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Oryza sativa
cluster # 11190 cluster # 11190       Sequences # 8       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_11190#0 length = 1072 sequences # 7  
consensus_11190#1 length = 694 sequences # 1  

consensusID : consensus_11190#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 7
consensus length = 1072
fasta sequence
                              [CGCCGCCGCCGCCGCCGCCGCCATGAGAGGTCGGAGCAGCCGCGGCCATGCCGCCGCGTCGACGTCGAGCCGGCGTGAGGCCGAGGACGAGGATCCAGCCACCGCCTCCGACGAATCGGGCGACGACGAGGAGGTTTCCTCGTCGTCGGGGTCGGAGTCGGAGAGCGACAGTGACGCCGAGCGGGAGCTGGAGCGCGCGCTCGCCGACGTGCCGTTCGGGGAGCTGCAGCGCGCCCGCGCCGACGGGTCGCTCGGCGGCCGCGGGTTTAGTGCCGCCGCCGCCGCGCAGAAGAAGGCTCGCAGGGCGAGCAAGAAAAGGCCGATGGAGATCAGCACCAAAGTGCGGCCACCGAGGTTCAGGGAGATCATTCAGGTTCCGAAGAAGGTTGTCAGGGACCCAAGATTTGAACCTGTATATGGACCTGTTGACAAAGAAGGGTTCAGGAAAAGATACAATTTCTTATTTGATGATGAACTTCCTGCAGAGAAAGAGAAACTACAAAAATCGATTAAGAAATCAAAGGACCCTAATGCCATTGAAGAAATGAAGAGTCGCATCACTTGGATTGATAAACAATTGAGGTCTCATCCTAAGAAGAACGTTGAGTCAGAGATTCTGCGTGAACATATTAAGAAAGAGAGGGAAGCAACAAAGACTGGAAAGCGACCATATTATCTGAAGAAATCTGAAATTCGTGAAAGGAAGTTGATGAACAAGTACAATGAGCTCAAGGAGGCAGGAAAGCTTGATGCCTTCATGGAGAAGCGGCGGAGGAAGAACGCCTCCAAAGATCATCGCTACATGCCATATCGAAGGAATGGAGATGGTGCATAATGATGTCTCTCAAGCTGCCTTTAGCTTGATTCTTTCATGATCCACTGGTCCAGCGTCCTGTACAACCTAGAGCGAAAGCTATCCATGGACGTTTGATTTGTAGCTGAAATTTGATTACTGATAACCACAAGCTGTTGTAAACTTAAATCATGGATAAAATATTGTTTTGTTTGCTGCTTTAATTTATCATTTTCTGGAATCAAAGTGAAAACCAGATCAAAAAAAAAAAAAAAAAAA]

