cluster # 11191

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Oryza sativa
cluster # 11191 cluster # 11191 Sequences # 8 consensus # 4

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_11191#0 length = 827 sequences # 5
consensus_11191#1 length = 539 sequences # 1

consensus_11191#2 length = 252 sequences # 1
consensus_11191#3 length = 229 sequences # 1

consensusID : consensus_11191#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 827
fasta sequence

                              [ATTCCAATCACCTCGGCGAGATCAGTCCAAACTCCAAAGAAATCAAGAATTCGCAGATGAAGGTGCTTGTGGCGGTGGACGACAGCCGTGGCAGCCACCGCGCGCTGTCCTGGGTGCTCGACCACCTCTTCTTCCCCGCCGCCGCCACCGGCGACGGCGGCGAGGAGGAGCAGGTGCCGCGGCCGGCGCCGGAGCTGGTGCTTGTCCATGCCATTGAGCCGCTCCACCACGTCATGTTCCCCGTCGGCCCAGGGTCGGCGGTGTACGGCGCGGCGTCGATGATGGAGGCGGTGCGGGCGGCGCAGGCGGAGAACGCGCGGAACCTGCTCGTCAGGGCGAGGCTGATCTGCGAGCGGCGTGGGGTGGCCGCGGCGACGGTGGCGGTGGAGGGGGAGCCCCGGGAGGCGCTGTGCCGCGCCGCTGAGGACGCCGGCGCCGGCCTGCTCGTCGTCGGCAGCCGCGGCCTCGGCGCCCTCAAGAGGGCGTTCCTGGGCAGCGTCAGCGACTACTGCGCGCACCGCGCGAGCTGCCCGATCATGGTCGTCAAGCCGCCTCCCGACGCCGGCGACGAAGACGACGGCGGCCACTGCACGAGCAACTGAACTGATGATGGATCGCCATTACATCCGGAAGACCAGCTTTCGAGGGGGAAAGAGAATCAAGAGAGAGACACTTGTTTTACCATTGTTGTTCCTGCTCAGTGCTGAATTTGTCCTTCCAAAGTTCCTACCCTGAAGCGCCGTCAATAAACATTTTTACTGTGTGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGCCAAAAAAAAAAAAAAAGGGA]

