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Oryza sativa
cluster # 11173 cluster # 11173       Sequences # 8       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_11173#0 length = 1655 sequences # 6  
consensus_11173#1 length = 611 sequences # 1  
consensus_11173#2 length = 428 sequences # 1  

consensusID : consensus_11173#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 1655
fasta sequence
                              [TACTGTATACCGATAGGATGATCGAGGGGTTACTGGGCTTACAGGCCCATTTCGGTAGCTCTAAACAAAGTAGCCCAGGAAGCCTAGGTGGCCCAATAGCAACAAAACGGCAAAGCCCTAGCCTCTTAACAGGTCCAGCGCGCGCGAGCATCCTCACCCGCCGCCGCCGCCGTCGTCCACACGACCTCACCGCCGCCTCCTCTCCGCTCTCCGGCCGCCGGTCGCTCCGCCAACCCGACCCTCTCCCCTTCGTGGTGGAGCCAACCTTAACCATCCTACTCCGCGCGGGGCGAAGGCGTCCGGCGGTTGCAGGAGCCCGATGGACAGTGGCGGCACTGCCAGTCCTGCCGGCGTCGCCGGCGACGGCGCTGGTGGCCGGGGTTCGGTCTTCCGCGGAGATGACGCGCCGAAGCTGCTCGCCGCGTTGAAGGAGATGAAAGAAGGGCTCGACCTCGTCACCGGCAAGGTCAAGGCGCTCACCCGCAAGGTCAAGAAGAACCAGCTGCCGACGGCGGATGGGATTGGGTACCTGGAGGCAAAGCACCACCTGCTGCTGAGCTACTGCCAGGACATCGTCTACTATCTCCTCCGCAAGGCGAAGGGGCTCTCGGTGGAAGGTCACCCCGTCGTGCGGAGCCTTGTCGAGATCAGGCTGTTCTTGGAGAAGATTCGTCCCATAGACAAGAAGATGGAGTACCAAATCCAGAAGCTCACCAACGCCGCGGATAGCGGAGCTGCCCAGGAGAAGGTGCTAAATGCAGAAGCAAAGAGTAAGGATCAGCCTAAGGATGATGAAGACCTACTGAAGTATCGGCCGAACCCTGATATGATGGACTCTAAGATCGATCCTGCGGGGCAGGACAACGATGGCATCTATCGTCCACCAAAATTTATTGCTGCTACCATGGATGATGAGGATAAGCGCCATAAACAAGCTTCAAGGAAAGACAAAACATTAGCGCGAATGGCTACAGAAAGCTCTTACTTCAAAGAGATTATTGATGACGCTGCTGATAGACCTGAAGAGTTAAAGGAAACAGCAGGTGATGAAAGCAGGGAATTTACAAGGTATATGCGGCAGAGAGAGTTGCAAGAGAAACAAGAAGAGGAGCTGTTCACTCGAGCTCCGCTGACAAAACGTGATAAGCAGACGGAGAAGTGGATGAGAAAAGAGCTTCACGGGCTACGGGGCCTAACAGATGGATTCGATCTTGGAATTAACATGTTCGTCGATGGAGACAAGGATAATGATGTCGGTTCAACCGAACCCCATTTCAAGAGCGGAGGTCGGAGAAAACACCATAAAGGCAAGAGGAAGAGGCATTAGTGAACCCACAGATGGCGTTTCACACAGCAATGTCACATTCAAAACCAAAATTTTGATCTGTGCGAATTGAGTAGTATAAATGAGTGATTTTCTTCGGCATGAGAGCCATGTTGGTTAGAATCAGCAGGTTTTGTGCATCTATCTGTCAACTTGTTCTTCAGTACGCGGTTAAAAGATATTGATCGTCGATACTTAAGTCAATTGGTAATCTGTCGTTATGATTTTGTTTGTAATCCTGTGACTCATGATCATGCCAATTGCCAGATAGTGTTTCCGGAAAAAAACTGTACCACATTCTTGAATAACCGCTTGGTTTAAAACCAACGGC]