[+] EMBL AK072623             [CGCCGCCGCCGCCGCCGCCGCCATGAGAGGTCGGAGCAGCCGCGGCCATGCCGCCGCGTCGACGTCGAGCCGGCGTGAGGCCGAGGACGAGGATCCAGCCACCGCCTCCGACGAATCGGGCGACGACGAGGAGGTTTCCTCGTCGTCGGGGTCGGAGTCGGAGAGCGACAGTGACGCCGAGCGGGAGCTGGAGCGCGCGCTCGCCGACGTGCCGTTCGGGGAGCTGCAGCGCGCCCGCGCCGACGGGTCGCTCGGCGGCCGCGGGTTTAGTGCCGCCGCCGCCGCGCAGAAGAAGGCTCGCAGGGCGAGCAAGAAAAGGCCGATGGAGATCAGCACCAAAGTGCGGCCACCGAGGTTCAGGGAGATCATTCAGGTTCCGAAGAAGGTTGTCAGGGACCCAAGATTTGAACCTGTATATGGACCTGTTGACAAAGAAGGGTTCAGGAAAAGATACAATTTCTTATTTGATGATGAACTTCCTGCAGAGAAAGAGAAACTACAAAAATCGATTAAGAAATCAAAGGACCCTAATGCCATTGAAGAAATGAAGAGTCGCATCACTTGGATTGATAAACAATTGAGGTCTCATCCTAAGAAGAACGTTGAGTCAGAGATTCTGCGTGAACATATTAAGAAAGAGAGGGAAGCAACAAAGACTGGAAAGCGACCATATTATCTGAAGAAATCTGAAATTCGTGAAAGGAAGTTGATGAACAAGTACAATGAGCTCAAGGAGGCAGGAAAGCTTGATGCCTTCATGGAGAAGCGGCGGAGGAAGAACGCCTCCAAAGATCATCGCTACATGCCATATCGAAGGAATGGAGATGGTGCATAATGATGTCTCTCAAGCTGCCTTTAGCTTGATTCTTTCATGATCCACTGGTCCAGCGTCCTGTACAACCTAGAGCGAAAGCTATCCATGGACGTTTGATTTGTAGCTGAAATTTGATTACTGATAACCACAAGCTGTTGTAAACTTAAATCATGGATAAAATATTGTTTTGTTTGCTGCTTTAATTTATCATTTTCTGGAATCAAAGTGAAAACCAGATCA                  ]
[+] EMBL CB685037             [           CCGCCTCCGCCATGAGAGGTCGGAGCAGCCGCGGCCATGCCGCCGCGTCGACGTCGAGCCGGCGTGAGGCCGAGGACGAGGATCCAGCCACCGCCTCCGACGAATCGGGCGACGACGAGGAGGTTTCCTCGTCGTCGGGGTCGGAGTCGGAGAGCGACAGTGACGCCGAGCGGGAGCTGGAGCGCGCGCTCGCCGACGTGCCGTTCGGGGAGCTGCAGCGCGCCCGCGCCGACGGGTCGCTCGGCGGCCGCGGGTTTAGTGCCGCCGCCGCCGCGCAGAAGAAGGCTCGCAGGGCGAGCAAGAAAAGGCCGATGGAGATCAGCACCAGAGTGCGGCCACCGAGGTTCAGGGAGATCATTCAGGTTCCGAAGAAGGTTGTCAGGGACCCAAGATTTGAACCTGTATATGGACCTGTTGACAAAGAAGGGTTCAGGAAAAGATACAATTTCTTATTTGATGATGAACTTCCTGCAGAGACAGAGAAACTACTAGAATCGATTAAGAAATCAGAGGACCCTAATGCCATTGAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL OS0442A              [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         TGCGTGAACATATTAAGAAAGAGAGGGAAGCAACAAAGACTGGAAAGCGACCATATTATCTGAAGAAATCTGAAATTCGTGAAAGGAAGTTGATGAACAAGTACAATGAGCTCAAGGAGGCAGGAAAGCTTGATGCCTTCATGGAGAAGCGGCGGAGGAAGAACGCCTCCAAAGATCATCGCTACATGCCATATCGAAGGAATGGAGATGGTGCATAATGATGTCTCTCAAGCTGCCTTTAGCTTGATTCTTTCATGATCCACTGGTCCAGCGTCCTGTACAACCTAGAGCGAAAGCTATCCATGGACGTTTGATTTGTAGCTGAAAT                                                                                                                               ]
[+] EMBL C98042               [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         tnCGTGAACATTTTAAGAAAGAGAGGGAAGCAACAAAGACTGGAAAGCGNCCATNTTATCTGAAGAAATCTGAAATTCGTGAAAGGAAGTTGATGAACAAGTACAATGNGCTCAAGGAGGCAGGAAAGCTTGATNCCTTCATGGAGAANCGGCGGAGGAAGAACNCCTCCAAAGATCATCGCTACATGCCATATCGAAGGAATGGAGATGGTGCATAATGATGTCTCTCAAGCTGCCTTTAGCTTGATTCTTTCATGATCCACTGGTCCAGCGTCCTGTACAACCTAGAGCGAAAGCTATCCATGGACGTTTGATTTGTAGCTGAAATTTGATTACTGATAACCACAAGCTGTTGTAAACTTAAATCATGGATAAAATATTGTTTTGTTTGCTGCTTTAATTTATCATTTTCTGGAATCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL CB683534             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      TGAACATGTACAATGAGCTCAAGGAGGCAGGAAAGCTTGATGCCTTCATGGAGAAGCGGCGGAGGAAGAACGCCTCCAAAGATCATCGCTACATGCCATATCGAAGGAATGGAGATGGTGCATAATGATGTCTCTCAAGCTGCCTTTAGCTTGATTCTTTCATGATCCACTGGTCCAGCGTCCTGTACAACCTACAGCGAAAGCTATCCATGGACGTTTGATTTGTAGCTGAAATTTGATTACTGATAACCACAAGCTGTTGTAAACTTAAATCATGGATAAAATATTGTTTTGTTTGCTGCTTTAATTTATCATTTT                                            ]
[+] EMBL CF327209             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                TAATGATGTCTCTCAAGCTGCCTTTAGCTTGATTCTTTCATGATCCACTGGTCCAGCGTCCTGTACAACCTAGAGCGAAAGCTATCCATGGACGTTTGATTTGTAGCTGAAATTTGATTACTGATAACCACAAGCTGTTGTAAACTTAAATCATGGATAAAATATTGTTTTGTTTGCTGCTTTAAaaa                                                    ]
[-] EMBL CF327210             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 AATGATGTCTCTCAAGCTGCCTTTAGCTTGATTCTTTCATGATCCACTGGTCCAGCGTCCTGTACAACCTAGAGCGAAAGCTATCCATGGACGTTTGATTTGTAGCTGAAATTTGATTACTGATAACCACAAGCTGTTGTAAACTTAAATCATGGATAAAATATTGTTTTGTTTGCTGCTTTAAaaaa                                                   ]


