These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11190#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1072 fasta sequence [CGCCGCCGCCGCCGCCGCCGCCATGAGAGGTCGGAGCAGCCGCGGCCATGCCGCCGCGTCGACGTCGAGCCGGCGTGAGGCCGAGGACGAGGATCCAGCCACCGCCTCCGACGAATCGGGCGACGACGAGGAGGTTTCCTCGTCGTCGGGGTCGGAGTCGGAGAGCGACAGTGACGCCGAGCGGGAGCTGGAGCGCGCGCTCGCCGACGTGCCGTTCGGGGAGCTGCAGCGCGCCCGCGCCGACGGGTCGCTCGGCGGCCGCGGGTTTAGTGCCGCCGCCGCCGCGCAGAAGAAGGCTCGCAGGGCGAGCAAGAAAAGGCCGATGGAGATCAGCACCAAAGTGCGGCCACCGAGGTTCAGGGAGATCATTCAGGTTCCGAAGAAGGTTGTCAGGGACCCAAGATTTGAACCTGTATATGGACCTGTTGACAAAGAAGGGTTCAGGAAAAGATACAATTTCTTATTTGATGATGAACTTCCTGCAGAGAAAGAGAAACTACAAAAATCGATTAAGAAATCAAAGGACCCTAATGCCATTGAAGAAATGAAGAGTCGCATCACTTGGATTGATAAACAATTGAGGTCTCATCCTAAGAAGAACGTTGAGTCAGAGATTCTGCGTGAACATATTAAGAAAGAGAGGGAAGCAACAAAGACTGGAAAGCGACCATATTATCTGAAGAAATCTGAAATTCGTGAAAGGAAGTTGATGAACAAGTACAATGAGCTCAAGGAGGCAGGAAAGCTTGATGCCTTCATGGAGAAGCGGCGGAGGAAGAACGCCTCCAAAGATCATCGCTACATGCCATATCGAAGGAATGGAGATGGTGCATAATGATGTCTCTCAAGCTGCCTTTAGCTTGATTCTTTCATGATCCACTGGTCCAGCGTCCTGTACAACCTAGAGCGAAAGCTATCCATGGACGTTTGATTTGTAGCTGAAATTTGATTACTGATAACCACAAGCTGTTGTAAACTTAAATCATGGATAAAATATTGTTTTGTTTGCTGCTTTAATTTATCATTTTCTGGAATCAAAGTGAAAACCAGATCAAAAAAAAAAAAAAAAAAA] [+] EMBL AK072623 [CGCCGCCGCCGCCGCCGCCGCCATGAGAGGTCGGAGCAGCCGCGGCCATGCCGCCGCGTCGACGTCGAGCCGGCGTGAGGCCGAGGACGAGGATCCAGCCACCGCCTCCGACGAATCGGGCGACGACGAGGAGGTTTCCTCGTCGTCGGGGTCGGAGTCGGAGAGCGACAGTGACGCCGAGCGGGAGCTGGAGCGCGCGCTCGCCGACGTGCCGTTCGGGGAGCTGCAGCGCGCCCGCGCCGACGGGTCGCTCGGCGGCCGCGGGTTTAGTGCCGCCGCCGCCGCGCAGAAGAAGGCTCGCAGGGCGAGCAAGAAAAGGCCGATGGAGATCAGCACCAAAGTGCGGCCACCGAGGTTCAGGGAGATCATTCAGGTTCCGAAGAAGGTTGTCAGGGACCCAAGATTTGAACCTGTATATGGACCTGTTGACAAAGAAGGGTTCAGGAAAAGATACAATTTCTTATTTGATGATGAACTTCCTGCAGAGAAAGAGAAACTACAAAAATCGATTAAGAAATCAAAGGACCCTAATGCCATTGAAGAAATGAAGAGTCGCATCACTTGGATTGATAAACAATTGAGGTCTCATCCTAAGAAGAACGTTGAGTCAGAGATTCTGCGTGAACATATTAAGAAAGAGAGGGAAGCAACAAAGACTGGAAAGCGACCATATTATCTGAAGAAATCTGAAATTCGTGAAAGGAAGTTGATGAACAAGTACAATGAGCTCAAGGAGGCAGGAAAGCTTGATGCCTTCATGGAGAAGCGGCGGAGGAAGAACGCCTCCAAAGATCATCGCTACATGCCATATCGAAGGAATGGAGATGGTGCATAATGATGTCTCTCAAGCTGCCTTTAGCTTGATTCTTTCATGATCCACTGGTCCAGCGTCCTGTACAACCTAGAGCGAAAGCTATCCATGGACGTTTGATTTGTAGCTGAAATTTGATTACTGATAACCACAAGCTGTTGTAAACTTAAATCATGGATAAAATATTGTTTTGTTTGCTGCTTTAATTTATCATTTTCTGGAATCAAAGTGAAAACCAGATCA ] [+] EMBL CB685037 [ CCGCCTCCGCCATGAGAGGTCGGAGCAGCCGCGGCCATGCCGCCGCGTCGACGTCGAGCCGGCGTGAGGCCGAGGACGAGGATCCAGCCACCGCCTCCGACGAATCGGGCGACGACGAGGAGGTTTCCTCGTCGTCGGGGTCGGAGTCGGAGAGCGACAGTGACGCCGAGCGGGAGCTGGAGCGCGCGCTCGCCGACGTGCCGTTCGGGGAGCTGCAGCGCGCCCGCGCCGACGGGTCGCTCGGCGGCCGCGGGTTTAGTGCCGCCGCCGCCGCGCAGAAGAAGGCTCGCAGGGCGAGCAAGAAAAGGCCGATGGAGATCAGCACCAGAGTGCGGCCACCGAGGTTCAGGGAGATCATTCAGGTTCCGAAGAAGGTTGTCAGGGACCCAAGATTTGAACCTGTATATGGACCTGTTGACAAAGAAGGGTTCAGGAAAAGATACAATTTCTTATTTGATGATGAACTTCCTGCAGAGACAGAGAAACTACTAGAATCGATTAAGAAATCAGAGGACCCTAATGCCATTGAA ] [+] EMBL OS0442A [ TGCGTGAACATATTAAGAAAGAGAGGGAAGCAACAAAGACTGGAAAGCGACCATATTATCTGAAGAAATCTGAAATTCGTGAAAGGAAGTTGATGAACAAGTACAATGAGCTCAAGGAGGCAGGAAAGCTTGATGCCTTCATGGAGAAGCGGCGGAGGAAGAACGCCTCCAAAGATCATCGCTACATGCCATATCGAAGGAATGGAGATGGTGCATAATGATGTCTCTCAAGCTGCCTTTAGCTTGATTCTTTCATGATCCACTGGTCCAGCGTCCTGTACAACCTAGAGCGAAAGCTATCCATGGACGTTTGATTTGTAGCTGAAAT ] [+] EMBL C98042 [ tnCGTGAACATTTTAAGAAAGAGAGGGAAGCAACAAAGACTGGAAAGCGNCCATNTTATCTGAAGAAATCTGAAATTCGTGAAAGGAAGTTGATGAACAAGTACAATGNGCTCAAGGAGGCAGGAAAGCTTGATNCCTTCATGGAGAANCGGCGGAGGAAGAACNCCTCCAAAGATCATCGCTACATGCCATATCGAAGGAATGGAGATGGTGCATAATGATGTCTCTCAAGCTGCCTTTAGCTTGATTCTTTCATGATCCACTGGTCCAGCGTCCTGTACAACCTAGAGCGAAAGCTATCCATGGACGTTTGATTTGTAGCTGAAATTTGATTACTGATAACCACAAGCTGTTGTAAACTTAAATCATGGATAAAATATTGTTTTGTTTGCTGCTTTAATTTATCATTTTCTGGAATCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL CB683534 [ TGAACATGTACAATGAGCTCAAGGAGGCAGGAAAGCTTGATGCCTTCATGGAGAAGCGGCGGAGGAAGAACGCCTCCAAAGATCATCGCTACATGCCATATCGAAGGAATGGAGATGGTGCATAATGATGTCTCTCAAGCTGCCTTTAGCTTGATTCTTTCATGATCCACTGGTCCAGCGTCCTGTACAACCTACAGCGAAAGCTATCCATGGACGTTTGATTTGTAGCTGAAATTTGATTACTGATAACCACAAGCTGTTGTAAACTTAAATCATGGATAAAATATTGTTTTGTTTGCTGCTTTAATTTATCATTTT ] [+] EMBL CF327209 [ TAATGATGTCTCTCAAGCTGCCTTTAGCTTGATTCTTTCATGATCCACTGGTCCAGCGTCCTGTACAACCTAGAGCGAAAGCTATCCATGGACGTTTGATTTGTAGCTGAAATTTGATTACTGATAACCACAAGCTGTTGTAAACTTAAATCATGGATAAAATATTGTTTTGTTTGCTGCTTTAAaaa ] [-] EMBL CF327210 [ AATGATGTCTCTCAAGCTGCCTTTAGCTTGATTCTTTCATGATCCACTGGTCCAGCGTCCTGTACAACCTAGAGCGAAAGCTATCCATGGACGTTTGATTTGTAGCTGAAATTTGATTACTGATAACCACAAGCTGTTGTAAACTTAAATCATGGATAAAATATTGTTTTGTTTGCTGCTTTAAaaaa ] consensusID : consensus_11190#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 694 fasta sequence [AGAAATGAAGAGTCGCATCACTTGGATTGTAAGTTTGTTTCTACTTTCTGACATTTTGGAGTTATATCAATGAAGAGTAAAGAGCTTTGGTGTTTTCCAATTGATGTTATATTTGTGGCACCTGCTCAGTGAAACTTTCATATACGAAGAAAAAGTCATCAGACTTTAGACCCCATTTTCTTGAGTTCTTTTTGTACTGGATTTCTGATAGAATATAAGACGTTGCACCTCAGCCTTGTAAAGCCTGTTAAGGAGGCATTGCCTGTTGTGCTGCATGATTAGATCTGTTTATATTTTATAACTGCTTTGTAGAAGATCATAAAAATTATAATGTAGTTATCATCAACATCATCTATTGTTGCTTCAAGAATTCAAGAAGGATAAGACAGTGGCAAGCTTCATTTTTTGAAGTTGCTAGTTGCCACGATAGGATAATCACCTTAGCATGAAACTAAAGTAAGAAAACTAGTTGGCCCCATCCAGCAAGCAATTGGCCAGTACAATTTGATAATCTTACTATTACAGTGAGAGTAAGAAATATGCATGATGTATCATAGGCTTGCATGAGCAATCTTATCAGGTTGCTCAATCTTTTTGTATATTTAGTTGATGCCTTGATGACACATACATCTGCAGGATAAACAATTGAGGTCTCATCCTAAGAAGAACGTTGAGTCAGAGATTCTGCGTGAAC] [+] EMBL CB000574 [AGAAATGAAGAGTCGCATCACTTGGATTGTAAGTTTGTTTCTACTTTCTGACATTTTGGAGTTATATCAATGAAGAGTAAAGAGCTTTGGTGTTTTCCAATTGATGTTATATTTGTGGCACCTGCTCAGTGAAACTTTCATATACGAAGAAAAAGTCATCAGACTTTAGACCCCATTTTCTTGAGTTCTTTTTGTACTGGATTTCTGATAGAATATAAGACGTTGCACCTCAGCCTTGTAAAGCCTGTTAAGGAGGCATTGCCTGTTGTGCTGCATGATTAGATCTGTTTATATTTTATAACTGCTTTGTAGAAGATCATAAAAATTATAATGTAGTTATCATCAACATCATCTATTGTTGCTTCAAGAATTCAAGAAGGATAAGACAGTGGCAAGCTTCATTTTTTGAAGTTGCTAGTTGCCACGATAGGATAATCACCTTAGCATGAAACTAAAGTAAGAAAACTAGTTGGCCCCATCCAGCAAGCAATTGGCCAGTACAATTTGATAATCTTACTATTACAGTGAGAGTAAGAAATATGCATGATGTATCATAGGCTTGCATGAGCAATCTTATCAGGTTGCTCAATCTTTTTGTATATTTAGTTGATGCCTTGATGACACATACATCTGCAGGATAAACAATTGAGGTCTCATCCTAAGAAGAACGTTGAGTCAGAGATTCTGCGTGAAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_11190#0 CGCCGCCGCCGCCGCCGCCGCCATGAGAGGTCGGAGCAGCCGCGGCCATGCCGCCGCGTC 60 consensus_11190#1 ------------------------------------------------------------ consensus_11190#0 GACGTCGAGCCGGCGTGAGGCCGAGGACGAGGATCCAGCCACCGCCTCCGACGAATCGGG 120 consensus_11190#1 ------------------------------------------------------------ consensus_11190#0 CGACGACGAGGAGGTTTCCTCGTCGTCGGGGTCGGAGTCGGAGAGCGACAGTGACGCCGA 180 consensus_11190#1 ------------------------------------------------------------ consensus_11190#0 GCGGGAGCTGGAGCGCGCGCTCGCCGACGTGCCGTTCGGGGAGCTGCAGCGCGCCCGCGC 240 consensus_11190#1 --------------------------------------------------AGAAATGAAG 10 * consensus_11190#0 CGACGGGTCGCTCGGCGGCCGCGGGTTTAGTGCCGCCGCC-GCCGCGCAGAAGAAGGCTC 299 consensus_11190#1 AGTCGCATCACTTGG--ATTGTAAGTTTGTTTCTACTTTCTGACATTTTGGAGTTATATC 68 * ** ** ** ** * **** * * * * * * * ** ** consensus_11190#0 GCAGGGCGAGCAAGAAAA---GGCCGATGGAGATCAGCACCAAAGTGCGGCCACCGAGGT 356 consensus_11190#1 A-ATGAAGAGTAAAGAGCTTTGGTGTTTTCCAATTGATGTTATATTTGTGGCACC--TGC 125 * * *** ** * ** * ** * * * * **** * consensus_11190#0 TCAGGGAGATCATTCAGGTTCCGA-AGAAGGTTGTCAGGGACCCAAGATTTGAACCTGTA 