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Oryza sativa
cluster # 11189 cluster # 11189       Sequences # 8       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_11189#0 length = 1067 sequences # 6  
consensus_11189#1 length = 258 sequences # 2  

consensusID : consensus_11189#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 1067
fasta sequence
                              [AAATTACATCTCCTACACCAATTTTTTTTCCTGTATGTTCTTCCGCATGTGCTAGCTAGCTTAGTAGCTTGAGCTCCATCGGTTTTGGTTGAGCTCCTGCTTCAGCTTGCCTCATGCCAGCATGCGCATGGTGCGGTCTGCTGCTCATGTGTTCTCTTCTTTCCAACATTTATCCTACTCGTTGCTCCTTAAGGTACGTACTGGGGCAGCGTGATGCCCGTGACTCAGCACTTAGGCAGTGAAGGGGATGGAGCGCAGGTGCAGTACGAGGCGACGCTGGCGTACTCGGGTGCAGTCGCGGGGGTGACGATCGAGGAACTAGCTGGCCGGACATCGTCATGGTCTTCGGTCTCCTACGTGC-TCGACCTGGGGTTCGTCCACCCACACCACGCTGCCCATGCTTGCCTTCTATGGGAGCGGCGAGCGCCATGCCTACCTTGCCCCCTGCAGAACATCATCGCCACAGCCGCACGGCCACACCTACCACCGCACACTCGTGGCCTCTATATATCGCTCACAGCTTCGCTGACAACATCGATCTGCATCTCATGTATGAGTGGATGTGTGCCATGCTGCCATAGCACCAAGGAGGTTTCTGCGACCGCATTTGAGGATTTAAATGAAGCACATTCTAGAAGGCCAGAACAAGGTAAGGTGGGTGAGTTGGGTCACGTCCCAGGATCGGAGGACCAGGGACGCGAAGCGTGAGTGGCAGGGCGCCGACGTCGAGGTCTCCAACAGTACGGTATTGCTCCAATGAGCAGTTGGGACCTTGGGAGCTGGGGTTATTGCCGCGAGGATGGTGCTTCTCTTTGTGTTGACTGTTGACAACGACTAGCCATCGGATTTGGATTCTGGAGGTAGTCTTTAGCATTTTCAAATTTTCCGATTGTACCTAAGTATCTCTATGTAATTGGGAGTGTGCCAACGTCATATACAGTTGAGCACTAAACCTAACTTTACACTTATATACTTTTTGTTCAATTGTTATATGGCATTGTATACAAATGTTTAATTAGG--ATATATATATATATGGCATTTAGTAGTGAAAAAAACGAGTTAAAAAA]

