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Oryza sativa
cluster # 11217 cluster # 11217       Sequences # 8       consensus # 5


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_11217#0 length = 1271 sequences # 1  
consensus_11217#1 length = 1018 sequences # 4  
consensus_11217#2 length = 759 sequences # 1  
consensus_11217#3 length = 434 sequences # 1  
consensus_11217#4 length = 403 sequences # 1  

consensusID : consensus_11217#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1271
fasta sequence
                              [TCTATCTCTCTCTCTCCCGTGAGAATGGCGGGCGCGCCATAGGGGCGGCGGCGAGGCGGCGGTTGGAGCACTGTCGCCGGAGCCGGGGATACCGCCGCCGCAACTTCCGCGTCGGCCACCACGTTGCTCCCATCCACCTCGCGGAGATGGAGCATGCGCCGCTCCTTGACCCCGTCGAGCTGCTCCGGGGAACGCCTAGCGGTCGCTCCCCCACGTCTTCAGCGACGGGAACGACGGGAGGAGCGTGGCCTGGTGGCGAGCGCTCGACGCCGCTGCCTCCACCGCGGCGGCGCCATCCGCGACGGGATCCGGGGTCGAGGCGGGGGCGGCTCGGCGGAGATCACCATGGCCGCGGGAAAAGCCGCGATGATGAACACGCGCGTGGAGGCCGCCGTCACCTAGACCTCCACCGACTCCGACTCCGGTGGCGGCGGCGGCGGGAGAGTCGGCCGAGCGATGAGGGTCAGCGCGCGGCGGCCGGCCGAGGAGGGCCGGCCATGCGTGCTCTAATCACAATTTTTTTGATGGTTAATTTGCTAGTATTTATCAGTCGCCTGATTGATTTTTAATGTGCTGTGTTTAATTTGATGGTTAATTTGCTAGTATCGAGGCTGCGTGCCCCGGCGTCATCTCCTGCGCGGACATTGTCGCGTTCACTGGCCACGACGCATCGAGGTACATGAGCAACGGCGGCGTCAAATTCAATGTCCCGGTCGGCCGCCTCGACGGCATTGTCTCGTCCTCCGAGGTCGCCCAAAATATGCTCCCTGACTCCAAGGCCGACTTGGACAAGCTCACAGCGCCAACTTCGCGGCGAAGGGATTCACCCCGGAGGAGCTGGTGATCCTCTCTGGCGCGTACTCCATAGGCAAGGCGCACTGCTTCTCCTTCAACGACCGCCTCACCGAGCCGAACTCCGAGATCAATGCCAACTAGCACGACAACGTCCTGAACAAGACCTGCTACGCCGCCCCGAACGAGACGACGTTGGCGAACAACATCCGCGACATCGACGTGGCGACGCTGGGGCCCCGGCGCCAGCGCTCCACCCGCCGCTCCACCCGCGGCCTGCTGCCTCACAGCTCCGTCGCCGCCCCTCTGCGCCGCCCGCCGCTGCTCGCCATTCTCAGGGGAGATAGAGAGAGGGGATAGAGAGGAGAGAGAGAAGGGGTAATGAGGATGACAGGTGGGGTCCACGTGGGCCCCACCATTTTATTATTATTGTGTGTGAAACTGACATGTGGATCCCATAGATTTTATTATTTTTCGGA]

[+] EMBL AK066653             [TCTATCTCTCTCTCTCCCGTGAGAATGGCGGGCGCGCCATAGGGGCGGCGGCGAGGCGGCGGTTGGAGCACTGTCGCCGGAGCCGGGGATACCGCCGCCGCAACTTCCGCGTCGGCCACCACGTTGCTCCCATCCACCTCGCGGAGATGGAGCATGCGCCGCTCCTTGACCCCGTCGAGCTGCTCCGGGGAACGCCTAGCGGTCGCTCCCCCACGTCTTCAGCGACGGGAACGACGGGAGGAGCGTGGCCTGGTGGCGAGCGCTCGACGCCGCTGCCTCCACCGCGGCGGCGCCATCCGCGACGGGATCCGGGGTCGAGGCGGGGGCGGCTCGGCGGAGATCACCATGGCCGCGGGAAAAGCCGCGATGATGAACACGCGCGTGGAGGCCGCCGTCACCTAGACCTCCACCGACTCCGACTCCGGTGGCGGCGGCGGCGGGAGAGTCGGCCGAGCGATGAGGGTCAGCGCGCGGCGGCCGGCCGAGGAGGGCCGGCCATGCGTGCTCTAATCACAATTTTTTTGATGGTTAATTTGCTAGTATTTATCAGTCGCCTGATTGATTTTTAATGTGCTGTGTTTAATTTGATGGTTAATTTGCTAGTATCGAGGCTGCGTGCCCCGGCGTCATCTCCTGCGCGGACATTGTCGCGTTCACTGGCCACGACGCATCGAGGTACATGAGCAACGGCGGCGTCAAATTCAATGTCCCGGTCGGCCGCCTCGACGGCATTGTCTCGTCCTCCGAGGTCGCCCAAAATATGCTCCCTGACTCCAAGGCCGACTTGGACAAGCTCACAGCGCCAACTTCGCGGCGAAGGGATTCACCCCGGAGGAGCTGGTGATCCTCTCTGGCGCGTACTCCATAGGCAAGGCGCACTGCTTCTCCTTCAACGACCGCCTCACCGAGCCGAACTCCGAGATCAATGCCAACTAGCACGACAACGTCCTGAACAAGACCTGCTACGCCGCCCCGAACGAGACGACGTTGGCGAACAACATCCGCGACATCGACGTGGCGACGCTGGGGCCCCGGCGCCAGCGCTCCACCCGCCGCTCCACCCGCGGCCTGCTGCCTCACAGCTCCGTCGCCGCCCCTCTGCGCCGCCCGCCGCTGCTCGCCATTCTCAGGGGAGATAGAGAGAGGGGATAGAGAGGAGAGAGAGAAGGGGTAATGAGGATGACAGGTGGGGTCCACGTGGGCCCCACCATTTTATTATTATTGTGTGTGAAACTGACATGTGGATCCCATAGATTTTATTATTTTTCGGA]


