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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11199#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1618 fasta sequence
[GCCTCGCCTCTCCGCCGCGGCCGCGGCCGGCGGCCCGCCTCCGCGATGGGCCAGGCCCCGAGCTCGCCGCCGGGGCCGGGGCGCAGCCGCAGCTGCGGAATCTCGAGATGGCCGCCGCCGCCGCCGCCGCTGCAGGGGCTCCGCCTCGACCTAGGGTTGCTGCTTGGCCGCAAGGCGAGGACGAGGTCCGGGGGCGGGAAGCTGGACCTGGCGAACTGGCTGAGGTGCTTCGTGGCGCCTCCCCTGCCGCAGCCTTCGGAGGCGGAGGCGAGCGCCGAGGGGAGGGACGCGGGGAACCGCGAGGAGGAGGAGGCCGGGAATGAGGAGGCCGATCACCTCGTCGTCATGGTCAACGGGCTGTACGGGAGGTTTCGGCGGATTGGAAATTTGCTGCAGAGCAGTTTGTGAAGAGGCTGCCGGGGAAAGTCTTCGTGCATCGCAGTCAGTGCAACCATTCAAAGTTAACATATGATGGAGTCGACTTGATGGGAGAAAGGTTAGCTGAAGAGGTTCGACAAGTTGTTCAGAGGAGAAGTAACCTGCAGAAGATCTCTTTTGTTGCCCATTCACTTGGTGGTTTAGTTACAAGATATGCAATTGGAAAACTGTATGATCCATCAATAAATGAAGAGGCTTCTCTTGATAAGGAAAACTTCTCAAATGAACTGAGAACATCTGATGGTGGTAAAATAGCTGGTTTGGAGCCAATAAATTTTATTGCAGTTGCTACTCCACACTTGGGATCAAGGTGGAATAAACAACTTCCCTTCCTTTTTGGTGTTCCACTTTTGGAGCGAACTGCTGCAGTAACTGCACATTTTATAGTTGGGAGAACAGGGAAACATTTATTCCTTACAGACTCAGATGATGGGAAGCCCCCACTTCTCCTACGAATGGCTGAAGACTGTGATGATGGAAAATTCATGTCTGCGCTGCGCTCTTTTAAGCGCCGTGTTGCCTATGCGAATGTAACATATGATCATATAGTTGGCTGGAGAACATCATCAATTCGGCGTCAGCACGAATTACCTAAATTGCAGTTAACACCAAGTGATAAAAAGTATCCACATATTATCCATGTTGACAAAGGAAATTCAGAGCATCATCAGCAAGAGGAATCTGTAGAAGCTTCACTTACAGATAGCATGGAAGAAGTGATGATCCATGGCCTTACACAAGTTCCCTGGGAACGTGTTGATGTATGCTTTCATAAGAGCTGGCTAAGATACAATGCCCACCACAATATCCAGGTTAGGATCCATCCTGTTAATTCAGA-CGGCGAAGACGTAATCTACCATTTGATAGACAA-TTTTCTAGTGTAGCTAAATTTCGATGAATTATT-GATAAATAACAGCCTTTTATA-CGGGGGGTTAACTCCATTGTACCACTCTAGTTAGGTGATGACCCCCGTGGACCAACAT-GCCTGGTTCATTAGATCACACGTGATGTAAGGTTATCATTTATCGGAGCCTGGGTGCCTCTGATTTGTTGTCTTGTAGTGTACCTGTGTAAGGATAAGTGTTAGATTGTTAATAGTGTAAATGTCGGTGTAATATTTTTTGTACATATAAATTTTATAAACTTGACTCCCTCTGGTTGTATAGATCCATCAATAAAT]
[+] EMBL CB634792 [GCCTCGCCTCTCCGCCGCGGCCGCGGCCGGCGGCCCGCCTCCGCGATGGGCCAGGCCCCGAGCTCGCCGCCGGGGCCGGGGCGCAGCCGCAGCTGCGGAATCTCGAGATGGCCGCCGCCGCCGCCGCCGCTGCAGGGGCTCCGCCTCGACCTAGGGTTGCTGCTTGGCCGCAAGGCGAGGACGAGGTCCGGGGGCGGGAAGCTGGACCTGGCGAACTGGCTGAGGTGCTTCGTGGCGCCTCCCCTGCCGCAGCCTTCGGAGGCGGAGGCGAGCGCCGAGGGGAGGGACGCGGGGAACCGCGAGGAGGAGGAGGCCGGGAATGAGGAGGCCGATCACCTCGTCGTCATGGTCAACGGGCTGTACGGGAGGTTTCGGCGGATTGGAAATTTGCTGCAGAGCAGTTTGTGAAGAGGCTGCCGGGGAAAGTCTTCGTGCATCGCAGTCAGTGCAACCATTCAAAGTTAACATATGATGGAGTCGACTTGATGGGAGAAAGGTTAGCTGAAGAGGTTCGACAAGTTGTTCAGAGGAGAAGTAACCTGCAGAAGATCTCTTTTGTTGCCCATTCACTTGGTGGTTTAGTTACAAGATATGCAATTGGAAAACTGTATGATCCATCAATAAATGAAG ]