[+] EMBL AK103636             [AAATTACATCTCCTACACCAATTTTTTTTCCTGTATGTTCTTCCGCATGTGCTAGCTAGCTTAGTAGCTTGAGCTCCATCGGTTTTGGTTGAGCTCCTGCTTCAGCTTGCCTCATGCCAGCATGCGCATGGTGCGGTCTGCTGCTCATGTGTTCTCTTCTTTCCAACATTTATCCTACTCGTTGCTCCTTAAGGTACGTACTGGGGCAGCGTGATGCCCGTGACTCAGCACTTAGGCAGTGAAGGGGATGGAGCGCAGGTGCAGTACGAGGCGACGCTGGCGTACTCGGGTGCAGTCGCGGGGGTGACGATCGAGGAACTAGCTGGCCGGACATCGTCATGGTCTTCGGTCTCCTACGTGC TCGACCTGGGGTTCGTCCACCCACACCACGCTGCCCATGCTTGCCTTCTATGGGAGCGGCGAGCGCCATGCCTACCTTGCCCCCTGCAGAACATCATCGCCACAGCCGCACGGCCACACCTACCACCGCACACTCGTGGCCTCTATATATCGCTCACAGCTTCGCTGACAACATCGATCTGCATCTCATGTATGAGTGGATGTGTGCCATGCTGCCATAGCACCAAGGAGGTTTCTGCGACCGCATTTGAGGATTTAAATGAAGCACATTCTAGAAGGCCAGAACAAGGTAAGGTGGGTGAGTTGGGTCACGTCCCAGGATCGGAGGACCAGGGACGCGAAGCGCGAGTGGCAGGGCGCCGACGTCGAGGTCTCCAACAGTACGGTATTGCTCCAATGAGCAGTTGGGACCTTGGGAGCTGGGGTTATTGCCGCGAGGATGGTGCTTCTCTTTGTGTTGACTGTTGACAACGACTAGCCATCGGATTTGGATTCTGGAGGTAGTCTTTAGCATTTTCAAATTTTCCGATTGTACCTAAGTATCTCTATGTAATTGGGAGTGTGCCAACGTCATATACAGTTGAGCACTAAACCTAACTTTACACTTATATACTTTTTGTTCAATTGTTATATGGCATTGTATACAAATGTTTAATTAGG  ATATATATATATATGGCA                             ]
[+] EMBL CF327566             [AAATTACATCTCCTACACCAATTTTTTTTCCTGTATGTTCTTCCGCATGTGCTAGCTAGCTTAGTAGCTTGAGCTCCATCGGTTTTGGTTGAGCTCCTGCTTCAGCTTGCCTCATGCCAGCATGCGCATGGTGCGGTCTGCTGCTCATGTGTTCTCTTCTTTCCAACATTTATCCTACTCGTTGCTCCTTAAGGTACGTACTGGGGCAGCGTGATGCCCGTGACTCAGCACTTAGGCAGTGAAGGGGATGGAGCGCAGGTGCAGTACGAGGCGACGCTGGCGTACTCGGGTGCAGTCGCGGGGGTGACGATCGAGGAACTAGCTGGCCGGACATCGTCATGGTCTTCGGTCTCCTACGTGC TCGACCTGGGGTTCGTCCACCCACACCACGCTGCCCATGCTTGCCTTCTATGGGAGCGGCGAGCGCCATGCCTACCTTGCCCCCTGCAGAACATCATCGCCACAGCCGCACGGGCACACCTACCACCGCACACTCGTGGCCTCTATATATCGCTCACAGCTTCGCTGACAACATCGATCTGCATCTCATGTATGAGTGGATGTG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL OSS4908A             [          TCCTACACCAATTTTTTTTCCTGTATGTTCTTCCGCATGTGCTAGCTAGCTTAGTAGCTTGAGCTCCATCGGTTTTGGTTGAGCTCCTGCTTCAGCTTGCCTCATGCCAGCATGCGCATGGTGCGGTCTGCTGCTCATGTGTTCTCTTCTTTCCAACATTTATCCTACTCGTTGCTCCTTAAGGTACGTACTGGGGCAGCGTGATGCCCGTNACTCAGCACTTAGGCAGTGAAGGGGATGGAGCGCAGGTGCAGTACGAGGCGACGCTGGCGTACTCGGGTGCAGTCGCGGGGGTGACGATCGAGGAACTAGCTGGCCGGACATCGTCATGGTCTTCGGTCTCCTACGTGCTTCGACCTGGGGTTCGTCCACCCACAACACGNTGCCCATGCTTNCCTTCTATGGGAGCGGNGAGCGCAATGCCTACCTTTGCCCCTG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL AU088727             [                                                                                                                                                                                                                                                                                                                                                                             ACTTGGGGTTCGTCCACCCACACCACGCTGCCCATGCTTGCCTTCTATGGGAGCGNCGAGCGCCATGCCTACCTTGCCCCNTGCAGAACATCATCGCCACAGCCGCACGGCCACACCTACCACCGCACACTCGTGGCCTCTATATATCGCTC CANNTTCGCTGACAACATCGATCTGCATCTCATGTATGAGTGGATGTGTGCCATGCTGCCATAGCACCAAGGAGGTTTCTGCGACCGCATTTGAGGATTTAAATGAAGCACATTCTAGAAGGCCAGAACAAGGTAAGGTGGGTGAGTTGGGTCACGTCCCAGGATCGGAGGACCAGGGACGCGAAGCGTGAGTGGCAGGGCGCCGACGTCGAGGTCTCCAACAGTACGGTATTGCTCCAATGAGCAGTTGGGACCTTGGGAGCTGGGGTTATTGCCGCGAGGATGGTGCTTCTCTTTGTGTTGACTGTTGACAACGACTAGCCATCGGATTTGGATTCTGGAGGTAGTCTTTAGCATTTTCAAATTTTCCGATTGTACCTAAGTATCTCTATGTAATTGGGAGTGTGCCAACGTCATATACAGTTGAGCACTAAACCTAACTTTACACTTATATACTTTTTGTTCAATTGTTATATGGCATTGTATACAAATGTTTAATTAGG  ATATATATATATATGGCATTTAGTAGTGAAAAAAA            ]
[-] EMBL CF327567             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              TGGATGTGTGCCATGCTGCCATAGCACCAAGGAGGTTTCTGCGACCGCATTTGAGGATTTAAATGAAGCACATTCTAGAAGGCCAGAACAAGGTAAGGTGGGTGAGTTGGGTCACGTCCCAGGATCGGAGGACCAGGGACGCGAAGCGTGAGTGGCAGGGCGCCGACGTCGAGGTCTCCAACAGTACGGTATTGCTCCAATGAGCAGTTGGGACCTTGGGAGCTGGGGTTATTGCCGCGAGGATGGTGCTTCTCTTTGTGTTGACTGTTGACAACGACTAGCCATCGGATTTGGATTCTGGAGGTAGTCTTTAGCATTTTCAAATTTTCCGATTGTACCTAAGTATCTCTATGTAATCGGGAGTGTGCCAACGTCATATACAGTTGAGCACTAAACCTAACTTTACACTTATATACTTTTTGTTCAATTGTTATATGGCATTGTATACAAATGTTTAATTAGGATATATATATATATATGGCATTTAGTAGTGATCTTTGCGAGTTAAAAAA]
[+] EMBL CB686046             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      CACCCTTGAGGTTTCTGCGACCGCATTTGAGGATTTAAATGAAGCACATTCTAGAAGGCCAGAACAAGGTAAGGTGGGTGAGTTGGGTCACGTCCCAGGATCGGAGGACCAGGGACGCGAAGCGTGAGTGGCAGGGCGCCGACGTCGAGGTCTCCAACAGTACGGTATTGCTCCAATGAGCAGTTGGGACCTTGGGAGCTGGGGTTATTGCCGCGAGGATGGTGCTTCTCTTTGTGTTGACTGTTGACAACGACTAGCCATCGGATTTGGATTCTGGAGGTAGTCTTTAGCATTTTCAAATTTTCCGATTGTACCTAAGTATCTCTATGTAATTGGGAGTGTGCCAACGTCATATACAGTTGAGCACTAAACCTAACTTTACACTTATATACTTTTTGTTCAATTGTTATATGGCATTGTATACAAATGTT                                                         ]


