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Oryza sativa
cluster # 11169 cluster # 11169       Sequences # 8       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_11169#0 length = 1961 sequences # 5  
consensus_11169#1 length = 1282 sequences # 2  
consensus_11169#2 length = 312 sequences # 1  

consensusID : consensus_11169#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 1961
fasta sequence
                              [CTAAAATTGGTGAAAATTCACTCGAATCCAAATGTAAACAACCCATTTTTCTCCTGTTCCAATCCCATCCATTCCATTCCATTCCTTCTCCCTGTGCTCGGATTCCTGTTCTTGCAGCTGATCCCTAGATCTTCCTCTTTGCCCGAGAATTTTCCGCCCAATTCCCCACTCCGATTCCTCTTCTTTCGCCCAAATTTTGGCTCAACATTTCGCAGCGCAATCTCGAGCTGAATCTTGGGGGGTAAAGCTTTGCTTCTTGGAATCTTGGTGCGGTTTTTGGGGGAGATTTGCGAGCGTTTGGAGCCGAGAAGATGAACAGGGAGAAATCCCCGATCCCGGGAGACGGCGGCGACGGGTTGCCGCCGCAGGCCACCCGCCGGGCGGGCCCTCCGGCGGCGGCGGCGGCGGCGGAGTACGACATCAGCCGCATGCCGGATTTCCCGACGAGGAACCCCGGCCACAGGCGCGCCCACTCCGAGATCCTGAGCCTCCCCGAGGACCTCGACCTGTGCGCGGCCGGCGGCGGCGACGGGCCGTCGCTGTCGGACGAGAACGACGAGGAGCTCTTCTCCATGTTCCTCGACGTGGAGAAGCTGAACAGCACGTGCGGGGCGTCGTCGGAGGCGGAGGCGGAGTCGTCGTCCGCCGGCGCCGCGGCGGCGGTGGCGGCGGCGGCCGCCGCCGCCGCCCATGGAGCGAGGCCGAAGCACCAGCACAGCCTGTCCATGGATGAGTCGATGTCGATCAAGGCTGAGGAGCTCGTCGGGGCGTCGCCCGGGACGGAGGGGATGTCGTCGGCGGAGGCCAAGAAGGCCGTGTCCGCGGCCAAGCTCGCCGAGCTTGCTCTCGTCGATCCCAAGAGGGCGAAAAGGATTTGGGCTAACAGACATCTGCGGCAAGATCAAAGGAAAGGAAAATGCGATATATTGCTGAACTTGAGCGCAAGGTGCAAACCCTGCAAACAGAAGCAACAACACTGTCAGCCCAGTTGGCACTGCTACAGAGAGATACCAGTGGGCTAACTACTGAGAATAGTGAACTGAAGCTACGTCTGCAGACCATGGAGCAGCAAGTCCACTTGCAAGATGCTTTGAATGACACCCTGAAGTCTGAGGTTCAGCGGCTTAAGGTTGCAACCGGTCAAATGGCGAATGGTGGAGGGATGATGATGAACTTCGGTGGCATGCCACACCAATTCGGAGGCAACCAGCAGATGTTCCAGAACAACCAGGCCATGCAATCTATGCTGGCAGCACACCAGCTGCAACAGCTCCAGCTTCATCCTCAGGCTCAGCAGCAGCAGGTGCTGCACCCTCAGCATCAGCAGCAGCAGCCATTGCACCCTCTACAAGCGCAGCAGCTCCAGCAGGCGGCACGAGACCTCAAGATGAAATCGCCGATGGGCGGCCAGAGCCAGTGGGGAGATGGCAAGTCAGGAAGCAGCGGCAACTGATGCGTCATTTACAAATTTACAAAAAAATTCCCCAAAGTTTCGGTGTAAGGTTGTGGTTTAACAACCATGGAGATGGTCTGTTTCATTGAGATGATGATGATGTGCAAGAGTAGTTATCATCATCATCATCGGTAGGTTCAGGTTGGCTTCAGCTTCAGTCATACAGTTGGGTGGATGTTCAGTTGAAGAGTTTATCTGTAGCTGGTTCAGTAAGGAAATGGTCGAATAATCAAGAATTCCAGGTTAAAATCTTTCGTTTCTTTGGTAAGGTAGCACATCACCAAGATGTACTGTTGTAGTGTTGTCTACAGTTCCATAAATTCAAGTAGCCAGTATACGCTGTTGTTTAGTTTTTCTCCGGTTTTTTAGAGGTAGAGGCGTTTCTAGTGTTAATCGAGAGGTATACTGTATACCTTCTGATTAACATGTAAATCACTCAACACCTCTACCTCCATAAGGACCGGAGAAAAACTCAATTGTTTAATTAAGATGCCATTCATGACTAGAT]