[+] EMBL AK107152             [ATTCCAATCACCTCGGCGAGATCAGTCCAAACTCCAAAGAAATCAAGAATTCGCAGATGAAGGTGCTTGTGGCGGTGGACGACAGCCGTGGCAGCCACCGCGCGCTGTCCTGGGTGCTCGACCACCTCTTCTTCCCCGCCGCCGCCACCGGCGACGGCGGCGAGGAGGAGCAGGTGCCGCGGCCGGCGCCGGAGCTGGTGCTTGTCCATGCCATTGAGCCGCTCCACCACGTCATGTTCCCCGTCGGCCCAGGGTCGGCGGTGTACGGCGCGGCGTCGATGATGGAGGCGGTGCGGGCGGCGCAGGCGGAGAACGCGCGGAACCTGCTCGTCAGGGCGAGGCTGATCTGCGAGCGGCGTGGGGTGGCCGCGGCGACGGTGGCGGTGGAGGGGGAGCCCCGGGAGGCGCTGTGCCGCGCCGCTGAGGACGCCGGCGCCGGCCTGCTCGTCGTCGGCAGCCGCGGCCTCGGCGCCCTCAAGAGGGCGTTCCTGGGCAGCGTCAGCGACTACTGCGCGCACCGCGCGAGCTGCCCGATCATGGTCGTCAAGCCGCCTCCCGACGCCGGCGACGAAGACGACGGCGGCCACTGCACGAGCAACTGAACTGATGATGGATCGCCATTACATCCGGAAGACCAGCTTTCGAGGGGGAAAGAGAATCAAGAGAGAGACACTTGTTTTACCATTGTTGTTCCTGCTCAGTGCTGAATTTGTCCTTCCAAAGTTCCTACCCTGAAGCGCCGTCAATAAACATTTT                                                                       ]
[+] EMBL AU174536             [                                 CCAAAGAAATCAAGAATTCGCAGATGAAGGTGCTTGTGGCGGTGGACGACAGCCGTGTCAGCCACCGCGCGCTGTCCTGGGTGCTCGACCACCTCTTCTTCCCCGCCGCCGCCACCGGCGACGGCGGCGAGGAGGAGCAGGTGCCGCGGCCGGCGCCGGAGCTGGTGCTTGTCCATGCCATTGAGCCGCTCCACCACGTCATGTTCCCCGTCGGCCCAGGGTCGGCGGTGTACGGCGCGGCGTCGATGATGGAGGCGGTGCGGGCGGCGCAGGCGGAGAACGCGCGGAACCTGCTCGTCAGGGCGAGGCTGATCTGCGAGCGGCGTGGGGTGGCCGCGGCGACGGTGGCGGTGGAGGGGGAGCCCCGGGAGGCGCTGTGCCGCGCCGCTGAGGACGCCGGCGCCGGCCTGCTCGTCGTCGGCAGCC                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL AU174537             [                                                                                                                                                                                                                                                                                                                                            AGGGCGAGGCTGATCTGCGANCGGCGTGGGGTGGCCNCGGCGACGGTGGCGGTGGAGGGGGAGCCCCGGGAGGCGCTGTGCCGCGCCGCTGAGGACGCCGGCGCCGGCCTGCTCGTCGTCGGCAGCCGCGGCCTCGGCGCCCTCAAGAGGGCGTTCCTGGGCAGCGTCAGCGACTACTGCGCGCACCGCGCGAGCTGCCCGATCATGGTCGTCAAGCCGCCTCCCGACGCCGGCGACGAAGACGACGGCGGCCACTGCACGAGCAACTGAACTGATGATGGATCGCCATTACATCCGGAAGACCAGCTTTCGAGGGGGAAAGAGAATCAAGAGAGAGACACTTGTTTTACCATTGTTGTTCCTGCTCAGTGCTGAATTTGTCCTTCCAAAGTTCCTACCCTGAAGCGCCGTCAATAAACATTTTTACTGTGTGCAAAAAAAA                                                     ]
[+] EMBL CF313865             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        GAACTGATGATGGATCGCCATTACATCCGGAAGACCAGCTTTCGAGGGGGAAAGAGAATCAAGAGAGAGACACTTGTTTTACCATTGTTGTTCCTGCTCAGTGCTGAATTTGTCCTTCCAAAGTTCCTACCCTGAAGCGCCGTCAATAAACATTTTTACTGTGTGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA                           ]
[+] EMBL CF326986             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     TTTACCGTTGTTGTTCCTGCTCAGTGCTGAATTTGTCCTTCCAAAGTTCCTACCCTGAAGCGCCGTCAATAAACATTTTTACTGTGTGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGCCAAAAAAAAAAAAAAAGGGA]




>consensus_11191#0
ATTCCAATCACCTCGGCGAGATCAGTCCAAACTCCAAAGAAATCAAGAATTCGCAGATGA
AGGTGCTTGTGGCGGTGGACGACAGCCGTGGCAGCCACCGCGCGCTGTCCTGGGTGCTCG
ACCACCTCTTCTTCCCCGCCGCCGCCACCGGCGACGGCGGCGAGGAGGAGCAGGTGCCGC
GGCCGGCGCCGGAGCTGGTGCTTGTCCATGCCATTGAGCCGCTCCACCACGTCATGTTCC
CCGTCGGCCCAGGGTCGGCGGTGTACGGCGCGGCGTCGATGATGGAGGCGGTGCGGGCGG
CGCAGGCGGAGAACGCGCGGAACCTGCTCGTCAGGGCGAGGCTGATCTGCGAGCGGCGTG
GGGTGGCCGCGGCGACGGTGGCGGTGGAGGGGGAGCCCCGGGAGGCGCTGTGCCGCGCCG
CTGAGGACGCCGGCGCCGGCCTGCTCGTCGTCGGCAGCCGCGGCCTCGGCGCCCTCAAGA
GGGCGTTCCTGGGCAGCGTCAGCGACTACTGCGCGCACCGCGCGAGCTGCCCGATCATGG
TCGTCAAGCCGCCTCCCGACGCCGGCGACGAAGACGACGGCGGCCACTGCACGAGCAACT
GAACTGATGATGGATCGCCATTACATCCGGAAGACCAGCTTTCGAGGGGGAAAGAGAATC
AAGAGAGAGACACTTGTTTTACCATTGTTGTTCCTGCTCAGTGCTGAATTTGTCCTTCCA
AAGTTCCTACCCTGAAGCGCCGTCAATAAACATTTTTACTGTGTGCAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAGCCAAAAAAAAAAAAAAAGGGA

consensusID : consensus_11191#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 539
fasta sequence

