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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11184#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1186 fasta sequence
[ACTTCTCCTCTCTGACCACAGCACACACGCAACACCGGGACGGGCGATCCGGAAGGTTCTGGAACCTTCTAGAGGCTCGTAGGAGCCTCCGGCGGAACCCCTCTCGCCTCGCCTCGCCTCCGATGGGCTCGAAGCCGCCGCCGCCGCCGCAGCCCAGCGTCTCCTTCAAGCTCGTCCTCCTCGGCGACGGGAGAGTAGGCAAAACATCTCTTGTGCTGCGGTATGTGAATGATGTCTTCTCAGACAAACAGGAAGCAACTGTTCAAGCTTCATATTTGACAAAGCGCCTTGTTGTTGAAGGTGTGCCTATTACGCTCTCTATCTGGGATACAGCTGGACAAGAGAAGTTCCATGCACTAGGCCCTATATACTATCGTGATGCAGACGCTGCTCTTTTAGTATATGACATCACAGACAATGATACTTTTCTTCGTGTCACAAAGTGGGTGAAAGAGCTTAAGCAAATGGCAAATAAAGATATTGTTATGGCCATTGCAGCAAATAAAAGTGACCTGGTTAGATCAAAACACATAGACACTAATGAAGCAGCAAGCTATGCAGAAAGTATTGGGGCAACTCTCTTTGTTACTTCTGCCAAAGCTGGTACTGGGATTGATGATATCTTCAGTGACATAGCCAAGAGATTATTAGAGAGAAGAAAAAACAGCTCCGATGGCTTGTCACTGGCTCATCCAAAGAAAGGCATTTTAATCGTCGACGATGAACCTGAGAAAGAACCTCCACCAAAGTGCTGCTCATAGCGAGATTCCAATGCAAATCACGTGGGCATAATGTCATAGAAACCTGCAATTGATATGTGAAGGATCAAATCCTTGCATTAACTTTGCTCATGCTCTTTTGGAGCTCAGGAGCAATGCAAGTGTATACTGGTTGATTATTTTTAGCTTGTGTAAATACTAAACTCAGTTCATGAAATTGTTGTCAAATATAGTTGTTCGATGATGACGATTCGATATGCCGAAGAAGTTCATGGCCCTTTGTATATCTGTAACTCACAGGTTGCTTATTTACTAGCTGTTGTTTTGAGGGGGTTATTTTGATCATGTGCGTCGAAATAATTGTGTCGTGTTGACTGCTGAGTGTACATGTATCGTGGTTATTCCATCTGAACCTGCAATGTAAAGCTTCCGTCCCAATTCCCAAAAAAACAAAAAAAAAAAAAAAA]
[+] EMBL CF314178 [ACTTCTCCTCTCTGACCACAGCACACACGCAACACCGGGACGGGCGATCCGGAAGGTTCTGGAACCTTCTAGAGGCTCGTAGGAGCCTCCGGCGGAACCCCTCTCGCCTCGCCTCGCCTCCGATGGGCTCGAAGCCGCCGCCGCCGCCGCAGCCCAGCGTCTCCTTCAAGCTCGTCCTCCTCGGCGACGGGAGAGTAGGCAAAACATCTCTTGTGCTGCGGTATGTGAATGATGTCTTCTCAGACAAACAGGAAGCAACTGTTCAAGCTTCATATTTGACAAAGCGCCTTGTTGTTGAAGGTGTGCCTATTACGCTCTCTATCTGGGATACAGCTGGACAAGAGAAGTTCCATGCACTAGGCCCTATATACTATCGTGATGCAGACGCTGCTCTTTTAGTATATGACATCACAGACAATGATACTTTTCTTCGTGTCACAAAGTGGGTGAAAGAGCTTAAGCAAATGGCAAATAAAGATATTGTTATGGCCATTGCAGCAAATAAAAGTGACCTGGTTAGATCAAAACACATAGACACTAATGAAGCAGCAAGCTATGCAGAAAGTATTGGGGCAACTCTCT ]