[+] EMBL CB657226 [ GGGGCGGGAAGCTGGACCTGGCGAACTGGCTGAGGTGCTTCGTGGCGCCTCCCCTGCCGCAGCCTTCGGAGGCGGAGGCGAGCGCCGAGGGGAGGGACGCGGGGAACCGCGAGGAGGAGGAGGCCGGGAATGAGGAGGCCGATCACCTCGTCGTCATGGTCAACGGGCTGTACGGGAG TTCGGCGGATTGGAAATTTGCTGCAGAGCAGTTTGTGAAGAGGCTGCCGGGGAAAGTCTTCGTGCATCGCAGTCAGTGCAACCATTCAAAGTTAACATATGATGGAGTCGACTTGATGGGAGAAAGGTTAGCTGAAGAGGTTCGACAAGTTGTTCAGAGGAGAAGTAACCTGCAGAAGATCTCTTTTGTTGCCCATTCACTTGGTGGTTTAGTTACAAGATATGCAATTGGAAAACTGTATGATCCATCAATAAATGAAG ]
[+] EMBL CA767131 [ aagggGGAGAAGTAACCTGCAGAAGATCTCTTTTGTTGCCCATTCACTTGGTGGTTTAGTTACAAGATATGCAATTGGAAAACTGTATGATCCATCAATAAATGAAGAGGCTTCTCTTGATAAGGAAAACTTCTCAAATGAACTGAGAACATCTGATGGTGGTAAAATAGCTGGTTTGGAGCCAATAAATTTTATTGCAGTTGCTACTCCACACTTGGGATCAAGGTGGAATAAACAACTTCCCTTCCTTTTTGGTGTTCCACTTTTGGAGCGAACTGCTGCAGTAACTGCACATTTTATAGTTGGGAGAACAGGGAAACATTTATTCCTTACAGACTCAGATGATGGGAAGCCTCCACTTCTCCTACGAATGGCTGAAGACTGTGATGATGGAAAATTCATGTCTGCGCTGCGCTCTTTTAAGCGCCGTGTTGCCTATGCGAATGTAACATATGATCATATAGTTGGCTGGAGAACATCATCAATTCGGCGTCAGCACGAATTACCTAAATTGCAGTTAACACCAAGTGATAAAAAGTATCCACATATTATCCATGTTGACAAAGGAAATTCAGAGCATCATCAGCAAGAGGAATCTGTAGAAGCTTCACTTACAGATAGCATGGAAGAAGTGATGATCCATGGCCTTACACAAGNTNCCTGGGAACGNGNTGATGNATGCTTTCATAAGAGCTGGCTAAGATACAATGNCCACCACAATATNCAGGNTAGGATCCATNCTGGTAATTCANACCGGNGAANACGTAATCTACCATTTGATAGACAANTTTTNTAGGGNAGCTNAATTTCGATGNANTATTGGATAAANAACAGCCTTTT TACCGGGGGGGTAACTNCATTGGNCCACTCTAGTTAGGGGATGACCCCCGGGGNCC ACATGGCCNGG ]
[+] EMBL CB668899 [ GAACATCTGATGGTGGTAAAATAGCTGGTTTGGAGCCAATAAATTTTATTGCAGTTGCTACTCCACACTTGGGATCAAGGTGGAATAAACAACTTCCCTTCCTTTTTGGTGTTCCACTTTTGGAGCGAACTGCTGCAGTAACTGCACATTTTATAGGTGGGAGAACAGGGAAACATTTATTCCTTACAGACTCAGATGATGGGAAGCCCCCACTTCTCCTACGAATGGCTGAAGACTGTGATGATGGAAAATTCATGTCTGCGTTGCGCTCTTTTAAGCGCCGTGGTGCCTATGCGAATGTAACATATGATCATATAGTTGGCTGGAGAACATCATCAATTCGGCGTCAGCACGAATTACCTAAATTGCAGTTAACACCAAGTGATAAAAAGTATCCACATATTATCCATGTTGACAAAGGAAATTCAGAGCATCATCAGCAAGAGGAATCTGTAGAAGCTTCACTTACAGATAGCATGGAAGAAGTGATGATCCATGGCCTTACACAAGTTCCCTGGGAACGTGTTGATGTATGCTTTCATAAGAGCTGGCTAAGAT ]
