGGAATTAAGACAAGTTCCGTGGAAATAGAGCGGATATGTAATAGAGCCGATGAGGCTCTACTAGAAACAGCAGCGGTTAGCATCAAACCTGCTGGTGGGGGACCAGAACAGCTGGCTATCTTGGCTGTGCTAAAAGATAGATCACCACCATGTGATGCAAATGTTCTCAAGAGCAAATTTCAGAGAGCCATCCAAAAGAACTTAAATCCTCTTTTCAAGGTGAGCTATGTCAAAATAGTTCCTGAGTTCCCAAGAACAGCTTCAAACAAGCTGCTAAGAAGAGTACTGAGGGATCAGCTGAGCAAAGAACTCTCGAATCGCAGCAAGCTATGACCGACGTGACATATTCAACAAGGACCACAACAACAACAACAATAGTAGACTTTAGTCCAAAGCAAGGTAGAGATGAAGAGCCATACGAACAGTGAGGGTAATTCAAAATCGCTTCAAAAATGCCCTCTTGCTTGTCAAATGGTAATATTGAATTATGAGTGTGTCAAAAAAAAAACAGCCACTTGAATAAAGAGTCATGATTCATTGGGGGCGTATAGAGAACTTCAGGAAACTATTTTTTTCCATGTTAATAAATGTTGTTGAATTGTGAGCATGTTCAATAGGCAACGGCTTGAAAAAGTGACATTTCCCGATGGGAATTTGTAGAGAACTTCAGAATACTCATCGCTGTACTGTATTATGTTCAGGTCATGATAAAGTGGTGGCATGGT     ]
[+] EMBL AU065908             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    GGCTCTACTAGAAACAGCAGCGGTTAGCATCAAACCTGCTGGTGGGGGACCAGAACAGCTGGCTATCTTGGCTGTGCTAAAAGATAGATCACCACCATGTGATGCAAATGTTCTCAAGAGCAAATTTCAGAGAGCCATCCAAAAGAACTTAAATCCTCTTTTCAAGGTGAGCTATGTCAAAATAGTTCCTGAGTTCCCAAGAACAGCTTCAAACAAGCTGCTAAGAAGAGTACTGAGGGATCAGCTGAGCAAAGAACTCTCGAATCGCAGCAAGCTATGACCGACGTGACATATTCAACAAGGACCACAACAACAACACCAATAGTAGACTTTAGTCCAAAGCAAGGTAGAGATGAGGAGCCATACGGACAGTNAGGGTAATTCAAAATCGCTTTCAAAATGCCCTCTTGCTTGTCAATNGGTAATATTGAATTATGNGTGTGTCAAAAAAAAAACAGCCNTTTGATTAAgggn                                                                                                                                                                                                           ]
[-] EMBL D42370               [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          AGCCAT CGAACAGTGAGGGTAATTCAAAATCGCTTCAAAAATGCCCTCTTGCTTGTCAAATGGTAATATTGAATTATGAGTGTGTCAAAAAAAAAACAGCCACTTGAATAAAGAGTCATGATTCATTGGGGGCGTATAGAGAACTTCAGGAAACTATTTTTTTCCATGTTAATAAATGTTGTTGAATTGTGAGCATGTTCAATAGGCAACGGCTTGAAAAAGTGACATTT CCGATGGGAATTTGTAGAGAACTTCAGAATACTCATCGCTGTACTGTATTATGTTCAGCTCATGATAAAGTGGTGGCATGGTGTTTG]