>consensus_11189#0 AAATTACATCTCCTACACCAATTTTTTTTCCTGTATGTTCTTCCGCATGTGCTAGCTAGC TTAGTAGCTTGAGCTCCATCGGTTTTGGTTGAGCTCCTGCTTCAGCTTGCCTCATGCCAG CATGCGCATGGTGCGGTCTGCTGCTCATGTGTTCTCTTCTTTCCAACATTTATCCTACTC GTTGCTCCTTAAGGTACGTACTGGGGCAGCGTGATGCCCGTGACTCAGCACTTAGGCAGT GAAGGGGATGGAGCGCAGGTGCAGTACGAGGCGACGCTGGCGTACTCGGGTGCAGTCGCG GGGGTGACGATCGAGGAACTAGCTGGCCGGACATCGTCATGGTCTTCGGTCTCCTACGTG CTCGACCTGGGGTTCGTCCACCCACACCACGCTGCCCATGCTTGCCTTCTATGGGAGCGG CGAGCGCCATGCCTACCTTGCCCCCTGCAGAACATCATCGCCACAGCCGCACGGCCACAC CTACCACCGCACACTCGTGGCCTCTATATATCGCTCACAGCTTCGCTGACAACATCGATC TGCATCTCATGTATGAGTGGATGTGTGCCATGCTGCCATAGCACCAAGGAGGTTTCTGCG ACCGCATTTGAGGATTTAAATGAAGCACATTCTAGAAGGCCAGAACAAGGTAAGGTGGGT GAGTTGGGTCACGTCCCAGGATCGGAGGACCAGGGACGCGAAGCGTGAGTGGCAGGGCGC CGACGTCGAGGTCTCCAACAGTACGGTATTGCTCCAATGAGCAGTTGGGACCTTGGGAGC TGGGGTTATTGCCGCGAGGATGGTGCTTCTCTTTGTGTTGACTGTTGACAACGACTAGCC ATCGGATTTGGATTCTGGAGGTAGTCTTTAGCATTTTCAAATTTTCCGATTGTACCTAAG TATCTCTATGTAATTGGGAGTGTGCCAACGTCATATACAGTTGAGCACTAAACCTAACTT TACACTTATATACTTTTTGTTCAATTGTTATATGGCATTGTATACAAATGTTTAATTAGG ATATATATATATATGGCATTTAGTAGTGAAAAAAACGAGTTAAAAAA