[-] EMBL CB634793 [ AACTGCACATTTTATAGTTGGGAGAACAGGGAAACATTTATTCCTTACAGACTCAGATGATGGGAAGCCCCCACTTCTCCTACGAATGGCTGAAGACTGTGATGATGGAAAATTCATGTCTGCGCTGCGCTCTTTTAAGCGCCGTGTTGCCTATGCGAATGTAACATATGATCATATAGTTGGCTGGAGAACATCATCAATTCGGCGTCAGCACGAATTACCTAAATTGCAGTTAACACCAAGTGATAAAAAGTATCCACATATTATCCATGTTGACAAAGGAAATTCAGAGCATCATCAGCAAGAGGAATCTGTAGAAGCTTCACTTACAGATAGCATGGAAGAAGTGATGATCCATGGCCTTACACAAGTTCCCTGGGAACGTGTTGATGTATGCTTTCATAAGAGCTGGCTAAGATACAATGCCCACCACAATATCCAGGTTAGGATCCATCCTGTTAATTCAGA CGGCGAAGACGTAATCTACCATTTGATAGACAA TTTTCTAGTGTAGCTAAATTTCGATGAATTATT GATAAATAACAGCCTTTTATA CGGTGGGTTAACTCCATTGTACCACTCTAGTTAGGTGATGACACCCGTGGACCAACAT GCCTGGTTCATTAGATCACACGTGATGTAAGGTTATCATTTATCGGAGCCTGGGTGCCTCTGATTTGTTGTCTTGTAGTGTAACTGTGTAAGGATAAGTGTTAGATTGTTAATAGTGTAAATGTCGGTGTAAT ]
[-] EMBL CB635758 [ CGTGTTCCCTATGCGAATGTAACATATGATCATATAGTTGGCTGGAGAACATCATCAATTCGGCGTCAGCACGAATTACCTAAATTCCAGTTAACACCAAGTGATAAAAAGTATCCACATATTATCCATGTTGACAAAGGAAATTCAGACCATCATCACCAAGAGGAATCTGTAGAAGCTTCACTTACAGATACCATGGAAGAAGTGATGATCCATGCCCTTACACAAGTTCCCTGGGAACGTGTTGATGTATCCTTTCATAAGAGCTGGCTAAGATACAATGCCCCCCCCAATATCCAGGTTAGGATCCATCCTGTTAATTCAGA CGGCGAAGACGTAATCTCCCATTTGATAGACAA TTTTCTAGTGTAGCTAAATTTCGATGAATTATT GATAAATAACACCCTTTTATA CGGTGGGTTAACTCCATTGTACCACTCTAGTTAGGTGATGACACCCGTGGACCAACAT GCCTGGTTCATTAGATCACACGTGATGTAAGGTTATCATTTATCGGAGCCTGGGTCCCTCTGATTTGTTGTCTTGTAGTGTACCTGTGTAAGGATAAGTGTTAGATTGTTATTTTTGGGAATGTCGGTGTAATATTTTTTGTACATATAAATTTTATAAACTTGACTCCCTC ]
[-] EMBL CB635757 [ CGTGTTGCCTATGCGAATGTAACATATGATCATATAGTTGGCTGGAGAACATCATCAATTCGGGGTCAGCACGAATTCCCTAAATTGCAGTTAACCCCAAGTGATAAAAAGTATCCACATATTATCCATGTTGACAAAGGAAATTCAGAGCATCATCAGCAAGAGGAATCTGTAGAAGCTTCACTTACAGATAGCATGGAAGAAGTGATGATCCATGGCCTTACACAAGTTCCCTGGGAACGTGTTGATGTATGCTTTCATAAGAGCTGGCTAAGATACAATGCCCCCCCCAATATCCAGGTTAGGATCCATCCTGTTAATTCAGA CGGCGAAGACGTAATCTACCATTTGATAGCCAA TTTTTTAGTGTAGCTAAATTTCGATGAATTATT GATAAATAACAGCCTTTTATA CGGGGGGTTAACTCCATTGTACCACTCTAGTTAGGTGATGACCCCCGTGGACCAACAT GCCTGGTTCATTAGATCCCACGTGATGTAAGGTTATCATTTATCGGAGCCTGGGTGCCTCTGATTTGTTGTCTTGTAGTGTACCGGTGTAAGGATAAGTGTTAGATTGTTAATAGTGTAAATGTCGGTGTAATATTTTTTGTACATATAAATTTTATAAACTTGACTGCCTCTGGTTGTATAGATCCATCAATAAAT]