415 consensus_11190#1 TCAGTGAAA-CTTTCATATACGAAGAAAAAGTCATCAG--ACTTTAGACCCCA--TTTTC 180 **** ** * * **** * * * * ** ** **** ** *** * * * consensus_11190#0 TATGGACCTGTTGACAAAGAAGGGTTCAGGAAAAGATACAATTTCTTATTTGATGATGAA 475 consensus_11190#1 TTGAGTTCTTTTTGTAC---TGGATTTCTGATAGAATATAA----------GACGTTGCA 227 * * ** ** * ** ** ** * *** ** ** * ** * consensus_11190#0 CTTCCTGCAGAGAAAGAGAAACTACAAAAATCGATTAAGAAATCAAAGGACCCTAATGCC 535 consensus_11190#1 CCTC--------------AGCCTTGTAAAGCCTGTTAAGGAGGCATTG---CCTGTTGT- 269 * ** * ** *** * ***** * ** * *** ** consensus_11190#0 ATTGAAGAAATGAAGAGTCGCATCACTTGGATTGATAAACAATTGAGGTCTCATCCTAAG 595 consensus_11190#1 GCTGCATGATT--AGATCTGTTTATATTTTATAACTGCTTTGTAGAAGA-TCATAAAAAT 326 ** * * * *** * * ** ** * * ** * **** ** consensus_11190#0 AAGAACGTTGA-GTCAGAGATTCTGCGTGAACATATTAAGAAAGAGAGGGAAGCAACAAA 654 consensus_11190#1 TATAATGTAGTTATCATCAACATCATCTATTGTTGCTTCAAGAATTCAAGAAGGATAAGA 386 * ** ** * *** * * * * * * **** * * * consensus_11190#0 GACTGGAAAGCGACCATATTATCTGAAGAAATCTGAAATTCGTGAAAGGAAGTTGATGAA 714 consensus_11190#1 CAGTGGCAAGC---TTCATTTTTTGAAG----TTGCTAGTTGCCACGATAGGATAATCAC 439 * *** **** *** * ***** ** * * * * * * * ** * consensus_11190#0 CAAGTACAATGAGCTCAAGGAGGCAGGAAAGCTTGATGCCTTCATGGAG-AAGCGGCGGA 773 consensus_11190#1 C--TTAGCATGAAACTAAAG---TAAGAAAACTAGTTGGCCCCATCCAGCAAGCAATTGG 494 * ** **** ** * * **** ** * ** * *** ** **** * consensus_11190#0 GGAAGAACGCCTCCAAAGATCATCGCTACATGCCATATCGAAGGAATGGAGATGGTGCAT 833 consensus_11190#1 CCAGTACAATTTGATAATCTTACTATTACA-GTGAGAGT-AAGAAATATGCATGATGTAT 552 * * * ** * * **** * * * *** *** *** ** ** consensus_11190#0 AATGATGTCTCTCAAGCTGCCTTTAGCTTGATTCTTTCATGATCCACTGGTCCAGCGTCC 893 consensus_11190#1 CATAGGCTTGCATGAGCAATCTTA---TCAGGTTGCTCA--ATCTTTTTGTATATTTAGT 607 ** * * *** *** * * *** *** * ** * consensus_11190#0 TGTACAACCTAGAGCGAAAGCTATCCATGGACGTTTGATTTGTAGCTGAAATTTGATTAC 953 consensus_11190#1 TG-ATGCCTTGATGACACATACATCTGCAG------GATAAACAATTGAGGTCTCATC-C 659 ** * * * * * * *** * *** * *** * * ** * consensus_11190#0 TGATAACCACAAGCTGTTGTAAACTTAAATCATGGATAAAATATTGTTTTGTTTGCTGCT 1013 consensus_11190#1 TAAGAAGAACGTTGAGTCAGAGATTCTG--CGTGAAC----------------------- 694 * * ** ** ** * * * * ** * consensus_11190#0 TTAATTTATCATTTTCTGGAATCAAAGTGAAAACCAGATCAAAAAAAAAAAAAAAAAAA 1072 consensus_11190#1 ----------------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||