>consensus_11152#0
ACGCACACGCACACCACACAGTCTACCTATACCTACTACTACCTGTCATCTTCTCCTTCT
TAATCCCAACTAAATGCGCACATAAACGAAGAAGATTTGCACTGATACCCGCGCTGATAC
AAGCAAGCATCCGCCGTTGCGACGGGTGGGCCTGACGCCGCGTGGGAGGCCGTGGCGGCG
GGGGTGCTGCGGCCGGAGCACCCGCACGCGCTCCACCAGCTCGTCTACTACTCCGTCTAC
GCCGGCTGGGATCGCGCCGCCCGGGGCCCGCCGCCGTACTGGTTCCCGTCACAGATTGAC
ACTAAACAAACAAATCTTGGTAGACTGATGGAAGCACATGGTCCTAGGTTGTTAGGATCA
TCATATAAGGACCCAGTTTCAAGTTTTCACCTCTTCCACAAGTTCTCCGTAGAGCATCAA
GAGTCTATCCTTTGTTAGGTCTACTGGTCAATGGTGCTGAAGGAGATCTCAATCAAGTTC
CAACAAGAACCAAAGTCAATTCTAGATACATCAGATAAATCAAGGAAAGGGGGAACATGG
CTCCAAGGTGCTGTGCTTAATATTGCTGAATGTTGTCTGTTACCTTGGCCTTCCCAAAAC
AGGACAGATGACAGCACAGCTATTGTTTGGAGGGATGAGGGTCTTGACAATCACCCAGTG
AACCGTATGTCACTGAAGGAGCTTCACAATCAAGTGATTACAGTTGCTACTGCGCTTGAT
ACCATGTTCCAAAAGGGGGATCGAATTGCAATAGACATGCCTATGACATGCAATGCAGTC
ATCATATATTTGGCTATTGTCCTTGGTGGTTTTGTTGTTGTGTCGATAGCAGACAGTTTT
GCACCTCAGGAGATTGGTACACGCATGAGTGTGTCAAAGGCGAAAGCTATTTTTACTCAG
GATTTCATAATTAGAGGAGGGAAGAAGGTTCCACTATACAGCCGTGTTGTGCAAGGGACT
TCATCTAAAGCTGTTGTAATTCCTGCAACTGGAGGCTTTCTTGGGGTTTCACTAAGGAAT
GGTGATATGTCCTGGAAAGATTTCCTTTCTTGTGCTGCTGGAAGGTCGTCCATTTATCCC
ACAGTTTATCAACCTTCAGACGCTCTAACTAATATACTATTTTCTTCAGGGACAACTGGA
GAACCAAAAGCTATCCCATGGTCACAACTTTCTCCAATAAGATGCACATGTGATACATGG
GCGCATTTGGATATCCAGCCACAGGACATATTTTGTTGGCCTACTAATCTTGGATGGGTT
ATGGGGCCTATACTCTTGTACTCATGCTTTTTAAGTGGTGCAACGTTGGCTTTGTATCAT
GGGTCACCACTTGGTCGTGGTTTTTGCAAGTTTGTACAGGATGCTGGTGTCACTATATTA
GGAAGTGTACCTAGCTTAGTGAAGTCATGGAAAGCTGGGAATTTTACTGAAGGGCTTCAC
TGGACCAAAATCAGGGTACTCTCCACGACAGGAGAGGCTTCTGATATTGATGATGATCTA
TGGCTATCTTCGCGTGCCTCTTACAAGCCCATTATTGAATGTTGTGGGGGTACTGAGCTG
GCATCGTCATACATTCAAGGCAGTCTTCTGCGTTCGCAAGCTTTTGGAGCTTTTAGTGGT
GCATCCATGTCCACTGGGTTTGTCATACTTGATGAACAAGGAACTCCATATCCTGATGAT
GTACCTTGTGCTGGAGAAGTGGGCCTCTTCCCTTTATATTTTGGCGCTACAGATCGACTT
CTCAATGCTGACAACAATAAGGTTTATTTTGATGGAATGCCCATTTACAATGGAAGGCAA
CTTCGACGGCATGGAGATATAATCCAAAGGACAGTAGGTGGTTACTATATTGTGCAGGGA
AGAGCAGATGACACTATGAATCTTGGAGGAATTAAGACAAGTTCCGTGGAAATAGAGCGG
ATATGTAATAGAGCCGATGAGGCTCTACTAGAAACAGCAGCGGTTAGCATCAAACCTGCT
GGTGGGGGACCAGAACAGCTGGCTATCTTGGCTGTGCTAAAAGATAGATCACCACCATGT
GATGCAAATGTTCTCAAGAGCAAATTTCAGAGAGCCATCCAAAAGAACTTAAATCCTCTT
TTCAAGGTGAGCTATGTCAAAATAGTTCCTGAGTTCCCAAGAACAGCTTCAAACAAGCTG
CTAAGAAGAGTACTGAGGGATCAGCTGAGCAAAGAACTCTCGAATCGCAGCAAGCTATGA
CCGACGTGACATATTCAACAAGGACCACAACAACAACAACAATAGTAGACTTTAGTCCAA
AGCAAGGTAGAGATGAAGAGCCATACGAACAGTGAGGGTAATTCAAAATCGCTTCAAAAA
TGCCCTCTTGCTTGTCAAATGGTAATATTGAATTATGAGTGTGTCAAAAAAAAAACAGCC
ACTTGAATAAAGAGTCATGATTCATTGGGGGCGTATAGAGAACTTCAGGAAACTATTTTT
TTCCATGTTAATAAATGTTGTTGAATTGTGAGCATGTTCAATAGGCAACGGCTTGAAAAA
GTGACATTTCCCGATGGGAATTTGTAGAGAACTTCAGAATACTCATCGCTGTACTGTATT
ATGTTCAGCTCATGATAAAGTGGTGGCATGGTGTTTG