>consensus_11190#0 CGCCGCCGCCGCCGCCGCCGCCATGAGAGGTCGGAGCAGCCGCGGCCATGCCGCCGCGTC GACGTCGAGCCGGCGTGAGGCCGAGGACGAGGATCCAGCCACCGCCTCCGACGAATCGGG CGACGACGAGGAGGTTTCCTCGTCGTCGGGGTCGGAGTCGGAGAGCGACAGTGACGCCGA GCGGGAGCTGGAGCGCGCGCTCGCCGACGTGCCGTTCGGGGAGCTGCAGCGCGCCCGCGC CGACGGGTCGCTCGGCGGCCGCGGGTTTAGTGCCGCCGCCGCCGCGCAGAAGAAGGCTCG CAGGGCGAGCAAGAAAAGGCCGATGGAGATCAGCACCAAAGTGCGGCCACCGAGGTTCAG GGAGATCATTCAGGTTCCGAAGAAGGTTGTCAGGGACCCAAGATTTGAACCTGTATATGG ACCTGTTGACAAAGAAGGGTTCAGGAAAAGATACAATTTCTTATTTGATGATGAACTTCC TGCAGAGAAAGAGAAACTACAAAAATCGATTAAGAAATCAAAGGACCCTAATGCCATTGA AGAAATGAAGAGTCGCATCACTTGGATTGATAAACAATTGAGGTCTCATCCTAAGAAGAA CGTTGAGTCAGAGATTCTGCGTGAACATATTAAGAAAGAGAGGGAAGCAACAAAGACTGG AAAGCGACCATATTATCTGAAGAAATCTGAAATTCGTGAAAGGAAGTTGATGAACAAGTA CAATGAGCTCAAGGAGGCAGGAAAGCTTGATGCCTTCATGGAGAAGCGGCGGAGGAAGAA CGCCTCCAAAGATCATCGCTACATGCCATATCGAAGGAATGGAGATGGTGCATAATGATG TCTCTCAAGCTGCCTTTAGCTTGATTCTTTCATGATCCACTGGTCCAGCGTCCTGTACAA CCTAGAGCGAAAGCTATCCATGGACGTTTGATTTGTAGCTGAAATTTGATTACTGATAAC CACAAGCTGTTGTAAACTTAAATCATGGATAAAATATTGTTTTGTTTGCTGCTTTAATTT ATCATTTTCTGGAATCAAAGTGAAAACCAGATCAAAAAAAAAAAAAAAAAAA