>consensus_11217#0 TCTATCTCTCTCTCTCCCGTGAGAATGGCGGGCGCGCCATAGGGGCGGCGGCGAGGCGGC GGTTGGAGCACTGTCGCCGGAGCCGGGGATACCGCCGCCGCAACTTCCGCGTCGGCCACC ACGTTGCTCCCATCCACCTCGCGGAGATGGAGCATGCGCCGCTCCTTGACCCCGTCGAGC TGCTCCGGGGAACGCCTAGCGGTCGCTCCCCCACGTCTTCAGCGACGGGAACGACGGGAG GAGCGTGGCCTGGTGGCGAGCGCTCGACGCCGCTGCCTCCACCGCGGCGGCGCCATCCGC GACGGGATCCGGGGTCGAGGCGGGGGCGGCTCGGCGGAGATCACCATGGCCGCGGGAAAA GCCGCGATGATGAACACGCGCGTGGAGGCCGCCGTCACCTAGACCTCCACCGACTCCGAC TCCGGTGGCGGCGGCGGCGGGAGAGTCGGCCGAGCGATGAGGGTCAGCGCGCGGCGGCCG GCCGAGGAGGGCCGGCCATGCGTGCTCTAATCACAATTTTTTTGATGGTTAATTTGCTAG TATTTATCAGTCGCCTGATTGATTTTTAATGTGCTGTGTTTAATTTGATGGTTAATTTGC TAGTATCGAGGCTGCGTGCCCCGGCGTCATCTCCTGCGCGGACATTGTCGCGTTCACTGG CCACGACGCATCGAGGTACATGAGCAACGGCGGCGTCAAATTCAATGTCCCGGTCGGCCG CCTCGACGGCATTGTCTCGTCCTCCGAGGTCGCCCAAAATATGCTCCCTGACTCCAAGGC CGACTTGGACAAGCTCACAGCGCCAACTTCGCGGCGAAGGGATTCACCCCGGAGGAGCTG GTGATCCTCTCTGGCGCGTACTCCATAGGCAAGGCGCACTGCTTCTCCTTCAACGACCGC CTCACCGAGCCGAACTCCGAGATCAATGCCAACTAGCACGACAACGTCCTGAACAAGACC TGCTACGCCGCCCCGAACGAGACGACGTTGGCGAACAACATCCGCGACATCGACGTGGCG ACGCTGGGGCCCCGGCGCCAGCGCTCCACCCGCCGCTCCACCCGCGGCCTGCTGCCTCAC AGCTCCGTCGCCGCCCCTCTGCGCCGCCCGCCGCTGCTCGCCATTCTCAGGGGAGATAGA GAGAGGGGATAGAGAGGAGAGAGAGAAGGGGTAATGAGGATGACAGGTGGGGTCCACGTG GGCCCCACCATTTTATTATTATTGTGTGTGAAACTGACATGTGGATCCCATAGATTTTAT TATTTTTCGGA



consensusID : consensus_11217#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 1018
fasta sequence
                              [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAGAAGGAAGGTAGCATTAACATTGCAATTGAGATGTTGTTAACAAATGTACCATCAAGGAGGACAATACCACTACTGCTACCACTTCATAATTAGGAGGTCCTTCTGCTAACAAGAACAGCTACTCCTTAATTAATTACCACTGCTAATATTGCCGCTACTCCCACTCTGTTCAATCAACCAATCGATTTACTACTACTAGCTCGTAACAACAACACCATAACAAGGGAGGAATTTAACATGGGGTTAATAAGGATCGATTAATAACAGGAGATTGTTGTGATTGTGATGATCGATGAATTACTAGCTTCTGGGATTTCTTGCCTGATAGTAGATGTCACAGTGCTCTGATCTGCTCTGCTCAGCTCACCGATCGTCGGGCACCCGGTAGGACTCGACGGTGATCTCGGACAGCCATGCACCGGGAAATAGCAGATCGAGTTGCTTCTGCACGGGGCGAGGTCGCCGCCGAGGCCGGCGGCGAGGGCGCGCGCCGGTGACAGCGTAAACGTCCTCCTCGATCTCCTCGCTCGTCAGCGTCACCGAGAACCGCGCCCTGTCGAGGGCCTCCGCGCGGGCCCTCGCGGCCCTCCGCTCCGGCGGCGGAGACGCGCTCGACGCCGGGGCGACCGCCGGGCGACGTCGACTGCGCAGCTTCCACGGGCGCGAAGCAGCCGCCGCCGGGGCCGGGGCGGCTACCGCCGCCGCAACTTCCGCGTCGGCCACCACGTCGCTCCCATCCACCTCGCGGAGGTGGAGCAGGAGCCGCTCCTTGACCCCGTCGAGCTGCTCCGGGGAACGCCTGGCGGCCGCGATGGCGTCCCCGGCGCGGTTGACGTGGGCGCACCGCAGGACGCGGTGGCTCCCCCACGTCTTCAGCGACGGGAACGACGAGAGGACCGCGGCCTGGTGGCGAGCGCTAGACGCCGCCGCCTCCACCGCCGCGGCGCCATCCGCGACGGGATCCGGGGGAGGAGGC]