[+] EMBL AK111385 [ TCTCCTCTCTGACCACAGCACACACGCAGCACCGGGACGGGCGATCCGGAAGGTTCTGGAACCTTCTAGAGGCTCGTAGGAGCCTCCGGCGGAACCCCTCTCGCCTCGCCTCGCCTCCGATGGGCTCGAAGCCGCCGCCGCCGCCGCAGCCCAGCGTCTCCTTCAAGCTCGTCCTCCTCGGCGACGGGAGAGTAGGCAAAACATCTCTTGTGCTGCGGTATGTGAATGATGTCTTCTCAGACAAACAGGAAGCAACTGTTCAAGCTTCATATTTGACAAAGCGCCTTGTTGTTGAAGGTGTGCCTATTACGCTCTCTATCTGGGATACAGCTGGACAAGAGAAGTTCCATGCACTAGGCCCTATATACTATCGTGATGCAGACGCTGCTCTTTTAGTATATGACATCACAGACAATGATACTTTTCTTCGTGTCACAAAGTGGGTGAAAGAGCTTAAGCAAATGGCAAATAAAGATATTGTTATGGCCATTGCAGCAAATAAAAGTGACCTGGTTAGATCAAAACACATAGACACTAATGAAGCAGCAAGCTATGCAGAAAGTATTGGGGCAACTCTCTTTGTTACTTCTGCCAAAGCTGGTACTGGGATTGATGATATCTTCAGTGACATAGCCAAGAGATTATTAGAGAGAAGAAAAAACAGCTCCGATGGCTTGTCACTGGCTCATCCAAAGAAAGGCATTTTAATCGTCGACGATGAACCTGAGAAAGAACCTCCACCAAAGTGCTGCTCATAGCGAGATTCCAATGCAAATCACGTGGGCATAATGTCATAGAAACCTGCAATTGATATGTGAAGGATCAAATCCTTGCATTAACTTTGCTCATGCTCTTTTGGAGCTCAGGAGCAATGCAAGTGTATACTGGTTGATTATTTTTAGCTTGTGTAAATACTAAACTCAGTTCATGAAATTGTTGTCAAATATAGTTGTTCGATGATGACGATTCGATATGCCGAAGAAGTTCATGGCCCTTTGTATATCTGTAACTCACAGGTTGCTTATTTACTAGCTGTTGTTTTGAGGGGGTTATTTTGATCATGTGCGTCGAAATAATTGTGTCGTGTTGACTGCTGAGTGTACATGTATCGTGGTTATTCCATCTGAACCTGCAATGTAAAGCTTCCGTCCCAATTCCCAAAAAAACAAAAAAAAAAAAAAAA]
[+] EMBL CK085060 [ CTCTCTGACCACAGCACACACGCAACACCGGGACGGGCGATCCGGAAGGTTCTGGAACCTTCTAGAGGCTCGTAGGAGCCTCCGGCGGAACCCCTCTCGCCTCGCCTCGCCTCCGATGGGCTCGAAGCCGCCGCCGCCGCCGCAGCCCAGCGTCTCCTTCAAGCTCGTCCTCCTCGGCGACGGGAGAGTAGGCAAAACATCTCTTGTGCTGCGGTATGTGAATGATGTCTTCTCAGACAAACAGGAAGCAACTGTTCAAGCTTCATATTTGACAAAGCGCCTTGTTGTTGAAGGTGTGCCTATTACGCTCTCTATCTGGGATACAGCTGGACAAGAGAAGTTCCATGCACTAGGCCCTATATACTATCGTGATGCAGACGCTGCTCTTTTAGTATATGACATCACAGACAATGATACTTTTCTTCGTGTCACAAAGTGGGTGAAAGAGCTTAAGCAAATGGCAAATAAAGATATTGTTATGGCCATTGCAGCAAATAAAAGTGACCTGGTTAGATCAAAACACATAGACACTAATGAAGCAGCAAGCTATGCAGAAAGTATTG ]
[-] EMBL CF314179 [ AAAGAGCTTAAGCAAATGGCAAATAAAGATATTGTTATGGCCATTGCAGCAAATAAAAGTGACCTGGTTAGATCAAAACACATAGACACTAATGAAGCAGCAAGCTATGCAGAAAGTATTGGGGCAACTCTCTTTGTTACTTTTGCCAAAGCTGGTACTGGGATTGATGATATCTTCAGTGACATAGCCAAGAGATTATTAGAGAGAAGAAAAAACAGCTCCGATGGCTTGTCACTGGCTCATCCAAAGAAAGGCATTTTAATCGTCGACGATGAACCTGAGAAAGAACCTCCACCAAAGTGCTGCTCATAGCGAGATTCCAATGCAAATCACGTGGGCATAATGTCATAGAAACCTGCAATTGATATGTGAAGGATCAAATCCTTGCATTAACTTTGCTCATGCTCTTTTGGAGCTCAGGAGCAATGCAAGTGTATACTGGTTGATTATTTTTAGCTTGTGTAAATACTAAACTCAGTTCATGAAATTGTTGTCAAATATAGTTGTTCGATGAaaaaaaaaa ]
