These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11189#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1067 fasta sequence [AAATTACATCTCCTACACCAATTTTTTTTCCTGTATGTTCTTCCGCATGTGCTAGCTAGCTTAGTAGCTTGAGCTCCATCGGTTTTGGTTGAGCTCCTGCTTCAGCTTGCCTCATGCCAGCATGCGCATGGTGCGGTCTGCTGCTCATGTGTTCTCTTCTTTCCAACATTTATCCTACTCGTTGCTCCTTAAGGTACGTACTGGGGCAGCGTGATGCCCGTGACTCAGCACTTAGGCAGTGAAGGGGATGGAGCGCAGGTGCAGTACGAGGCGACGCTGGCGTACTCGGGTGCAGTCGCGGGGGTGACGATCGAGGAACTAGCTGGCCGGACATCGTCATGGTCTTCGGTCTCCTACGTGC-TCGACCTGGGGTTCGTCCACCCACACCACGCTGCCCATGCTTGCCTTCTATGGGAGCGGCGAGCGCCATGCCTACCTTGCCCCCTGCAGAACATCATCGCCACAGCCGCACGGCCACACCTACCACCGCACACTCGTGGCCTCTATATATCGCTCACAGCTTCGCTGACAACATCGATCTGCATCTCATGTATGAGTGGATGTGTGCCATGCTGCCATAGCACCAAGGAGGTTTCTGCGACCGCATTTGAGGATTTAAATGAAGCACATTCTAGAAGGCCAGAACAAGGTAAGGTGGGTGAGTTGGGTCACGTCCCAGGATCGGAGGACCAGGGACGCGAAGCGTGAGTGGCAGGGCGCCGACGTCGAGGTCTCCAACAGTACGGTATTGCTCCAATGAGCAGTTGGGACCTTGGGAGCTGGGGTTATTGCCGCGAGGATGGTGCTTCTCTTTGTGTTGACTGTTGACAACGACTAGCCATCGGATTTGGATTCTGGAGGTAGTCTTTAGCATTTTCAAATTTTCCGATTGTACCTAAGTATCTCTATGTAATTGGGAGTGTGCCAACGTCATATACAGTTGAGCACTAAACCTAACTTTACACTTATATACTTTTTGTTCAATTGTTATATGGCATTGTATACAAATGTTTAATTAGG--ATATATATATATATGGCATTTAGTAGTGAAAAAAACGAGTTAAAAAA] [+] EMBL AK103636 [AAATTACATCTCCTACACCAATTTTTTTTCCTGTATGTTCTTCCGCATGTGCTAGCTAGCTTAGTAGCTTGAGCTCCATCGGTTTTGGTTGAGCTCCTGCTTCAGCTTGCCTCATGCCAGCATGCGCATGGTGCGGTCTGCTGCTCATGTGTTCTCTTCTTTCCAACATTTATCCTACTCGTTGCTCCTTAAGGTACGTACTGGGGCAGCGTGATGCCCGTGACTCAGCACTTAGGCAGTGAAGGGGATGGAGCGCAGGTGCAGTACGAGGCGACGCTGGCGTACTCGGGTGCAGTCGCGGGGGTGACGATCGAGGAACTAGCTGGCCGGACATCGTCATGGTCTTCGGTCTCCTACGTGC TCGACCTGGGGTTCGTCCACCCACACCACGCTGCCCATGCTTGCCTTCTATGGGAGCGGCGAGCGCCATGCCTACCTTGCCCCCTGCAGAACATCATCGCCACAGCCGCACGGCCACACCTACCACCGCACACTCGTGGCCTCTATATATCGCTCACAGCTTCGCTGACAACATCGATCTGCATCTCATGTATGAGTGGATGTGTGCCATGCTGCCATAGCACCAAGGAGGTTTCTGCGACCGCATTTGAGGATTTAAATGAAGCACATTCTAGAAGGCCAGAACAAGGTAAGGTGGGTGAGTTGGGTCACGTCCCAGGATCGGAGGACCAGGGACGCGAAGCGCGAGTGGCAGGGCGCCGACGTCGAGGTCTCCAACAGTACGGTATTGCTCCAATGAGCAGTTGGGACCTTGGGAGCTGGGGTTATTGCCGCGAGGATGGTGCTTCTCTTTGTGTTGACTGTTGACAACGACTAGCCATCGGATTTGGATTCTGGAGGTAGTCTTTAGCATTTTCAAATTTTCCGATTGTACCTAAGTATCTCTATGTAATTGGGAGTGTGCCAACGTCATATACAGTTGAGCACTAAACCTAACTTTACACTTATATACTTTTTGTTCAATTGTTATATGGCATTGTATACAAATGTTTAATTAGG ATATATATATATATGGCA ] [+] EMBL CF327566 [AAATTACATCTCCTACACCAATTTTTTTTCCTGTATGTTCTTCCGCATGTGCTAGCTAGCTTAGTAGCTTGAGCTCCATCGGTTTTGGTTGAGCTCCTGCTTCAGCTTGCCTCATGCCAGCATGCGCATGGTGCGGTCTGCTGCTCATGTGTTCTCTTCTTTCCAACATTTATCCTACTCGTTGCTCCTTAAGGTACGTACTGGGGCAGCGTGATGCCCGTGACTCAGCACTTAGGCAGTGAAGGGGATGGAGCGCAGGTGCAGTACGAGGCGACGCTGGCGTACTCGGGTGCAGTCGCGGGGGTGACGATCGAGGAACTAGCTGGCCGGACATCGTCATGGTCTTCGGTCTCCTACGTGC TCGACCTGGGGTTCGTCCACCCACACCACGCTGCCCATGCTTGCCTTCTATGGGAGCGGCGAGCGCCATGCCTACCTTGCCCCCTGCAGAACATCATCGCCACAGCCGCACGGGCACACCTACCACCGCACACTCGTGGCCTCTATATATCGCTCACAGCTTCGCTGACAACATCGATCTGCATCTCATGTATGAGTGGATGTG ] [+] EMBL OSS4908A [ TCCTACACCAATTTTTTTTCCTGTATGTTCTTCCGCATGTGCTAGCTAGCTTAGTAGCTTGAGCTCCATCGGTTTTGGTTGAGCTCCTGCTTCAGCTTGCCTCATGCCAGCATGCGCATGGTGCGGTCTGCTGCTCATGTGTTCTCTTCTTTCCAACATTTATCCTACTCGTTGCTCCTTAAGGTACGTACTGGGGCAGCGTGATGCCCGTNACTCAGCACTTAGGCAGTGAAGGGGATGGAGCGCAGGTGCAGTACGAGGCGACGCTGGCGTACTCGGGTGCAGTCGCGGGGGTGACGATCGAGGAACTAGCTGGCCGGACATCGTCATGGTCTTCGGTCTCCTACGTGCTTCGACCTGGGGTTCGTCCACCCACAACACGNTGCCCATGCTTNCCTTCTATGGGAGCGGNGAGCGCAATGCCTACCTTTGCCCCTG ] [+] EMBL AU088727 [ ACTTGGGGTTCGTCCACCCACACCACGCTGCCCATGCTTGCCTTCTATGGGAGCGNCGAGCGCCATGCCTACCTTGCCCCNTGCAGAACATCATCGCCACAGCCGCACGGCCACACCTACCACCGCACACTCGTGGCCTCTATATATCGCTC CANNTTCGCTGACAACATCGATCTGCATCTCATGTATGAGTGGATGTGTGCCATGCTGCCATAGCACCAAGGAGGTTTCTGCGACCGCATTTGAGGATTTAAATGAAGCACATTCTAGAAGGCCAGAACAAGGTAAGGTGGGTGAGTTGGGTCACGTCCCAGGATCGGAGGACCAGGGACGCGAAGCGTGAGTGGCAGGGCGCCGACGTCGAGGTCTCCAACAGTACGGTATTGCTCCAATGAGCAGTTGGGACCTTGGGAGCTGGGGTTATTGCCGCGAGGATGGTGCTTCTCTTTGTGTTGACTGTTGACAACGACTAGCCATCGGATTTGGATTCTGGAGGTAGTCTTTAGCATTTTCAAATTTTCCGATTGTACCTAAGTATCTCTATGTAATTGGGAGTGTGCCAACGTCATATACAGTTGAGCACTAAACCTAACTTTACACTTATATACTTTTTGTTCAATTGTTATATGGCATTGTATACAAATGTTTAATTAGG ATATATATATATATGGCATTTAGTAGTGAAAAAAA ] [-] EMBL CF327567 [ TGGATGTGTGCCATGCTGCCATAGCACCAAGGAGGTTTCTGCGACCGCATTTGAGGATTTAAATGAAGCACATTCTAGAAGGCCAGAACAAGGTAAGGTGGGTGAGTTGGGTCACGTCCCAGGATCGGAGGACCAGGGACGCGAAGCGTGAGTGGCAGGGCGCCGACGTCGAGGTCTCCAACAGTACGGTATTGCTCCAATGAGCAGTTGGGACCTTGGGAGCTGGGGTTATTGCCGCGAGGATGGTGCTTCTCTTTGTGTTGACTGTTGACAACGACTAGCCATCGGATTTGGATTCTGGAGGTAGTCTTTAGCATTTTCAAATTTTCCGATTGTACCTAAGTATCTCTATGTAATCGGGAGTGTGCCAACGTCATATACAGTTGAGCACTAAACCTAACTTTACACTTATATACTTTTTGTTCAATTGTTATATGGCATTGTATACAAATGTTTAATTAGGATATATATATATATATGGCATTTAGTAGTGATCTTTGCGAGTTAAAAAA] [+] EMBL