[-] EMBL CF319720             [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAGAAGGAAGGTAGCATTAACATTGCAATTGAGATGTTGTTAACAAATGTACCATCAAGGAGGACAATACCACTACTGCTACCACTTCATAATTAGGAGGTCCTTCTGCTAACAAGAACAGCTACTCCTTAATTAATTACCACTGCTA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL CB667262             [                                          AAGGAAGGTAGCATTAACATTGCAATTGAGATGTTGTTAACAAATGTACCATCAAGGAGGACAATACCACTACTGCTACCACTTCATAATTAGGAGGTCCTTCTGCTAACAAGAACAGCTACTCCTTAATTAATTACCACTGCTAATATTGCCGCTACTCCCACTCTGTTCAATCAACCAATCGATTTACTACTACTAGCTCGTAACAACAACACCATAACAAGGGAGGAATTTAACATGGGGTTAATAAGGATCGATTAATAACAGGAGATTGTTGTGATTGTGATGATCGATGAATTACTAGCTTCTGGGATTTCTTGCCTGATAGTAGATGTCACAGTGCTCTGATCTGCTCTGCTCAGCTCACCGATCGTCGGGCACCCGGTAGGACTCGACGGTGATCTCGGACAGCCATGCACCGGGAAATAGCAGATCGAGTTGCTTCTGCACGGGGCGAGGTCGCCGCCGAGGCCGGCGGCGAGGGCGCGCGCCGGTGACAGCGTAAACGTCCTCCTCGATCTCCTCGCTCGTCAGCGTCACCGAGAACCGCGCCCTGTCGAGGGCCTCCGCGCGGGCCCTCGCGGCCCTCCGCTCCGGCGGCGGAGACGCGCTCGACGCCGGGGCGACCGCCGGGCGACGTCGACTGCGCAGCTTCCACGGGCGCGAAGCAGCCGCCGCCGGGGCCGGGGCGGCTACCGCCGCCGCAACTTCCGCGTCGGCCACCACGTCGCTCCCA                                                                                                                                                                                                                                                ]
[+] EMBL CB667218             [                                                  TAGCATTAACATTGCAATTGAGATGTTGTTAACAAATGTACCATCAAGGAGGACAATACCACTACTGCTACCACTTCATAATTAGGAGGTCCTTCTGCTAACAAGAACAGCTACTCCTTAATTAATTACCACTGCTAATATTGCCGCTACTCCCACTCTGTTCAATCAACCAATCGATTTACTACTACTAGCTCGTAACAACAACACCATAACAAGGGAGGAATTTAACATGGGGTTAATAAGGATCGATTAATAACAGGAGATTGTTGTGATTGTGATGATCGATGAATTACTAGCTTCTGGGATTTCTTGCCTGATAGTAGATGTCACAGTGCTCTGATCTGCTCTGCTCAGCTCACCGATCGTCGGGCACCCGGTAGGACTCGACGGTGATCTCGGACAGCCATGCACCGGGAAATAGCAGATCGAGTTGCTTCTGCACGGGGCGAGGTCGCCGCCGAGGCCGGCGGCGAGGGCGCGCGCCGGTGACAGCGTAAACGTCCTCCTCGATCTCCTCGCTCGTCAGCGTCACCGAGAACCGCGCCCTGTCGAGGGCCTCCGCGCGGGCCCTCGCGGCCCTCCGCTCCGGCGGCGGAGACGCGCTCGACGCCGGGGCGACCGCCGGGCGACGTCGACTGCGCAGCTTCCACGGGCGCGAAGCAGCCGCCGCCGGGGCCGGGGCGGCTACCGCCGCCGCAACTTCCGCGTCGGCCACCACGTCG                                                                                                                                                                                                                                                      ]
[-] EMBL CB667217             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            CTCGACGCCGGGGCGACCGCCGGGCGACGTCGACTGCGCAGCTTCCACGGGCGCGAAGCAGCCGCCGCCGGGGCCGGGGCGGCTACCGCCGCCGCAACTTCCGCGTCGGCCACCACGTCGCTCCCATCCACCTCGCGGAGGTGGAGCAGGAGCCGCTCCTTGACCCCGTCGAGCTGCTCCGGGGAACGCCTGGCGGCCGCGATGGCGTCCCCGGCGCGGTTGACGTGGGCGCACCGCAGGACGCGGTGGCTCCCCCACGTCTTCAGCGACGGGAACGACGAGAGGACCGCGGCCTGGTGGCGAGCGCTAGACGCCGCCGCCTCCACCGCCGCGGCGCCATCCGCGACGGGATCCGGGGGAGGAGGC]