consensusID : consensus_11184#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 794 fasta sequence
[CGACGGGAGAGTAGGCAAAACATCTCTTGTGCTGCGGTATGTGAATGATGTCTTCTCAGACAAACAGGAAGCAACTGTGCAAGCTTCATATTTGACAAAGCGCCTTGTTGTTGAAGGATACAGCTGGACAAGAGAAGTTCCATGCACTAGGCCCTATATACTATCGTGATGCAGACGCTGCTCTTTTAGTATATGACATCACAGACAATGATACTTTTCTTCGTGTCACAAAGTGGGTGAAAGAGCTTAAGCAAATGGCAAATAAAGATATTGTTATGGCCATTGCAGCAAATAAAAGTGACCTGGTTAGATCAAAACACATAGACACTAATGAAGCAGCAAGCTATGCAGAAAGTATTGGGGCAACTCTCTTTGTTACTTCTGCCAAAGCTGGTACTGGGATTGATGATATCTTCAGTGACATAGCCAAGAGATTATTAGAGAGAAGAAAAAACAGCTCCGATGGCTTGTCACTGGCTCATCCAAAGAAAGGCATTTTAATCGCCGACGATGAACCTGAGAAAGAACCT-CCACCAAAGTGCTGCTCATAGCGAGATTCCAATGCAAATCACGTGGGCATAATGTCATAGAAACCTGCAATTGATATGTGAAGTATCAAATCCTTGCATTAACTTTGCTCATGCTCTTTTGGAGCTCAGGAGCAATGCAAGTGTATACTGGTTGATTATTTTTAGCTTGTGTAAATACTAAACTCAGTTCATGAAATTGTTGTCAAATATAGTTGTTCGATGATGACGATTCGATAAAAAAAAAAAAAAAAAAAAAATTTAACA]
[+] EMBL CF328127 [CGACGGGAGAGTAGGCAAAACATCTCTTGTGCTGCGGTATGTGAATGATGTCTTCTCAGACAAACAGGAAGCAACTGTGCAAGCTTCATATTTGACAAAGCGCCTTGTTGTTGAAGGATACAGCTGGACAAGAGAAGTTCCATGCACTAGGCCCTATATACTATCGTGATGCAGACGCTGCTCTTTTAGTATATGACATCACAGACAATGATACTTTTCTTCGTGTCACAAAGTGGGTGAAAGAGCTTAAGCAAATGGCAAATAAAGATATTGTTATGGCCATTGCAGCAAATAAAAGTGACCTGGTTAGATCAAAACACATAGACACTAATGAAGCAGCAAGCTATGCAGAAAGTATTGGGGCAACTCTCTTTGTTACTTCTGCCAAAGCTGGTACTGGGATTGATGATATCTTCAGTGACATAGCCAAGAGATTATTAGAGAGAAGAAAAAACAGCTCCGATGGCTTGTCACTGGCTCATCCAAAGAAAGGCATTTTAATCGCCGACGATGAACCTGAGAAAGAACCT CCACCAAAGTGCTGCTCATAGCGAGATTCCAATGCAAATCACGTGGGC ]
[-] EMBL CF329230 [ ATGGCAAATAAAGATATTGTTATGGCCATTGCAGCAAATAAAAGTGACCTGGTTAGATCAAAACACATAGACCCTAATGAAGCAGCAAGCTATGCAGAAAGTATTGGGGCAACTCTCTTTGTTACTTTTGCCAAAGCTGGTACTGGGATTGATGATATCTTCAGTGACATAGCCAAGAGATTATTAGAGAGAAGAAAAAACAGCTCCGATGGCTTGTCACTGGCTCATCCAAAGAAAGGCATTTTAATCGTCGACGATGAACCTGAGAAAGAACCTCCCCCCAAAGTGCTGCTTATAGCGAGATTCCAATGCAAATCACGTGGGCATAATGTCATAGAAACCTGCAATTGATATGTGAAGTATCAAATCCTTGCATTAACTTTGCTCATGCTCTTTTGGAGCTCAGGAGCAATGCAAGTGTATACTGGTTGATTATTTTTAGCTTGTGTAAATACTAAACTCAGTTCATGAAATTGTTGTCAAATATAGTTGTTCGATGATGACGATTCGATAAAAAAAAAAAAAAAAAAA ]