[+] EMBL CA755956             [CTAAAATTGGTGAAAATTCACTCGAATCCAAATGTAAACAACCCATTTTTCTCCTGTTCCAATCCCATCCATTCCATTCCATTCCTTCTCCCTGTGCTCGGATTCCTGTTCTTGCAGCTGATCCCTAGATCTTCCTCTTTGCCCGAGAATTTTCCGCCCAATTCCCCACTCCGATTCCTCTTCTTTCGCCCAAATTTTGGCTCAACATTTCGCAGCGCAATCTCGAGCTGAATCTTGGGGGGTAAAGCTTTGCTTCTTGGAATCTTGGTGCGGTTTTTGGGGGAGATTTGCGAGCGTTTGGAGCCGAGAAGATGAACAGGGAGAAATCCCCGATCCCGGGAGACGGCGGCGACGGGTTGCCGCCGCAGGCCACCCGCCGGGCGGGCCCTCCGGCGGCGGCGGCGGCGGCGGAGTACGACATCAGCCGCATGCCGGATTTCCCGACGAGGAACCCCGGCCACAGGCGCGCCCACTCCGAGATCCTGAGCCTCCCCGAGGACCTCGACCTGTGCGCGGCCGGCGGCGGCGACGGGCCGTCGCTGTCGGACGAGAACGACGAGNAGCTCTTCTCCATGTTCCTCGACGTGNAGAAGCTGAACAGCACGTGCGGNGCGT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL AK102795             [                                                                                                                                                                               TCCTCTTCTTTCGCCCAAATTTTGGCTCAACATTTCGCAGCGCAATCTCGAGCTGAATCTTGGGGGGTAAAGCTTTGCTTCTTGGAATCTTGGTGCGGTTTTTGGGGGAGATTTGCGAGCGTTTGGAGCCGAGAAGATGAACAGGGAGAAATCCCCGATCCCGGGAGACGGCGGCGACGGGTTGCCGCCGCAGGCCACCCGCCGGGCGGGCCCTCCGGCGGCGGCGGCGGCGGCGGAGTACGACATCAGCCGCATGCCGGATTTCCCGACGAGGAACCCCGGCCACAGGCGCGCCCACTCCGAGATCCTGAGCCTCCCCGAGGACCTCGACCTGTGCGCGGCCGGCGGCGGCGACGGGCCGTCGCTGTCGGACGAGAACGACGAGGAGCTCTTCTCCATGTTCCTCGACGTGGAGAAGCTGAACAGCACGTGCGGGGCGTCGTCGGAGGCGGAGGCGGAGTCGTCGTCCGCCGGCGCCGCGGCGGCGGTGGCGGCGGCGGCCGCCGCCGCCGCCCATGGAGCGAGGCCGAAGCACCAGCACAGCCTGTCCATGGATGAGTCGATGTCGATCAAGGCTGAGGAGCTCGTCGGGGCGTCGCCCGGGACGGAGGGGATGTCGTCGGCGGAGGCCAAGAAGGCCGTGTCCGCGGCCAAGCTCGCCGAGCTTGCTCTCGTCGATCCCAAGAGGGCGAAAAGGATTTGGGCTAACAGACATCTGCGGCAAGATCAAAGGAAAGGAAAATGCGATATATTGCTGAACTTGAGCGCAAGGTGCAAACCCTGCAAACAGAAGCAACAACACTGTCAGCCCAGTTGGCACTGCTACAGAGAGATACCAGTGGGCTAACTACTGAGAATAGTGAACTGAAGCTACGTCTGCAGACCATGGAGCAGCAAGTCCACTTGCAAGATGCTTTGAATGACACCCTGAAGTCTGAGGTTCAGCGGCTTAAGGTTGCAACCGGTCAAATGGCGAATGGTGGAGGGATGATGATGAACTTCGGTGGCATGCCACACCAATTCGGAGGCAACCAGCAGATGTTCCAGAACAACCAGGCCATGCAATCTATGCTGGCAGCACACCAGCTGCAACAGCTCCAGCTTCATCCTCAGGCTCAGCAGCAGCAGGTGCTGCACCCTCAGCATCAGCAGCAGCAGCCATTGCACCCTCTACAAGCGCAGCAGCTCCAGCAGGCGGCACGAGACCTCAAGATGAAATCGCCGATGGGCGGCCAGAGCCAGTGGGGAGATGGCAAGTCAGGAAGCAGCGGCAACTGATGCGTCATTTACAAATTTACAAAAAAATTCCCCAAAGTTTCGGTGTAAGGTTGTGGTTTAACAACCATGGAGATGGTCTGTTTCATTGAGATGATGATGATGTGCAAGAGTAGTTATCATCATCATCATCGGTAGGTTCAGGTTGGCTTCAGCTTCAGTCATACAGTTGGGTGGATGTTCAGTTGAAGAGTTTATCTGTAGCTGGTTCAGTAAGGAAATGGTCGAATAATCAAGAATTCCAGGTTAAAATCTTTCGTTTCTTTGGTAAGGTAGCACATCACCAAGATGTACTGTTGTAGTGTTGTCTACAGTTCCATAAATTCAAGTAGCCAGTATACGCTGTTGTTTAGTTTTTCTCCGGTTTTTTAGAGGTAGAGGCGTTTCTAGTGTTAATCGAGAGGTATACTGTATACCTTCTGATTAACATGTAAATCACTCAACACCTCTACCTCCATAAGGACCGGAGAAAAACTCAATTGTTTAATTAAGATGCCATTCATGACTAGAT]
[+] EMBL CB670850             [                                                                                                                                                                                                                   GCAGCGCACTCTCTAGCTGAATCTTGGGGGGTAAAGCTTTGCTTCTTGGAATCTTGGTGCGGTTTTTGGGGGAGATTTGCGAGCGTTTGGAGCCGATAAGATGAACAGGGAGAAATCCCCGATCCCGGGAGACGGCGGCGACGGGTTGCCGCCGCATGCCACCCGCCGGGCGGGCCCTCCGGCGGCGGCGGCGGCGGCGGAGTACTACATCAGCCGCATGCCGGATTTCCCGACGAGGAACCCCGGCCACAGGCGCGCCCACTCCGAGATCCTGAGCCTCCCCGAGGACCTCGACCTGTGCGCGGCCGGCGGCGGCGACGGGCCGTCGCTGTCGGACGAGAACGACGAGGAGCTCTTCTCCATGTTCCTCGACGTGGAGAAGCTGAACAGCACGTGCGGGGCGTCATCGGAGGCGGAGGCGGAGTCGTCGTCCGCCGGCGCCGCGGCGGCGGTGGCGGtg                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[-] EMBL CB670851             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       GCAACAACACTGTCAGCCCAGTTGGCACTGCTACAGAGAGATACCAGTGGGCTAACTACTGAGAATAGTGAACTGAAGCTACGTCTGCAGACCATGGAGCAGCAAGTCCACTTGCAAGATGCTTTGAATGACACCCTGAAGTCTGAGGTTCAGCGGCTTAAGGTTGCAACCGGTCAAATGGCGAATGGTGGAGGGATGATGATGAACTTCGGTGGCATGCCACACCAATTCGGAGGCAACCAGCAGATGTTCCAGAACAACCAGGCCATGCAATCTATGCTGGCAGCACACCAGCTGCAACAGCTCCAGCTTCATCCTCAGGCTCAGCAGCAGCAGGTGCTGCACCCTCAGCATCAGCAGCAGCAGCCATTGCACCCTCTACAAGCGCAGCAGCTCCAGCAGGCGGCACGAGACCTCAAGATGAAATCGCCGATGGGCGGCCAGAGCCAGTGGGGAGATGGCAAGTCAGGAAGCAGCGGCAACTGATGCGTCATTTACAAATTTACAAAAAAATTCCCCAAAGTTTCGGTGTAAGGTTGTGGTTTAACAACCATGGAGATGGTCTGTTTCATTGAGATGATGATGATGTGCAAGAGTAGTTATCATCATCATCATCGGTAGGTTCAGGTTGGCTTCAGCTTCAGTCATACAGTTGGGTGGATGTTCAGTTGAAGAGTTTATCTGTAGCTGGTTCAGTAAGGAAATGGTCGAATAATCAAGAATTCCAGGTTAAAATCTTTCGTTTCTTTGGTAAGGTAGCACATCACCAAGATGTACTGTTGTAGTGTTGTCTACAGTTCCATAAATT                                                                                                                                                                                          ]
[-] EMBL CA999481             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      TACAAATTTACAAAAAAATTCCCCAAAGTTTCGGTGTAAGGTTGTGGTTTAACAACCATGGAGATGGTCTGTTTCATTGAGATGATGATGATGTGCAAGAGTAGTTATCATCATCATCATCGGTAGGTTCAGGTTGGCTTCAGCTTCAGTCATACAGTTGGGTGGATGTTCAGTTGAAGAGTTTATCTGTAGCTGGTTCAGTAAGGAAATGGTCGAATAATCAAGAATTC                                                                                                                                                                                                                                                                             ]