>consensus_11217#1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAGAAGGAAGGTAGCATTAAC ATTGCAATTGAGATGTTGTTAACAAATGTACCATCAAGGAGGACAATACCACTACTGCTA CCACTTCATAATTAGGAGGTCCTTCTGCTAACAAGAACAGCTACTCCTTAATTAATTACC ACTGCTAATATTGCCGCTACTCCCACTCTGTTCAATCAACCAATCGATTTACTACTACTA GCTCGTAACAACAACACCATAACAAGGGAGGAATTTAACATGGGGTTAATAAGGATCGAT TAATAACAGGAGATTGTTGTGATTGTGATGATCGATGAATTACTAGCTTCTGGGATTTCT TGCCTGATAGTAGATGTCACAGTGCTCTGATCTGCTCTGCTCAGCTCACCGATCGTCGGG CACCCGGTAGGACTCGACGGTGATCTCGGACAGCCATGCACCGGGAAATAGCAGATCGAG TTGCTTCTGCACGGGGCGAGGTCGCCGCCGAGGCCGGCGGCGAGGGCGCGCGCCGGTGAC AGCGTAAACGTCCTCCTCGATCTCCTCGCTCGTCAGCGTCACCGAGAACCGCGCCCTGTC GAGGGCCTCCGCGCGGGCCCTCGCGGCCCTCCGCTCCGGCGGCGGAGACGCGCTCGACGC CGGGGCGACCGCCGGGCGACGTCGACTGCGCAGCTTCCACGGGCGCGAAGCAGCCGCCGC CGGGGCCGGGGCGGCTACCGCCGCCGCAACTTCCGCGTCGGCCACCACGTCGCTCCCATC CACCTCGCGGAGGTGGAGCAGGAGCCGCTCCTTGACCCCGTCGAGCTGCTCCGGGGAACG CCTGGCGGCCGCGATGGCGTCCCCGGCGCGGTTGACGTGGGCGCACCGCAGGACGCGGTG GCTCCCCCACGTCTTCAGCGACGGGAACGACGAGAGGACCGCGGCCTGGTGGCGAGCGCT AGACGCCGCCGCCTCCACCGCCGCGGCGCCATCCGCGACGGGATCCGGGGGAGGAGGC



consensusID : consensus_11217#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 759
fasta sequence
                              [TCCTCTCCTTGCAGGCGCCACGCCGCCTTTCCATCCCGGGCGCCACTGCACCGCCGTCTCCACATCCCTGGAGCCCCGCCACCGTATCCTCTCCAACCCCATCCCCTCATCCTCCTCCACCCCTGCCACAGCCTCCTCCTCCCCATCCCCACTGTCGTTTCCTCGCCATCCCCATCGATGTCTTCTCTTCCCCATCTTCAGTGGCACTACCATGACCTCCTCCTATCCATCTCCGACAGAAGCTGCAGATCTGGTGTCCTTCCATCTTCTTTGCTCCCTATTCCTCGCAATGGGGAAGGTCAACACCTCTGCCTCCTTTCGTGCTGGTGACTCCAATGCTTCTACCTGTCTCCATCCCTAATTCGCCACTAGGAGGCACGGTGAAGCAAAGACAAAAGGGAGACGCGGAGGGGAATATGGCGGCAGATTGGGAGGGGAGATGGTCATATGGAGATGGAGGCGGAAAGGGCCTCTTCGTCACGTATAGCAACTTGTGCTTCCACTCCGCTTCCACTTACGGCCTCCGCCTGACCGTGCGGCGGCCGCCGGCGTTAGGCCCATGGGGGCGGGAGTGGAGGAGGCCACGCCTCTCCACGTCGTCCTTATCTGCGCCGGCGAGAGGAGGGAGCAGAGGGGAGATATAGAGAGAGGGGAAGAAGAGGAAGGGATTGAGAATGACAGGTGGGGCCCACGTTGACCCCACCATTTTTTTATTATTGTGTGTGAAACTGACATGTGGGTCCCATAAGTTTTATTATT]

[+] EMBL AK099422             [TCCTCTCCTTGCAGGCGCCACGCCGCCTTTCCATCCCGGGCGCCACTGCACCGCCGTCTCCACATCCCTGGAGCCCCGCCACCGTATCCTCTCCAACCCCATCCCCTCATCCTCCTCCACCCCTGCCACAGCCTCCTCCTCCCCATCCCCACTGTCGTTTCCTCGCCATCCCCATCGATGTCTTCTCTTCCCCATCTTCAGTGGCACTACCATGACCTCCTCCTATCCATCTCCGACAGAAGCTGCAGATCTGGTGTCCTTCCATCTTCTTTGCTCCCTATTCCTCGCAATGGGGAAGGTCAACACCTCTGCCTCCTTTCGTGCTGGTGACTCCAATGCTTCTACCTGTCTCCATCCCTAATTCGCCACTAGGAGGCACGGTGAAGCAAAGACAAAAGGGAGACGCGGAGGGGAATATGGCGGCAGATTGGGAGGGGAGATGGTCATATGGAGATGGAGGCGGAAAGGGCCTCTTCGTCACGTATAGCAACTTGTGCTTCCACTCCGCTTCCACTTACGGCCTCCGCCTGACCGTGCGGCGGCCGCCGGCGTTAGGCCCATGGGGGCGGGAGTGGAGGAGGCCACGCCTCTCCACGTCGTCCTTATCTGCGCCGGCGAGAGGAGGGAGCAGAGGGGAGATATAGAGAGAGGGGAAGAAGAGGAAGGGATTGAGAATGACAGGTGGGGCCCACGTTGACCCCACCATTTTTTTATTATTGTGTGTGAAACTGACATGTGGGTCCCATAAGTTTTATTATT]