                              [TGCTTACGGGTGTTCGCGCAGGGTCGGCGGTGTACGGCGCGGCGTCGATGATGGAGNCGGTGCGGGCGGCGCAGGCGGAGAACGCGCGGAACCTGCTCGTCAGGGCGAGGCTGATCTGCGAGCGGCGTGGGGTGGCCGCGGCGACGGTGGCGGTGGAGGGGGAGCCCCGGGAGGCGCTGTGCCGCGCCGCTGAGGACGCCGGCGCCGGCCTGCTCGTCGTCGGCAGCCGCGGCCTCGGCGCCCTCAAGAGGGCGTTCCTGGGCAGCGTCAGCGACTACTGCGCGCACCGCGCGAGCTGCCCGATCATGGTCGTCAAGCCGCCTCCCGACGCCGGCGACGAAGACGACGGCGGCCACTGCACAACAACTGAACTGATGATGGATCGCCATTACATCCGGAAGACCAGAATCGAGGGGGAAAGAGAATCAAGAGAGAGACACTTGTTTTACCATTGTTGTTCCTGCTCAGTGCTGAATTTGTCCTTCCAAAGTTCCTACCCTGAAGCGCCGTCAATAAACATTTTTACTGTGTGCTAAAAA]

[-] EMBL CF305999             [TGCTTACGGGTGTTCGCGCAGGGTCGGCGGTGTACGGCGCGGCGTCGATGATGGAGNCGGTGCGGGCGGCGCAGGCGGAGAACGCGCGGAACCTGCTCGTCAGGGCGAGGCTGATCTGCGAGCGGCGTGGGGTGGCCGCGGCGACGGTGGCGGTGGAGGGGGAGCCCCGGGAGGCGCTGTGCCGCGCCGCTGAGGACGCCGGCGCCGGCCTGCTCGTCGTCGGCAGCCGCGGCCTCGGCGCCCTCAAGAGGGCGTTCCTGGGCAGCGTCAGCGACTACTGCGCGCACCGCGCGAGCTGCCCGATCATGGTCGTCAAGCCGCCTCCCGACGCCGGCGACGAAGACGACGGCGGCCACTGCACAACAACTGAACTGATGATGGATCGCCATTACATCCGGAAGACCAGAATCGAGGGGGAAAGAGAATCAAGAGAGAGACACTTGTTTTACCATTGTTGTTCCTGCTCAGTGCTGAATTTGTCCTTCCAAAGTTCCTACCCTGAAGCGCCGTCAATAAACATTTTTACTGTGTGCTAAAAA]




>consensus_11191#1
TGCTTACGGGTGTTCGCGCAGGGTCGGCGGTGTACGGCGCGGCGTCGATGATGGAGNCGG
TGCGGGCGGCGCAGGCGGAGAACGCGCGGAACCTGCTCGTCAGGGCGAGGCTGATCTGCG
AGCGGCGTGGGGTGGCCGCGGCGACGGTGGCGGTGGAGGGGGAGCCCCGGGAGGCGCTGT
GCCGCGCCGCTGAGGACGCCGGCGCCGGCCTGCTCGTCGTCGGCAGCCGCGGCCTCGGCG
CCCTCAAGAGGGCGTTCCTGGGCAGCGTCAGCGACTACTGCGCGCACCGCGCGAGCTGCC
CGATCATGGTCGTCAAGCCGCCTCCCGACGCCGGCGACGAAGACGACGGCGGCCACTGCA
CAACAACTGAACTGATGATGGATCGCCATTACATCCGGAAGACCAGAATCGAGGGGGAAA
GAGAATCAAGAGAGAGACACTTGTTTTACCATTGTTGTTCCTGCTCAGTGCTGAATTTGT
CCTTCCAAAGTTCCTACCCTGAAGCGCCGTCAATAAACATTTTTACTGTGTGCTAAAAA

consensusID : consensus_11191#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 252
fasta sequence

                              [ACTGCATGGACTGAAGGAGTAGAAAAATTTTATAAGAGAGAGACACTTGTTTTACCATTGTTGTTCCTGCTCAGTGCTGAATTTGTCCTTCCAAAGTTCCTACCCTGAAGCGCCGTCAATAAACATTTTTACTGTGTGCAAAAAAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL CF318721             [ACTGCATGGACTGAAGGAGTAGAAAAATTTTATAAGAGAGAGACACTTGTTTTACCATTGTTGTTCCTGCTCAGTGCTGAATTTGTCCTTCCAAAGTTCCTACCCTGAAGCGCCGTCAATAAACATTTTTACTGTGTGCAAAAAAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]