[-] EMBL CF328128 [ GGCTTGTCATTGGTTCATCCAAAGAAAGGCATTTTAATCGCCGACGATAAACCTGAGAAAGAACCT CCACCAAAGTTCTGCTCATAGCGAGATTCCAATGCAAATCACGTGGGCATAATGTCATAGAAACCTGCAATTTATATGTGAAGGATCAAATCCTTGCATTAACTTTGCTCATGCTCTTTTGGAGCTCAGGAGCAATGCAAGTGTATACTGGTTGATTATTTTTAGCTTGTGTAAATAATTAACCCAGTTCATGAAATTGTTGTCAAATATAGTTGTTCGAAGATGACGATTCGATAAAAAAAAAAAAAAAAAAAAAATTTAACA]
consensusID : consensus_11184#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 393 fasta sequence
[CTGCCAAAGCTGGCACTGGGNTTGATGATATCTTCAGTGACATAGCCAAGAGTAAGTCTTATTGTGTTAGCTATTGCTTTCAATTCATCTCCACATTTTTGCCACTTTAACAAATACTGCTTTGCCAAAACTTATAAGTTGTAACATTCAGCTATTCCATTAGAATGCGGGGTCATCAACGNTAGCATATAGTTTAGTTAACAATTTCATGNTTCACTCTATTGAGCAGATTTCCGTCATCAAACTCAATTGTTATTCCTCAGATTAATCCATTGTATAACACCTCAATATTTGCGNTTCCCCCTCTTCATCCTCAAATAACAAGGGTGGGGGATGGGCCCCCCATGTCAAATTGGGATTAGGAATTGCTGNAATTTCGGAGGTGGGCTAATG]
[+] EMBL D43204 [CTGCCAAAGCTGGCACTGGGNTTGATGATATCTTCAGTGACATAGCCAAGAGTAAGTCTTATTGTGTTAGCTATTGCTTTCAATTCATCTCCACATTTTTGCCACTTTAACAAATACTGCTTTGCCAAAACTTATAAGTTGTAACATTCAGCTATTCCATTAGAATGCGGGGTCATCAACGNTAGCATATAGTTTAGTTAACAATTTCATGNTTCACTCTATTGAGCAGATTTCCGTCATCAAACTCAATTGTTATTCCTCAGATTAATCCATTGTATAACACCTCAATATTTGCGNTTCCCCCTCTTCATCCTCAAATAACAAGGGTGGGGGATGGGCCCCCCATGTCAAATTGGGATTAGGAATTGCTGNAATTTCGGAGGTGGGCTAATG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_11184#0 ACTTCTCCTCTCTGACCACAGCACACACGCAACACCGGGACGGGCGATCCGGAAGGTTCT 60
consensus_11184#1 ------------------------------------------------------------
consensus_11184#2 ------------------------------------------------------------
consensus_11184#0 GGAACCTTCTAGAGGCTCGTAGGAGCCTCCGGCGGAACCCCTCTCGCCTCGCCTCGCCTC 120
consensus_11184#1 ------------------------------------------------------------
consensus_11184#2 ------------------------------------------------------------
consensus_11184#0 CGATGGGCTCGAAGCCGCCGCCGCCGCCGCAGCCCAGCGTCTCCTTCAAGCTCGTCCTCC 180
consensus_11184#1 ------------------------------------------------------------
consensus_11184#2 ------------------------------------------------------------
consensus_11184#0 TCGGCGACGGGAGAGTAGGCAAAACATCTCTTGTGCTGCGGTATGTGAATGATGTCTTCT 240
consensus_11184#1 ----CGACGGGAGAGTAGGCAAAACATCTCTTGTGCTGCGGTATGTGAATGATGTCTTCT 56