>consensus_11217#2 TCCTCTCCTTGCAGGCGCCACGCCGCCTTTCCATCCCGGGCGCCACTGCACCGCCGTCTC CACATCCCTGGAGCCCCGCCACCGTATCCTCTCCAACCCCATCCCCTCATCCTCCTCCAC CCCTGCCACAGCCTCCTCCTCCCCATCCCCACTGTCGTTTCCTCGCCATCCCCATCGATG TCTTCTCTTCCCCATCTTCAGTGGCACTACCATGACCTCCTCCTATCCATCTCCGACAGA AGCTGCAGATCTGGTGTCCTTCCATCTTCTTTGCTCCCTATTCCTCGCAATGGGGAAGGT CAACACCTCTGCCTCCTTTCGTGCTGGTGACTCCAATGCTTCTACCTGTCTCCATCCCTA ATTCGCCACTAGGAGGCACGGTGAAGCAAAGACAAAAGGGAGACGCGGAGGGGAATATGG CGGCAGATTGGGAGGGGAGATGGTCATATGGAGATGGAGGCGGAAAGGGCCTCTTCGTCA CGTATAGCAACTTGTGCTTCCACTCCGCTTCCACTTACGGCCTCCGCCTGACCGTGCGGC GGCCGCCGGCGTTAGGCCCATGGGGGCGGGAGTGGAGGAGGCCACGCCTCTCCACGTCGT CCTTATCTGCGCCGGCGAGAGGAGGGAGCAGAGGGGAGATATAGAGAGAGGGGAAGAAGA GGAAGGGATTGAGAATGACAGGTGGGGCCCACGTTGACCCCACCATTTTTTTATTATTGT GTGTGAAACTGACATGTGGGTCCCATAAGTTTTATTATT



consensusID : consensus_11217#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 434
fasta sequence
                              [AGCCGCCCATGCGAGCCGTTCTTCCTGTCTCCTGATGGCGCGCCGACGGATGGACGAGGCAGCGGAGGCGGTTCCGTGCCAGTGGCCGAGAAGAAGAAGAAAAAGAAGCTGTCCGGCGCGGTGGTCGCGACCATTGCCGTAGGCGGCGGGATGGCGGCTCTACTGGCTCTGGTGCTACTCTTGGTCCGAGGCGCCGCTCCACCCGCCGCCTGCCAGCTCTCGGCTCTGTCGCTACCCCTTTGCGCCGCCCGCCGCCGCTNGCCATTCTCGGGGAGAGGGGGGACAGAGAGAAAAGGATAGAGAGAGATGGGATAGAGAGAAGGGGTAGTGAGGATGACAGGTGGGGTCCACGTGGGCCCCACCATTTTTTATTATTGTGTGTGTGAAACTGACATATGGGTCCCATAGGTTTTATTATTTTTCAGATCGAAAAA]

[+] EMBL AU166872             [AGCCGCCCATGCGAGCCGTTCTTCCTGTCTCCTGATGGCGCGCCGACGGATGGACGAGGCAGCGGAGGCGGTTCCGTGCCAGTGGCCGAGAAGAAGAAGAAAAAGAAGCTGTCCGGCGCGGTGGTCGCGACCATTGCCGTAGGCGGCGGGATGGCGGCTCTACTGGCTCTGGTGCTACTCTTGGTCCGAGGCGCCGCTCCACCCGCCGCCTGCCAGCTCTCGGCTCTGTCGCTACCCCTTTGCGCCGCCCGCCGCCGCTNGCCATTCTCGGGGAGAGGGGGGACAGAGAGAAAAGGATAGAGAGAGATGGGATAGAGAGAAGGGGTAGTGAGGATGACAGGTGGGGTCCACGTGGGCCCCACCATTTTTTATTATTGTGTGTGTGAAACTGACATATGGGTCCCATAGGTTTTATTATTTTTCAGATCGAAAAA]


>consensus_11217#3 AGCCGCCCATGCGAGCCGTTCTTCCTGTCTCCTGATGGCGCGCCGACGGATGGACGAGGC AGCGGAGGCGGTTCCGTGCCAGTGGCCGAGAAGAAGAAGAAAAAGAAGCTGTCCGGCGCG GTGGTCGCGACCATTGCCGTAGGCGGCGGGATGGCGGCTCTACTGGCTCTGGTGCTACTC TTGGTCCGAGGCGCCGCTCCACCCGCCGCCTGCCAGCTCTCGGCTCTGTCGCTACCCCTT TGCGCCGCCCGCCGCCGCTNGCCATTCTCGGGGAGAGGGGGGACAGAGAGAAAAGGATAG AGAGAGATGGGATAGAGAGAAGGGGTAGTGAGGATGACAGGTGGGGTCCACGTGGGCCCC ACCATTTTTTATTATTGTGTGTGTGAAACTGACATATGGGTCCCATAGGTTTTATTATTT TTCAGATCGAAAAA



consensusID : consensus_11217#4
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 403
fasta sequence
                              [CGCGCGCTTCCCGCCTGAGTCCTTTGCCGGCAACCTCCAGCTCTGCGGCAAGCCCCTGAGCCGCCCATGCGAGCCCTTCTTCCCGTCTCCTGCTGGCGCGCCGACGCCGACGGATGGACGAGGCAGCGGAGGCGGTTCCGTGCCAGTGTCCGAGAAGAAGAAGAAGAAGCTGTCCGGCGCGGCGGTCGCGGNCCATTGCCGTGGGCGGCGGGGCGGCGGCACTGCTGGCCATGGTGCTACTCGTGGTCTGCACCGCGGCCTCCCGGCGCCGCGCGGCGAACGGCGAGGTCGGGAAAACAGNNGCGGCGAGGGGCCTGACGCCGCCGTCGACGGCTNAGGGGAGCTGGGCGAGGTGANGTCGTCGACTCGAAGGAGATCGCTCTGGCGGNGGCGGCGGCGACGG]