[+] EMBL CA753320             [TACTGTATACCGATAGGATGATCGAGGGGTTACTGGGCTTACAGGCCCATTTCGGTAGCTCTAAACAAAGTAGCCCAGGAAGCCTAGGTGGCCCAATAGCAACAAAACGGCAAAGCCCTAGCCTCTTAACAGGTCCAGCGCGCGCGAGCATCCTCACCCGCCGCCGCCGCCGTCGTCCACACGACCTCACCGCCGCCTCCTCTCCGCTCTCCGGCCGCCGGTCGCTCCGCCAACCCGACCCTCTCCCCTTCGTGGTGGAGCCAACCTTAACCATCCTACTCCGCGCGGGGCGAAGGCGTC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL AK103283             [                                                                                                                                                                   CCGCCGCCGTCGTCCACACGACCTCACCGCCGCCTCCTCTCCGCTCTCCGGCCGCCGGTCGCTCCGCCAACCCGACCCTCTCCCCTTCGTGGTGGAGCCAACCTTAACCATCCTACTCCGCGCGGGGCGAAGGCGTCCGGCGGTTGCAGGAGCCCGATGGACAGTGGCGGCACTGCCAGTCCTGCCGGCGTCGCCGGCGACGGCGCTGGTGGCCGGGGTTCGGTCTTCCGCGGAGATGACGCGCCGAAGCTGCTCGCCGCGTTGAAGGAGATGAAAGAAGGGCTCGACCTCGTCACCGGCAAGGTCAAGGCGCTCACCCGCAAGGTCAAGAAGAACCAGCTGCCGACGGCGGATGGGATTGGGTACCTGGAGGCAAAGCACCACCTGCTGCTGAGCTACTGCCAGGACATCGTCTACTATCTCCTCCGCAAGGCGAAGGGGCTCTCGGTGGAAGGTCACCCCGTCGTGCGGAGCCTTGTCGAGATCAGGCTGTTCTTGGAGAAGATTCGTCCCATAGACAAGAAGATGGAGTACCAAATCCAGAAGCTCACCAACGCCGCGGATAGCGGAGCTGCCCAGGAGAAGGTGCTAAATGCAGAAGCAAAGAGTAAGGATCAGCCTAAGGATGATGAAGACCTACTGAAGTATCGGCCGAACCCTGATATGATGGACTCTAAGATCGATCCTGCGGGGCAGGACAACGATGGCATCTATCGTCCACCAAAATTTATTGCTGCTACCATGGATGATGAGGATAAGCGCCATAAACAAGCTTCAAGGAAAGACAAAACATTAGCGCGAATGGCTACAGAAAGCTCTTACTTCAAAGAGATTATTGATGACGCTGCTGATAGACCTGAAGAGTTAAAGGAAACAGCAGGTGATGAAAGCAGGGAATTTACAAGGTATATGCGGCAGAGAGAGTTGCAAGAGAAACAAGAAGAGGAGCTGTTCACTCGAGCTCCGCTGACAAAACGTGATAAGCAGACGGAGAAGTGGATGAGAAAAGAGCTTCACGGGCTACGGGGCCTAACAGATGGATTCGATCTTGGAATTAACATGTTCGTCGATGGAGACAAGGATAATGATGTCGGTTCAACCGAACGCCATTTCAAGAGCGGAGGTCGGAGAAAACACCATAAAGGCAAGAGGAAGAGGCATTAGTGAACCCACAGATGGCGTTTCACACAGCAATGTCACATTCAAAACCAAAATTTTGATCTGTGCGAATTGAGTAGTATAAATGAGTGATTTTCTTCGGCATGAGAGCCATGTTGGTTAGAATCAGCAGGTTTTGTGCATCTATCTGTCAACTTGTTCTTCAGTACGCGGTTAAAAGATATTGATCGTCGATACTTAAGTCAATTGGTAATCTGTCGTTATGA                                                                                                           ]
[+] EMBL CA753048             [                                                                                                                                                                                                                                                                                                                                                                                                                        GAAGCTGCTCGCCGCGTTGAAGGAGATGAAAGAAGGGCTCGACCTCGTCACCGGCAAGGTCAAGGCGCTCACCCGCAAGGTCAAGAAGAACCAGCTGCCGACGGCGGATGGGATTGGGTACCTGGAGGCAAAGCACCACCTGCTGCTGAGCTACTGCCAGGACATCGTCTACTATCTCCTCCGCAAGGCGAAGGGGCTCTCGGTGGAAGGTCACCCCGTCGTGCGGAGCCTTGTCGAGATCAGGCTGTTCTTGGAGAAGATTCGTCCCATAGACAAGAAGATGGAGTACCAAATCC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL CA756541             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      TGATATGATGGACACTAAGATCGATCCTGCGGGGCAGGACAACGATGGCATCTATCGTCCACCAAAATTTATTGCTGCTACCATGGATGATGAGGATAAGCGCCATAAACAAGCTTCAAGGAAAGACAAAGCATTAGTGCGAATGGCTACAGAAAGCTCTTACTTCAAAGAGATTATTGATGACGCTGCTGATAGACCTGAAGAGTTAAAGGAAACAGCAGGTGATGAAAGCAGGGAATTTACAAGGTATATGCGGCAGAGAGAGTTGCAAGAGAAACAAGAAGAGGAGCTGTTCACTCGAGCTCCGCTGACAAAACGTGATAAGCAGACGGAGAAGCGGATGAGAAAAGAGCTTCACGGGCTACGGGGCCTAACAGATGGATTCGATCTTGGAATTAACATGTTCGTCGATGGAGACAAGGATAATGATGTCGGTTCAACCGAACCCCATTTCAAGAGCGGAGGTCGGAGAAAACACCATAAAGGCAAGAGGAAGAGGCATTAGTGAACCCACAGATGGCGTTTCACACAGCAATGTCACATTCAAAACCAAAATTTTGATCTGTGCGAATTGAGTAGTATAAATGAGTGATTTTCTTCGGCATGAGAGCCATGTTGGTTAGAATCAGC                                                                                                                                                                                                           ]
[-] EMBL CF308873             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          AAACAGCAGGTGATGAAAGCAGGGAATTTACAAGGTATATGCGGCAGAGAGAGTTGCAAGAGAAACAAGAAGAGGAGCTGTTCACTCGAGCTCCGCTGACAAAACGTGATAAGCAGACGGAGAAGTGGATGAGAAAAGAGCTTCACGGGCTACGGGGCCTAACAGATGGATTCGATCTTGGAATTAACATGTTCGTCGATGGAGACAAGGATAATGATGTCGGTTCAACCGAACCCCATTTCAAGAGCGGAGGTCGGAGAAAACACCATAAAGGCAAGAGGAAGAGGCATTAGTGAACCCACAGATGGCGTTTCACACAGCAATGTCACATTCAAAACCAAAATTTTGATCTGTGCGAATTGAGTAGTATAAATGAGTGATTTTCTTCGGCATGAGAGCCATGTTGGTTAGAATCAGCAGGTTTTGTGCATCTATCTGTCAACTTGTTCTTCAGTACGCGGTTAAAAGATATTGATCGTCGATACTTAAGTCAATTGGTAATCTGTCGTTATGATTTTGTTTGTAATCCTGTGACTCATGATCATGCCAATTGCCAGATAGTGTTTCCGGAAAAAAA                                            ]
[+] EMBL AK064047             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ACGGAGAAGTGGATGAGAAAAGAGCTTCACGGGCTACGGGGCCTAACAGATGGATTCGATCTTGGAATTAACATGTTCGTCGATGGAGACAAGGATAATGATGTCGGTTCAACCGAACCCCATTTCAAGAGCGGAGGTCGGAGAAAACACCATAAAGGCAAGAGGAAGAGGCATTAGTGAACCCACAGATGGCGTTTCACACAGCAATGTCACATTCAAAACCAAAATTTTGATCTGTGCGAATTGAGTAGTATAAATGAGTGATTTTCTTCGGCATGAGAGCCATGTTGGTTAGAATCAGCAGGTTTTGTGCATCTATCTGTCAACTTGTTCTTCAGTACGCGGTTAAAAGATATTGATCGTCGATACTTAAGTCAATTGGTAATCTGTCGTTATGATTTTGTTTGTAATCCTGTGACTCATGATCATGCCAATTGCCAGATAGTGTTTCCGGAATCCTCCTGTACCACATTCTTGAATAACCGCTTGGTTTAAAACCAACGGC]