consensusID : consensus_11189#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 258
fasta sequence
                              [CGAGATGGCTCAAACNRATGGK-TACTTTGTCCGTTGCAGGTTGAGCTCCTRCTDCAGMTTGCCTCATGCCAGCATGCGCATGGTGCGGTCTGCTGCTCATGTGTTCTCTTCTTTCCAACATTTATCCTACTCGTTGCTCCTTAAGGTACGTACTGTGGCAGCGTGATGCCCGTGWCTCAGCACTKAGGCAGTGAAGGGKATGGMGCGCAGGTACAGTACGAGGCGACGCTGGCRTACTSGGGHACASTCGCGGGGKGC]

[+] EMBL AA754301             [CGAGATGGCTCAAACNRATGGK TACTTTGTCCGTTGCAGGTTGAGCTCCTRCTDCAGMTTGCCTCATGCCAGCATGCGCATGGTGCGGTCTGCTGCTCATGTGTTCTCTTCTTTCCAACATTTATCCTACTCGTTGCTCCTTAAGGTACGTACTGTGGCAGCGTGATGCCCGTGWCTCAGCACTKAGGCAGTGAAGGGKATGGMGCGCAGGTACAGTACGAGGCGACGCTGGCRTACTSGGGHACASTCGCGGGGKGC]
[+] EMBL AA754336             [CGAGATGGCTCAAACNRATGGKTTACTTTGTCCGTTGCAGGTTGAGCTCCTGCTDCAGMTTGCCTCATGCCAGCATGCGCATGGTGCGGTCTGCTGCTCATGTGTTCTCTTCTTTCCAACATTTATCCTACTCGTTGCTCCTTAAGGTACGTACTGTGGCAGCGTGATGCCCGTG                                                                                    ]


>consensus_11189#1 CGAGATGGCTCAAACNRATGGKTACTTTGTCCGTTGCAGGTTGAGCTCCTRCTDCAGMTT GCCTCATGCCAGCATGCGCATGGTGCGGTCTGCTGCTCATGTGTTCTCTTCTTTCCAACA TTTATCCTACTCGTTGCTCCTTAAGGTACGTACTGTGGCAGCGTGATGCCCGTGWCTCAG CACTKAGGCAGTGAAGGGKATGGMGCGCAGGTACAGTACGAGGCGACGCTGGCRTACTSG GGHACASTCGCGGGGKGC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_11189#0      AAATTACATCTCCTACACCAATTTTTTTTCCTGTATGTTCTTCCGCATGTGCTAGCTAGC 60
consensus_11189#1      ---------------------------------------------------CGAGATGGC 9
                                                                          * ** * **

consensus_11189#0      TTAGTAGCTTGAG--CTCCATCGGTTTT-GGTTGAGCTCCTGCTTCAGCTTGCCTCATGC 117
consensus_11189#1      TCAAACNRATGGKTACTTTGTCCGTTGCAGGTTGAGCTCCTRCTDCAGMTTGCCTCATGC 69
                       * *      **    **   ** ***   ************ ** *** ***********