[+] EMBL AU094835             [CGCGCGCTTCCCGCCTGAGTCCTTTGCCGGCAACCTCCAGCTCTGCGGCAAGCCCCTGAGCCGCCCATGCGAGCCCTTCTTCCCGTCTCCTGCTGGCGCGCCGACGCCGACGGATGGACGAGGCAGCGGAGGCGGTTCCGTGCCAGTGTCCGAGAAGAAGAAGAAGAAGCTGTCCGGCGCGGCGGTCGCGGNCCATTGCCGTGGGCGGCGGGGCGGCGGCACTGCTGGCCATGGTGCTACTCGTGGTCTGCACCGCGGCCTCCCGGCGCCGCGCGGCGAACGGCGAGGTCGGGAAAACAGNNGCGGCGAGGGGCCTGACGCCGCCGTCGACGGCTNAGGGGAGCTGGGCGAGGTGANGTCGTCGACTCGAAGGAGATCGCTCTGGCGGNGGCGGCGGCGACGG]


>consensus_11217#4 CGCGCGCTTCCCGCCTGAGTCCTTTGCCGGCAACCTCCAGCTCTGCGGCAAGCCCCTGAG CCGCCCATGCGAGCCCTTCTTCCCGTCTCCTGCTGGCGCGCCGACGCCGACGGATGGACG AGGCAGCGGAGGCGGTTCCGTGCCAGTGTCCGAGAAGAAGAAGAAGAAGCTGTCCGGCGC GGCGGTCGCGGNCCATTGCCGTGGGCGGCGGGGCGGCGGCACTGCTGGCCATGGTGCTAC TCGTGGTCTGCACCGCGGCCTCCCGGCGCCGCGCGGCGAACGGCGAGGTCGGGAAAACAG NNGCGGCGAGGGGCCTGACGCCGCCGTCGACGGCTNAGGGGAGCTGGGCGAGGTGANGTC GTCGACTCGAAGGAGATCGCTCTGGCGGNGGCGGCGGCGACGG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_11217#0      TCTATCTCTCTCTCTCCCGTGAGAATGGCGGGCGCGCCATAGGGGCGGCGGCGAGGCGGC 60
consensus_11217#3      ------------------------------------------------------------
consensus_11217#4      ------------------------------------------------------------
consensus_11217#1      ------------------------------------------------------------
consensus_11217#2      ------------------------------------------------------------
                                                                                   

consensus_11217#0      GGTTGGAGCACTGTCGCCGGAGCCGGGGATACCGCCGCCGCAACTTCCGCGTCGGCCACC 120
consensus_11217#3      ------------------------------------------------------------
consensus_11217#4      ------------------------------------------------------------
consensus_11217#1      ------------------------------------------------------------
consensus_11217#2      ------------------------------------------------------------
                                                                                   

consensus_11217#0      ACGTTGCTCCCATCCACCTCGCGGAGATGGAGCATGCGCCGCTCCTTGACCCCGTCGAGC 180
consensus_11217#3      ------------------------------------------------------------
consensus_11217#4      ------------------------------------------------------------
consensus_11217#1      ------------------------------------------------------------
consensus_11217#2      ------------------------------------------------------------
                                                                                   

consensus_11217#0      TGCTCCGGGGAACGCCTAGCGGTCGCTCCCCCACGTCTTCAGCGACGGGAACGACGGGAG 240
consensus_11217#3      ------------------------------------------------------------
consensus_11217#4      ------------------------------------------------------------
consensus_11217#1      ------------------------------------------------------------
consensus_11217#2      ------------------------------------------------------------
                                                                                   

consensus_11217#0      GAGCGTGGCCTGGTGGCGAGCGCTCGACGCCGCTGCCTCCACCGCGGCGGCGCCATCCGC 300
consensus_11217#3      ------------------------------------------------------------
consensus_11217#4      ------------------------------------------------------------
consensus_11217#1      ----------------TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAGAA 44
consensus_11217#2      ------------------------------------------------------------
                                                                                   

consensus_11217#0      GACGGGATCCGGGGTCGAGGCGGGGGCGGCTCGGCGGAGATCACCATGGCCGCGGGAAAA 360
consensus_11217#3      ------------------------------------------------------------
consensus_11217#4      ------------------------------------------------------------
consensus_11217#1      GGAAGGTAGCATTAACATTGCAATTGAGATGTTGTTAACAAATGTACCATCAAGGAGGAC 104
consensus_11217#2      ------------------------------------------------------------
                                                                                   

consensus_11217#0      GCCGCGATGATGAACACGCGCGTGGAGGCCGCCGTCACCTAGACCTCCACCGACTCCGAC 420
consensus_11217#3      ------------------------------------------------------------
consensus_11217#4      ------------------------------------------------------------
consensus_11217#1      AATACCACTACTGCTACCACTTCATAATTAGGAGGTCCTTCTGCTAACAAGAACAGCTAC 164
consensus_11217#2      ------------------------------------------------------------
                                                                                   