consensusID : consensus_11152#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 680
fasta sequence 
                              [GTGGTTACTATATTGTGCAGGGAAGAGCAGATGACACTTTGAATCTTGGAGGAATTAAGACAAGTTCCGTGGAAATAGAGNGGATATGTAATAGAGCCGATGAGGCTCTACTAGAAACAGCAGCGGTTAGCATCAAACCTGCTGGTGGGGGACCAGAACAGCTGGCTATCTTGGCTGTGCTAAAAGATAGATCCCCACCCATGTGATGCAAATGTTCTCAAGAGCAAATTTCAGAGAGCCATCCAAAAGAACTTAAATCCTCTTTTCAAGGTGAGCTATGTCAAAATAGTTCCTGAGTTCCCAAGAACAGCTTCAAACAAGCTGCTAAGAAGAGTACTGAGGGATCAGCTGAGCAAAGAACTCTCGAATCGCAGCAAGCTATGACCGACGTGACATATTCAACAAGGGCCCCAACAACAACAACAATAGTAGACTTTAGTCCAAAGCAAGGTAGAGATGAAGAGCCATTCGAACAGTGAGGGTAATTCAAAATCGCTTCAAAAATGCCCTCTTGCTTGTCAAATGGTAATATTGAATTATGAGTGTGGCAAAAAAAAAACAGCCCCTTGAATAAAGAGTCATGATTCATTGGGGGCGTATAGAGAACTTCAGGAAACTATTTTTTTCCATGTTAATAAATGTTGTTGAATTGTGAGCATGTTCAAAAAAAAAAAAAAAAA]

[-] EMBL CA762075             [GTGGTTACTATATTGTGCAGGGAAGAGCAGATGACACTTTGAATCTTGGAGGAATTAAGACAAGTTCCGTGGAAATAGAGNGGATATGTAATAGAGCCGATGAGGCTCTACTAGAAACAGCAGCGGTTAGCATCAAACCTGCTGGTGGGGGACCAGAACAGCTGGCTATCTTGGCTGTGCTAAAAGATAGATCCCCACCCATGTGATGCAAATGTTCTCAAGAGCAAATTTCAGAGAGCCATCCAAAAGAACTTAAATCCTCTTTTCAAGGTGAGCTATGTCAAAATAGTTCCTGAGTTCCCAAGAACAGCTTCAAACAAGCTGCTAAGAAGAGTACTGAGGGATCAGCTGAGCAAAGAACTCTCGAATCGCAGCAAGCTATGACCGACGTGACATATTCAACAAGGGCCCCAACAACAACAACAATAGTAGACTTTAGTCCAAAGCAAGGTAGAGATGAAGAGCCATTCGAACAGTGAGGGTAATTCAAAATCGCTTCAAAAATGCCCTCTTGCTTGTCAAATGGTAATATTGAATTATGAGTGTGGCAAAAAAAAAACAGCCCCTTGAATAAAGAGTCATGATTCATTGGGGGCGTATAGAGAACTTCAGGAAACTATTTTTTTCCATGTTAATAAATGTTGTTGAATTGTGAGCATGTTCAAAAAAAAAAAAAAAAA]