>consensus_11173#0 TACTGTATACCGATAGGATGATCGAGGGGTTACTGGGCTTACAGGCCCATTTCGGTAGCT CTAAACAAAGTAGCCCAGGAAGCCTAGGTGGCCCAATAGCAACAAAACGGCAAAGCCCTA GCCTCTTAACAGGTCCAGCGCGCGCGAGCATCCTCACCCGCCGCCGCCGCCGTCGTCCAC ACGACCTCACCGCCGCCTCCTCTCCGCTCTCCGGCCGCCGGTCGCTCCGCCAACCCGACC CTCTCCCCTTCGTGGTGGAGCCAACCTTAACCATCCTACTCCGCGCGGGGCGAAGGCGTC CGGCGGTTGCAGGAGCCCGATGGACAGTGGCGGCACTGCCAGTCCTGCCGGCGTCGCCGG CGACGGCGCTGGTGGCCGGGGTTCGGTCTTCCGCGGAGATGACGCGCCGAAGCTGCTCGC CGCGTTGAAGGAGATGAAAGAAGGGCTCGACCTCGTCACCGGCAAGGTCAAGGCGCTCAC CCGCAAGGTCAAGAAGAACCAGCTGCCGACGGCGGATGGGATTGGGTACCTGGAGGCAAA GCACCACCTGCTGCTGAGCTACTGCCAGGACATCGTCTACTATCTCCTCCGCAAGGCGAA GGGGCTCTCGGTGGAAGGTCACCCCGTCGTGCGGAGCCTTGTCGAGATCAGGCTGTTCTT GGAGAAGATTCGTCCCATAGACAAGAAGATGGAGTACCAAATCCAGAAGCTCACCAACGC CGCGGATAGCGGAGCTGCCCAGGAGAAGGTGCTAAATGCAGAAGCAAAGAGTAAGGATCA GCCTAAGGATGATGAAGACCTACTGAAGTATCGGCCGAACCCTGATATGATGGACTCTAA GATCGATCCTGCGGGGCAGGACAACGATGGCATCTATCGTCCACCAAAATTTATTGCTGC TACCATGGATGATGAGGATAAGCGCCATAAACAAGCTTCAAGGAAAGACAAAACATTAGC GCGAATGGCTACAGAAAGCTCTTACTTCAAAGAGATTATTGATGACGCTGCTGATAGACC TGAAGAGTTAAAGGAAACAGCAGGTGATGAAAGCAGGGAATTTACAAGGTATATGCGGCA GAGAGAGTTGCAAGAGAAACAAGAAGAGGAGCTGTTCACTCGAGCTCCGCTGACAAAACG TGATAAGCAGACGGAGAAGTGGATGAGAAAAGAGCTTCACGGGCTACGGGGCCTAACAGA TGGATTCGATCTTGGAATTAACATGTTCGTCGATGGAGACAAGGATAATGATGTCGGTTC AACCGAACCCCATTTCAAGAGCGGAGGTCGGAGAAAACACCATAAAGGCAAGAGGAAGAG GCATTAGTGAACCCACAGATGGCGTTTCACACAGCAATGTCACATTCAAAACCAAAATTT TGATCTGTGCGAATTGAGTAGTATAAATGAGTGATTTTCTTCGGCATGAGAGCCATGTTG GTTAGAATCAGCAGGTTTTGTGCATCTATCTGTCAACTTGTTCTTCAGTACGCGGTTAAA AGATATTGATCGTCGATACTTAAGTCAATTGGTAATCTGTCGTTATGATTTTGTTTGTAA TCCTGTGACTCATGATCATGCCAATTGCCAGATAGTGTTTCCGGAAAAAAACTGTACCAC ATTCTTGAATAACCGCTTGGTTTAAAACCAACGGC