consensus_11189#0      CAGCATGCGCATGGTGCGGTCTGCTGCTCATGTGTTCTCTTCTTTCCAACATTTATCCTA 177
consensus_11189#1      CAGCATGCGCATGGTGCGGTCTGCTGCTCATGTGTTCTCTTCTTTCCAACATTTATCCTA 129
                       ************************************************************

consensus_11189#0      CTCGTTGCTCCTTAAGGTACGTACTGGGGCAGCGTGATGCCCGTGACTCAGCACTTAGGC 237
consensus_11189#1      CTCGTTGCTCCTTAAGGTACGTACTGTGGCAGCGTGATGCCCGTGWCTCAGCACTKAGGC 189
                       ************************** ****************** ********* ****

consensus_11189#0      AGTGAAGGGGATGGAGCGCAGGTGCAGTACGAGGCGACGCTGGCGTACTCGGGTGCAGTC 297
consensus_11189#1      AGTGAAGGGKATGGMGCGCAGGTACAGTACGAGGCGACGCTGGCRTACTSGGGHACASTC 249
                       ********* **** ******** ******************** **** ***  ** **

consensus_11189#0      GCGGGGGTGACGATCGAGGAACTAGCTGGCCGGACATCGTCATGGTCTTCGGTCTCCTAC 357
consensus_11189#1      GCGGGGKGC--------------------------------------------------- 258
                       ******                                                      

consensus_11189#0      GTGCTCGACCTGGGGTTCGTCCACCCACACCACGCTGCCCATGCTTGCCTTCTATGGGAG 417
consensus_11189#1      ------------------------------------------------------------
                                                                                   

consensus_11189#0      CGGCGAGCGCCATGCCTACCTTGCCCCCTGCAGAACATCATCGCCACAGCCGCACGGCCA 477
consensus_11189#1      ------------------------------------------------------------
                                                                                   

consensus_11189#0      CACCTACCACCGCACACTCGTGGCCTCTATATATCGCTCACAGCTTCGCTGACAACATCG 537
consensus_11189#1      ------------------------------------------------------------
                                                                                   

consensus_11189#0      ATCTGCATCTCATGTATGAGTGGATGTGTGCCATGCTGCCATAGCACCAAGGAGGTTTCT 597
consensus_11189#1      ------------------------------------------------------------
                                                                                   

consensus_11189#0      GCGACCGCATTTGAGGATTTAAATGAAGCACATTCTAGAAGGCCAGAACAAGGTAAGGTG 657
consensus_11189#1      ------------------------------------------------------------
                                                                                   

consensus_11189#0      GGTGAGTTGGGTCACGTCCCAGGATCGGAGGACCAGGGACGCGAAGCGTGAGTGGCAGGG 717
consensus_11189#1      ------------------------------------------------------------
                                                                                   

consensus_11189#0      CGCCGACGTCGAGGTCTCCAACAGTACGGTATTGCTCCAATGAGCAGTTGGGACCTTGGG 777
consensus_11189#1      ------------------------------------------------------------
                                                                                   

consensus_11189#0      AGCTGGGGTTATTGCCGCGAGGATGGTGCTTCTCTTTGTGTTGACTGTTGACAACGACTA 837
consensus_11189#1      ------------------------------------------------------------
                                                                                   

consensus_11189#0      GCCATCGGATTTGGATTCTGGAGGTAGTCTTTAGCATTTTCAAATTTTCCGATTGTACCT 897
consensus_11189#1      ------------------------------------------------------------
                                                                                   

consensus_11189#0      AAGTATCTCTATGTAATTGGGAGTGTGCCAACGTCATATACAGTTGAGCACTAAACCTAA 957
consensus_11189#1      ------------------------------------------------------------
                                                                                   

consensus_11189#0      CTTTACACTTATATACTTTTTGTTCAATTGTTATATGGCATTGTATACAAATGTTTAATT 1017
consensus_11189#1      ------------------------------------------------------------
                                                                                   

consensus_11189#0      AGGATATATATATATATGGCATTTAGTAGTGAAAAAAACGAGTTAAAAAA 1067
consensus_11189#1      --------------------------------------------------
                                                                         




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)