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Oryza sativa
cluster # 11171 cluster # 11171       Sequences # 8       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_11171#0 length = 681 sequences # 5  
consensus_11171#1 length = 539 sequences # 1  
consensus_11171#2 length = 489 sequences # 2  

consensusID : consensus_11171#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 681
fasta sequence
                              [GTCGTCTCCTCCTCCGTTCGCCGTCTCCTCCCCC-AACTCGCGC-CCGGCGG-GAGCAA-GCGAAGCGAAGTCCCCGTGTAGCTCCCGGTTTGGATCGACCCCGGCGGCGGCGGCAGGGATGGCGCTGAGGGGCGTTTGGCAGCTGCAGAAGCTCGTGGTGAACTACTGCGATTGGGGAGGGAGCAGCAGGGGGATCAGGGCTTTTATGGAGGCGCATCTTCCAGCTTTTAAGGAAAAGAACCCCCACTTAGAGGTGGTGACAGAGTTAGTCCGTGGACAGCATCCTAACCTGAAGGGCATTTACAAAAATCATAATGAGCGAGTTGTTTGTGTCCGAAATTTAGCGCCCGAGGACATACTATTGCAAGCTACCAGGCTAAGGAATTCTCTGGGCAGGAAAGTGGTGAAGCTGAGAACCAGACACGTAACAAAGCGCCCCAGTGTTCAGGGAACATGGACGACAGAACTGAAGATGTGATCATGTGAGTTGACCAGTTGGGTTCTCAGACAAGCTGCTGATGTTCTTTGATGTCGTGATTGCAGAACTGTTTTCATATGCGTGTCAAGAATTAGTCAGTGCAGCTATTCGACTCACCTTTTTTTAGT-G-ATTACAGTTCAACTTTGTCTTTTTGTTTCGTCCGGTATCTGATAATAACATGCAAACTTGGGTGTTAAAAAAAAAAA]