consensusID : consensus_11199#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 651 fasta sequence
[ATGATCATATAGTTGGCTGGAGAACATCATCAATTCGGCGTCAGCACGAATTCCCTAAATTGCAGTTACCACCAAGTGATAAAAAGTATCCACATATTATCCATGTTGCCAAAGGAAATTCAGAGCATCATCAGCAAGAGGAATCTGTAGAAGCTTCACTTCCAGATAGCATGGAAGAAGTGATGATCCATGCCCTTACACAAGTTCCCTGGGAACGTGTTGATGTATGCTTTCATAAGAGCTGGTTAAGATACAATGCCCCCCCCAATATCCAGGTTAGGATCCATCCTGTTAATTCAGACGGGGAAGACGTAATCTCCCATTTGATAGACAATTTTTTAGTGTAGCTAAATTTCGATGAATTATTGATAAATACCACCCTTTTATACGGGGGGTTAACTCCATTGTCCCACTCTAGTTAGGTGATGACCCCCGTGGACCAACATGCCTGGTTCATTAGATCCCACGTGATGTAAGGTTATCATTTATCGGAGCCTGGGTGCCTCTGATTTGTTGTCTTGTAGTGTAACTGTGTAAGGATAATTGTTAGATTGTTAATAGTGTAAATGTCGGTGTAATATTTTTTGTACATATAAATTTTATAAACTTGACTCCCTCTGGTTGTATATGCAGTTCTTTGAAGGAAGATGC]
[-] EMBL CB668900 [ATGATCATATAGTTGGCTGGAGAACATCATCAATTCGGCGTCAGCACGAATTCCCTAAATTGCAGTTACCACCAAGTGATAAAAAGTATCCACATATTATCCATGTTGCCAAAGGAAATTCAGAGCATCATCAGCAAGAGGAATCTGTAGAAGCTTCACTTCCAGATAGCATGGAAGAAGTGATGATCCATGCCCTTACACAAGTTCCCTGGGAACGTGTTGATGTATGCTTTCATAAGAGCTGGTTAAGATACAATGCCCCCCCCAATATCCAGGTTAGGATCCATCCTGTTAATTCAGACGGGGAAGACGTAATCTCCCATTTGATAGACAATTTTTTAGTGTAGCTAAATTTCGATGAATTATTGATAAATACCACCCTTTTATACGGGGGGTTAACTCCATTGTCCCACTCTAGTTAGGTGATGACCCCCGTGGACCAACATGCCTGGTTCATTAGATCCCACGTGATGTAAGGTTATCATTTATCGGAGCCTGGGTGCCTCTGATTTGTTGTCTTGTAGTGTAACTGTGTAAGGATAATTGTTAGATTGTTAATAGTGTAAATGTCGGTGTAATATTTTTTGTACATATAAATTTTATAAACTTGACTCCCTCTGGTTGTATATGCAGTTCTTTGAAGGAAGATGC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_11199#0 GCCTCGCCTCTCCGCCGCGGCCGCGGCCGGCGGCCCGCCTCCGCGATGGGCCAGGCCCCG 60
consensus_11199#1 ------------------------------------------------------------
consensus_11199#0 AGCTCGCCGCCGGGGCCGGGGCGCAGCCGCAGCTGCGGAATCTCGAGATGGCCGCCGCCG 120
consensus_11199#1 ------------------------------------------------------------
consensus_11199#0 CCGCCGCCGCTGCAGGGGCTCCGCCTCGACCTAGGGTTGCTGCTTGGCCGCAAGGCGAGG 180
consensus_11199#1 ------------------------------------------------------------
consensus_11199#0 ACGAGGTCCGGGGGCGGGAAGCTGGACCTGGCGAACTGGCTGAGGTGCTTCGTGGCGCCT 240
consensus_11199#1 ------------------------------------------------------------
consensus_11199#0 CCCCTGCCGCAGCCTTCGGAGGCGGAGGCGAGCGCCGAGGGGAGGGACGCGGGGAACCGC 300
consensus_11199#1 ------------------------------------------------------------