consensusID : consensus_11190#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 694
fasta sequence
                              [AGAAATGAAGAGTCGCATCACTTGGATTGTAAGTTTGTTTCTACTTTCTGACATTTTGGAGTTATATCAATGAAGAGTAAAGAGCTTTGGTGTTTTCCAATTGATGTTATATTTGTGGCACCTGCTCAGTGAAACTTTCATATACGAAGAAAAAGTCATCAGACTTTAGACCCCATTTTCTTGAGTTCTTTTTGTACTGGATTTCTGATAGAATATAAGACGTTGCACCTCAGCCTTGTAAAGCCTGTTAAGGAGGCATTGCCTGTTGTGCTGCATGATTAGATCTGTTTATATTTTATAACTGCTTTGTAGAAGATCATAAAAATTATAATGTAGTTATCATCAACATCATCTATTGTTGCTTCAAGAATTCAAGAAGGATAAGACAGTGGCAAGCTTCATTTTTTGAAGTTGCTAGTTGCCACGATAGGATAATCACCTTAGCATGAAACTAAAGTAAGAAAACTAGTTGGCCCCATCCAGCAAGCAATTGGCCAGTACAATTTGATAATCTTACTATTACAGTGAGAGTAAGAAATATGCATGATGTATCATAGGCTTGCATGAGCAATCTTATCAGGTTGCTCAATCTTTTTGTATATTTAGTTGATGCCTTGATGACACATACATCTGCAGGATAAACAATTGAGGTCTCATCCTAAGAAGAACGTTGAGTCAGAGATTCTGCGTGAAC]

[+] EMBL CB000574             [AGAAATGAAGAGTCGCATCACTTGGATTGTAAGTTTGTTTCTACTTTCTGACATTTTGGAGTTATATCAATGAAGAGTAAAGAGCTTTGGTGTTTTCCAATTGATGTTATATTTGTGGCACCTGCTCAGTGAAACTTTCATATACGAAGAAAAAGTCATCAGACTTTAGACCCCATTTTCTTGAGTTCTTTTTGTACTGGATTTCTGATAGAATATAAGACGTTGCACCTCAGCCTTGTAAAGCCTGTTAAGGAGGCATTGCCTGTTGTGCTGCATGATTAGATCTGTTTATATTTTATAACTGCTTTGTAGAAGATCATAAAAATTATAATGTAGTTATCATCAACATCATCTATTGTTGCTTCAAGAATTCAAGAAGGATAAGACAGTGGCAAGCTTCATTTTTTGAAGTTGCTAGTTGCCACGATAGGATAATCACCTTAGCATGAAACTAAAGTAAGAAAACTAGTTGGCCCCATCCAGCAAGCAATTGGCCAGTACAATTTGATAATCTTACTATTACAGTGAGAGTAAGAAATATGCATGATGTATCATAGGCTTGCATGAGCAATCTTATCAGGTTGCTCAATCTTTTTGTATATTTAGTTGATGCCTTGATGACACATACATCTGCAGGATAAACAATTGAGGTCTCATCCTAAGAAGAACGTTGAGTCAGAGATTCTGCGTGAAC]