[+] EMBL OSC18432             [GTCGTCTCCTCCTCCGTTCGCCGTCTCCTCCCCC AACTCGCGCGCCGGCGG GAGCAAGGCNAAG GATGTCCCCGTGTAGCTCCCGGTTTGGATCGACCCCGGCGGCGGCGGCAGGGATGGCGCTGAGGGGCGTTTGGCAGCTGCAGAAGCTCGTGGTGAACTACTGCGATTGGGGAGGGAGCAGCAGGGGGATCAGGGCTTTTATGGAGGCGCATCTTCCAGCTTTTAAGGAAAAGAACCCCCACTTAGAGGTGGTGACAGAGTTAGTCCGTNGACAGCATCCTAACCTGAAGGGCATTTACAAAAATCATAATGA                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL C26916               [                    CCGTCTCCTCCCCC AACTCGCGCGCCGGCGG GAGCAA GCAAAGANAGGTCCCCGTGTAGCTCCCGGTTTGGTTCNACCCCGGCGGCGGCGGCAGGGATGGCGCTGAGGGGCGTTTGGCAGCTGCAGAAGCTCGTGGTGAACTACTGCNATTGGGGAGGGATTAGCAGGGGGATCAGGGCTTTTATGGAGGCGCATCTTCCAGCTTTTAAGGAAAAGAACCCCCACTTAGAGGTGGTGACAGAGTTAGTCCGTGGACAGCATCCTAACCTGAAGGGCA                                                                                                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL C96988               [                         TCTTCCCCCAAANTCGCGC CCGGCGGCGAGCAA GCGAAGCGGAGTCCCCGTGTAGCTCCCGGTTTGGATCGACCCCGGCGGCGGCGGCAGGGATGGCGCTGAGGGGCGTTTGGCAGCTGCAGAAGCTCGTGGTGAACTACTGCGATTGGGGAGGGAGCAGCAGGGGGATCAGGGCTTTTATGGAGGCGCATCTTCCAGCTTTTAAGGAAAAGAACCCCCACTTAGAGGTGGTGACAGAGTTAGTCCGTGGACAGCATCCTAACCTGAAGGGCATTTACAAAAATCATAATGAGCGAGTTGTTTGTGTCCGAAATTTAGCGCCCGAGGACATACTATTGCAAGCTACCAGGCTAAGGAATTCTCTGGGCAGGAAAGTGGTGAAGCTGAGAACCAGACACGTAACAAAGCGCCCCAGTGTTCAGGGAACATGGACGACAGAACTGAAGATGTGATCATGTGAGTTGACCAGTTGGGTTCTCAGACAAGCTGCTGATGTTCTTTGATGTCGTGATTGCAGAACTGTTTTCATATGCGTGTCAAGAATTAGTCAGTGCAGCTATTCGACTCACCTTTTTTTAGT G ATTACAGTTCAACTTTGTCTTTTTGTTTCGTCCGGTATCTGATAATAACATGCAAACTTGGGTGTTAAAAAAAAAAA]
[+] EMBL CA758827             [                                                GCGGCGAGCAA GCGAAGCGGAGTCCCCGTGTAGCTCCCGGTTTGGATCGACCCCGGCGGCGGCGGCAGGGATGGCGCTGAGGGGCGTTTGGCAGCTGCAGAAGCTCGTGGTGAACTACTGCGATTGGGGAGGGAGCAGCAGGGGGATCAGGGCTTTTATGGAGGCGCATCTTCCAGCTTTTAAGGAAAAGAACCCCCACTTAGAGGTGGTGACAGAGTTAGTCCGTGGACAGCATCCTAACCTGAAGGGCATTTACAAAAATCATAATGAGCGAGTTGTTTGTGTCCGAAATTTAGCGCCCGAGGACATACTATTGCAAGCTACCAGGCTAAGGAATTCTCTGGGCAGGAAAGTGGTGAAGCTGAGAACCAGACACGTAACANAGCGCCCCAGTGTTCAGGGAACATGGACGACAGAACTGAAGATGTGATCATGTGAGTTGACCAGTTGGGTTCTCAGACNAGCTGCTGATGTTCTTTGATGTCGTGATTGCAGAACTGTTTTCATATGCGTGTCAAGAATTAGTCAGTGCAGCTATTCGACTCACCTTTTTTTAGT GNATTACAGTTC ACTTTGTCTTTTTGTTTCGTCCGGTATCTGATAAT ACATGCANACT                   ]
[+] EMBL C99503               [                                                                                                                                                                                                                                                 CCCCCACTTAGAGGTGGTGACAGAGTTANTCCGTGGACAGCATCCTAACCTGAAGGGCATTTACAAAAATCATAATGAGCGAGTTGTTTGTGTCCGAAATTTAGCGCCCGAGGACATACTATTGCAAGCTACCAGGCTAAGGAATTCTCTGGGCAGGAAAGTGGTGAAGCTGAGAACCAGACACGTAACAAAGCGCCCCAGTGTTCAGGGAACATGGACGACAGAACTGAAGATGTGATCATGTGAGTTGACCAGTTGGGTTCTCAGACAAGCTGCTGATGTTCTTTGATGTCGTGATTGCAGAACTGTTTTCATATGCGTGTCAAGAATTAGTCAGTGCAGCTATTCGACTCACCTTTTTTTAGTGG ATTACAGTTCAACTTTGTCTTTTTGTTTCGTCCGGTATCTGATAATAACATGCAAACTTGGGTGTTcctt       ]


>consensus_11171#0 GTCGTCTCCTCCTCCGTTCGCCGTCTCCTCCCCCAACTCGCGCCCGGCGGGAGCAAGCGA AGCGAAGTCCCCGTGTAGCTCCCGGTTTGGATCGACCCCGGCGGCGGCGGCAGGGATGGC GCTGAGGGGCGTTTGGCAGCTGCAGAAGCTCGTGGTGAACTACTGCGATTGGGGAGGGAG CAGCAGGGGGATCAGGGCTTTTATGGAGGCGCATCTTCCAGCTTTTAAGGAAAAGAACCC CCACTTAGAGGTGGTGACAGAGTTAGTCCGTGGACAGCATCCTAACCTGAAGGGCATTTA CAAAAATCATAATGAGCGAGTTGTTTGTGTCCGAAATTTAGCGCCCGAGGACATACTATT GCAAGCTACCAGGCTAAGGAATTCTCTGGGCAGGAAAGTGGTGAAGCTGAGAACCAGACA CGTAACAAAGCGCCCCAGTGTTCAGGGAACATGGACGACAGAACTGAAGATGTGATCATG TGAGTTGACCAGTTGGGTTCTCAGACAAGCTGCTGATGTTCTTTGATGTCGTGATTGCAG AACTGTTTTCATATGCGTGTCAAGAATTAGTCAGTGCAGCTATTCGACTCACCTTTTTTT AGTGATTACAGTTCAACTTTGTCTTTTTGTTTCGTCCGGTATCTGATAATAACATGCAAA CTTGGGTGTTAAAAAAAAAAA