consensusID : consensus_11173#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 611
fasta sequence
                              [TGACTGGACTGAAGGAGTAGAAAGACGGCGGATGGGATTGGGTACCTGGAGGCAAAGCACCACCTGCTGCTGAGCTACTGCCAGGACATCGTCTACTATCTCCTCCGCAAGGCGAAGGGGCTCTCGGTGGAAGGTCACCCCGTCGTGCGGAGCCTTGTCGAGATCAGGCTGTTCTTGGAGAAGATTCGTCCCATAGACAAGAAGATGGAGTACCAAATCCAGAAGCTCACCAACGCCGCGGATAGCGGAGCTGCCCAGGAGAAGGTGCTAAATGCAGAAGCAAAGAGTAAGGATCAGCCTAAGGATGATGAAGACCTACTGAAGTATCGGCCGAACCCTGATATGATGGACTCTAAGATCGATNCCTGCGGGGCGGGACAACGATGGCATCTATCGTCCACCAAAATTTATTGCTGCTACCATGGATGATGAGGATAAGCGCCATAAACAAGCTTCAAGGAAAGACAAAACATTAGCGCGAATGGCTACAGAAAGCTCTTACTTCAAAGAGATTATTGATGACGCTGCTGATAGACCTGAAGAGTTAAAGGAAACAGCAGGTGATGAAAGCAGGGAATTTACAAGGTATATGCGGCAGAGAGAGTTGCAAG]