>consensus_11191#2
ACTGCATGGACTGAAGGAGTAGAAAAATTTTATAAGAGAGAGACACTTGTTTTACCATTG
TTGTTCCTGCTCAGTGCTGAATTTGTCCTTCCAAAGTTCCTACCCTGAAGCGCCGTCAAT
AAACATTTTTACTGTGTGCAAAAAAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AATTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAA

consensusID : consensus_11191#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 229
fasta sequence

                              [ATGGATTGAAGGAGTAAAAAGACCACCCGAATTGATGATGGTTCCCCATTACATCCGGAAGCCCAGCTTTGGGGGGGGAAAGAGAATCAAAAAAGAGCCCCTTGTTTTCCCATTGTTGTTCCTGCTAAGGGCTGAATTTGCCCTTCCAAAGTTCCTCCCCTGAAGCGCCGTCAATAAACATTTTTTTGGGGGGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[-] EMBL CF313866             [ATGGATTGAAGGAGTAAAAAGACCACCCGAATTGATGATGGTTCCCCATTACATCCGGAAGCCCAGCTTTGGGGGGGGAAAGAGAATCAAAAAAGAGCCCCTTGTTTTCCCATTGTTGTTCCTGCTAAGGGCTGAATTTGCCCTTCCAAAGTTCCTCCCCTGAAGCGCCGTCAATAAACATTTTTTTGGGGGGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]




>consensus_11191#3
ATGGATTGAAGGAGTAAAAAGACCACCCGAATTGATGATGGTTCCCCATTACATCCGGAA
GCCCAGCTTTGGGGGGGGAAAGAGAATCAAAAAAGAGCCCCTTGTTTTCCCATTGTTGTT
CCTGCTAAGGGCTGAATTTGCCCTTCCAAAGTTCCTCCCCTGAAGCGCCGTCAATAAACA
TTTTTTTGGGGGGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_11191#0      ATTCCAATCACCTCGGCGAGATCAGTCCAAACTCCAAAGAAATCAAGAATTCGCAGATGA 60
consensus_11191#1      ------------------------------------------------------------
consensus_11191#3      ------------------------------------------------------------
consensus_11191#2      ------------------------------------------------------------
                                                                                   

consensus_11191#0      AGGTGCTTGTGGCGGTGGACGACAGCCGTGGCAGCCACCGCGCGCTGTCCTGGGTGCTCG 120
consensus_11191#1      ------------------------------------------------------------
consensus_11191#3      ------------------------------------------------------------
consensus_11191#2      ------------------------------------------------------------
                                                                                   

consensus_11191#0      ACCACCTCTTCTTCCCCGCCGCCGCCACCGGCGACGGCGGCGAGGAGGAGCAGGTGCCGC 180
consensus_11191#1      ------------------------------------------------------------
consensus_11191#3      ------------------------------------------------------------
consensus_11191#2      ------------------------------------------------------------
                                                                                   

consensus_11191#0      GGCCGGCGCCGGAGCTGGTGCTTGTCCATGCCATTGAGCCGCTCCACCACGTCATGTTCC 240
consensus_11191#1      ---------------------------------------------------TGCTTACGG 9
consensus_11191#3      ------------------------------------------------------------
consensus_11191#2      ------------------------------------------------------------
                                                                                   

consensus_11191#0      CCGTCGGCCCAGGGTCGGCGGTGTACGGCGCGGCGTCGATGATGGAGGCGGTGCGGGCGG 300
consensus_11191#1      GTGTTCGCGCAGGGTCGGCGGTGTACGGCGCGGCGTCGATGATGGAGNCGGTGCGGGCGG 69
consensus_11191#3      ------------------------------------------------------------
consensus_11191#2      ------------------------------------------------------------
                                                                                   

consensus_11191#0      CGCAGGCGGAGAACGCGCGGAACCTGCTCGTCAGGGCGAGGCTGATCTGCGAGCGGCGTG 360
consensus_11191#1      CGCAGGCGGAGAACGCGCGGAACCTGCTCGTCAGGGCGAGGCTGATCTGCGAGCGGCGTG 129
consensus_11191#3      ------------------------------------------------------------
consensus_11191#2      ------------------------------------------------------------
                                                                                   

