These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11221#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 1749 fasta sequence [TTTTCTTCTTTCCATCATCTTATGCTCATGGATCTTTGTTGTAGTGTCCTGGAAAAAGCTCAATTGCATGAGGCGAAGGCTTCCACCTGGACCTCCAAGGTGGCCAATCTTTGGTAACCTTCTCCAGTTGAGCCCTCTTCCCCACAAAGACTTCGCTCGATTCTGCACCAAGTATGGCCCCCTGGTCTATCTTCGTCTTGGAACCATCGATGCCATCACCACTGATGACCCTGAAGTCATCCGTGAGATACTCATCCGGCAAGATGAGGTATTTGCTTCACGGCCTCGGACCTTGGCCGCTGTTCACCTTGCCTATGGGTGCGGTGATGTGGCCCTTGCT-CCGCTGGGG-CCGAAC-TGG-AAGAGGA-TGAGGAGGGTTTGCATGGAGCACTTGC-TGACAACCAAGCGGCTTGAATCTTTTGCTGC-TCACCG-AGCACTGGAGGCTG-AGCACCTCTGTC-AGTTTGTGTGGGCTAAAGCCCAGTCAGGGAAACCTGTGAATCTCAGAGAGGTTCTTGGGGCCTTCTCGATGAACAACGTGACAAGGATGTTGCTAGGGAAACAGTACTTTGGTCTGCAGTCAGCAGGCCCTGGTGAAGCAATGGAGTTCATGCACATCACCCATGAACTGTTCTGGCTGCTGGGCCTGATCTATCTTGGGGACTACTTGCCAGCCTGGAGGTGGCTTGATCCATATGGGTGTGAGAAGAAGATGAGGGAGGTTG-AGAAGAAGGTGGACGAC-TTCCACCAGAAGATTA-TTGATGAGCACAGGAAGGCTAGGGAGGCCAAGAAGAGTGCATCCCTTGATGATGATAACAAAGAAGACATGGACTTTGTTGATGTACTGCTTTCTTTGCCCGGCGAGAACGGAAAAGAGCACATGGACGACGTCGAGATCAAAGCTTTGATGCAGGACATGATTGCTGCTGCCACCGACACATCATCGGTGACCAACGAGTGGGTGATGGCGGAGGTGATCAAGAACC-CCC-GG-GTG-T-CCGCAAGATCCA-GGA-GGA-GCTCGACGGCGTCGTCGGCCGCGGCCGCATGGTGGCGGAGTCGGACCTCGGCCAGCTGACCTACCTCCGGTGCGTCGTCCGCGAGTCCTTCCGGATGCACCCGGCGGGGCCATTCCTGATCCCCCACGAGTCCCTGAAGCCGACGACGATCATGGGCTACGACATCCCGGCGCGGACGAGGATCTTCATCAACACCCACGCGCTCGGCCGGAACACCCGCATCTGGGACGACGTCGACGCGTTCCGGCCGGAGAGGCACCTGCCGGCATCGGCGGACGGCGGCCGGGTGGAGATCAGCCACCTGCCGGACTTCAAGATCCTCCCCTTCAGCGCCGGCAAGCGCAAGTGCCCCGGCGCGCCGCTCGGCGTCATCCTGGTGCTCATGGCGCTCGCCAGGCTCTTCCACTGCTTCGACTGGTCGCCGCCGGACGGCCTCCGCCCCGACGACATCGACACCCAGGAGGTGTACGGCATGACCATGCCCAAGGCCAAGCCGCTCGTCGCCGTCGCCACGCCGCGCCTGCCGCCGCAGATGTACGGTCGCCATGGCAAGCAAGTTTGAGCTAGGCGTCGTGTGGACAATAATGCAGACAGGAGAAGCCGATCGAGCTATGCAGCTTAACGTAATTAAGAGTGAATTAATTCTACATGTATCTATCAAATCAATCACACATGTAGACAGTGACGATGAATGCAAGTGCTGATGAATCAAAGAAATTAAGCATCAGCTGATGAATCTCAC] [+] EMBL AK106843 [TTTTCTTCTTTCCATCATCTTATGCTCATGGATCTTTGTTGTAGTGTCCTGGAAAAAGCTCAATTGCATGAGGCGAAGGCTTCCACCTGGACCTCCAAGGTGGCCAATCTTTGGTAACCTTCTCCAGTTGGGCCCTCTTCCCCACAAAGACTTCGCTCGATTCTGCACCAAGTATGGCCCCCTGGTCTATCTTCGTCTTGGAACCATCGATGCCATCACCACTGATGACCCTGAAGTCATCCGTGAGATACTCATCCGGCAAGATGAGGTATTTGCTTCACGGCCTCGGACCTTGGCCGCTGTTCACCTTGCCTATGGGTGCGGTGATGTGGCCCTTGCT CCGCTGGGG CCGAAC TGG AAGAGGA TGAGGAGGGTTTGCATGGAGCACTTGC TGACAACCAAGCGGCTTGAATCTTTTGCTGC