consensus_11184#2 ------------------------------------------------------------
consensus_11184#0 CAGACAAACAGGAAGCAACTGTTCAAGCTTCATATTTGACAAAGCGCCTTGTTGTTGAAG 300
consensus_11184#1 CAGACAAACAGGAAGCAACTGTGCAAGCTTCATATTTGACAAAGCGCCTTGTTGTTGAAG 116
consensus_11184#2 ------------------------------------------------------------
consensus_11184#0 GTGTGCCTATTACGCTCTCTATCTGGGATACAGCTGGACAAGAGAAGTTCCATGCACTAG 360
consensus_11184#1 G--------------------------ATACAGCTGGACAAGAGAAGTTCCATGCACTAG 150
consensus_11184#2 ------------------------------------------------------------
consensus_11184#0 GCCCTATATACTATCGTGATGCAGACGCTGCTCTTTTAGTATATGACATCACAGACAATG 420
consensus_11184#1 GCCCTATATACTATCGTGATGCAGACGCTGCTCTTTTAGTATATGACATCACAGACAATG 210
consensus_11184#2 ------------------------------------------------------------
consensus_11184#0 ATACTTTTCTTCGTGTCACAAAGTGGGTGAAAGAGCTTAAGCAAATGGCAAATAAAGATA 480
consensus_11184#1 ATACTTTTCTTCGTGTCACAAAGTGGGTGAAAGAGCTTAAGCAAATGGCAAATAAAGATA 270
consensus_11184#2 ------------------------------------------------------------
consensus_11184#0 TTGTTATGGCCATTGCAGCAAATAAAAGTGACCTGGTTAGATCAAAACACATAGACACTA 540
consensus_11184#1 TTGTTATGGCCATTGCAGCAAATAAAAGTGACCTGGTTAGATCAAAACACATAGACACTA 330
consensus_11184#2 ------------------------------------------------------------
consensus_11184#0 ATGAAGCAGCAAGCTATGCAGAAAGTATTGGGGCAACTCTCTTTGTTACTTCTGCCAAAG 600
consensus_11184#1 ATGAAGCAGCAAGCTATGCAGAAAGTATTGGGGCAACTCTCTTTGTTACTTCTGCCAAAG 390
consensus_11184#2 ---------------------------------------------------CTGCCAAAG 9
*********
consensus_11184#0 CTGGTACTGGGATTGATGATATCTTCAGTGACATAGCCAAGAGATTATTAGAGAGAAGAA 660
consensus_11184#1 CTGGTACTGGGATTGATGATATCTTCAGTGACATAGCCAAGAGATTATTAGAGAGAAGAA 450
consensus_11184#2 CTGGCACTGGGNTTGATGATATCTTCAGTGACATAGCCAAGAGTAAGTCTTATTGTGTTA 69
**** ****** ******************************* * * * *
consensus_11184#0 AAAACAGCTCCGATGGCTTGTCACTGGCTCATCCAAAGAAAGGCATTTTAATCGTCGACG 720
consensus_11184#1 AAAACAGCTCCGATGGCTTGTCACTGGCTCATCCAAAGAAAGGCATTTTAATCGCCGACG 510
consensus_11184#2 GCTATTGCTTTCAATTCATCTCCACATTTTTGCCACTTTAACAAATACTG--CTTTGCCA 127