consensus_11217#0      TCCGGTGGCGGCGGCGGCGGGAGAGTCGGCCGAGCGATGAGGGTCAGCGCGCGGCGGCCG 480
consensus_11217#3      ------------------------------------------------------------
consensus_11217#4      ------------------------------------------------------------
consensus_11217#1      TCCTTAATTAATTACCACTGCTAATATTGCCGC-TACTCCCACTCTGTTCAATCAACCAA 223
consensus_11217#2      ------------------------------------------------------------
                                                                                   

consensus_11217#0      GCCGAGGAGGGCCGGCCATGCGTGCTCTAATCACAATTTTTTTGATGGTTAATTTGCTAG 540
consensus_11217#3      ------------------------------------------------------------
consensus_11217#4      ------------------------------------------------------------
consensus_11217#1      TCGATTTACTACTACTAGCTCGTAACAACAACACCATAACAAGGGAGGAATTTAACATGG 283
consensus_11217#2      ----------------------------------------------------------TC 2
                                                                                   

consensus_11217#0      TATTTATCAGTCGCCTGATTGATTTTTAATGTGCTGTGTTTAATTTGATGGTTAATTTGC 600
consensus_11217#3      ------------------------------------------------------------
consensus_11217#4      ------------------------------------------------------------
consensus_11217#1      GGTTAATAAGGATCGATTAATAACAGGAGATTGTTGTGATTGTGATGATCGATGAATTAC 343
consensus_11217#2      CTCTCCTTGCAGGCGCCACGCCGCCTTTCCATCCCGGGCGCCACTGCACCGCCGTCTCCA 62
                                                                                   

consensus_11217#0      TAGTATCGAGGCTGCGTGCCCCGGCGTCATCTCCTGCGCGGACATTGTCGCGTTCACTGG 660
consensus_11217#3      ------------------------------------------------------------
consensus_11217#4      ------------------------------------------------------------
consensus_11217#1      TAGCTTCTGGGATTTCTTGCCTGATAGTAGATGTCACAGTGCTCTGATCTGCTCTGCTCA 403
consensus_11217#2      CATCCCTGGAGCCCCGCCACCGTATCCTCTCCAACCCCATCCCCTCATCCTCCTCCACCC 122
                                                                                   

consensus_11217#0      CCACGACGCATCGAGGTACATGAGCAACGGCGGCGTCAAATTCAATGTCCCGGTCGGCCG 720
consensus_11217#3      ------------------------------------------------------------
consensus_11217#4      ------------------------------------------------------------
consensus_11217#1      GCTCACCG-ATCGTCGGGCACCCGGTAGGACTCGACGGTGATCTCGGACAGCCATGCACC 462
consensus_11217#2      CTGCCACAGCCTCCTCCTCCCCATCCCCACTGTCGTTTCCTCGCCATCCCCATCGATGTC 182
                                                                                   

consensus_11217#0      CCTCGACGGCATTGTCTCGTCCTCCGAGGTCGCCCAAAATATGCTCCCTGACTCCAAGGC 780
consensus_11217#3      ------------------------------------------------------------
consensus_11217#4      ------------------------------------------------------------
consensus_11217#1      GGGAAATAGCAGATCGAGTTGCTTCTGCACGGGGCGAGGTCGCCGCCGAGGCCGGCGGCG 522
consensus_11217#2      TTCTCTTCCCCATCTTCAGTGGCACTACCATGACCTCCTCCTATCCATCTCCGACAGAAG 242
                                                                                   

consensus_11217#0      CGACTTGGACAAGCTCACAGCGCCAACTTCGCGGCGAAGGGATTCACCCCGGAGGAGCT- 839
consensus_11217#3      ------------------------------------------------------------
consensus_11217#4      --------------------CGCGCGCTTCCCGCCTGAGTCCTTTGCCGGCAACCTCCA- 39
consensus_11217#1      AGGGCGCGCGCCGGTGACAGCGTAAACGTCCTCCTCGATCTCCTCGCTCGTCAGCGTCAC 582
consensus_11217#2      CTGCAGATCTGGTGTCCTTCCATCTTCTTTGCTCCCTA-TTCCTCGCAATGGGGAAGGTC 301
                                                                                   

consensus_11217#0      -GGTGATCCTCTCTGGCGCGTACTCCATAGGCAAGGCGCACTGCTTCTCCTT-CAACGAC 897
consensus_11217#3      --------------------AGCCGCCCATGCGAGCCGTTCTTCCTGTCTCC-TGATGGC 39
consensus_11217#4      -GCTCTGCGGCAAGCCCCTGAGCCGCCCATGCGAGCCCTTCTTCCCGTCTCC-TGCTGGC 97
consensus_11217#1      CGAGAACCGCGCCCTGTCGAGGGCCTCCGCGCGGGCCCTCGCGGCCCTCCGC-T-CCGGC 640
consensus_11217#2      AACACCTCTGCCTCCTTTCGTGCTGGTGACTCCAATGCTTCTACCTGTCTCCATCCCTAA 361
                                                      *               **           