CB686046 [ CACCCTTGAGGTTTCTGCGACCGCATTTGAGGATTTAAATGAAGCACATTCTAGAAGGCCAGAACAAGGTAAGGTGGGTGAGTTGGGTCACGTCCCAGGATCGGAGGACCAGGGACGCGAAGCGTGAGTGGCAGGGCGCCGACGTCGAGGTCTCCAACAGTACGGTATTGCTCCAATGAGCAGTTGGGACCTTGGGAGCTGGGGTTATTGCCGCGAGGATGGTGCTTCTCTTTGTGTTGACTGTTGACAACGACTAGCCATCGGATTTGGATTCTGGAGGTAGTCTTTAGCATTTTCAAATTTTCCGATTGTACCTAAGTATCTCTATGTAATTGGGAGTGTGCCAACGTCATATACAGTTGAGCACTAAACCTAACTTTACACTTATATACTTTTTGTTCAATTGTTATATGGCATTGTATACAAATGTT ] consensusID : consensus_11189#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 258 fasta sequence [CGAGATGGCTCAAACNRATGGK-TACTTTGTCCGTTGCAGGTTGAGCTCCTRCTDCAGMTTGCCTCATGCCAGCATGCGCATGGTGCGGTCTGCTGCTCATGTGTTCTCTTCTTTCCAACATTTATCCTACTCGTTGCTCCTTAAGGTACGTACTGTGGCAGCGTGATGCCCGTGWCTCAGCACTKAGGCAGTGAAGGGKATGGMGCGCAGGTACAGTACGAGGCGACGCTGGCRTACTSGGGHACASTCGCGGGGKGC] [+] EMBL AA754301 [CGAGATGGCTCAAACNRATGGK TACTTTGTCCGTTGCAGGTTGAGCTCCTRCTDCAGMTTGCCTCATGCCAGCATGCGCATGGTGCGGTCTGCTGCTCATGTGTTCTCTTCTTTCCAACATTTATCCTACTCGTTGCTCCTTAAGGTACGTACTGTGGCAGCGTGATGCCCGTGWCTCAGCACTKAGGCAGTGAAGGGKATGGMGCGCAGGTACAGTACGAGGCGACGCTGGCRTACTSGGGHACASTCGCGGGGKGC] [+] EMBL AA754336 [CGAGATGGCTCAAACNRATGGKTTACTTTGTCCGTTGCAGGTTGAGCTCCTGCTDCAGMTTGCCTCATGCCAGCATGCGCATGGTGCGGTCTGCTGCTCATGTGTTCTCTTCTTTCCAACATTTATCCTACTCGTTGCTCCTTAAGGTACGTACTGTGGCAGCGTGATGCCCGTG ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_11189#0 AAATTACATCTCCTACACCAATTTTTTTTCCTGTATGTTCTTCCGCATGTGCTAGCTAGC 60 consensus_11189#1 ---------------------------------------------------CGAGATGGC 9 * ** * ** consensus_11189#0 TTAGTAGCTTGAG--CTCCATCGGTTTT-GGTTGAGCTCCTGCTTCAGCTTGCCTCATGC 117 consensus_11189#1 TCAAACNRATGGKTACTTTGTCCGTTGCAGGTTGAGCTCCTRCTDCAGMTTGCCTCATGC 69 * * ** ** ** *** ************ ** *** *********** consensus_11189#0 CAGCATGCGCATGGTGCGGTCTGCTGCTCATGTGTTCTCTTCTTTCCAACATTTATCCTA 177 consensus_11189#1 CAGCATGCGCATGGTGCGGTCTGCTGCTCATGTGTTCTCTTCTTTCCAACATTTATCCTA 129 ************************************************************ consensus_11189#0 CTCGTTGCTCCTTAAGGTACGTACTGGGGCAGCGTGATGCCCGTGACTCAGCACTTAGGC 237 consensus_11189#1 CTCGTTGCTCCTTAAGGTACGTACTGTGGCAGCGTGATGCCCGTGWCTCAGCACTKAGGC 189 ************************** ****************** ********* **** consensus_11189#0 AGTGAAGGGGATGGAGCGCAGGTGCAGTACGAGGCGACGCTGGCGTACTCGGGTGCAGTC 