consensusID : consensus_11171#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 539
fasta sequence
                              [CAGGAATTCGGCACGAGGCGCGCCGGCGGCGAGCAAGGTAAGGACTGATCGATTGGCTTGGGCCGCTTGCATCCTCGTCTTCCTCATCCGGGGTCTCCGAATTTCCGCGTGCAGCGAAGCGGAGTCCCCGTGTAGCTCCCGGTTTGGATCGACCCCGGCGGCGGCGGCAGGGATGGCGCTGAGGGGCGTTTGGCAGCTGCAGAAGCTCGTGGTGAACTACTGCGATTGGGGAGGGAGCAGCAGGGGGATCAGGGCTTTTATGGAGGCGCATCTTCCAGCTTTTAAGGAAAAGAACCCCCACTTAGAGGTGGTGACAGAGTTAGTCCGTGGACAGCATCCTAACCTGAAGGGCATTTACAAAAATCATAATGAGCGAGTTGTTTGTGTCCGAAATTTAACGCCCCAGGACATACTATTGCAAGCTACCACGCTAAGGGATTCTCTGGGCAAGAAAGTGGTGAAGCTTGAAACCACACACGTTACAAAGCGCCCCCATTGGTTTAGGAACATTGACCACAAAACTGGAGATGTGATCATGT]

[+] EMBL BE039192             [CAGGAATTCGGCACGAGGCGCGCCGGCGGCGAGCAAGGTAAGGACTGATCGATTGGCTTGGGCCGCTTGCATCCTCGTCTTCCTCATCCGGGGTCTCCGAATTTCCGCGTGCAGCGAAGCGGAGTCCCCGTGTAGCTCCCGGTTTGGATCGACCCCGGCGGCGGCGGCAGGGATGGCGCTGAGGGGCGTTTGGCAGCTGCAGAAGCTCGTGGTGAACTACTGCGATTGGGGAGGGAGCAGCAGGGGGATCAGGGCTTTTATGGAGGCGCATCTTCCAGCTTTTAAGGAAAAGAACCCCCACTTAGAGGTGGTGACAGAGTTAGTCCGTGGACAGCATCCTAACCTGAAGGGCATTTACAAAAATCATAATGAGCGAGTTGTTTGTGTCCGAAATTTAACGCCCCAGGACATACTATTGCAAGCTACCACGCTAAGGGATTCTCTGGGCAAGAAAGTGGTGAAGCTTGAAACCACACACGTTACAAAGCGCCCCCATTGGTTTAGGAACATTGACCACAAAACTGGAGATGTGATCATGT]


>consensus_11171#1 CAGGAATTCGGCACGAGGCGCGCCGGCGGCGAGCAAGGTAAGGACTGATCGATTGGCTTG GGCCGCTTGCATCCTCGTCTTCCTCATCCGGGGTCTCCGAATTTCCGCGTGCAGCGAAGC GGAGTCCCCGTGTAGCTCCCGGTTTGGATCGACCCCGGCGGCGGCGGCAGGGATGGCGCT GAGGGGCGTTTGGCAGCTGCAGAAGCTCGTGGTGAACTACTGCGATTGGGGAGGGAGCAG CAGGGGGATCAGGGCTTTTATGGAGGCGCATCTTCCAGCTTTTAAGGAAAAGAACCCCCA CTTAGAGGTGGTGACAGAGTTAGTCCGTGGACAGCATCCTAACCTGAAGGGCATTTACAA AAATCATAATGAGCGAGTTGTTTGTGTCCGAAATTTAACGCCCCAGGACATACTATTGCA AGCTACCACGCTAAGGGATTCTCTGGGCAAGAAAGTGGTGAAGCTTGAAACCACACACGT TACAAAGCGCCCCCATTGGTTTAGGAACATTGACCACAAAACTGGAGATGTGATCATGT



consensusID : consensus_11171#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 489
fasta sequence
                              [CACATCTTCCAGCTTGTTAAGGAAAAGGACCCCCGACTTAGAGGTGGTGACAGAGTTAGTCCGTGGACACGCATCCTAACCTGAAGGGCATTTTACCATAGAATCATAATGAGCGAGATTGCTTTGTGTCCTGAAAATTTAGCGCCCGAGGACATACTATTGCAAGCTACCAGGCTAAGGAATTCTCTGGGCAGGAAAGTGGTGAACGCTGAGAACCAGACACGTAAC-AAGCGCCCCAGTGTTCAGGGAACATGGACGACAGAGCTGAAGATGTGATCATGTGAGTTGACCACGATTGGGTTCTCAGACAAGCTGCTGATGTTCTTTGATGTCGTGATTGCAGAACTGTTTTCATGTGCGTGTCAAGAATTAGTCAGTGCAGCTATTCGACTCACCTTTTTTTAGTGATTACAGTTCAACTTTGTCTTTTTGTTTCGTCCGGTATCTGATAATAACATGC-AACTTGGGTGTTCCTTGTTGTAAAAAAAA]