consensus_11199#0 GAGGAGGAGGAGGCCGGGAATGAGGAGGCCGATCACCTCGTCGTCATGGTCAACGGGCTG 360
consensus_11199#1 ------------------------------------------------------------
consensus_11199#0 TACGGGAGGTTTCGGCGGATTGGAAATTTGCTGCAGAGCAGTTTGTGAAGAGGCTGCCGG 420
consensus_11199#1 ------------------------------------------------------------
consensus_11199#0 GGAAAGTCTTCGTGCATCGCAGTCAGTGCAACCATTCAAAGTTAACATATGATGGAGTCG 480
consensus_11199#1 ------------------------------------------------------------
consensus_11199#0 ACTTGATGGGAGAAAGGTTAGCTGAAGAGGTTCGACAAGTTGTTCAGAGGAGAAGTAACC 540
consensus_11199#1 ------------------------------------------------------------
consensus_11199#0 TGCAGAAGATCTCTTTTGTTGCCCATTCACTTGGTGGTTTAGTTACAAGATATGCAATTG 600
consensus_11199#1 ------------------------------------------------------------
consensus_11199#0 GAAAACTGTATGATCCATCAATAAATGAAGAGGCTTCTCTTGATAAGGAAAACTTCTCAA 660
consensus_11199#1 ------------------------------------------------------------
consensus_11199#0 ATGAACTGAGAACATCTGATGGTGGTAAAATAGCTGGTTTGGAGCCAATAAATTTTATTG 720
consensus_11199#1 ------------------------------------------------------------
consensus_11199#0 CAGTTGCTACTCCACACTTGGGATCAAGGTGGAATAAACAACTTCCCTTCCTTTTTGGTG 780
consensus_11199#1 ------------------------------------------------------------
consensus_11199#0 TTCCACTTTTGGAGCGAACTGCTGCAGTAACTGCACATTTTATAGTTGGGAGAACAGGGA 840
consensus_11199#1 ------------------------------------------------------------
consensus_11199#0 AACATTTATTCCTTACAGACTCAGATGATGGGAAGCCCCCACTTCTCCTACGAATGGCTG 900
consensus_11199#1 ------------------------------------------------------------
consensus_11199#0 AAGACTGTGATGATGGAAAATTCATGTCTGCGCTGCGCTCTTTTAAGCGCCGTGTTGCCT 960
consensus_11199#1 ------------------------------------------------------------
consensus_11199#0 ATGCGAATGTAACATATGATCATATAGTTGGCTGGAGAACATCATCAATTCGGCGTCAGC 1020
consensus_11199#1 ---------------ATGATCATATAGTTGGCTGGAGAACATCATCAATTCGGCGTCAGC 45
*********************************************
consensus_11199#0 ACGAATTACCTAAATTGCAGTTAACACCAAGTGATAAAAAGTATCCACATATTATCCATG 1080
consensus_11199#1 ACGAATTCCCTAAATTGCAGTTACCACCAAGTGATAAAAAGTATCCACATATTATCCATG 105