[+] EMBL CF308872             [TGACTGGACTGAAGGAGTAGAAAGACGGCGGATGGGATTGGGTACCTGGAGGCAAAGCACCACCTGCTGCTGAGCTACTGCCAGGACATCGTCTACTATCTCCTCCGCAAGGCGAAGGGGCTCTCGGTGGAAGGTCACCCCGTCGTGCGGAGCCTTGTCGAGATCAGGCTGTTCTTGGAGAAGATTCGTCCCATAGACAAGAAGATGGAGTACCAAATCCAGAAGCTCACCAACGCCGCGGATAGCGGAGCTGCCCAGGAGAAGGTGCTAAATGCAGAAGCAAAGAGTAAGGATCAGCCTAAGGATGATGAAGACCTACTGAAGTATCGGCCGAACCCTGATATGATGGACTCTAAGATCGATNCCTGCGGGGCGGGACAACGATGGCATCTATCGTCCACCAAAATTTATTGCTGCTACCATGGATGATGAGGATAAGCGCCATAAACAAGCTTCAAGGAAAGACAAAACATTAGCGCGAATGGCTACAGAAAGCTCTTACTTCAAAGAGATTATTGATGACGCTGCTGATAGACCTGAAGAGTTAAAGGAAACAGCAGGTGATGAAAGCAGGGAATTTACAAGGTATATGCGGCAGAGAGAGTTGCAAG]


>consensus_11173#1 TGACTGGACTGAAGGAGTAGAAAGACGGCGGATGGGATTGGGTACCTGGAGGCAAAGCAC CACCTGCTGCTGAGCTACTGCCAGGACATCGTCTACTATCTCCTCCGCAAGGCGAAGGGG CTCTCGGTGGAAGGTCACCCCGTCGTGCGGAGCCTTGTCGAGATCAGGCTGTTCTTGGAG AAGATTCGTCCCATAGACAAGAAGATGGAGTACCAAATCCAGAAGCTCACCAACGCCGCG GATAGCGGAGCTGCCCAGGAGAAGGTGCTAAATGCAGAAGCAAAGAGTAAGGATCAGCCT AAGGATGATGAAGACCTACTGAAGTATCGGCCGAACCCTGATATGATGGACTCTAAGATC GATNCCTGCGGGGCGGGACAACGATGGCATCTATCGTCCACCAAAATTTATTGCTGCTAC CATGGATGATGAGGATAAGCGCCATAAACAAGCTTCAAGGAAAGACAAAACATTAGCGCG AATGGCTACAGAAAGCTCTTACTTCAAAGAGATTATTGATGACGCTGCTGATAGACCTGA AGAGTTAAAGGAAACAGCAGGTGATGAAAGCAGGGAATTTACAAGGTATATGCGGCAGAG AGAGTTGCAAG



consensusID : consensus_11173#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 428
fasta sequence
                              [TCGTCGATGGCAGACAAGGATAATGATGCTCGGTTCAACCGCAACCCCATATTCAAGAGCGGAGCTCGGAGCACAACACCATAAAGAGCATAGAGTGAAGCACGAGCATTAGATGAACCCATCAGTAGTGGCGTTTCACAACAGCAATGTCACCACTTCAAGAACCAATGATTCTTGATTCTGTGTCGAACTTGATGCTACGTACTAAACTGAGTGATTTTGCTTCGGACATGAGAGACCATGGTTGGTTAGCATCAGACAGGATTTGTGTGCATCTATCTGTCCACCTTGTTCTTCAGCTACGCGGTTATAAAGATATTGATCGTCGATACTTAAGTCAATTGGTAATCTGTCGTTATGATTTTGTTTGTAATCCTGTGACTCATCGATCATGCCCATTGCCAGATAGTGTTTCCGGAAAAAAAAAA]