[+] EMBL BI796766             [CACATCTTCCAGCTTGTTAAGGAAAAGGACCCCCGACTTAGAGGTGGTGACAGAGTTAGTCCGTGGACACGCATCCTAACCTGAAGGGCATTTTACCATAGAATCATAATGAGCGAGATTGCTTTGTGTCCTGAAAATTTAGCGCCCGAGGACATACTATTGCAAGCTACCAGGCTAAGGAATTCTCTGGGCAGGAAAGTGGTGAACGCTGAGAACCAGACACGTAAC AAGCGCCCCAGTGTTCAGGGAACATGGACGACAGAGCTGAAGATGTGATCATGTGAGTTGACCACGATTGGGTTCTCAGACAAGCTGCTGATGTTCTTTGATGTCGTGATTGCAGAACTGTTTTCATGTGCGTGTCAAGAATTAGTCAGTGCAGCTATTCGACTCACCTTTTTTTAGTGATTACAGTTCAACTTTGTCTTTTTGTTTCGTCCGGTATCTGATAATAACATGC AACTTGGGTGTTCCTTGTTGTAAAAAAAA]
[+] EMBL C99504               [                          gaACCCCCCACTTAGAGNTGGTGACAGAGTTAGTCCGTGGACA GCANCCTAACCTGAAGGGCA TTTA CA AAAATCATAATGAGCGAG TTG TTTGTGTCC G AAATTTAGCGCCCGAGGACATACTATTGCAAGCTACCAGGCTAAGGAATTCTCTGGGCAGGAAAGTGGTGAA GCTGAGAACCAGACACGTAACAAAGCGCCCCAGTGTTCAGGGAACATGGACGACAGAACTGAAGATGTGATCATGTGAGTTGACCA G TTGGGTTCTCAGACAAGCTGCTGATGTTCTTTGATGTCGTGATTGCAGAACTGTTTTCATATGCGTGTCAAGAATTAGTCAGTGCAGCTATTCGACTCACCTTTTTTTAGTGATTACAGTTCAACTTTGTCTTTTTGTTTCGTCCGGTATCTGATAATAACATGCAAACTTGGGTGTTCCTTGTTGTAAAAA   ]


>consensus_11171#2 CACATCTTCCAGCTTGTTAAGGAAAAGGACCCCCGACTTAGAGGTGGTGACAGAGTTAGT CCGTGGACACGCATCCTAACCTGAAGGGCATTTTACCATAGAATCATAATGAGCGAGATT GCTTTGTGTCCTGAAAATTTAGCGCCCGAGGACATACTATTGCAAGCTACCAGGCTAAGG AATTCTCTGGGCAGGAAAGTGGTGAACGCTGAGAACCAGACACGTAACAAGCGCCCCAGT GTTCAGGGAACATGGACGACAGAGCTGAAGATGTGATCATGTGAGTTGACCACGATTGGG TTCTCAGACAAGCTGCTGATGTTCTTTGATGTCGTGATTGCAGAACTGTTTTCATGTGCG TGTCAAGAATTAGTCAGTGCAGCTATTCGACTCACCTTTTTTTAGTGATTACAGTTCAAC TTTGTCTTTTTGTTTCGTCCGGTATCTGATAATAACATGCAACTTGGGTGTTCCTTGTTG TAAAAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_11171#0      ---------------------------------------------------------GTC 3
consensus_11171#2      ------------------------------------------------------------
consensus_11171#1      CAGGAATTCGGCACGAGGCGCGCCGGCGGCGAGCAAGGTAAGGACTGATCGATTGGCTTG 60
                                                                                   

consensus_11171#0      GTCTCCTCCTCCGTTCGCCGTCTCCTCCCCCAACTCGCGCCCGGCGGGAGCAAGCGAAGC 63
consensus_11171#2      ------------------------------------------------------------
consensus_11171#1      GGCCGCTTGCATCCTCGTCTTCCTCATCCGGGGTCTCCGAATTTCCGCGTGCAGCGAAGC 120
                                                                                   

consensus_11171#0      GAAGTCCCCGTGTAGCTCCCGGTTTGGATCGACCCCGGCGGCGGCGGCAGGGATGGCGCT 123
consensus_11171#2      ------------------------------------------------------------
consensus_11171#1      GGAGTCCCCGTGTAGCTCCCGGTTTGGATCGACCCCGGCGGCGGCGGCAGGGATGGCGCT 180
                                                                                   

