These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11215#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 976 fasta sequence [CTCCTCCCCGTCGTCGACCTCGTGCTCGGCTGCCTGGAGTCTCCCGGTGGCGACGTCGGCCGGCAGGAGGGGGCTGCTCGCGCTGGGCGCGGGGTTCCTGGCTTCCCCTGGGCTTCTGTGCCCCGCCGGCGACGCCGGAGCGACGCGCATCGAGTACTACGCGACGGTGGGGGACAAGCTGTGCGACATGAACGTCGTCAAGTCGGGGCTCGGCTACTGCGACGTCGAAGTCGGCACCGGCGCCCAGCCCCCGCGCGGCCAGCTCATAAATGTACACTACACTGCAAGATTTACTGACGGGATAGTGTTCGACAGCACCTACAAGCGAGGACGGCCACT-GACAATGCGCCTTGGCGCAG-GCAAGATCCTCCGAGGGCTTGAACAGGGAATCAGTGGTGGCGGTGGTGTGCCACCCATGCTCGTTGGTG-GAAAGCGCAAGCTTATGATACCTGCAACTTTGGCATACGGACCTGAACCAGCAGGTTGCTTCTCAGGAGACTGTAATATTCCCGGCAACACCACACTCCTATACGACATCTTCCTGGTTGGATTTTACAAGTGAGCATATGATGAAAAGGAATATGCATGACTTGAACAGACTAGGTGCAAACAAGATTTTCGAGTAAATTTTGGCGTTTCATACAAGAGGCGGGACTACGGACAGATGAAGAGAAAGGGTGCGACATGCCTAAGCCCAGACGCCGAAAGCAAATGCGTCACCGGAGCTCCTTGGGTCTCCAATACGCAGAGTACTACATTTGCAATCTGTACCAAGAAGTGAAAGGATATATAACAAACCGGTCCTCTGATATACTATCAAATTGGTCTTATGTTTTCTAGAGAAGAAAAGTCTTGTGTTTGTGTAAGTATAACGTTGTAAAGACATGTCTCATTATTCATACTGTCATTGGTACAGCCAAACACAACAAAAATTCCCATCCTTTGTGGCAAGTCCTAAAAAAAAAAAAAAAAAAAA] [+] EMBL AK060441 [CTCCTCCCCGTCGTCGACCTCGTGCTCGGCTGCCTGGAGTCTCCCGGTGGCGACGTCGGCCGGCAGGAGGGGGCTGCTCGCGCTGGGCGCGGGGTTCCTGGCTTCCCCTGGGCTTCTGTGCCCCGCCGGCGACGCCGGAGCGACGCGCATCGAGTACTACGCGACGGTGGGGGACAAGCTGTGCGACATGAACGTCGTCAAGTCGGGGCTCGGCTACTGCGACGTCGAAGTCGGCACCGGCGCCCAGCCCCCGCGCGGCCAGCTCATAAATGTACACTACACTGCAAGATTTACTGACGGGATAGTGTTCGACAGCACCTACAAGCGAGGACGGCCACT GACAATGCGCCTTGGCGCAG GCAAGATCCTCCGAGGGCTTGAACAGGGAATCAGTGGTGGCGGTGGTGTGCCACCCATGCTCGTTGGTG GAAAGCGCAAGCTTATGATACCTGCAACTTTGGCATACGGACCTGAACCAGCAGGTTGCTTCTCAGGAGACTGTAATATTCCCGGCAACACCACACTCCTATACGACATCTTCCTGGTTGGATTTTACAAGTGAGCATATGATGAAAAGGAATATGCATGACTTGAACAGACTAGGTGCAAACAAGATTTTCGAGTAAATTTTGGCGTTTCATACAAGAGGCGGGACTACGGACAGATGAAGAGAAAGGGTGCGACATGCCTAAGCCCAGACGCCGAAAGCAAATGCGTCACCGGAGCTCCTTGGGTCTCCAATACGCAGAGTACTACATTTGCAATCTGTACCAAGAAGTGAAAGGATATATAACAAACCGGTCCTCTGATATACTATCAAATTGGTCTTATGTTTTCTAGAGAAGAAAAGTCTTGTGTTTGTGTAAGTATAACGTTGTAAAGACATGTCTCATTATTCATACTGTCATTGGTACAGCCAAACACAACAAAAATTCCCAT ] [+] EMBL AK072946 [CTCCTCCCCGTCGTCGACCTCGTGCTCGGCTGCCTGGAGTCTCCCGGTGGCGACGTCGGCCGGCAGGAGGGGGCTGCTCGCGCTGGGCGCGGGGTTCCTGGCTTCCCCTGGGCTTCTGTGCCCCGCCGGCGACGCCGGAGCGACGCGCATCGAGTACTACGCGACGGTGGGGGACAAGCTGTGCGACATGAACGTCGTCAAGTCGGGGCTCGGCTACTGCGACGTCGAAGTCGGCACCGGCGCCCAGCCCCCGCGCGGCCAGCTCATAAATGTACACTACACTGCAAGATTTACTGACGGGATAGTGTTCGACAGCACCTACAAGCGAGGACGGCCACT GACAATGCGCCTTGGCGCAG