[+] EMBL BI804998             [TCGTCGATGGCAGACAAGGATAATGATGCTCGGTTCAACCGCAACCCCATATTCAAGAGCGGAGCTCGGAGCACAACACCATAAAGAGCATAGAGTGAAGCACGAGCATTAGATGAACCCATCAGTAGTGGCGTTTCACAACAGCAATGTCACCACTTCAAGAACCAATGATTCTTGATTCTGTGTCGAACTTGATGCTACGTACTAAACTGAGTGATTTTGCTTCGGACATGAGAGACCATGGTTGGTTAGCATCAGACAGGATTTGTGTGCATCTATCTGTCCACCTTGTTCTTCAGCTACGCGGTTATAAAGATATTGATCGTCGATACTTAAGTCAATTGGTAATCTGTCGTTATGATTTTGTTTGTAATCCTGTGACTCATCGATCATGCCCATTGCCAGATAGTGTTTCCGGAAAAAAAAAA]


>consensus_11173#2 TCGTCGATGGCAGACAAGGATAATGATGCTCGGTTCAACCGCAACCCCATATTCAAGAGC GGAGCTCGGAGCACAACACCATAAAGAGCATAGAGTGAAGCACGAGCATTAGATGAACCC ATCAGTAGTGGCGTTTCACAACAGCAATGTCACCACTTCAAGAACCAATGATTCTTGATT CTGTGTCGAACTTGATGCTACGTACTAAACTGAGTGATTTTGCTTCGGACATGAGAGACC ATGGTTGGTTAGCATCAGACAGGATTTGTGTGCATCTATCTGTCCACCTTGTTCTTCAGC TACGCGGTTATAAAGATATTGATCGTCGATACTTAAGTCAATTGGTAATCTGTCGTTATG ATTTTGTTTGTAATCCTGTGACTCATCGATCATGCCCATTGCCAGATAGTGTTTCCGGAA AAAAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_11173#0      TACTGTATACCGATAGGATGATCGAGGGGTTACTGGGCTTACAGGCCCATTTCGGTAGCT 60
consensus_11173#1      ------------------------------------------------------------
consensus_11173#2      ------------------------------------------------------------
                                                                                   

consensus_11173#0      CTAAACAAAGTAGCCCAGGAAGCCTAGGTGGCCCAATAGCAACAAAACGGCAAAGCCCTA 120
consensus_11173#1      ------------------------------------------------------------
consensus_11173#2      ------------------------------------------------------------
                                                                                   

consensus_11173#0      GCCTCTTAACAGGTCCAGCGCGCGCGAGCATCCTCACCCGCCGCCGCCGCCGTCGTCCAC 180
consensus_11173#1      ------------------------------------------------------------
consensus_11173#2      ------------------------------------------------------------
                                                                                   

consensus_11173#0      ACGACCTCACCGCCGCCTCCTCTCCGCTCTCCGGCCGCCGGTCGCTCCGCCAACCCGACC 240
consensus_11173#1      ------------------------------------------------------------
consensus_11173#2      ------------------------------------------------------------
                                                                                   

consensus_11173#0      CTCTCCCCTTCGTGGTGGAGCCAACCTTAACCATCCTACTCCGCGCGGGGCGAAGGCGTC 300
consensus_11173#1      ------------------------------------------------------------
consensus_11173#2      ------------------------------------------------------------
                                                                                   

consensus_11173#0      CGGCGGTTGCAGGAGCCCGATGGACAGTGGCGGCACTGCCAGTCCTGCCGGCGTCGCCGG 360
consensus_11173#1      ------------------------------------------------------------
consensus_11173#2      ------------------------------------------------------------
                                                                                   

consensus_11173#0      CGACGGCGCTGGTGGCCGGGGTTCGGTCTTCCGCGGAGATGACGCGCCGAAGCTGCTCGC 420
consensus_11173#1      ------------------------------------------------------------
consensus_11173#2      ------------------------------------------------------------
                                                                                   