******* *************** ************************************
consensus_11199#0 TTGACAAAGGAAATTCAGAGCATCATCAGCAAGAGGAATCTGTAGAAGCTTCACTTACAG 1140
consensus_11199#1 TTGCCAAAGGAAATTCAGAGCATCATCAGCAAGAGGAATCTGTAGAAGCTTCACTTCCAG 165
*** **************************************************** ***
consensus_11199#0 ATAGCATGGAAGAAGTGATGATCCATGGCCTTACACAAGTTCCCTGGGAACGTGTTGATG 1200
consensus_11199#1 ATAGCATGGAAGAAGTGATGATCCATGCCCTTACACAAGTTCCCTGGGAACGTGTTGATG 225
*************************** ********************************
consensus_11199#0 TATGCTTTCATAAGAGCTGGCTAAGATACAATGCCCACCACAATATCCAGGTTAGGATCC 1260
consensus_11199#1 TATGCTTTCATAAGAGCTGGTTAAGATACAATGCCCCCCCCAATATCCAGGTTAGGATCC 285
******************** *************** ** ********************
consensus_11199#0 ATCCTGTTAATTCAGACGGCGAAGACGTAATCTACCATTTGATAGACAATTTTCTAGTGT 1320
consensus_11199#1 ATCCTGTTAATTCAGACGGGGAAGACGTAATCTCCCATTTGATAGACAATTTTTTAGTGT 345
******************* ************* ******************* ******
consensus_11199#0 AGCTAAATTTCGATGAATTATTGATAAATAACAGCCTTTTATACGGGGGGTTAACTCCAT 1380
consensus_11199#1 AGCTAAATTTCGATGAATTATTGATAAATACCACCCTTTTATACGGGGGGTTAACTCCAT 405
****************************** ** **************************
consensus_11199#0 TGTACCACTCTAGTTAGGTGATGACCCCCGTGGACCAACATGCCTGGTTCATTAGATCAC 1440
consensus_11199#1 TGTCCCACTCTAGTTAGGTGATGACCCCCGTGGACCAACATGCCTGGTTCATTAGATCCC 465
*** ****************************************************** *
consensus_11199#0 ACGTGATGTAAGGTTATCATTTATCGGAGCCTGGGTGCCTCTGATTTGTTGTCTTGTAGT 1500
consensus_11199#1 ACGTGATGTAAGGTTATCATTTATCGGAGCCTGGGTGCCTCTGATTTGTTGTCTTGTAGT 525
************************************************************
consensus_11199#0 GTACCTGTGTAAGGATAAGTGTTAGATTGTTAATAGTGTAAATGTCGGTGTAATATTTTT 1560
consensus_11199#1 GTAACTGTGTAAGGATAATTGTTAGATTGTTAATAGTGTAAATGTCGGTGTAATATTTTT 585
*** ************** *****************************************
consensus_11199#0 TGTACATATAAATTTTATAAACTTGACTCCCTCTGGTTGTATAGATCCATCAATAAAT-- 1618
consensus_11199#1 TGTACATATAAATTTTATAAACTTGACTCCCTCTGGTTGTATATGCAGTTCTTTGAAGGA 645
******************************************* ** * **
consensus_11199#0 ------
consensus_11199#1 AGATGC 651
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||