These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11199#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1618 fasta sequence [GCCTCGCCTCTCCGCCGCGGCCGCGGCCGGCGGCCCGCCTCCGCGATGGGCCAGGCCCCGAGCTCGCCGCCGGGGCCGGGGCGCAGCCGCAGCTGCGGAATCTCGAGATGGCCGCCGCCGCCGCCGCCGCTGCAGGGGCTCCGCCTCGACCTAGGGTTGCTGCTTGGCCGCAAGGCGAGGACGAGGTCCGGGGGCGGGAAGCTGGACCTGGCGAACTGGCTGAGGTGCTTCGTGGCGCCTCCCCTGCCGCAGCCTTCGGAGGCGGAGGCGAGCGCCGAGGGGAGGGACGCGGGGAACCGCGAGGAGGAGGAGGCCGGGAATGAGGAGGCCGATCACCTCGTCGTCATGGTCAACGGGCTGTACGGGAGGTTTCGGCGGATTGGAAATTTGCTGCAGAGCAGTTTGTGAAGAGGCTGCCGGGGAAAGTCTTCGTGCATCGCAGTCAGTGCAACCATTCAAAGTTAACATATGATGGAGTCGACTTGATGGGAGAAAGGTTAGCTGAAGAGGTTCGACAAGTTGTTCAGAGGAGAAGTAACCTGCAGAAGATCTCTTTTGTTGCCCATTCACTTGGTGGTTTAGTTACAAGATATGCAATTGGAAAACTGTATGATCCATCAATAAATGAAGAGGCTTCTCTTGATAAGGAAAACTTCTCAAATGAACTGAGAACATCTGATGGTGGTAAAATAGCTGGTTTGGAGCCAATAAATTTTATTGCAGTTGCTACTCCACACTTGGGATCAAGGTGGAATAAACAACTTCCCTTCCTTTTTGGTGTTCCACTTTTGGAGCGAACTGCTGCAGTAACTGCACATTTTATAGTTGGGAGAACAGGGAAACATTTATTCCTTACAGACTCAGATGATGGGAAGCCCCCACTTCTCCTACGAATGGCTGAAGACTGTGATGATGGAAAATTCATGTCTGCGCTGCGCTCTTTTAAGCGCCGTGTTGCCTATGCGAATGTAACATATGATCATATAGTTGGCTGGAGAACATCATCAATTCGGCGTCAGCACGAATTACCTAAATTGCAGTTAACACCAAGTGATAAAAAGTATCCACATATTATCCATGTTGACAAAGGAAATTCAGAGCATCATCAGCAAGAGGAATCTGTAGAAGCTTCACTTACAGATAGCATGGAAGAAGTGATGATCCATGGCCTTACACAAGTTCCCTGGGAACGTGTTGATGTATGCTTTCATAAGAGCTGGCTAAGATACAATGCCCACCACAATATCCAGGTTAGGATCCATCCTGTTAATTCAGA-CGGCGAAGACGTAATCTACCATTTGATAGACAA-TTTTCTAGTGTAGCTAAATTTCGATGAATTATT-GATAAATAACAGCCTTTTATA-CGGGGGGTTAACTCCATTGTACCACTCTAGTTAGGTGATGACCCCCGTGGACCAACAT-GCCTGGTTCATTAGATCACACGTGATGTAAGGTTATCATTTATCGGAGCCTGGGTGCCTCTGATTTGTTGTCTTGTAGTGTACCTGTGTAAGGATAAGTGTTAGATTGTTAATAGTGTAAATGTCGGTGTAATATTTTTTGTACATATAAATTTTATAAACTTGACTCCCTCTGGTTGTATAGATCCATCAATAAAT] [+] EMBL CB634792 [GCCTCGCCTCTCCGCCGCGGCCGCGGCCGGCGGCCCGCCTCCGCGATGGGCCAGGCCCCGAGCTCGCCGCCGGGGCCGGGGCGCAGCCGCAGCTGCGGAATCTCGAGATGGCCGCCGCCGCCGCCGCCGCTGCAGGGGCTCCGCCTCGACCTAGGGTTGCTGCTTGGCCGCAAGGCGAGGACGAGGTCCGGGGGCGGGAAGCTGGACCTGGCGAACTGGCTGAGGTGCTTCGTGGCGCCTCCCCTGCCGCAGCCTTCGGAGGCGGAGGCGAGCGCCGAGGGGAGGGACGCGGGGAACCGCGAGGAGGAGGAGGCCGGGAATGAGGAGGCCGATCACCTCGTCGTCATGGTCAACGGGCTGTACGGGAGGTTTCGGCGGATTGGAAATTTGCTGCAGAGCAGTTTGTGAAGAGGCTGCCGGGGAAAGTCTTCGTGCATCGCAGTCAGTGCAACCATTCAAAGTTAACATATGATGGAGTCGACTTGATGGGAGAAAGGTTAGCTGAAGAGGTTCGACAAGTTGTTCAGAGGAGAAGTAACCTGCAGAAGATCTCTTTTGTTGCCCATTCACTTGGTGGTTTAGTTACAAGATATGCAATTGGAAAACTGTATGATCCATCAATAAATGAAG ] [+] EMBL CB657226 [ GGGGCGGGAAGCTGGACCTGGCGAACTGGCTGAGGTGCTTCGTGGCGCCTCCCCTGCCGCAGCCTTCGGAGGCGGAGGCGAGCGCCGAGGGGAGGGACGCGGGGAACCGCGAGGAGGAGGAGGCCGGGAATGAGGAGGCCGATCACCTCGTCGTCATGGTCAACGGGCTGTACGGGAG TTCGGCGGATTGGAAATTTGCTGCAGAGCAGTTTGTGAAGAGGCTGCCGGGGAAAGTCTTCGTGCATCGCAGTCAGTGCAACCATTCAAAGTTAACATATGATGGAGTCGACTTGATGGGAGAAAGGTTAGCTGAAGAGGTTCGACAAGTTGTTCAGAGGAGAAGTAACCTGCAGAAGATCTCTTTTGTTGCCCATTCACTTGGTGGTTTAGTTACAAGATATGCAATTGGAAAACTGTATGATCCATCAATAAATGAAG ] [+] EMBL CA767131 [ aagggGGAGAAGTAACCTGCAGAAGATCTCTTTTGTTGCCCATTCACTTGGTGGTTTAGTTACAAGATATGCAATTGGAAAACTGTATGATCCATCAATAAATGAAGAGGCTTCTCTTGATAAGGAAAACTTCTCAAATGAACTGAGAACATCTGATGGTGGTAAAATAGCTGGTTTGGAGCCAATAAATTTTATTGCAGTTGCTACTCCACACTTGGGATCAAGGTGGAATAAACAACTTCCCTTCCTTTTTGGTGTTCCACTTTTGGAGCGAACTGCTGCAGTAACTGCACATTTTATAGTTGGGAGAACAGGGAAACATTTATTCCTTACAGACTCAGATGATGGGAAGCCTCCACTTCTCCTACGAATGGCTGAAGACTGTGATGATGGAAAATTCATGTCTGCGCTGCGCTCTTTTAAGCGCCGTGTTGCCTATGCGAATGTAACATATGATCATATAGTTGGCTGGAGAACATCATCAATTCGGCGTCAGCACGAATTACCTAAATTGCAGTTAACACCAAGTGATAAAAAGTATCCACATATTATCCATGTTGACAAAGGAAATTCAGAGCATCATCAGCAAGAGGAATCTGTAGAAGCTTCACTTACAGATAGCATGGAAGAAGTGATGATCCATGGCCTTACACAAGNTNCCTGGGAACGNGNTGATGNATGCTTTCATAAGAGCTGGCTAAGATACAATGNCCACCACAATATNCAGGNTAGGATCCATNCTGGTAATTCANACCGGNGAANACGTAATCTACCATTTGATAGACAANTTTTNTAGGGNAGCTNAATTTCGATGNANTATTGGATAAANAACAGCCTTTT TACCGGGGGGGTAACTNCATTGGNCCACTCTAGTTAGGGGATGACCCCCGGGGNCC ACATGGCCNGG ] [+] EMBL CB668899 [ GAACATCTGATGGTGGTAAAATAGCTGGTTTGGAGCCAATAAATTTTATTGCAGTTGCTACTCCACACTTGGGATCAAGGTGGAATAAACAACTTCCCTTCCTTTTTGGTGTTCCACTTTTGGAGCGAACTGCTGCAGTAACTGCACATTTTATAGGTGGGAGAACAGGGAAACATTTATTCCTTACAGACTCAGATGATGGGAAGCCCCCACTTCTCCTACGAATGGCTGAAGACTGTGATGATGGAAAATTCATGTCTGCGTTGCGCTCTTTTAAGCGCCGTGGTGCCTATGCGAATGTAACATATGATCATATAGTTGGCTGGAGAACATCATCAATTCGGCGTCAGCACGAATTACCTAAATTGCAGTTAACACCAAGTGATAAAAAGTATCCACATATTATCCATGTTGACAAAGGAAATTCAGAGCATCATCAGCAAGAGGAATCTGTAGAAGCTTCACTTACAGATAGCATGGAAGAAGTGATGATCCATGGCCTTACACAAGTTCCCTGGGAACGTGTTGATGTATGCTTTCATAAGAGCTGGCTAAGAT ] [-] EMBL