TCACCG AGCACTGGAGGCTG AGCACCTCTGTC AGTTTGTGTGGGCTAAAGCCCAGTCAGGGAAACCTGTGAATCTCAGAGAGGTTCTTGGGGCCTTCTCGATGAACAACGTGACAAGGATGTTGCTAGGGAAACAGTACTTTGGTCTGCAGTCAGCAGGCCCTGGTGAAGCAATGGAGTTCATGCACATCACCCATGAACTGTTCTGGCTGCTGGGCCTGATCTATCTTGGGGACTACTTGCCAGCCTGGAGGTGGCTTGATCCATATGGGTGTGAGAAGAAGATGAGGGAGGTTG AGAAGAAGGTGGACGAC TTCCACCAGAAGATTA TTGATGAGCACAGGAAGGCTAGGGAGGCCAAGAAGAGTGCATCCCTTGATGATGATAACAAAGAAGACATGGACTTTGTTGATGTACTGCTTTCTTTGCCCGGCGAGAACGGAAAAGAGCACATGGACGACGTCGAGATCAAAGCTTTGATGCAGGACATGATTGCTGCTGCCACCGACACATCATCGGTGACCAACGAGTGGGTGATGGCGGAGGTGATCAAGAACC CCC GG GTGCT CCGCAAGATCCA GGA GGA GCTCGACGGCGTCGTCGGCCGCGGCCGCATGGTGGCGGAGTCGGACCTCGGCCAGCTGACCTACCTCCGGTGCGTCGTCCGCGAGTCCTTCCGGATGCACCCGGCGGGGCCATTCCTGATCCCCCACGAGTCCCTGAAGCCGACGACGATCATGGGCTACGACATCCCGGCGCGGACGAGGATCTTCATCAACACCCACGCGCTCGGCCGGAACACCCGCATCTGGGACGACGTCGACGCGTTCCGGCCGGAGAGGCACCTGCCGGCATCGGCGGACGGCGGCCGGGTGGAGATCAGCCACCTGCCGGACTTCAAGATCCTCCCCTTCAGCGCCGGCAAGCGCAAGTGCCCCGGCGCGCCGCTCGGCGTCATCCTGGTGCTCATGGCGCTCGCCAGGCTCTTCCACTGCTTCGACTGGTCGCCGCCGGACGGCCTCCGCCCCGACGACATCGACACCCAGGAGGTGTACGGCATGACCATGCCCAAGGCCAAGCCGCTCGTCGCCGTCGCCACGCCGCGCCTGCCGCCGCAGATGTACGGTCGCCATGGCAAGCAAGTTTGAGCTAGGCGTCGTGTGGACAATAATGCAGACAGGAGAAGCCGATCGAGCTATGCAGCTTAACGTAATTAAGAGTGAATTAATTCTACATGTATCTATCAAATCAATCACACATGTAGACAGTGACGATGAATGCAAGTGCTGATGAATCAAAGAAATTAAGCATCAGCTGATGAATCTCAC] [+] EMBL C73739 [ TTCTTTCCATCATCTTATGCTCATGGATCTTTGTTGTAGTGTCCTGGAAAAAGCTCAATTGCATGAGGCGAAGGCTTCCACCTGGACCTCCAAGGTGGCCAATCTTTGGTAACCTTCTCCAGTTGAGCCCTCTTCCCCACAAAGACTTCGCTCGATTCTGCACCAAGTATGGCCCCCTGGTCTATCTTCGTCTTGGAACCATCGATGCCATCACCACTGATGACCCTGAAGTCATCCGTGAGATACTCATCCGGCAAGATGAGGTATTTGCTTCACGGCCTCGGACCTTGGCCGCTGTTCANCTTGCCTATGGGTGCGGTGATGTGGCCCTTGCT CCGCTGGGG CCGAACTTGG AAGAGGA TGAGGAGGGTTTGCATGGAGCACTTGCTTGACAACCAAGCGGCTTGAATCTTTTGCTGCTTAACCG AGCACTTGAGGCTG A ] [+] EMBL AU064265 [ TGTTGTAGTGTCCTGGAAAAAGCTCAATTGCATGAGGCGAAGGCTTCCACCTGGACCTCCAAGGTGGCCAATCTTTGGTAACCTTCTCCAGTTGAGCCCTCTTCCCCACAAAGACTTCGCTCGATTCTGCATCAAGTATGGCCCCCTGGTCTATCTTCGTCTTGGAACCATCGATGCCATCACCACTGATGACCCTGAAGTCATCCGTGAGATACTCATCCGGCAAGATGAGGTATTTGCTTCACGGCCTCGGACCTTGGCCGCTGTTCACCTTGCCTATGGGTGCGGTGATGTGGCCCTTGCT CCGCTGGGG CCGAAC TGG AAGAGGA TGAGGAGGGTTTGCATGGAGCACTTGC TGACAACCAAGCGGCTTGAATCTTTTGCTGC TNACCG AGCACTTGAGGCTN AGCAACTCTGTCAAGTTTGTGTGGGCTAAAGCCag ] [+] EMBL C99519 [ GCCCCTTCTCCCGCTGGGGCCCAAAC