>consensus_11152#1
GTGGTTACTATATTGTGCAGGGAAGAGCAGATGACACTTTGAATCTTGGAGGAATTAAGA
CAAGTTCCGTGGAAATAGAGNGGATATGTAATAGAGCCGATGAGGCTCTACTAGAAACAG
CAGCGGTTAGCATCAAACCTGCTGGTGGGGGACCAGAACAGCTGGCTATCTTGGCTGTGC
TAAAAGATAGATCCCCACCCATGTGATGCAAATGTTCTCAAGAGCAAATTTCAGAGAGCC
ATCCAAAAGAACTTAAATCCTCTTTTCAAGGTGAGCTATGTCAAAATAGTTCCTGAGTTC
CCAAGAACAGCTTCAAACAAGCTGCTAAGAAGAGTACTGAGGGATCAGCTGAGCAAAGAA
CTCTCGAATCGCAGCAAGCTATGACCGACGTGACATATTCAACAAGGGCCCCAACAACAA
CAACAATAGTAGACTTTAGTCCAAAGCAAGGTAGAGATGAAGAGCCATTCGAACAGTGAG
GGTAATTCAAAATCGCTTCAAAAATGCCCTCTTGCTTGTCAAATGGTAATATTGAATTAT
GAGTGTGGCAAAAAAAAAACAGCCCCTTGAATAAAGAGTCATGATTCATTGGGGGCGTAT
AGAGAACTTCAGGAAACTATTTTTTTCCATGTTAATAAATGTTGTTGAATTGTGAGCATG
TTCAAAAAAAAAAAAAAAAA

consensusID : consensus_11152#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 189
fasta sequence 
                              [GGTAGACTGATGGAAGCACATGGTCCTAGGTTGTTAGGATCATCATATAAGGACCCAGTTTCAAGTTTTCACCTCTTCCACAAGTTCTCCGTAGAGCATCAAGAGGTCTACTGGTCAATGGTGCTGAAGGAGATCTCAATCAAGTTCCCAACAAGAACCAAAGTCAATTCTAGATACATCAGATAAATC]

[+] EMBL C74906               [GGTAGACTGATGGAAGCACATGGTCCTAGGTTGTTAGGATCATCATATAAGGACCCAGTTTCAAGTTTTCACCTCTTCCACAAGTTCTCCGTAGAGCATCAAGAGGTCTACTGGTCAATGGTGCTGAAGGAGATCTCAATCAAGTTCCCAACAAGAACCAAAGTCAATTCTAGATACATCAGATAAATC]




>consensus_11152#2
GGTAGACTGATGGAAGCACATGGTCCTAGGTTGTTAGGATCATCATATAAGGACCCAGTT
TCAAGTTTTCACCTCTTCCACAAGTTCTCCGTAGAGCATCAAGAGGTCTACTGGTCAATG
GTGCTGAAGGAGATCTCAATCAAGTTCCCAACAAGAACCAAAGTCAATTCTAGATACATC
AGATAAATC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_11152#0      ACGCACACGCACACCACACAGTCTACCTATACCTACTACTACCTGTCATCTTCTCCTTCT 60
consensus_11152#2      ------------------------------------------------------------
consensus_11152#1      ------------------------------------------------------------
                                                                                   

consensus_11152#0      TAATCCCAACTAAATGCGCACATAAACGAAGAAGATTTGCACTGATACCCGCGCTGATAC 120
consensus_11152#2      ------------------------------------------------------------
consensus_11152#1      ------------------------------------------------------------
                                                                                   

consensus_11152#0      AAGCAAGCATCCGCCGTTGCGACGGGTGGGCCTGACGCCGCGTGGGAGGCCGTGGCGGCG 180
consensus_11152#2      ------------------------------------------------------------
consensus_11152#1      ------------------------------------------------------------
                                                                                   

consensus_11152#0      GGGGTGCTGCGGCCGGAGCACCCGCACGCGCTCCACCAGCTCGTCTACTACTCCGTCTAC 240
consensus_11152#2      ------------------------------------------------------------
consensus_11152#1      ---GTGGTTACTATATTGTGCAGGGAAGAGCAGATGACACTTTGAATCTTGGAGGAATTA 57
                                                                                   

consensus_11152#0      GCCGGCTGGGATCGCGCCGCCCGGGGCCCGCCGCCGTACTGGTTCCCGTCACAGATTGAC 300
consensus_11152#2      ------------------------------------------------------------
consensus_11152#1      AGACAAGTTCCGTGGAAATAGAGNGGATATGTAATAGAGCCGATGAGGCTCTACTAGAAA 117
                                                                                   