297 consensus_11189#1 AGTGAAGGGKATGGMGCGCAGGTACAGTACGAGGCGACGCTGGCRTACTSGGGHACASTC 249 ********* **** ******** ******************** **** *** ** ** consensus_11189#0 GCGGGGGTGACGATCGAGGAACTAGCTGGCCGGACATCGTCATGGTCTTCGGTCTCCTAC 357 consensus_11189#1 GCGGGGKGC--------------------------------------------------- 258 ****** consensus_11189#0 GTGCTCGACCTGGGGTTCGTCCACCCACACCACGCTGCCCATGCTTGCCTTCTATGGGAG 417 consensus_11189#1 ------------------------------------------------------------ consensus_11189#0 CGGCGAGCGCCATGCCTACCTTGCCCCCTGCAGAACATCATCGCCACAGCCGCACGGCCA 477 consensus_11189#1 ------------------------------------------------------------ consensus_11189#0 CACCTACCACCGCACACTCGTGGCCTCTATATATCGCTCACAGCTTCGCTGACAACATCG 537 consensus_11189#1 ------------------------------------------------------------ consensus_11189#0 ATCTGCATCTCATGTATGAGTGGATGTGTGCCATGCTGCCATAGCACCAAGGAGGTTTCT 597 consensus_11189#1 ------------------------------------------------------------ consensus_11189#0 GCGACCGCATTTGAGGATTTAAATGAAGCACATTCTAGAAGGCCAGAACAAGGTAAGGTG 657 consensus_11189#1 ------------------------------------------------------------ consensus_11189#0 GGTGAGTTGGGTCACGTCCCAGGATCGGAGGACCAGGGACGCGAAGCGTGAGTGGCAGGG 717 consensus_11189#1 ------------------------------------------------------------ consensus_11189#0 CGCCGACGTCGAGGTCTCCAACAGTACGGTATTGCTCCAATGAGCAGTTGGGACCTTGGG 777 consensus_11189#1 ------------------------------------------------------------ consensus_11189#0 AGCTGGGGTTATTGCCGCGAGGATGGTGCTTCTCTTTGTGTTGACTGTTGACAACGACTA 837 consensus_11189#1 ------------------------------------------------------------ consensus_11189#0 GCCATCGGATTTGGATTCTGGAGGTAGTCTTTAGCATTTTCAAATTTTCCGATTGTACCT 897 consensus_11189#1 ------------------------------------------------------------ consensus_11189#0 AAGTATCTCTATGTAATTGGGAGTGTGCCAACGTCATATACAGTTGAGCACTAAACCTAA 957 consensus_11189#1 ------------------------------------------------------------ consensus_11189#0 CTTTACACTTATATACTTTTTGTTCAATTGTTATATGGCATTGTATACAAATGTTTAATT 1017 consensus_11189#1 ------------------------------------------------------------ consensus_11189#0 AGGATATATATATATATGGCATTTAGTAGTGAAAAAAACGAGTTAAAAAA 1067 consensus_11189#1 -------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||