>consensus_11169#0 CTAAAATTGGTGAAAATTCACTCGAATCCAAATGTAAACAACCCATTTTTCTCCTGTTCC AATCCCATCCATTCCATTCCATTCCTTCTCCCTGTGCTCGGATTCCTGTTCTTGCAGCTG ATCCCTAGATCTTCCTCTTTGCCCGAGAATTTTCCGCCCAATTCCCCACTCCGATTCCTC TTCTTTCGCCCAAATTTTGGCTCAACATTTCGCAGCGCAATCTCGAGCTGAATCTTGGGG GGTAAAGCTTTGCTTCTTGGAATCTTGGTGCGGTTTTTGGGGGAGATTTGCGAGCGTTTG GAGCCGAGAAGATGAACAGGGAGAAATCCCCGATCCCGGGAGACGGCGGCGACGGGTTGC CGCCGCAGGCCACCCGCCGGGCGGGCCCTCCGGCGGCGGCGGCGGCGGCGGAGTACGACA TCAGCCGCATGCCGGATTTCCCGACGAGGAACCCCGGCCACAGGCGCGCCCACTCCGAGA TCCTGAGCCTCCCCGAGGACCTCGACCTGTGCGCGGCCGGCGGCGGCGACGGGCCGTCGC TGTCGGACGAGAACGACGAGGAGCTCTTCTCCATGTTCCTCGACGTGGAGAAGCTGAACA GCACGTGCGGGGCGTCGTCGGAGGCGGAGGCGGAGTCGTCGTCCGCCGGCGCCGCGGCGG CGGTGGCGGCGGCGGCCGCCGCCGCCGCCCATGGAGCGAGGCCGAAGCACCAGCACAGCC TGTCCATGGATGAGTCGATGTCGATCAAGGCTGAGGAGCTCGTCGGGGCGTCGCCCGGGA CGGAGGGGATGTCGTCGGCGGAGGCCAAGAAGGCCGTGTCCGCGGCCAAGCTCGCCGAGC TTGCTCTCGTCGATCCCAAGAGGGCGAAAAGGATTTGGGCTAACAGACATCTGCGGCAAG ATCAAAGGAAAGGAAAATGCGATATATTGCTGAACTTGAGCGCAAGGTGCAAACCCTGCA AACAGAAGCAACAACACTGTCAGCCCAGTTGGCACTGCTACAGAGAGATACCAGTGGGCT AACTACTGAGAATAGTGAACTGAAGCTACGTCTGCAGACCATGGAGCAGCAAGTCCACTT GCAAGATGCTTTGAATGACACCCTGAAGTCTGAGGTTCAGCGGCTTAAGGTTGCAACCGG TCAAATGGCGAATGGTGGAGGGATGATGATGAACTTCGGTGGCATGCCACACCAATTCGG AGGCAACCAGCAGATGTTCCAGAACAACCAGGCCATGCAATCTATGCTGGCAGCACACCA GCTGCAACAGCTCCAGCTTCATCCTCAGGCTCAGCAGCAGCAGGTGCTGCACCCTCAGCA TCAGCAGCAGCAGCCATTGCACCCTCTACAAGCGCAGCAGCTCCAGCAGGCGGCACGAGA CCTCAAGATGAAATCGCCGATGGGCGGCCAGAGCCAGTGGGGAGATGGCAAGTCAGGAAG CAGCGGCAACTGATGCGTCATTTACAAATTTACAAAAAAATTCCCCAAAGTTTCGGTGTA AGGTTGTGGTTTAACAACCATGGAGATGGTCTGTTTCATTGAGATGATGATGATGTGCAA GAGTAGTTATCATCATCATCATCGGTAGGTTCAGGTTGGCTTCAGCTTCAGTCATACAGT TGGGTGGATGTTCAGTTGAAGAGTTTATCTGTAGCTGGTTCAGTAAGGAAATGGTCGAAT AATCAAGAATTCCAGGTTAAAATCTTTCGTTTCTTTGGTAAGGTAGCACATCACCAAGAT GTACTGTTGTAGTGTTGTCTACAGTTCCATAAATTCAAGTAGCCAGTATACGCTGTTGTT TAGTTTTTCTCCGGTTTTTTAGAGGTAGAGGCGTTTCTAGTGTTAATCGAGAGGTATACT GTATACCTTCTGATTAACATGTAAATCACTCAACACCTCTACCTCCATAAGGACCGGAGA AAAACTCAATTGTTTAATTAAGATGCCATTCATGACTAGAT