consensus_11173#0      CGCGTTGAAGGAGATGAAAGAAGGGCTCGACCTCGTCACCGGCAAGGTCAAGGCGCTCAC 480
consensus_11173#1      ------------------------------------------------------------
consensus_11173#2      ------------------------------------------------------------
                                                                                   

consensus_11173#0      CCGCAAGGTCAAGAAGAACCAGCTGCCGACGGCGGATGGGATTGGGTACCTGGAGGCAAA 540
consensus_11173#1      TGACTGGACT--GAAGGAGTAGAAA--GACGGCGGATGGGATTGGGTACCTGGAGGCAAA 56
consensus_11173#2      ------------------------------------------------------------
                                                                                   

consensus_11173#0      GCACCACCTGCTGCTGAGCTACTGCCAGGACATCGTCTACTATCTCCTCCGCAAGGCGAA 600
consensus_11173#1      GCACCACCTGCTGCTGAGCTACTGCCAGGACATCGTCTACTATCTCCTCCGCAAGGCGAA 116
consensus_11173#2      ---------------------------------------------TCGTCGATGGCAGAC 15
                                                                     *  **   *  ** 

consensus_11173#0      GGGGCTCTCGGTGGAAGGTCACCCCGTCGTGCGGAGCCTTGTCGAGATCAGGCTGTTCTT 660
consensus_11173#1      GGGGCTCTCGGTGGAAGGTCACCCCGTCGTGCGGAGCCTTGTCGAGATCAGGCTGTTCTT 176
consensus_11173#2      AAGGATAATGATGCTCGGTTCAACCGCAACCC----CATATTCAAGAGCGGAG----CTC 67
                         ** *   * **   ***    ***     *    * *  ** *** * *      ** 

consensus_11173#0      GGAGAAGATTCGTCCCATAGACAAGAAGATGGAGTACCAAATCCAGAAGCTCACCAACGC 720
consensus_11173#1      GGAGAAGATTCGTCCCATAGACAAGAAGATGGAGTACCAAATCCAGAAGCTCACCAACGC 236
consensus_11173#2      GGAGCACA---ACACCATA---AAGAGCATAGAGTG--AAGCACGAGCATTAGATGAACC 119
                       **** * *      *****   ****  ** ****   **   *      *     *  *

consensus_11173#0      CGCGGATAGCGGAGCTGCCCAGGAGAA--GGTGCTAAATGCAGAAGCAAAGAGTAAGGAT 778
consensus_11173#1      CGCGGATAGCGGAGCTGCCCAGGAGAA--GGTGCTAAATGCAGAAGCAAAGAGTAAGGAT 294
consensus_11173#2      CATCAGTAGTGGCGTTTCACAACAGCAATGTCACCACTTCAAGAACCAATGATTCTTGAT 179
                       *     *** ** * * * **  ** *  *   * *  *  **** *** ** *   ***

consensus_11173#0      -CAGCCTAAGGATGATGAAGACCTACTGAAGTA--TCGGCCGAACCCTGATATGATGGAC 835
consensus_11173#1      -CAGCCTAAGGATGATGAAGACCTACTGAAGTA--TCGGCCGAACCCTGATATGATGGAC 351
consensus_11173#2      TCTGTGTCGAACTTGATGCTACGTACTAAACTGAGTGATTTTGCTTCGGACATGAGAGAC 239
                        * *  *     *       ** **** ** *   *          * ** ****  ***

consensus_11173#0      TCTAAGATCGATCC-TGCGGGGCAGGACAACGATGGCATCTATC-GTCCACCAAAATTTA 893
consensus_11173#1      TCTAAGATCGATNCCTGCGGGGCGGGACAACGATGGCATCTATC-GTCCACCAAAATTTA 410
consensus_11173#2      --CATGGTTGGTTAGCATCAGACAGGATT-TGTGTGCATCTATCTGTCCACC-----TTG 291
                          * * * * *        * * ***    *   ********* *******     ** 