consensus_11171#0      GAGGGGCGTTTGGCAGCTGCAGAAGCTCGTGGTGAACTACTGCGATTGGGGAGGGAGCAG 183
consensus_11171#2      ------------------------------------------------------------
consensus_11171#1      GAGGGGCGTTTGGCAGCTGCAGAAGCTCGTGGTGAACTACTGCGATTGGGGAGGGAGCAG 240
                                                                                   

consensus_11171#0      CAGGGGGATCAGGGCTTTTATGGAGGCGCATCTTCCAGCTT-TTAAGGAAAAGAACCCCC 242
consensus_11171#2      --------------------------CACATCTTCCAGCTTGTTAAGGAAAAGGACCCCC 34
consensus_11171#1      CAGGGGGATCAGGGCTTTTATGGAGGCGCATCTTCCAGCTT-TTAAGGAAAAGAACCCCC 299
                                                 * ************* *********** ******

consensus_11171#0      -ACTTAGAGGTGGTGACAGAGTTAGTCCGTGGACA-GCATCCTAACCTGAAGGGCATTT- 299
consensus_11171#2      GACTTAGAGGTGGTGACAGAGTTAGTCCGTGGACACGCATCCTAACCTGAAGGGCATTTT 94
consensus_11171#1      -ACTTAGAGGTGGTGACAGAGTTAGTCCGTGGACA-GCATCCTAACCTGAAGGGCATTT- 356
                        ********************************** *********************** 

consensus_11171#0      ACAA--AAATCATAATGAGCGAG-TTG-TTTGTGTCC--GAAATTTAGCGCCCGAGGACA 353
consensus_11171#2      ACCATAGAATCATAATGAGCGAGATTGCTTTGTGTCCTGAAAATTTAGCGCCCGAGGACA 154
consensus_11171#1      ACAA--AAATCATAATGAGCGAG-TTG-TTTGTGTCC--GAAATTTAACGCCCCAGGACA 410
                       ** *   **************** *** *********   ******* ***** ******

consensus_11171#0      TACTATTGCAAGCTACCAGGCTAAGGAATTCTCTGGGCAGGAAAGTGGTGAA-GCTGAGA 412
consensus_11171#2      TACTATTGCAAGCTACCAGGCTAAGGAATTCTCTGGGCAGGAAAGTGGTGAACGCTGAGA 214
consensus_11171#1      TACTATTGCAAGCTACCACGCTAAGGGATTCTCTGGGCAAGAAAGTGGTGAA-GCTTGAA 469
                       ****************** ******* ************ ************ ***   *

consensus_11171#0      ACCAGACACGTAACAAAGCGCCCC-AGTGTTCAGGGAACATGGACGACAGAACTGAAGAT 471
consensus_11171#2      ACCAGACACGTAACAA-GCGCCCC-AGTGTTCAGGGAACATGGACGACAGAGCTGAAGAT 272
consensus_11171#1      ACCACACACGTTACAAAGCGCCCCCATTGGTTTAGGAACATTGACCACAAAACTGGAGAT 529
                       **** ****** **** ******* * ** *   ******* *** *** * *** ****

consensus_11171#0      GTGATCATGTGAGTTGACCA--GTTGGGTTCTCAGACAAGCTGCTGATGTTCTTTGATGT 529
consensus_11171#2      GTGATCATGTGAGTTGACCACGATTGGGTTCTCAGACAAGCTGCTGATGTTCTTTGATGT 332
consensus_11171#1      GTGATCATGT-------------------------------------------------- 539
                       **********                                                  

consensus_11171#0      CGTGATTGCAGAACTGTTTTCATATGCGTGTCAAGAATTAGTCAGTGCAGCTATTCGACT 589
consensus_11171#2      CGTGATTGCAGAACTGTTTTCATGTGCGTGTCAAGAATTAGTCAGTGCAGCTATTCGACT 392
consensus_11171#1      ------------------------------------------------------------
                                                                                   

consensus_11171#0      CACCTTTTTTTAGTGATTACAGTTCAACTTTGTCTTTTTGTTTCGTCCGGTATCTGATAA 649
consensus_11171#2      CACCTTTTTTTAGTGATTACAGTTCAACTTTGTCTTTTTGTTTCGTCCGGTATCTGATAA 452
consensus_11171#1      ------------------------------------------------------------
                                                                                   

consensus_11171#0      TAACATGCAAACTTGGGTGTTA------AAAAAAAAAA 681
consensus_11171#2      TAACATGCAA-CTTGGGTGTTCCTTGTTGTAAAAAAAA 489
consensus_11171#1      --------------------------------------
                                                             




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)