GCAAGATCCTCCGAGGGCTTGAACAGGGAATCAGTGGTGGCGGTGGTGTGCCACCCATGCTCGTTGGTG GAAAGCGCAAGCTTATGATACCTGCAACTTTGGCATACGGACCTGAACCAGCAGGTTGCTTCTCAGGAGACTGTAATATTCCCGGCAACACCACACTCCTATACGACATCTTCCTGGTTGGATTTTACAAGTGAGCATATGATGAAAAGGAATATGCATGACTTGAACAGACTAGGTGCAAACAAGATTTTCGAGTAAATTTTGGCGTTTCATACAAGAGGCGGGACTACGGACAGATGAAGAGAAAGGGTGCGACATGCCTAAGCCCAGACGCCGAAGGCAAATGCGTCACCGGAGCTCCTTGGGTCTCCAATACGCAGAGTACTACATTTGCAATCTGTACCAAGAAGTGAAAGGATATATAACAAACCGGTCCTCTGATATACTATCAAATTGGTCTTATGTTTTCTAGAGAAGAAAAGTCTTGTGTTTGTGTAAGTATAACGTTGTAAAGACATGTCTCATTATTCATACTGTCATTGGTAGAGCCAAACACAACAAA ] [+] EMBL AK061027 [CTCCTCCCCGTCGTCGACCTCGTGCTCGGCTGCCTGGAGTCTCCCGGTGGCGACGTCGGCCGGCAGGAGGGGGCTGCTCGCGCTGGGCGCGGGGTTCCTGGCTTCCCCTGGGCTTCTGTGCCCCGCCGGCGACGCCGGAGCGACGCGCATCGAGTACTACGCGACGGTGGGGGACAAGCTGTGCGACATGAACGTCGTCAAGTCGGGGCTCGGCTACTGCGACGTCGAAGTCGGCACCGGCGCCCAGCCCCCGCGCGGCCAGCTCATAAATGTACACTACACTGCAAGATTTACTGACGGGATAGTGTTCGACAGCACCTACAAGCGAGGACGGCCACT GACAATGCGCCTTGGCGCAG GCAAGATCCTCCGAGGGCTTGAACAGGGAATCAGTGGTGGCGGTGGTGTGCCACCCATGCTCGTTGGTG GAAAGCGCAAGCTTATGATACCTGCAACTTTGGCATACGGACCTGAACCAGCAGGTTGCTTCTCAGGAGACTGTAATATTCCCGGCAACACCACACTCCTATACGACATCTTCCTGGTTGGATTTTACAAGTGAGCATATGATGAAAAGGAATATGCATGACTTGAACAGACTAGGTGCAAACAAGATTTTCGAGTAAATTTTGGCGTTTCATACAAGAGGCGGGACTACGGACAGATGAAGAGAAAGGGTGCGACATGCCTAAGCCCAGACGCCGAAAGCAAATGCGTCACCGGAGCTCCTTGGGTCTCCAATACGCAGAGTACTACATTTGCAATCTGTACCAAGAAGTGAAAGGATATATAACAAACCGGTCCTCTGATATACTATCAAATTGGTCTTATGTTTTCTAGAGAAGAAAAGTCTTGTGTTTGTGTAAGTATAACGTTGTAAAGACATGTCTCATTATTCATACTGTCATTGGTACAGC ] [+] EMBL AK104401 [CTCCTCCCCGTCGTCGACCTCGTGCTCGGCTGCCTGGAGTCTCCCGGTGGCGACGTCGGCCGGCAGGAGGGGGCTGCTCGCGCTGGGCGCGGGGTTCCTGGCTTCCCCTGGGCTTCTGTGCCCCGCCGGCGACGCCGGAGCGACGCGCATCGAGTACTACGCGACGGTGGGGGACAAGCTGTGCGACATGAACGTCGTCAAGTCGGGGCTCGGCTACTGCGACGTCGAAGTCGGCACCGGCGCCCAGCCCCCGCGCGGCCAGCTCATAAATGTACACTACACTGCAAGATTTACTGACGGGATAGTGTTCGACAGCACCTACAAGCGAGGACGGCCACT GACAATGCGCCTTGGCGCAG GCAAGATCCTCCGAGGGCTTGAACAGGGAATCAGTGGTGGCGGTGGTGTGCCACCCATGCTCGTTGGTG GAAAGCGCAAGCTTATGATACCTGCAACTTTGGCATACGGACCTGAACCAGCAGGTTGCTTCTCAGGAGACTGTAATATTCCCGGCAACACCACACTCCTATACGACATCTTCCTGGTTGGATTTTACAAGTGAGCATATGATGAAAAGGAATATGCATGACTTGAGCAGACTAGGTGCAAACAAGATTTTCGAGTAAATTTTGGCGTTTCATACAAGAGGCGGGACTACGGACAGATGAAGAGAAAGGGTGCGACATGCCTAAGCCCAGACGCCGAAAGCAAATGCGTCACCGGAGCTCCTTGGGTCTCCAATACGCAGAGTACTACATTTGCAATCTGTACCAAGAAGTGAAAGGATATATAACAAACCGGTCCTCTGATATACTATCAAATTGGTCTTATGTTTTCTAGAGAAGAAAAGTCTTGTGTTTGTGTAAGTATAACGTTGTAAAGACATGTCTCATTATTCATACTGTCATTGGTAC ] [+] EMBL CA754530 [CTCCTCCCCGTCGTCGACCTCGTGCTCGGCTGCCTGGAGTCTCCCGGTGGCGACGTCGGCCGGCAGGAGGGGGCTGCTCGCGCTGGGCGCGGGGTTCCTGGCTTCCCCTGGGCTTCTGTGCCCCGGCGGCGACGCCGGAGCGACGCGCATCGAGTACTACGCGACGGTGGGGGACAAGCTGTGCGACATGAACGTCGTCAAGTCGGGGATCGGTTACTGCGACGTCGAAGTCGGCACCGGCGCCCAGCCCCCGCGCGGACAGCTCATAAATGTACACTACACTGCAAGATTTACTGACGGGATAGTGTTCGACAGCACCTACAAGCGAGGACGGGCACTAGAC ATGCGCCTTGGCGCAA GCAAGATCCTCCGAGGGCTTGTACAGGGAATCACTGGTGGCGGTGGTGTGCCACCCATGCTCGTTGGTGCGAA ] [+] EMBL OSS14958A [ ACGTCGTCAAGTCGGGGCTCGGCTACTGCGACGTCGAAGTCGGCACCGGCGCCCAGCCNCCGCGCGGCCAGCTCATAAATGTACACTACACTGCAAGATTTACTGACGGGATAGTGTTCGACAGCACCTACAAGCGAGGACGGCCACT GACAATGCGCCTTGGCG AGNGCAAGATCCTCCGAGGGCTTGAACAGGGAATCAGTGGTGTCNNTGGcctgt ] [-] EMBL CF325422 [ ACCACACTCCTATACGACATCTTCCTGGTTGGATTTTACAAGTGAGCATATGATGAAAAGGAATATGCATGACTTGAACAGACTAGGTGCAAACAAGATTTTCGAGTAAATTTTGGCGTTTCATACAAGAGGCGGGACTACGGACAGATGAAGAGAAAGGGTGCGACATGCCTAAGCCCAGACGCCGAAAGCAAATGCGTCACCGGAGCTCCTTGGGTCTCCAATACGCAGAGTACTACATTTGCAATCTGTACCAAGAAGTGAAAGGATATATAACAAACCGGTCCTCTGATATACTATCAAATTGGTCTTATGTTTTCTAGAGAAGAAAAGTCTTGTGTTTGTGTAAGTATAACGTTGTAAAGACATGTCTCATTATTCATACTGTCATTGGTACAGCCAAACACAACAAAAATTCCCATCCTTTGTGGCAAGTCCTAAAAAAAAAAAAAAAAAAAA] consensusID : consensus_11215#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 270 fasta sequence [GCGTCACCGGAGCTCCTTGGGTCTCCAATACGCAGAGTACTACATTTGCAATCTGTACCAAGAAGTGAAAGGATATATAACAAACCGGTCCTCTGATATACTATCAAATTGGTCTTATGTTTTCTAGAGAAGAAAAGTCTTGTGTTTGTGTAAGTATAACGTTGTAAAGACATGTCTCATTATTCATACTGTCATTGGTACAGCCAAACACAACAAAAATTCCCATCCTTTGTGGCAAGTCCTAACTAAATGAAGTTGAACTCTGACTGA] [+] EMBL AU075519 [GCGTCACCGGAGCTCCTTGGGTCTCCAATACGCAGAGTACTACATTTGCAATCTGTACCAAGAAGTGAAAGGATATATAACAAACCGGTCCTCTGATATACTATCAAATTGGTCTTATGTTTTCTAGAGAAGAAAAGTCTTGTGTTTGTGTAAGTATAACGTTGTAAAGACATGTCTCATTATTCATACTGTCATTGGTACAGCCAAACACAACAAAAATTCCCATCCTTTGTGGCAAGTCCTAACTAAATGAAGTTGAACTCTGACTGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_11215#0 CTCCTCCCCGTCGTCGACCTCGTGCTCGGCTGCCTGGAGTCTCCCGGTGGCGACGTCGGC 60 consensus_11215#1 ------------------------------------------------------------ consensus_11215#0 CGGCAGGAGGGGGCTGCTCGCGCTGGGCGCGGGGTTCCTGGCTTCCCCTGGGCTTCTGTG 120 consensus_11215#1 ------------------------------------------------------------ consensus_11215#0 CCCCGCCGGCGACGCCGGAGCGACGCGCATCGAGTACTACGCGACGGTGGGGGACAAGCT 180 consensus_11215#1 ------------------------------------------------------------ consensus_11215#0 GTGCGACATGAACGTCGTCAAGTCGGGGCTCGGCTACTGCGACGTCGAAGTCGGCACCGG 