>consensus_11190#1 AGAAATGAAGAGTCGCATCACTTGGATTGTAAGTTTGTTTCTACTTTCTGACATTTTGGA GTTATATCAATGAAGAGTAAAGAGCTTTGGTGTTTTCCAATTGATGTTATATTTGTGGCA CCTGCTCAGTGAAACTTTCATATACGAAGAAAAAGTCATCAGACTTTAGACCCCATTTTC TTGAGTTCTTTTTGTACTGGATTTCTGATAGAATATAAGACGTTGCACCTCAGCCTTGTA AAGCCTGTTAAGGAGGCATTGCCTGTTGTGCTGCATGATTAGATCTGTTTATATTTTATA ACTGCTTTGTAGAAGATCATAAAAATTATAATGTAGTTATCATCAACATCATCTATTGTT GCTTCAAGAATTCAAGAAGGATAAGACAGTGGCAAGCTTCATTTTTTGAAGTTGCTAGTT GCCACGATAGGATAATCACCTTAGCATGAAACTAAAGTAAGAAAACTAGTTGGCCCCATC CAGCAAGCAATTGGCCAGTACAATTTGATAATCTTACTATTACAGTGAGAGTAAGAAATA TGCATGATGTATCATAGGCTTGCATGAGCAATCTTATCAGGTTGCTCAATCTTTTTGTAT ATTTAGTTGATGCCTTGATGACACATACATCTGCAGGATAAACAATTGAGGTCTCATCCT AAGAAGAACGTTGAGTCAGAGATTCTGCGTGAAC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_11190#0      CGCCGCCGCCGCCGCCGCCGCCATGAGAGGTCGGAGCAGCCGCGGCCATGCCGCCGCGTC 60
consensus_11190#1      ------------------------------------------------------------
                                                                                   

consensus_11190#0      GACGTCGAGCCGGCGTGAGGCCGAGGACGAGGATCCAGCCACCGCCTCCGACGAATCGGG 120
consensus_11190#1      ------------------------------------------------------------
                                                                                   

consensus_11190#0      CGACGACGAGGAGGTTTCCTCGTCGTCGGGGTCGGAGTCGGAGAGCGACAGTGACGCCGA 180
consensus_11190#1      ------------------------------------------------------------
                                                                                   

consensus_11190#0      GCGGGAGCTGGAGCGCGCGCTCGCCGACGTGCCGTTCGGGGAGCTGCAGCGCGCCCGCGC 240
consensus_11190#1      --------------------------------------------------AGAAATGAAG 10
                                                                               *   

consensus_11190#0      CGACGGGTCGCTCGGCGGCCGCGGGTTTAGTGCCGCCGCC-GCCGCGCAGAAGAAGGCTC 299
consensus_11190#1      AGTCGCATCACTTGG--ATTGTAAGTTTGTTTCTACTTTCTGACATTTTGGAGTTATATC 68
                        * **  ** ** **     *   ****  * *  *   * * *     * **     **

consensus_11190#0      GCAGGGCGAGCAAGAAAA---GGCCGATGGAGATCAGCACCAAAGTGCGGCCACCGAGGT 356
consensus_11190#1      A-ATGAAGAGTAAAGAGCTTTGGTGTTTTCCAATTGATGTTATATTTGTGGCACC--TGC 125
                         * *  *** **  *     **    *    **       * * *   * ****   * 

consensus_11190#0      TCAGGGAGATCATTCAGGTTCCGA-AGAAGGTTGTCAGGGACCCAAGATTTGAACCTGTA 415
consensus_11190#1      TCAGTGAAA-CTTTCATATACGAAGAAAAAGTCATCAG--ACTTTAGACCCCA--TTTTC 180
                       **** ** * * ****  * *  * * ** **  ****  **   ***    *   * * 

consensus_11190#0      TATGGACCTGTTGACAAAGAAGGGTTCAGGAAAAGATACAATTTCTTATTTGATGATGAA 475
consensus_11190#1      TTGAGTTCTTTTTGTAC---TGGATTTCTGATAGAATATAA----------GACGTTGCA 227
                       *   *  ** **   *     ** **   ** *  *** **          ** * ** *