consensusID : consensus_11169#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1282
fasta sequence
                              [TTTTTACTGTCCCCATGCAGACAATGCCAAAGGGATAAACAGAGTTAAAATTGGTGAAAATTCACTCGAATCCAAATGTAAACAACCCATTTTTCTCCTGTTCCAATCCCATCCATTCCATTCCATTCCTTCTCCCTGTGCTCGGATTCCTGTTCTTGCAGCTGATCCCTAGATCTTCCTCTTTGCCCGAGAATTTTCCGCCCAATTCCCCACTCCGATTCCTCTTCTTTCGCCCAAATTTTGGCTCAACATTTCGCAGCGCAATCTCGAGCTGAATCTTGGGGGGTAAAGCTTTGCTTCTTGGAATCTTGGTGCGGTTTTTGGGGGAGATTTGCGAGCGTTTGGAGCCGAGAAGATGAACAGGGAGAAATCCCCGATCCCGGGAGACGGCGGCGACGGGTTGCCGCCGCAGGCCACCCGCCGGGCGGGCCCTCCGGCGGCGGCGGCGGCGGCGGAGTACGACATCAGCCGCATGCCGGATTTCCCGACGAGGAACCCCGGCCACAGGCGCGCCCACTCCGAGATCCTGAGCCTCCCCGAGGACCTCGACCTGTGCGCGGCCGGCGGCGGCGACGGGCCGTCGCTGTCGGACGAGAACGACGAGGAGCTCTTCTCCATGTTCCTCGACGTGGAGAAGCTGAACAGCACGTGCGGGGCGTCGTCGGAGGCGGAGGCGGAGTCGTCGTCCGCCGCCGCCCATGGAGCGAGGCCGAAGCACCAGCACAGCCTGTCCATGGATGAGTCGATGTCGATCAAGGCTGAGGAGCTCGTCGGGGCGTCGCCCGGGACGGAGGGGATGTCGTCGGCGGAGGCCAAGAAGGCCGTGTCCGCGGTCAAGCTCGCCGAGCTTGCTCTCGTCGATCCCAAGAGGGCGAAAAGGATTTGGGCTAACAGACAATCTGCGGCAAGATCAAAGGAAAGGAAAATGCGATATATTGCTGAACTTGAGCGCAAGGTGCAAACCCTGCAAACAGAAGCAACAACACTGTCAGCCCAGTTGGCACTGCTACAGAGAGATACCAGTGGGCTAACTACTGAGAATAGTGAACTGAAGCTACGTCTGCAGACCATGGAGCAGCAAGTCCACTTGCAAGATGCTTTGAATGACACCCTGAAGTCTGAGGTTCAGCGGCTTAAGGTTGCAACCGGTCAAATGGCGAATGGTGGAGGGATGATGATGAACTTCGGTGGCATGCCACACCAATTCGGAGGCAACCAGCAGATGTTCCAGAACAACCAGGCCATGCAATCTATGCTGGCAGCACACCAGCTGCAACAGCTC]