240 consensus_11215#1 ------------------------------------------------------------ consensus_11215#0 CGCCCAGCCCCCGCGCGGCCAGCTCATAAATGTACACTACACTGCAAGATTTACTGACGG 300 consensus_11215#1 ------------------------------------------------------------ consensus_11215#0 GATAGTGTTCGACAGCACCTACAAGCGAGGACGGCCACTGACAATGCGCCTTGGCGCAGG 360 consensus_11215#1 ------------------------------------------------------------ consensus_11215#0 CAAGATCCTCCGAGGGCTTGAACAGGGAATCAGTGGTGGCGGTGGTGTGCCACCCATGCT 420 consensus_11215#1 ------------------------------------------------------------ consensus_11215#0 CGTTGGTGGAAAGCGCAAGCTTATGATACCTGCAACTTTGGCATACGGACCTGAACCAGC 480 consensus_11215#1 ------------------------------------------------------------ consensus_11215#0 AGGTTGCTTCTCAGGAGACTGTAATATTCCCGGCAACACCACACTCCTATACGACATCTT 540 consensus_11215#1 ------------------------------------------------------------ consensus_11215#0 CCTGGTTGGATTTTACAAGTGAGCATATGATGAAAAGGAATATGCATGACTTGAACAGAC 600 consensus_11215#1 ------------------------------------------------------------ consensus_11215#0 TAGGTGCAAACAAGATTTTCGAGTAAATTTTGGCGTTTCATACAAGAGGCGGGACTACGG 660 consensus_11215#1 ------------------------------------------------------------ consensus_11215#0 ACAGATGAAGAGAAAGGGTGCGACATGCCTAAGCCCAGACGCCGAAAGCAAATGCGTCAC 720 consensus_11215#1 -----------------------------------------------------GCGTCAC 7 ******* consensus_11215#0 CGGAGCTCCTTGGGTCTCCAATACGCAGAGTACTACATTTGCAATCTGTACCAAGAAGTG 780 consensus_11215#1 CGGAGCTCCTTGGGTCTCCAATACGCAGAGTACTACATTTGCAATCTGTACCAAGAAGTG 67 ************************************************************ consensus_11215#0 AAAGGATATATAACAAACCGGTCCTCTGATATACTATCAAATTGGTCTTATGTTTTCTAG 840 consensus_11215#1 AAAGGATATATAACAAACCGGTCCTCTGATATACTATCAAATTGGTCTTATGTTTTCTAG 127 ************************************************************ consensus_11215#0 AGAAGAAAAGTCTTGTGTTTGTGTAAGTATAACGTTGTAAAGACATGTCTCATTATTCAT 900 consensus_11215#1 AGAAGAAAAGTCTTGTGTTTGTGTAAGTATAACGTTGTAAAGACATGTCTCATTATTCAT 187 ************************************************************ consensus_11215#0 ACTGTCATTGGTACAGCCAAACACAACAAAAATTCCCATCCTTTGTGGCAAGTCCTAAAA 960 consensus_11215#1 ACTGTCATTGGTACAGCCAAACACAACAAAAATTCCCATCCTTTGTGGCAAGTCCTAACT 247 ********************************************************** consensus_11215#0 AAAAAAAAAAAAAAAA------- 976 consensus_11215#1 AAATGAAGTTGAACTCTGACTGA 270 *** ** ** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||