consensus_11152#0      ACTAAACAAACAAATCTTGGTAGACTGATGGAAGCACATGGTCCTAGGTTGTTAGGATCA 360
consensus_11152#2      ------------------GGTAGACTGATGGAAGCACATGGTCCTAGGTTGTTAGGATCA 42
consensus_11152#1      CAGCAGCGGTTAGCATCAAACCTGCTGGTGGGGGACCAGAACAGCTGGCTATCTTGGCTG 177
                                               *** ***  *  **        ** * *   *    

consensus_11152#0      TCATATAAG---GACCCAGTTTCAAGT--TTTCACCTCTTCCACAAGT---TCTCCGTAG 412
consensus_11152#2      TCATATAAG---GACCCAGTTTCAAGT--TTTCACCTCTTCCACAAGT---TCTCCGTAG 94
consensus_11152#1      TGCTAAAAGATAGATCCCCACCCATGTGATGCAAATGTTCTCAAGAGCAAATTTCAGAGA 237
                       *  ** ***   ** **     ** **  *   *    *  **  **    * ** *   

consensus_11152#0      AGCATCAAGAGTCTATCCTTTGTTAGGTCTACTGGTCAATGGTGCTGAAG--------GA 464
consensus_11152#2      AGCATCAAGAG---------------GTCTACTGGTCAATGGTGCTGAAG--------GA 131
consensus_11152#1      GCCATCCAAAAGAACTTAAATCCTC-TTTTCAAGGTGAGCTATGTCAAAATAGTTCCTGA 296
                         **** * *                 * *   *** *    **   **         **

consensus_11152#0      GATCTCAATCA-AGTTCC-AACAAGAACCAAAGTCAATTCTAGATACATCAGATAAATCA 522
consensus_11152#2      GATCTCAATCA-AGTTCCCAACAAGAACCAAAGTCAATTCTAGATACATCAGATAAATC- 189
consensus_11152#1      GTTCCCAAGAACAGCTTCAAACAAGCTGCTAAGAAGAGTACTGAGGGATCAGCTGAGCAA 356
                       * ** ***  * ** * * ******   * ***   * *   **   ***** * *    

consensus_11152#0      AGGAAAGGGGGAACATGGCTCCAAGGTGCTGTGCTTAATATTGCTGAATGTTGTCTGTTA 582
consensus_11152#2      ------------------------------------------------------------
consensus_11152#1      AGAACTCTCGAATCGCAGCAAGCTATGACCGACGTGACATATTCAACAAGGGCCCCAACA 416
                                                                                   

consensus_11152#0      CCTTGGCCTTCCCAAAACAGGACAGATGACAGCACAGCTATTGTTTGGAGGGATGAGGGT 642
consensus_11152#2      ------------------------------------------------------------
consensus_11152#1      ACAACAACAATAGTAGACTTTAGTCCAAAGCAAGGTAGAGATGAAGAGCCATTCGAACAG 476
                                                                                   

consensus_11152#0      CTTGACAATCACCCAGTGAACCGTATGTCACTGAAGGAGCTTCACAATCAAGTGATTACA 702
consensus_11152#2      ------------------------------------------------------------
consensus_11152#1      TGAGGGTAATTCAAAATCGCTTCAAAAATGCCCTCTTGCTTGTCAAATGGTAATATTGAA 536
                                                                                   

consensus_11152#0      GTTGCTACTGCGCTTGATACCATGTTCCAAAAGGGGGATCGAATTGCAATAGACATGCCT 762
consensus_11152#2      ------------------------------------------------------------
consensus_11152#1      TTATGAGTGTGGCAAAAAAAAAACAGCCCCTTGAATAAAGAGTCATGATTCATTGGGGGC 596
                                                                                   

consensus_11152#0      ATGACATGCAATGCAGTCATCATATATTTGGCTATTGTCCTTGGTGGTTTTGTTGTTGTG 822
consensus_11152#2      ------------------------------------------------------------
consensus_11152#1      GTATAGAGAACTTCAGGAAACTATTTTTTTCCATGTTAATAAATGTTGTTGAATTGTGAG 656
                                                                                   