CB634793 [ AACTGCACATTTTATAGTTGGGAGAACAGGGAAACATTTATTCCTTACAGACTCAGATGATGGGAAGCCCCCACTTCTCCTACGAATGGCTGAAGACTGTGATGATGGAAAATTCATGTCTGCGCTGCGCTCTTTTAAGCGCCGTGTTGCCTATGCGAATGTAACATATGATCATATAGTTGGCTGGAGAACATCATCAATTCGGCGTCAGCACGAATTACCTAAATTGCAGTTAACACCAAGTGATAAAAAGTATCCACATATTATCCATGTTGACAAAGGAAATTCAGAGCATCATCAGCAAGAGGAATCTGTAGAAGCTTCACTTACAGATAGCATGGAAGAAGTGATGATCCATGGCCTTACACAAGTTCCCTGGGAACGTGTTGATGTATGCTTTCATAAGAGCTGGCTAAGATACAATGCCCACCACAATATCCAGGTTAGGATCCATCCTGTTAATTCAGA CGGCGAAGACGTAATCTACCATTTGATAGACAA TTTTCTAGTGTAGCTAAATTTCGATGAATTATT GATAAATAACAGCCTTTTATA CGGTGGGTTAACTCCATTGTACCACTCTAGTTAGGTGATGACACCCGTGGACCAACAT GCCTGGTTCATTAGATCACACGTGATGTAAGGTTATCATTTATCGGAGCCTGGGTGCCTCTGATTTGTTGTCTTGTAGTGTAACTGTGTAAGGATAAGTGTTAGATTGTTAATAGTGTAAATGTCGGTGTAAT ] [-] EMBL CB635758 [ CGTGTTCCCTATGCGAATGTAACATATGATCATATAGTTGGCTGGAGAACATCATCAATTCGGCGTCAGCACGAATTACCTAAATTCCAGTTAACACCAAGTGATAAAAAGTATCCACATATTATCCATGTTGACAAAGGAAATTCAGACCATCATCACCAAGAGGAATCTGTAGAAGCTTCACTTACAGATACCATGGAAGAAGTGATGATCCATGCCCTTACACAAGTTCCCTGGGAACGTGTTGATGTATCCTTTCATAAGAGCTGGCTAAGATACAATGCCCCCCCCAATATCCAGGTTAGGATCCATCCTGTTAATTCAGA CGGCGAAGACGTAATCTCCCATTTGATAGACAA TTTTCTAGTGTAGCTAAATTTCGATGAATTATT GATAAATAACACCCTTTTATA CGGTGGGTTAACTCCATTGTACCACTCTAGTTAGGTGATGACACCCGTGGACCAACAT GCCTGGTTCATTAGATCACACGTGATGTAAGGTTATCATTTATCGGAGCCTGGGTCCCTCTGATTTGTTGTCTTGTAGTGTACCTGTGTAAGGATAAGTGTTAGATTGTTATTTTTGGGAATGTCGGTGTAATATTTTTTGTACATATAAATTTTATAAACTTGACTCCCTC ] [-] EMBL CB635757 [ CGTGTTGCCTATGCGAATGTAACATATGATCATATAGTTGGCTGGAGAACATCATCAATTCGGGGTCAGCACGAATTCCCTAAATTGCAGTTAACCCCAAGTGATAAAAAGTATCCACATATTATCCATGTTGACAAAGGAAATTCAGAGCATCATCAGCAAGAGGAATCTGTAGAAGCTTCACTTACAGATAGCATGGAAGAAGTGATGATCCATGGCCTTACACAAGTTCCCTGGGAACGTGTTGATGTATGCTTTCATAAGAGCTGGCTAAGATACAATGCCCCCCCCAATATCCAGGTTAGGATCCATCCTGTTAATTCAGA CGGCGAAGACGTAATCTACCATTTGATAGCCAA TTTTTTAGTGTAGCTAAATTTCGATGAATTATT GATAAATAACAGCCTTTTATA CGGGGGGTTAACTCCATTGTACCACTCTAGTTAGGTGATGACCCCCGTGGACCAACAT GCCTGGTTCATTAGATCCCACGTGATGTAAGGTTATCATTTATCGGAGCCTGGGTGCCTCTGATTTGTTGTCTTGTAGTGTACCGGTGTAAGGATAAGTGTTAGATTGTTAATAGTGTAAATGTCGGTGTAATATTTTTTGTACATATAAATTTTATAAACTTGACTGCCTCTGGTTGTATAGATCCATCAATAAAT] consensusID : consensus_11199#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 