[+] EMBL OSAF5492             [TTTTTACTGTCCCCATGCAGACAATGCCAAAGGGATAAACAGAGTTAAAATTGGTGAAAATTCACTCGAATCCAAATGTAAACAACCCATTTTTCTCCTGTTCCAATCCCATCCATTCCATTCCATTCCTTCTCCCTGTGCTCGGATTCCTGTTCTTGCAGCTGATCCCTAGATCTTCCTCTTTGCCCGAGAATTTTCCGCCCAATTCCCCACTCCGATTCCTCTTCTTTCGCCCAAATTTTGGCTCAACATTTCGCAGCGCAATCTCGAGCTGAATCTTGGGGGGTAAAGCTTTGCTTCTTGGAATCTTGGTGCGGTTTTTGGGGGAGATTTGCGAGCGTTTGGAGCCGAGAAGATGAACAGGGAGAAATCCCCGATCCCGGGAGACGGCGGCGACGGGTTGCCGCCGCAGGCCACCCGCCGGGCGGGCCCTCCGGCGGCGGCGGCGGCGGCGGAGTACGACATCAGCCGCATGCCGGATTTCCCGACGAGGAACCCCGGCCACAGGCGCGCCCACTCCGAGATCCTGAGCCTCCCCGAGGACCTCGACCTGTGCGCGGCCGGCGGCGGCGACGGGCCGTCGCTGTCGGACGAGAACGACGAGGAGCTCTTCTCCATGTTCCTCGACGTGGAGAAGCTGAACAGCACGTGCGGGGCGTCGTCGGAGGCGGAGGCGGAGTCGTCGTCCGCCGCCGCCCATGGAGCGAGGCCGAAGCACCAGCACAGCCTGTCCATGGATGAGTCGATGTCGATCAAGGCTGAGGAGCTCGTCGGGGCGTCGCCCGGGACGGAGGGGATGTCGTCGGCGGAGGCCAAGAAGGCCGTGTCCGCGGTCAAGCTCGCCGAGCTTGCTCTCGTCGATCCCAAGAGGGCGAAAAGGATTTGGGCTAACAGACAATCTGCGGCAAGATCAAAGGAAAGGAAAATGCGATATATTGCTGAACTTGAGCGCAAGGTGCAAACCCTGCAAACAGAAGCAACAACACTGTCAGCCCAGTTGGCACTGCTACAGAGAGATACCAGTGGGCTAACTACTGAGAATAGTGAACTGAAGCTACGTCTGCAGACCATGGAGCAGCAAGTCCACTTGCAAGATGCTTTGAATGACACCCTGAAGTCTGAGGTTCAGCGGCTTAAGGTTGCAACCGGTCAAATGGCGAATGGTGGAGGGATGATGATGAACTTCGGTGGCATGCCACACCAATTCGGAGGCAACCAGCAGATGTTCCAGAACAACCAGGCCATGCAATCTATGCTGGCAGCACACCAGCTGCAACAGCTC]
[+] EMBL C27453               [                                                        AAAATTCACTCGAATCCAAATGTAAACAACCCATTTTTCTCCTGTTCCAATCCCATCCATTCCATTCCATTCCTTCTCCCTGTGCTCGGATTCCTGTTCTTGCAGCTGATCCCTAGATCTTCCTCTTTGCCCGAGAATTTTCCGCCCAATTCCCCACTCCGATTCCTCTTCTTTCGCCCAAATTTTGGCTCAACATTTCGCAGCGCAATCTCGAGCTGAATCTTGGGGGGTAAAGCTTTGCTTCTTGGAATCTTGGTGCGGTTTTTGGGGGAGATTTTCGAGCGTTTGGAGCCGAGAAGATGAACAGGGAGAAATNCCCGATNCCGGGAGACGGCGGCGACGGGTTTCCGCgaagca                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]


>consensus_11169#1 TTTTTACTGTCCCCATGCAGACAATGCCAAAGGGATAAACAGAGTTAAAATTGGTGAAAA TTCACTCGAATCCAAATGTAAACAACCCATTTTTCTCCTGTTCCAATCCCATCCATTCCA TTCCATTCCTTCTCCCTGTGCTCGGATTCCTGTTCTTGCAGCTGATCCCTAGATCTTCCT CTTTGCCCGAGAATTTTCCGCCCAATTCCCCACTCCGATTCCTCTTCTTTCGCCCAAATT TTGGCTCAACATTTCGCAGCGCAATCTCGAGCTGAATCTTGGGGGGTAAAGCTTTGCTTC TTGGAATCTTGGTGCGGTTTTTGGGGGAGATTTGCGAGCGTTTGGAGCCGAGAAGATGAA CAGGGAGAAATCCCCGATCCCGGGAGACGGCGGCGACGGGTTGCCGCCGCAGGCCACCCG CCGGGCGGGCCCTCCGGCGGCGGCGGCGGCGGCGGAGTACGACATCAGCCGCATGCCGGA TTTCCCGACGAGGAACCCCGGCCACAGGCGCGCCCACTCCGAGATCCTGAGCCTCCCCGA GGACCTCGACCTGTGCGCGGCCGGCGGCGGCGACGGGCCGTCGCTGTCGGACGAGAACGA CGAGGAGCTCTTCTCCATGTTCCTCGACGTGGAGAAGCTGAACAGCACGTGCGGGGCGTC GTCGGAGGCGGAGGCGGAGTCGTCGTCCGCCGCCGCCCATGGAGCGAGGCCGAAGCACCA GCACAGCCTGTCCATGGATGAGTCGATGTCGATCAAGGCTGAGGAGCTCGTCGGGGCGTC GCCCGGGACGGAGGGGATGTCGTCGGCGGAGGCCAAGAAGGCCGTGTCCGCGGTCAAGCT CGCCGAGCTTGCTCTCGTCGATCCCAAGAGGGCGAAAAGGATTTGGGCTAACAGACAATC TGCGGCAAGATCAAAGGAAAGGAAAATGCGATATATTGCTGAACTTGAGCGCAAGGTGCA AACCCTGCAAACAGAAGCAACAACACTGTCAGCCCAGTTGGCACTGCTACAGAGAGATAC CAGTGGGCTAACTACTGAGAATAGTGAACTGAAGCTACGTCTGCAGACCATGGAGCAGCA AGTCCACTTGCAAGATGCTTTGAATGACACCCTGAAGTCTGAGGTTCAGCGGCTTAAGGT TGCAACCGGTCAAATGGCGAATGGTGGAGGGATGATGATGAACTTCGGTGGCATGCCACA CCAATTCGGAGGCAACCAGCAGATGTTCCAGAACAACCAGGCCATGCAATCTATGCTGGC AGCACACCAGCTGCAACAGCTC