consensus_11152#0      TCGATAGCAGACAGTTTTGCACCTCAGGAGATTGGTACACGCATGAGTGTGTCAAAGGCG 882
consensus_11152#2      ------------------------------------------------------------
consensus_11152#1      CATGTTCAAAAAAAAAAAAAAAAA------------------------------------ 680
                                                                                   

consensus_11152#0      AAAGCTATTTTTACTCAGGATTTCATAATTAGAGGAGGGAAGAAGGTTCCACTATACAGC 942
consensus_11152#2      ------------------------------------------------------------
consensus_11152#1      ------------------------------------------------------------
                                                                                   

consensus_11152#0      CGTGTTGTGCAAGGGACTTCATCTAAAGCTGTTGTAATTCCTGCAACTGGAGGCTTTCTT 1002
consensus_11152#2      ------------------------------------------------------------
consensus_11152#1      ------------------------------------------------------------
                                                                                   

consensus_11152#0      GGGGTTTCACTAAGGAATGGTGATATGTCCTGGAAAGATTTCCTTTCTTGTGCTGCTGGA 1062
consensus_11152#2      ------------------------------------------------------------
consensus_11152#1      ------------------------------------------------------------
                                                                                   

consensus_11152#0      AGGTCGTCCATTTATCCCACAGTTTATCAACCTTCAGACGCTCTAACTAATATACTATTT 1122
consensus_11152#2      ------------------------------------------------------------
consensus_11152#1      ------------------------------------------------------------
                                                                                   

consensus_11152#0      TCTTCAGGGACAACTGGAGAACCAAAAGCTATCCCATGGTCACAACTTTCTCCAATAAGA 1182
consensus_11152#2      ------------------------------------------------------------
consensus_11152#1      ------------------------------------------------------------
                                                                                   

consensus_11152#0      TGCACATGTGATACATGGGCGCATTTGGATATCCAGCCACAGGACATATTTTGTTGGCCT 1242
consensus_11152#2      ------------------------------------------------------------
consensus_11152#1      ------------------------------------------------------------
                                                                                   

consensus_11152#0      ACTAATCTTGGATGGGTTATGGGGCCTATACTCTTGTACTCATGCTTTTTAAGTGGTGCA 1302
consensus_11152#2      ------------------------------------------------------------
consensus_11152#1      ------------------------------------------------------------
                                                                                   

consensus_11152#0      ACGTTGGCTTTGTATCATGGGTCACCACTTGGTCGTGGTTTTTGCAAGTTTGTACAGGAT 1362
consensus_11152#2      ------------------------------------------------------------
consensus_11152#1      ------------------------------------------------------------
                                                                                   

consensus_11152#0      GCTGGTGTCACTATATTAGGAAGTGTACCTAGCTTAGTGAAGTCATGGAAAGCTGGGAAT 1422
consensus_11152#2      ------------------------------------------------------------
consensus_11152#1      ------------------------------------------------------------
                                                                                   

consensus_11152#0      TTTACTGAAGGGCTTCACTGGACCAAAATCAGGGTACTCTCCACGACAGGAGAGGCTTCT 1482
consensus_11152#2      ------------------------------------------------------------
consensus_11152#1      ------------------------------------------------------------
                                                                                   

consensus_11152#0      GATATTGATGATGATCTATGGCTATCTTCGCGTGCCTCTTACAAGCCCATTATTGAATGT 1542
consensus_11152#2      ------------------------------------------------------------
consensus_11152#1      ------------------------------------------------------------
                                                                                   

consensus_11152#0      TGTGGGGGTACTGAGCTGGCATCGTCATACATTCAAGGCAGTCTTCTGCGTTCGCAAGCT 1602
consensus_11152#2      ------------------------------------------------------------
consensus_11152#1      ------------------------------------------------------------
                                                                                   

consensus_11152#0      TTTGGAGCTTTTAGTGGTGCATCCATGTCCACTGGGTTTGTCATACTTGATGAACAAGGA 1662
consensus_11152#2      ------------------------------------------------------------
consensus_11152#1      ------------------------------------------------------------
                                                                                   

consensus_11152#0      ACTCCATATCCTGATGATGTACCTTGTGCTGGAGAAGTGGGCCTCTTCCCTTTATATTTT 1722
consensus_11152#2      ------------------------------------------------------------
consensus_11152#1      ------------------------------------------------------------
                                                                                   