* *** * * * ** * *** ** ** * * * *
consensus_11184#0 ATGAACCTGAGAAAGAACCTCCACCAAAGTGCTGCTCATAGCGAGATTCCAATGCAAATC 780
consensus_11184#1 ATGAACCTGAGAAAGAACCTCCACCAAAGTGCTGCTCATAGCGAGATTCCAATGCAAATC 570
consensus_11184#2 AAACTTATAAGTTGTAACATTCAGCTATTCCATTAGAATGCGGGGTCATCAACGNTAGC- 186
* * ** *** * ** * * * ** * * *** * *
consensus_11184#0 ACGTGGGCATAATGTCATAGAAACCTGCAATTGATATGTGAAGGATCAAATCCTTG-CAT 839
consensus_11184#1 ACGTGGGCATAATGTCATAGAAACCTGCAATTGATATGTGAAGTATCAAATCCTTG-CAT 629
consensus_11184#2 ------ATATAGTTTAGTTAACAATTTCATGNTTCACTCTATTGAGCAGATTTCCGTCAT 240
*** * * * * * * ** * * * ** ** * ***
consensus_11184#0 TAACTTTGCTCATGCTCTTTTGGAGC--TCAGGAGCAATGCAAGTGTATACTGGTTGATT 897
consensus_11184#1 TAACTTTGCTCATGCTCTTTTGGAGC--TCAGGAGCAATGCAAGTGTATACTGGTTGATT 687
consensus_11184#2 CAAACTCAATTGTTATTCCTCAGATTAATCCATTGTATAACACCTCAATATTTGCGNTTC 300
** * * * * * ** ** * * ** * *** * * *
consensus_11184#0 ATTTTTAGCTTGTGTAAATACTAAACTCAGTTCATGAAATTGT--TGTCAAATATAGTTG 955
consensus_11184#1 ATTTTTAGCTTGTGTAAATACTAAACTCAGTTCATGAAATTGT--TGTCAAATATAGTTG 745
consensus_11184#2 CCCCTCTTCATCCTCAAATAACAAGGGTGGGGGATGGGCCCCCCATGTCAAATTGGGATT 360
* * * ***** ** * *** ******** * *
consensus_11184#0 TTCGATGATGACGATTCGATATGCCGAAGAAGTTCATGGCCCTTTGTATATCTGTAACTC 1015
consensus_11184#1 TTCGATGATGACGATTCGATAAAAAAAAAAAAAAAAAAAAAATTTA-ACA---------- 794
consensus_11184#2 AGGAATTGCTGNAATTTCGGAGGTGGGCTAATG--------------------------- 393
** *** * **
consensus_11184#0 ACAGGTTGCTTATTTACTAGCTGTTGTTTTGAGGGGGTTATTTTGATCATGTGCGTCGAA 1075
consensus_11184#1 ------------------------------------------------------------
consensus_11184#2 ------------------------------------------------------------
consensus_11184#0 ATAATTGTGTCGTGTTGACTGCTGAGTGTACATGTATCGTGGTTATTCCATCTGAACCTG 1135
consensus_11184#1 ------------------------------------------------------------
consensus_11184#2 ------------------------------------------------------------
consensus_11184#0 CAATGTAAAGCTTCCGTCCCAATTCCCAAAAAAACAAAAAAAAAAAAAAAA 1186
consensus_11184#1 ---------------------------------------------------
consensus_11184#2 ---------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||