consensus_11191#0      GGGTGGCCGCGGCGACGGTGGCGGTGGAGGGGGAGCCCCGGGAGGCGCTGTGCCGCGCCG 420
consensus_11191#1      GGGTGGCCGCGGCGACGGTGGCGGTGGAGGGGGAGCCCCGGGAGGCGCTGTGCCGCGCCG 189
consensus_11191#3      ------------------------------------------------------------
consensus_11191#2      ------------------------------------------------------------
                                                                                   

consensus_11191#0      CTGAGGACGCCGGCGCCGGCCTGCTCGTCGTCGGCAGCCGCGGCCTCGGCGCCCTCAAGA 480
consensus_11191#1      CTGAGGACGCCGGCGCCGGCCTGCTCGTCGTCGGCAGCCGCGGCCTCGGCGCCCTCAAGA 249
consensus_11191#3      ------------------------------------------------------------
consensus_11191#2      ------------------------------------------------------------
                                                                                   

consensus_11191#0      GGGCGTTCCTGGGCAGCGTCAGCGACTACTGCGCGCACCGCGCGAGCTGCCCGATCATGG 540
consensus_11191#1      GGGCGTTCCTGGGCAGCGTCAGCGACTACTGCGCGCACCGCGCGAGCTGCCCGATCATGG 309
consensus_11191#3      ------------------------------------------------------------
consensus_11191#2      ------------------------------------------------------------
                                                                                   

consensus_11191#0      TCGTCAAGCCGCCTCCCGACGCCGGCGACGAAGACGACGGCGGCCACTGCACGAGCAACT 600
consensus_11191#1      TCGTCAAGCCGCCTCCCGACGCCGGCGACGAAGACGACGGCGGCCACTGCACAA-CAACT 368
consensus_11191#3      --------------------------------ATGGATTGAAGGAGTAAAAAGACCACCC 28
consensus_11191#2      ------------------------------------------------------------
                                                                                   

consensus_11191#0      GAACTGATGATGGATCGCCATTACATCCGGAAGACCAGCTTTCGAGGGGGAAAGAGAATC 660
consensus_11191#1      GAACTGATGATGGATCGCCATTACATCCGGAAGACCAGAAT-CGAGGGGGAAAGAGAATC 427
consensus_11191#3      GAATTGATGATGGTTCCCCATTACATCCGGAAGCCCAGCTTTGGGGGGGGAAAGAGAATC 88
consensus_11191#2      -------------------------ACTGCATGGACTGAA--GGAGTAGAAAAATTTTAT 33
                                                 * * * *  * *     * *  * ***       

consensus_11191#0      AAGAGAGAGACACTTGTTTTACCATTGTTGTTCCTGCTCAGTGCTGAATTTGTCCTTCCA 720
consensus_11191#1      AAGAGAGAGACACTTGTTTTACCATTGTTGTTCCTGCTCAGTGCTGAATTTGTCCTTCCA 487
consensus_11191#3      AAAAAAGAGCCCCTTGTTTTCCCATTGTTGTTCCTGCTAAGGGCTGAATTTGCCCTTCCA 148
consensus_11191#2      AAGAGAGAGACACTTGTTTTACCATTGTTGTTCCTGCTCAGTGCTGAATTTGTCCTTCCA 93
                       ** * **** * ******** ***************** ** ********** *******

consensus_11191#0      AAGTTCCTACCCTGAAGCGCCGTCAATAAACATTTTTACTGTGTGCAAAAAAAAAAAAAA 780
consensus_11191#1      AAGTTCCTACCCTGAAGCGCCGTCAATAAACATTTTTACTGTGTGCTAAAAA-------- 539
consensus_11191#3      AAGTTCCTCCCCTGAAGCGCCGTCAATAAACATTTTTTTGGGGGGCAAAAAAAAAAAAAA 208
consensus_11191#2      AAGTTCCTACCCTGAAGCGCCGTCAATAAACATTTTTACTGTGTGCAAAAAAAGAAAAAA 153
                       ******** ****************************   * * ** *****        

consensus_11191#0      AAAAAAAAAAAAAAAAAAAAAAAAAGCCAAAAAAAAAAAAAAAGGGA------------- 827
consensus_11191#1      ------------------------------------------------------------
consensus_11191#3      AAAAAAAAAAAAAAAAAAAAA--------------------------------------- 229
consensus_11191#2      AAAAAAAAAAAAAAAAAAAAAAAAAAAAATTTAAAAAAAAAAAAAAAAAAAAAAAAAAAA 213
                                                                                   

consensus_11191#0      ---------------------------------------
consensus_11191#1      ---------------------------------------
consensus_11191#3      ---------------------------------------
consensus_11191#2      AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 252