consensusID : consensus_11169#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 312
fasta sequence
                              [GNCNTNCGGATTCCTGTTCTTGCAGCTGATCCCTAGATCTTCCTCTTTGCCCGAGAATTTTCCGCCCAATTCCCCACTCCGATTCCTCTTCTTTCGCCCAAATTTTGGCTCAACATTTCGCAGCGCAATCTCGAGCTGAATCTTGGGGGGTAAAGCTTTGCTTCTTGGAATCTTGGTGCGGTTTTTGGGGGAGATTTGCGAGCGTTTGGAGCCGAGAAGATGAACAGGGAGAAATCCCCGATNCCGGNAGACGGCGGCGACGGGCCGTCGTTGTCGGACGAGAACGACGAGGAGTCTTCTCCATGTTCCTCG]

[+] EMBL C74166               [GNCNTNCGGATTCCTGTTCTTGCAGCTGATCCCTAGATCTTCCTCTTTGCCCGAGAATTTTCCGCCCAATTCCCCACTCCGATTCCTCTTCTTTCGCCCAAATTTTGGCTCAACATTTCGCAGCGCAATCTCGAGCTGAATCTTGGGGGGTAAAGCTTTGCTTCTTGGAATCTTGGTGCGGTTTTTGGGGGAGATTTGCGAGCGTTTGGAGCCGAGAAGATGAACAGGGAGAAATCCCCGATNCCGGNAGACGGCGGCGACGGGCCGTCGTTGTCGGACGAGAACGACGAGGAGTCTTCTCCATGTTCCTCG]


>consensus_11169#2 GNCNTNCGGATTCCTGTTCTTGCAGCTGATCCCTAGATCTTCCTCTTTGCCCGAGAATTT TCCGCCCAATTCCCCACTCCGATTCCTCTTCTTTCGCCCAAATTTTGGCTCAACATTTCG CAGCGCAATCTCGAGCTGAATCTTGGGGGGTAAAGCTTTGCTTCTTGGAATCTTGGTGCG GTTTTTGGGGGAGATTTGCGAGCGTTTGGAGCCGAGAAGATGAACAGGGAGAAATCCCCG ATNCCGGNAGACGGCGGCGACGGGCCGTCGTTGTCGGACGAGAACGACGAGGAGTCTTCT CCATGTTCCTCG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_11169#0      --------------------------------------------CTAAAATTGGTGAAAA 16
consensus_11169#1      TTTTTACTGTCCCCATGCAGACAATGCCAAAGGGATAAACAGAGTTAAAATTGGTGAAAA 60
consensus_11169#2      ------------------------------------------------------------
                                                                                   

consensus_11169#0      TTCACTCGAATCCAAATGTAAACAACCCATTTTTCTCCTGTTCCAATCCCATCCATTCCA 76
consensus_11169#1      TTCACTCGAATCCAAATGTAAACAACCCATTTTTCTCCTGTTCCAATCCCATCCATTCCA 120
consensus_11169#2      ------------------------------------------------------------
                                                                                   

consensus_11169#0      TTCCATTCCTTCTCCCTGTGCTCGGATTCCTGTTCTTGCAGCTGATCCCTAGATCTTCCT 136
consensus_11169#1      TTCCATTCCTTCTCCCTGTGCTCGGATTCCTGTTCTTGCAGCTGATCCCTAGATCTTCCT 180
consensus_11169#2      ----------------GNCNTNCGGATTCCTGTTCTTGCAGCTGATCCCTAGATCTTCCT 44
                                             **************************************

consensus_11169#0      CTTTGCCCGAGAATTTTCCGCCCAATTCCCCACTCCGATTCCTCTTCTTTCGCCCAAATT 196
consensus_11169#1      CTTTGCCCGAGAATTTTCCGCCCAATTCCCCACTCCGATTCCTCTTCTTTCGCCCAAATT 240
consensus_11169#2      CTTTGCCCGAGAATTTTCCGCCCAATTCCCCACTCCGATTCCTCTTCTTTCGCCCAAATT 104
                       ************************************************************

consensus_11169#0      TTGGCTCAACATTTCGCAGCGCAATCTCGAGCTGAATCTTGGGGGGTAAAGCTTTGCTTC 256
consensus_11169#1      TTGGCTCAACATTTCGCAGCGCAATCTCGAGCTGAATCTTGGGGGGTAAAGCTTTGCTTC 300
consensus_11169#2      TTGGCTCAACATTTCGCAGCGCAATCTCGAGCTGAATCTTGGGGGGTAAAGCTTTGCTTC 164
                       ************************************************************