consensus_11217#0      CGCCTCACCGAGCCGAACTCCGAGATCAATGCCAAC--TAG-CACGACAACGTCCTGAAC 954
consensus_11217#3      GCGCCGACG------GATGGACGAGGCAGCGGAGGCGGTTC-CGTGCCAGTGGCC--GAG 90
consensus_11217#4      GCGCCGACGCCGACGGATGGACGAGGCAGCGGAGGCGGTTC-CGTGCCAGTGTCC--GAG 154
consensus_11217#1      GGCGGAGACGCGCTCGACGCCGGGGCGACCGCCGGGCGACG-T-CGACTGCGCAGCTTCC 698
consensus_11217#2      TTCGCCACTAGGAGGCACGGTGAAGCAAAGACAAAAGGGAGACGCGGAGGGGAATATGGC 421
                                       *          *                 *     *        

consensus_11217#0      AAGACCTGCTACGCCGCCCCGAACGA--GACGACGTTGGCGAACAACATCCGC-GACATC 1011
consensus_11217#3      AAGAAGAAGAAAAAGAAGCTGTCCGG--CGCGGTGGTCGCG-ACCATTGCCGTAGGCGGC 147
consensus_11217#4      AAGAAGAAGAA---GAAGCTGTCCGG--CGCGGCGGTCGCGGNCCATTGCCGTGGGCGGC 209
consensus_11217#1      ACGGGCGCGAAGCAGCCGCCG-CCGG--GGCCGGGGCGGCT-ACCGCCGCCGCAACTTCC 754
consensus_11217#2      GGCAGATTGGGAGGGGAGATGGTCATATGGAGATGGAGGCGGAAAGGGCCTCTTCGTCAC 481
                                           *  *          *   **         *         *

consensus_11217#0      GACGTGGCGACGC-TGG---GGCCCCGGCGCCA---GCGCTCCAC-CC--GCCGCTCCAC 1061
consensus_11217#3      GGGATGGCGGCTC-TACT--GGCTCTGGTGCTACTCTTGGTCCGAGGC--GCCGCTCCAC 202
consensus_11217#4      GGGGCGGCGGCAC-TGCT--GGCCATGGTGCTACTCGTGGTCTGCACC--GCGGCCT--C 262
consensus_11217#1      GCGTCGGCCACCA-CGTC--GCTCCCATCCACCTCGCGGAGGTGGAGC--AGGAGCCGCT 809
consensus_11217#2      G-TATAGCAACTTGTGCTTCCACTCCGCTTCCACTTACGGCCTCCGCCTGACCGTGCGGC 540
                       *     **  *                           *        *            

consensus_11217#0      --CCGCGGCCTGCTGCCTCACAGCTCCGTCGCCGCCCCTCTGCGCCGCCCGCCGC-TGCT 1118
consensus_11217#3      --CCGCCGCCTGCCAGCTCTCGGCTCTGTCGCTACCCCTTTGCGCCGCCCGCCGC-CGCT 259
consensus_11217#4      --CCGGCGCCGCGCGGCGAACGGCGAGGTCGGGAAAACAGNN-GCGGCGAGGGGC-CTGA 318
consensus_11217#1      --CCTTGACC--CCGTCGAGCTGCTCCGG-GGAACGCCTGGCGGCCGCGATGGCG-TCCC 863
consensus_11217#2      GGCCGCCGGCGTTAGGCCCATGGGGGCGGGAGTGGAGGAGGCCACGCCTCTCCACGTCGT 600
                         **     *      *     *    *                *  *            

consensus_11217#0      CGCCATTCTC-------AGGGGAGATAGAGAGAGGGGAT-------AGAGAGGAGAGAGA 1164
consensus_11217#3      NGCCATTCTCGG-GGAGAGGGGGGACAGAGAGAAAAGGATAGAGAGAGATGGGATAGAGA 318
consensus_11217#4      CGCCGCCGTCGACGGCTNAGGGGAGCTGGGCGAGGTGANGTCGTCGACTCGAAGGAGATC 378
consensus_11217#1      CGGCGCGGTTGACGTGGGCGCACCGCAGGACGCGGTGGCTCCCCCACGTCTTCAGCGACG 923
consensus_11217#2      CCTTATCTGCGCCGGCGAGAGGAGGGAGCAGAGGGGAGATATAGAGAGAGGGGAAGAAGA 660
                                                  *                             *  

consensus_11217#0      GAAGGGGTAATGAGGATGACAGGTGGGGTCCACGTGGGCCCCACCATTTTAT-TATTATT 1223
consensus_11217#3      GAAGGGGTAGTGAGGATGACAGGTGGGGTCCACGTGGGCCCCACCATTTTTTATTATTGT 378
consensus_11217#4      GCTCTGGCGGNGGCGGCGGC-GACGG---------------------------------- 403
consensus_11217#1      GGAACGACGA-GAGGACCGCGGCCTGGTGGCGAGCGCTAGACGCCGCCGCCTCCACCGCC 982
consensus_11217#2      GGAAGGG-ATTGAGAATGACAGGTGGGGCCCACGTTGACCCCACCATTTTTT-TATTATT 718
                       *    *     *       * *   *                                  

consensus_11217#0      GTGTGTGAAACTGACATGTGGATCCCATAGATTTTATTATTTTTCGGA-------- 1271
consensus_11217#3      GTGTGTGAAACTGACATATGGGTCCCATAGGTTTTATTATTTTTCAGATCGAAAAA 434
consensus_11217#4      --------------------------------------------------------
consensus_11217#1      GCG-GCGCCATCCGCGACGGGATCCGGGGGAGGAGGC------------------- 1018
consensus_11217#2      GTGTGTGAAACTGACATGTGGGTCCCATAAGTTTTATTATT--------------- 759
                                                                               




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)