651 fasta sequence [ATGATCATATAGTTGGCTGGAGAACATCATCAATTCGGCGTCAGCACGAATTCCCTAAATTGCAGTTACCACCAAGTGATAAAAAGTATCCACATATTATCCATGTTGCCAAAGGAAATTCAGAGCATCATCAGCAAGAGGAATCTGTAGAAGCTTCACTTCCAGATAGCATGGAAGAAGTGATGATCCATGCCCTTACACAAGTTCCCTGGGAACGTGTTGATGTATGCTTTCATAAGAGCTGGTTAAGATACAATGCCCCCCCCAATATCCAGGTTAGGATCCATCCTGTTAATTCAGACGGGGAAGACGTAATCTCCCATTTGATAGACAATTTTTTAGTGTAGCTAAATTTCGATGAATTATTGATAAATACCACCCTTTTATACGGGGGGTTAACTCCATTGTCCCACTCTAGTTAGGTGATGACCCCCGTGGACCAACATGCCTGGTTCATTAGATCCCACGTGATGTAAGGTTATCATTTATCGGAGCCTGGGTGCCTCTGATTTGTTGTCTTGTAGTGTAACTGTGTAAGGATAATTGTTAGATTGTTAATAGTGTAAATGTCGGTGTAATATTTTTTGTACATATAAATTTTATAAACTTGACTCCCTCTGGTTGTATATGCAGTTCTTTGAAGGAAGATGC] [-] EMBL CB668900 [ATGATCATATAGTTGGCTGGAGAACATCATCAATTCGGCGTCAGCACGAATTCCCTAAATTGCAGTTACCACCAAGTGATAAAAAGTATCCACATATTATCCATGTTGCCAAAGGAAATTCAGAGCATCATCAGCAAGAGGAATCTGTAGAAGCTTCACTTCCAGATAGCATGGAAGAAGTGATGATCCATGCCCTTACACAAGTTCCCTGGGAACGTGTTGATGTATGCTTTCATAAGAGCTGGTTAAGATACAATGCCCCCCCCAATATCCAGGTTAGGATCCATCCTGTTAATTCAGACGGGGAAGACGTAATCTCCCATTTGATAGACAATTTTTTAGTGTAGCTAAATTTCGATGAATTATTGATAAATACCACCCTTTTATACGGGGGGTTAACTCCATTGTCCCACTCTAGTTAGGTGATGACCCCCGTGGACCAACATGCCTGGTTCATTAGATCCCACGTGATGTAAGGTTATCATTTATCGGAGCCTGGGTGCCTCTGATTTGTTGTCTTGTAGTGTAACTGTGTAAGGATAATTGTTAGATTGTTAATAGTGTAAATGTCGGTGTAATATTTTTTGTACATATAAATTTTATAAACTTGACTCCCTCTGGTTGTATATGCAGTTCTTTGAAGGAAGATGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_11199#0 GCCTCGCCTCTCCGCCGCGGCCGCGGCCGGCGGCCCGCCTCCGCGATGGGCCAGGCCCCG 60 consensus_11199#1 ------------------------------------------------------------ consensus_11199#0 AGCTCGCCGCCGGGGCCGGGGCGCAGCCGCAGCTGCGGAATCTCGAGATGGCCGCCGCCG 120 consensus_11199#1 ------------------------------------------------------------ consensus_11199#0 CCGCCGCCGCTGCAGGGGCTCCGCCTCGACCTAGGGTTGCTGCTTGGCCGCAAGGCGAGG 180 consensus_11199#1 ------------------------------------------------------------ consensus_11199#0 ACGAGGTCCGGGGGCGGGAAGCTGGACCTGGCGAACTGGCTGAGGTGCTTCGTGGCGCCT 240 consensus_11199#1 ------------------------------------------------------------ consensus_11199#0 CCCCTGCCGCAGCCTTCGGAGGCGGAGGCGAGCGCCGAGGGGAGGGACGCGGGGAACCGC 300 consensus_11199#1 ------------------------------------------------------------ consensus_11199#0 GAGGAGGAGGAGGCCGGGAATGAGGAGGCCGATCACCTCGTCGTCATGGTCAACGGGCTG 360 consensus_11199#1 ------------------------------------------------------------ consensus_11199#0 TACGGGAGGTTTCGGCGGATTGGAAATTTGCTGCAGAGCAGTTTGTGAAGAGGCTGCCGG 420 consensus_11199#1 ------------------------------------------------------------ consensus_11199#0 GGAAAGTCTTCGTGCATCGCAGTCAGTGCAACCATTCAAAGTTAACATATGATGGAGTCG 480 consensus_11199#1 ------------------------------------------------------------ consensus_11199#0 ACTTGATGGGAGAAAGGTTAGCTGAAGAGGTTCGACAAGTTGTTCAGAGGAGAAGTAACC 540 consensus_11199#1 ------------------------------------------------------------ consensus_11199#0 TGCAGAAGATCTCTTTTGTTGCCCATTCACTTGGTGGTTTAGTTACAAGATATGCAATTG 600 consensus_11199#1 ------------------------------------------------------------ consensus_11199#0 GAAAACTGTATGATCCATCAATAAATGAAGAGGCTTCTCTTGATAAGGAAAACTTCTCAA 660 consensus_11199#1 ------------------------------------------------------------ consensus_11199#0 ATGAACTGAGAACATCTGATGGTGGTAAAATAGCTGGTTTGGAGCCAATAAATTTTATTG 720 consensus_11199#1 ------------------------------------------------------------ consensus_11199#0 CAGTTGCTACTCCACACTTGGGATCAAGGTGGAATAAACAACTTCCCTTCCTTTTTGGTG 780 consensus_11199#1 ------------------------------------------------------------ consensus_11199#0 TTCCACTTTTGGAGCGAACTGCTGCAGTAACTGCACATTTTATAGTTGGGAGAACAGGGA 840 consensus_11199#1 ------------------------------------------------------------ consensus_11199#0 AACATTTATTCCTTACAGACTCAGATGATGGGAAGCCCCCACTTCTCCTACGAATGGCTG 900 consensus_11199#1 ------------------------------------------------------------ consensus_11199#0 AAGACTGTGATGATGGAAAATTCATGTCTGCGCTGCGCTCTTTTAAGCGCCGTGTTGCCT 960 consensus_11199#1 ------------------------------------------------------------ consensus_11199#0 ATGCGAATGTAACATATGATCATATAGTTGGCTGGAGAACATCATCAATTCGGCGTCAGC 1020 consensus_11199#1 ---------------ATGATCATATAGTTGGCTGGAGAACATCATCAATTCGGCGTCAGC 45 ********************************************* consensus_11199#0 ACGAATTACCTAAATTGCAGTTAACACCAAGTGATAAAAAGTATCCACATATTATCCATG 1080 consensus_11199#1 ACGAATTCCCTAAATTGCAGTTACCACCAAGTGATAAAAAGTATCCACATATTATCCATG 105 ******* *************** ************************************ consensus_11199#0 TTGACAAAGGAAATTCAGAGCATCATCAGCAAGAGGAATCTGTAGAAGCTTCACTTACAG 1140 consensus_11199#1 TTGCCAAAGGAAATTCAGAGCATCATCAGCAAGAGGAATCTGTAGAAGCTTCACTTCCAG 165 *** **************************************************** *** consensus_11199#0 ATAGCATGGAAGAAGTGATGATCCATGGCCTTACACAAGTTCCCTGGGAACGTGTTGATG 1200 consensus_11199#1 ATAGCATGGAAGAAGTGATGATCCATGCCCTTACACAAGTTCCCTGGGAACGTGTTGATG 225 *************************** ******************************** consensus_11199#0 TATGCTTTCATAAGAGCTGGCTAAGATACAATGCCCACCACAATATCCAGGTTAGGATCC 1260 consensus_11199#1 TATGCTTTCATAAGAGCTGGTTAAGATACAATGCCCCCCCCAATATCCAGGTTAGGATCC 285 ******************** *************** ** ******************** consensus_11199#0 ATCCTGTTAATTCAGACGGCGAAGACGTAATCTACCATTTGATAGACAATTTTCTAGTGT 1320 consensus_11199#1 ATCCTGTTAATTCAGACGGGGAAGACGTAATCTCCCATTTGATAGACAATTTTTTAGTGT 345 ******************* ************* ******************* ****** consensus_11199#0 AGCTAAATTTCGATGAATTATTGATAAATAACAGCCTTTTATACGGGGGGTTAACTCCAT 1380 consensus_11199#1 AGCTAAATTTCGATGAATTATTGATAAATACCACCCTTTTATACGGGGGGTTAACTCCAT 405 ****************************** ** ************************** consensus_11199#0 TGTACCACTCTAGTTAGGTGATGACCCCCGTGGACCAACATGCCTGGTTCATTAGATCAC 1440 consensus_11199#1 TGTCCCACTCTAGTTAGGTGATGACCCCCGTGGACCAACATGCCTGGTTCATTAGATCCC 465 *** ****************************************************** * consensus_11199#0 ACGTGATGTAAGGTTATCATTTATCGGAGCCTGGGTGCCTCTGATTTGTTGTCTTGTAGT 1500 consensus_11199#1 ACGTGATGTAAGGTTATCATTTATCGGAGCCTGGGTGCCTCTGATTTGTTGTCTTGTAGT 525 ************************************************************ consensus_11199#0 GTACCTGTGTAAGGATAAGTGTTAGATTGTTAATAGTGTAAATGTCGGTGTAATATTTTT 1560 consensus_11199#1 GTAACTGTGTAAGGATAATTGTTAGATTGTTAATAGTGTAAATGTCGGTGTAATATTTTT 585 *** ************** ***************************************** consensus_11199#0 TGTACATATAAATTTTATAAACTTGACTCCCTCTGGTTGTATAGATCCATCAATAAAT-- 1618 consensus_11199#1 TGTACATATAAATTTTATAAACTTGACTCCCTCTGGTTGTATATGCAGTTCTTTGAAGGA 645 ******************************************* ** * ** consensus_11199#0 ------ consensus_11199#1 AGATGC 651 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||