consensus_11169#0      TTGGAATCTTGGTGCGGTTTTTGGGGGAGATTTGCGAGCGTTTGGAGCCGAGAAGATGAA 316
consensus_11169#1      TTGGAATCTTGGTGCGGTTTTTGGGGGAGATTTGCGAGCGTTTGGAGCCGAGAAGATGAA 360
consensus_11169#2      TTGGAATCTTGGTGCGGTTTTTGGGGGAGATTTGCGAGCGTTTGGAGCCGAGAAGATGAA 224
                       ************************************************************

consensus_11169#0      CAGGGAGAAATCCCCGATCCCGGGAGACGGCGGCGACGGGTTGCCGCCGCAGGCCACCCG 376
consensus_11169#1      CAGGGAGAAATCCCCGATCCCGGGAGACGGCGGCGACGGGTTGCCGCCGCAGGCCACCCG 420
consensus_11169#2      CAGGGAGAAATCCCCGATNCCGGNAGACGGCGGCGACGGGCCGTCGTTGTCGGACGAGAA 284
                       ****************** **** ****************  * **  *  ** *     

consensus_11169#0      CCGGGCGGGCCCTCCGGCGGCGGCGGCGGCGGCGGAGTACGACATCAGCCGCATGCCGGA 436
consensus_11169#1      CCGGGCGGGCCCTCCGGCGGCGGCGGCGGCGGCGGAGTACGACATCAGCCGCATGCCGGA 480
consensus_11169#2      CGACGAGGAGTCTTCTCCATGTTCCTCG-------------------------------- 312
                       *   * **   ** *  *     *  **                                

consensus_11169#0      TTTCCCGACGAGGAACCCCGGCCACAGGCGCGCCCACTCCGAGATCCTGAGCCTCCCCGA 496
consensus_11169#1      TTTCCCGACGAGGAACCCCGGCCACAGGCGCGCCCACTCCGAGATCCTGAGCCTCCCCGA 540
consensus_11169#2      ------------------------------------------------------------
                                                                                   

consensus_11169#0      GGACCTCGACCTGTGCGCGGCCGGCGGCGGCGACGGGCCGTCGCTGTCGGACGAGAACGA 556
consensus_11169#1      GGACCTCGACCTGTGCGCGGCCGGCGGCGGCGACGGGCCGTCGCTGTCGGACGAGAACGA 600
consensus_11169#2      ------------------------------------------------------------
                                                                                   

consensus_11169#0      CGAGGAGCTCTTCTCCATGTTCCTCGACGTGGAGAAGCTGAACAGCACGTGCGGGGCGTC 616
consensus_11169#1      CGAGGAGCTCTTCTCCATGTTCCTCGACGTGGAGAAGCTGAACAGCACGTGCGGGGCGTC 660
consensus_11169#2      ------------------------------------------------------------
                                                                                   

consensus_11169#0      GTCGGAGGCGGAGGCGGAGTCGTCGTCCGCCGGCGCCGCGGCGGCGGTGGCGGCGGCGGC 676
consensus_11169#1      GTCGGAGGCGGAGGCGGAGTCGTCGTCCGCCG---------------------------- 692
consensus_11169#2      ------------------------------------------------------------
                                                                                   

consensus_11169#0      CGCCGCCGCCGCCCATGGAGCGAGGCCGAAGCACCAGCACAGCCTGTCCATGGATGAGTC 736
consensus_11169#1      --------CCGCCCATGGAGCGAGGCCGAAGCACCAGCACAGCCTGTCCATGGATGAGTC 744
consensus_11169#2      ------------------------------------------------------------
                                                                                   

consensus_11169#0      GATGTCGATCAAGGCTGAGGAGCTCGTCGGGGCGTCGCCCGGGACGGAGGGGATGTCGTC 796
consensus_11169#1      GATGTCGATCAAGGCTGAGGAGCTCGTCGGGGCGTCGCCCGGGACGGAGGGGATGTCGTC 804
consensus_11169#2      ------------------------------------------------------------
                                                                                   

consensus_11169#0      GGCGGAGGCCAAGAAGGCCGTGTCCGCGGCCAAGCTCGCCGAGCTTGCTCTCGTCGATCC 856
consensus_11169#1      GGCGGAGGCCAAGAAGGCCGTGTCCGCGGTCAAGCTCGCCGAGCTTGCTCTCGTCGATCC 864
consensus_11169#2      ------------------------------------------------------------
                                                                                   

consensus_11169#0      CAAGAGGGCGAAAAGGATTTGGGCTAACAGACA-TCTGCGGCAAGATCAAAGGAAAGGAA 915
consensus_11169#1      CAAGAGGGCGAAAAGGATTTGGGCTAACAGACAATCTGCGGCAAGATCAAAGGAAAGGAA 924
consensus_11169#2      ------------------------------------------------------------
                                                                                   

consensus_11169#0      AATGCGATATATTGCTGAACTTGAGCGCAAGGTGCAAACCCTGCAAACAGAAGCAACAAC 975
consensus_11169#1      AATGCGATATATTGCTGAACTTGAGCGCAAGGTGCAAACCCTGCAAACAGAAGCAACAAC 984
consensus_11169#2      ------------------------------------------------------------
                                                                                   