TGGAAAGAGGATTGAGGAGGGTTTGCATGGAGCACTTGC TGACAACCAAGCGGCTTG ATCTTTTGCTGC TCACCGAAGCACTGGAGGCTGAAGCACCTCTGTC AGTTTGTGTGGGCTAAAGCCCAGTCAGGGAAACCTGTGAATCTCAGAGAGGTTCTTGGGGCCTTCTCGATGAACAACGTGACAAGGATGTTGCTAGGGAAACAGTACTTTGGTCTGCAGTCAGCAGGCCCTGGTGAAGCAATGGAGTTCATGCACATCACCCATGAACTGTTCTGGCTGCTGGGCCTGATCTATCTTGGGGACTACTTGCCAGCCTGGAGGTGGCTTGATCCATATGGGTGTGAGAAGAAGATGAGGGAGGTTG AGAAGAAGGTGGACGAC TTCCACCAGAAGATTA TTGATGAGCACAGGAAGGCTAGGGAGGCCAAGAAGAGTGCATCCCTTGATGATGATAACAAAGAAGACATGGACTTTGTTGATGTACTGCTTTCTTTGCCCGGCGAGAACGGAAAAGAGCACATGGACGACGTCGAGATCAAAGCTTTGATGCAGGACATGATTGCTGCTGCCACCGACACATCATCGGTGACCAACGAGTGGGTGATGGCGGAGGTGATCAAGAACC CCC GG GTG T CCGCAAGATCCA GGA GGA GCTCGACGGC ] [+] EMBL C73767 [ AAGCGGCTTGAATCTTTTGCTGC TCACCG AGCACTGGAGGCTG AGCACCTCTGTC AGTTTGTGTGGGCTAAAGCCCAGTCAGGGAAACCTGTGAATCTCAGAGAGGTTCTTGGGGCCTTCTCGATGAACAACGTGACAAGGATGTTGCTAGGGAAACAGTACTTTGGTCTGCAGTCAGCAGGCCCTGGTGAAGCAATGGAGTTCATGCACATCACCCATGAACTGTTCTGGCTGCTGGGCCTGATCTATCTTGGGGACTACTTGCCAGCCTGGAGGTGGCTTGATCCATATGGGTGTGAGAAGAAGATGAGGGAGGTTG AGAAGAAGGTGGACGGCTTTCCACCAGAAGATTATTTGATGAGCACAGGAAGGTTAGGGAGGCCAAGAAGAGTTCATNCCTTGATGATG TTACAAAG AGGCATGG CTTTGTTGA GTACTGtt ] [+] EMBL AU094669 [ CCTGGTGAAGCAATGGAGTTCATGCACATCACCCATGAACTGTTCTGGCTGCTGGGCCTGATCTATCTTGGGGACTACTTGCCAGCCTGGAGGTGGCTTGATCCATATGGGTGTGAGAAGAAGATGAGGGAGGTTG AGAAGAAGGTGGACGAC TTCCACCAGAAGATTA TTGATGAGCACAGGAAGGCTAGGGAGGCCAAGAAGAGTGCATCCCTTGATGATGATAACAAAGAAGACATGGACTTTGTTGATGTACTGCTTTCTTTGCCCGGCGAGAACGGAAAAGAGCACATGGACGACGTCGAGATCAAAGCTTTGATGCAGGACATGATTGCTGCTGCCACCGACACATCATCGGTGACCAACGAGTGGGTGATGGCGGAGGTGATCAAGAACC CCC GG GTG T CCGCAAGATCCA GGA GGA GCTCGACGGC ] [+] EMBL AU164173 [ TTGTAGAAGAAGGTGGACGA TTCCACCAGAAGATTA TTGATGAGCACAGGAAGGCTAGGGAGGCCAAGAAGAGTGCATCCCTTGATGATGATAACAAAGAAGACATGGACTTTGTTGATGTACTGCTTTCTTTGCCCGGCGAGAACGGAAAAGAGCACATGGACGACGTCGAGATCAAAGCTTTGATGCAGNACATGATTGCTGCTGCCACCGANACATCATCGGTGACCAACGAGTGGGTGATGGCGGAGGTGATCAAGAACCACCCNGGNGTG TCCCGCAAGATCCACGGACGGANGCTCG ] [+] EMBL AU176480 [ AGCTGACCTACCTCCGGTGCGTCGTCCGCGAGTCCTTCCGGATGCACCCGGCGGGGCCATTCCTGATCCCCCACGAGTCCCTGAAGCCGACGACGATCATGGGCTACGACATCCCGGCGCGGACGAGGATCTTCATCAACACCCACGCGCTCGGCCGGAACACCCGCATCTGGGACGACGTCGACGCGTTCCGGCCGGAGAGGCACCTGCCGGCATCGGCGGACGGCGGCCGGGTGGAGATCAGCCACCTGCCGGACTTCAAGATCCTCCCCTTCAGCGCC ] clustalw multiple alignements is not computed in this case |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||