consensus_11173#0      TTGCTGCTACCATG-GATGATGAGGATAAGCGCCATAAACAAGCTTCAAGGAAA-GACAA 951
consensus_11173#1      TTGCTGCTACCATG-GATGATGAGGATAAGCGCCATAAACAAGCTTCAAGGAAA-GACAA 468
consensus_11173#2      TT-CTTCAGCTACGCGGTTATAAAGATATTGATCGTCGATA--CTTAAGTCAATTGGTAA 348
                       ** ** *  * * * * * ** * ****     * *  * *  *** *   **  *  **

consensus_11173#0      AACATTAGCGCGAATGGCTACAGAAAGCTCTTACTTCAAAGAGATTATTGATGACGCTGC 1011
consensus_11173#1      AACATTAGCGCGAATGGCTACAGAAAGCTCTTACTTCAAAGAGATTATTGATGACGCTGC 528
consensus_11173#2      TCTGTCGTTATGATTTTGTTTGTAATCCTGTGACT-CATCGATCATGCCCATTGC-CAGA 406
                           *      ** *   *    **  ** * *** **  **   *    **  * * * 

consensus_11173#0      TGATAGACCTGAAGAGTTAAAGGAAACAGCAGGTGATGAAAGCAGGGAATTTACAAGGTA 1071
consensus_11173#1      TGATAGACCTGAAGAGTTAAAGGAAACAGCAGGTGATGAAAGCAGGGAATTTACAAGGTA 588
consensus_11173#2      TAGTGTTTCCGGAAAAAAAAAA-------------------------------------- 428
                       *  *    * * * *   ***                                       

consensus_11173#0      TATGCGGCAGAGAGAGTTGCAAGAGAAACAAGAAGAGGAGCTGTTCACTCGAGCTCCGCT 1131
consensus_11173#1      TATGCGGCAGAGAGAGTTGCAAG------------------------------------- 611
consensus_11173#2      ------------------------------------------------------------
                                                                                   

consensus_11173#0      GACAAAACGTGATAAGCAGACGGAGAAGTGGATGAGAAAAGAGCTTCACGGGCTACGGGG 1191
consensus_11173#1      ------------------------------------------------------------
consensus_11173#2      ------------------------------------------------------------
                                                                                   

consensus_11173#0      CCTAACAGATGGATTCGATCTTGGAATTAACATGTTCGTCGATGGAGACAAGGATAATGA 1251
consensus_11173#1      ------------------------------------------------------------
consensus_11173#2      ------------------------------------------------------------
                                                                                   

consensus_11173#0      TGTCGGTTCAACCGAACCCCATTTCAAGAGCGGAGGTCGGAGAAAACACCATAAAGGCAA 1311
consensus_11173#1      ------------------------------------------------------------
consensus_11173#2      ------------------------------------------------------------
                                                                                   

consensus_11173#0      GAGGAAGAGGCATTAGTGAACCCACAGATGGCGTTTCACACAGCAATGTCACATTCAAAA 1371
consensus_11173#1      ------------------------------------------------------------
consensus_11173#2      ------------------------------------------------------------
                                                                                   

consensus_11173#0      CCAAAATTTTGATCTGTGCGAATTGAGTAGTATAAATGAGTGATTTTCTTCGGCATGAGA 1431
consensus_11173#1      ------------------------------------------------------------
consensus_11173#2      ------------------------------------------------------------
                                                                                   

consensus_11173#0      GCCATGTTGGTTAGAATCAGCAGGTTTTGTGCATCTATCTGTCAACTTGTTCTTCAGTAC 1491
consensus_11173#1      ------------------------------------------------------------
consensus_11173#2      ------------------------------------------------------------
                                                                                   

consensus_11173#0      GCGGTTAAAAGATATTGATCGTCGATACTTAAGTCAATTGGTAATCTGTCGTTATGATTT 1551
consensus_11173#1      ------------------------------------------------------------
consensus_11173#2      ------------------------------------------------------------
                                                                                   

consensus_11173#0      TGTTTGTAATCCTGTGACTCATGATCATGCCAATTGCCAGATAGTGTTTCCGGAAAAAAA 1611
consensus_11173#1      ------------------------------------------------------------
consensus_11173#2      ------------------------------------------------------------
                                                                                   

consensus_11173#0      CTGTACCACATTCTTGAATAACCGCTTGGTTTAAAACCAACGGC 1655
consensus_11173#1      --------------------------------------------
consensus_11173#2      --------------------------------------------
                                                                   




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)