consensus_11169#0      ACTGTCAGCCCAGTTGGCACTGCTACAGAGAGATACCAGTGGGCTAACTACTGAGAATAG 1035
consensus_11169#1      ACTGTCAGCCCAGTTGGCACTGCTACAGAGAGATACCAGTGGGCTAACTACTGAGAATAG 1044
consensus_11169#2      ------------------------------------------------------------
                                                                                   

consensus_11169#0      TGAACTGAAGCTACGTCTGCAGACCATGGAGCAGCAAGTCCACTTGCAAGATGCTTTGAA 1095
consensus_11169#1      TGAACTGAAGCTACGTCTGCAGACCATGGAGCAGCAAGTCCACTTGCAAGATGCTTTGAA 1104
consensus_11169#2      ------------------------------------------------------------
                                                                                   

consensus_11169#0      TGACACCCTGAAGTCTGAGGTTCAGCGGCTTAAGGTTGCAACCGGTCAAATGGCGAATGG 1155
consensus_11169#1      TGACACCCTGAAGTCTGAGGTTCAGCGGCTTAAGGTTGCAACCGGTCAAATGGCGAATGG 1164
consensus_11169#2      ------------------------------------------------------------
                                                                                   

consensus_11169#0      TGGAGGGATGATGATGAACTTCGGTGGCATGCCACACCAATTCGGAGGCAACCAGCAGAT 1215
consensus_11169#1      TGGAGGGATGATGATGAACTTCGGTGGCATGCCACACCAATTCGGAGGCAACCAGCAGAT 1224
consensus_11169#2      ------------------------------------------------------------
                                                                                   

consensus_11169#0      GTTCCAGAACAACCAGGCCATGCAATCTATGCTGGCAGCACACCAGCTGCAACAGCTCCA 1275
consensus_11169#1      GTTCCAGAACAACCAGGCCATGCAATCTATGCTGGCAGCACACCAGCTGCAACAGCTC-- 1282
consensus_11169#2      ------------------------------------------------------------
                                                                                   

consensus_11169#0      GCTTCATCCTCAGGCTCAGCAGCAGCAGGTGCTGCACCCTCAGCATCAGCAGCAGCAGCC 1335
consensus_11169#1      ------------------------------------------------------------
consensus_11169#2      ------------------------------------------------------------
                                                                                   

consensus_11169#0      ATTGCACCCTCTACAAGCGCAGCAGCTCCAGCAGGCGGCACGAGACCTCAAGATGAAATC 1395
consensus_11169#1      ------------------------------------------------------------
consensus_11169#2      ------------------------------------------------------------
                                                                                   

consensus_11169#0      GCCGATGGGCGGCCAGAGCCAGTGGGGAGATGGCAAGTCAGGAAGCAGCGGCAACTGATG 1455
consensus_11169#1      ------------------------------------------------------------
consensus_11169#2      ------------------------------------------------------------
                                                                                   

consensus_11169#0      CGTCATTTACAAATTTACAAAAAAATTCCCCAAAGTTTCGGTGTAAGGTTGTGGTTTAAC 1515
consensus_11169#1      ------------------------------------------------------------
consensus_11169#2      ------------------------------------------------------------
                                                                                   

consensus_11169#0      AACCATGGAGATGGTCTGTTTCATTGAGATGATGATGATGTGCAAGAGTAGTTATCATCA 1575
consensus_11169#1      ------------------------------------------------------------
consensus_11169#2      ------------------------------------------------------------
                                                                                   

consensus_11169#0      TCATCATCGGTAGGTTCAGGTTGGCTTCAGCTTCAGTCATACAGTTGGGTGGATGTTCAG 1635
consensus_11169#1      ------------------------------------------------------------
consensus_11169#2      ------------------------------------------------------------
                                                                                   

consensus_11169#0      TTGAAGAGTTTATCTGTAGCTGGTTCAGTAAGGAAATGGTCGAATAATCAAGAATTCCAG 1695
consensus_11169#1      ------------------------------------------------------------
consensus_11169#2      ------------------------------------------------------------
                                                                                   

consensus_11169#0      GTTAAAATCTTTCGTTTCTTTGGTAAGGTAGCACATCACCAAGATGTACTGTTGTAGTGT 1755
consensus_11169#1      ------------------------------------------------------------
consensus_11169#2      ------------------------------------------------------------
                                                                                   

consensus_11169#0      TGTCTACAGTTCCATAAATTCAAGTAGCCAGTATACGCTGTTGTTTAGTTTTTCTCCGGT 1815
consensus_11169#1      ------------------------------------------------------------
consensus_11169#2      ------------------------------------------------------------
                                                                                   

consensus_11169#0      TTTTTAGAGGTAGAGGCGTTTCTAGTGTTAATCGAGAGGTATACTGTATACCTTCTGATT 1875
consensus_11169#1      ------------------------------------------------------------
consensus_11169#2      ------------------------------------------------------------
                                                                                   

consensus_11169#0      AACATGTAAATCACTCAACACCTCTACCTCCATAAGGACCGGAGAAAAACTCAATTGTTT 1935
consensus_11169#1      ------------------------------------------------------------
consensus_11169#2      ------------------------------------------------------------
                                                                                   

consensus_11169#0      AATTAAGATGCCATTCATGACTAGAT 1961
consensus_11169#1      --------------------------
consensus_11169#2      --------------------------
                                                 




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)