consensus_11152#0      GGCGCTACAGATCGACTTCTCAATGCTGACAACAATAAGGTTTATTTTGATGGAATGCCC 1782
consensus_11152#2      ------------------------------------------------------------
consensus_11152#1      ------------------------------------------------------------
                                                                                   

consensus_11152#0      ATTTACAATGGAAGGCAACTTCGACGGCATGGAGATATAATCCAAAGGACAGTAGGTGGT 1842
consensus_11152#2      ------------------------------------------------------------
consensus_11152#1      ------------------------------------------------------------
                                                                                   

consensus_11152#0      TACTATATTGTGCAGGGAAGAGCAGATGACACTATGAATCTTGGAGGAATTAAGACAAGT 1902
consensus_11152#2      ------------------------------------------------------------
consensus_11152#1      ------------------------------------------------------------
                                                                                   

consensus_11152#0      TCCGTGGAAATAGAGCGGATATGTAATAGAGCCGATGAGGCTCTACTAGAAACAGCAGCG 1962
consensus_11152#2      ------------------------------------------------------------
consensus_11152#1      ------------------------------------------------------------
                                                                                   

consensus_11152#0      GTTAGCATCAAACCTGCTGGTGGGGGACCAGAACAGCTGGCTATCTTGGCTGTGCTAAAA 2022
consensus_11152#2      ------------------------------------------------------------
consensus_11152#1      ------------------------------------------------------------
                                                                                   

consensus_11152#0      GATAGATCACCACCATGTGATGCAAATGTTCTCAAGAGCAAATTTCAGAGAGCCATCCAA 2082
consensus_11152#2      ------------------------------------------------------------
consensus_11152#1      ------------------------------------------------------------
                                                                                   

consensus_11152#0      AAGAACTTAAATCCTCTTTTCAAGGTGAGCTATGTCAAAATAGTTCCTGAGTTCCCAAGA 2142
consensus_11152#2      ------------------------------------------------------------
consensus_11152#1      ------------------------------------------------------------
                                                                                   

consensus_11152#0      ACAGCTTCAAACAAGCTGCTAAGAAGAGTACTGAGGGATCAGCTGAGCAAAGAACTCTCG 2202
consensus_11152#2      ------------------------------------------------------------
consensus_11152#1      ------------------------------------------------------------
                                                                                   

consensus_11152#0      AATCGCAGCAAGCTATGACCGACGTGACATATTCAACAAGGACCACAACAACAACAACAA 2262
consensus_11152#2      ------------------------------------------------------------
consensus_11152#1      ------------------------------------------------------------
                                                                                   

consensus_11152#0      TAGTAGACTTTAGTCCAAAGCAAGGTAGAGATGAAGAGCCATACGAACAGTGAGGGTAAT 2322
consensus_11152#2      ------------------------------------------------------------
consensus_11152#1      ------------------------------------------------------------
                                                                                   

consensus_11152#0      TCAAAATCGCTTCAAAAATGCCCTCTTGCTTGTCAAATGGTAATATTGAATTATGAGTGT 2382
consensus_11152#2      ------------------------------------------------------------
consensus_11152#1      ------------------------------------------------------------
                                                                                   

consensus_11152#0      GTCAAAAAAAAAACAGCCACTTGAATAAAGAGTCATGATTCATTGGGGGCGTATAGAGAA 2442
consensus_11152#2      ------------------------------------------------------------
consensus_11152#1      ------------------------------------------------------------
                                                                                   

consensus_11152#0      CTTCAGGAAACTATTTTTTTCCATGTTAATAAATGTTGTTGAATTGTGAGCATGTTCAAT 2502
consensus_11152#2      ------------------------------------------------------------
consensus_11152#1      ------------------------------------------------------------
                                                                                   

consensus_11152#0      AGGCAACGGCTTGAAAAAGTGACATTTCCCGATGGGAATTTGTAGAGAACTTCAGAATAC 2562
consensus_11152#2      ------------------------------------------------------------
consensus_11152#1      ------------------------------------------------------------
                                                                                   

consensus_11152#0      TCATCGCTGTACTGTATTATGTTCAGCTCATGATAAAGTGGTGGCATGGTGTTTG 2617
consensus_11152#2      -------------------------------------------------------
consensus_11152#1      -------------------------------------------------------


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)