consensus_11190#0      CTTCCTGCAGAGAAAGAGAAACTACAAAAATCGATTAAGAAATCAAAGGACCCTAATGCC 535
consensus_11190#1      CCTC--------------AGCCTTGTAAAGCCTGTTAAGGAGGCATTG---CCTGTTGT- 269
                       * **              *  **   ***  *  ***** *  **  *   ***  **  

consensus_11190#0      ATTGAAGAAATGAAGAGTCGCATCACTTGGATTGATAAACAATTGAGGTCTCATCCTAAG 595
consensus_11190#1      GCTGCATGATT--AGATCTGTTTATATTTTATAACTGCTTTGTAGAAGA-TCATAAAAAT 326
                         ** *  * *  ***   *  *   **  **   *      * ** *  ****   ** 

consensus_11190#0      AAGAACGTTGA-GTCAGAGATTCTGCGTGAACATATTAAGAAAGAGAGGGAAGCAACAAA 654
consensus_11190#1      TATAATGTAGTTATCATCAACATCATCTATTGTTGCTTCAAGAATTCAAGAAGGATAAGA 386
                        * ** ** *   ***   *       *     *  *   * *      **** *  * *

consensus_11190#0      GACTGGAAAGCGACCATATTATCTGAAGAAATCTGAAATTCGTGAAAGGAAGTTGATGAA 714
consensus_11190#1      CAGTGGCAAGC---TTCATTTTTTGAAG----TTGCTAGTTGCCACGATAGGATAATCAC 439
                        * *** ****      *** * *****     **  * * *  *    * * * ** * 

consensus_11190#0      CAAGTACAATGAGCTCAAGGAGGCAGGAAAGCTTGATGCCTTCATGGAG-AAGCGGCGGA 773
consensus_11190#1      C--TTAGCATGAAACTAAAG---TAAGAAAACTAGTTGGCCCCATCCAGCAAGCAATTGG 494
                       *   **  ****    ** *    * **** ** * ** *  ***  ** ****    * 

consensus_11190#0      GGAAGAACGCCTCCAAAGATCATCGCTACATGCCATATCGAAGGAATGGAGATGGTGCAT 833
consensus_11190#1      CCAGTACAATTTGATAATCTTACTATTACA-GTGAGAGT-AAGAAATATGCATGATGTAT 552
                         *  *     *   **  * *    **** *  * *   *** ***    *** ** **

consensus_11190#0      AATGATGTCTCTCAAGCTGCCTTTAGCTTGATTCTTTCATGATCCACTGGTCCAGCGTCC 893
consensus_11190#1      CATAGGCTTGCATGAGCAATCTTA---TCAGGTTGCTCA--ATCTTTTTGTATATTTAGT 607
                        **    *  *   ***   ***    *    *   ***  ***   * **  *      

consensus_11190#0      TGTACAACCTAGAGCGAAAGCTATCCATGGACGTTTGATTTGTAGCTGAAATTTGATTAC 953
consensus_11190#1      TG-ATGCCTTGATGACACATACATCTGCAG------GATAAACAATTGAGGTCTCATC-C 659
                       ** *   * *   *  * *   ***    *      ***    *  ***  * * **  *

consensus_11190#0      TGATAACCACAAGCTGTTGTAAACTTAAATCATGGATAAAATATTGTTTTGTTTGCTGCT 1013
consensus_11190#1      TAAGAAGAACGTTGAGTCAGAGATTCTG--CGTGAAC----------------------- 694
                       * * **  **     **   * * *     * ** *                        

consensus_11190#0      TTAATTTATCATTTTCTGGAATCAAAGTGAAAACCAGATCAAAAAAAAAAAAAAAAAAA 1072
consensus_11190#1      -----------------------------------------------------------
                                                                                  




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)