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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11227#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 2198 fasta sequence
[CCAGTGCCGCCGCTTCCTAGGCAGCGCCGGCGACGCCGCCACTCTCCCTAGCGCCGGCTACCGCGCCCCACTCCGGCGACCCCTCAAGCAGATGTCCCGCAGCCGCGAATCGGTTTCTTGGCTCCACGCTTCTCTGCCCCTAAGCTAAACCTAACTTCCAACCTCCTCAATCCTAAATGCAGCCGCCGGCAAAACTCCGGCGAGGTAAGGATTCAGAGGAAGTTCCCAGGCCCCTACCGCTGCTACCACTTCGATTCCTCCCTTCTATCTCCTTTTCCCTGATCTCTAGTGTGTTATACTGGTAAGGTGTTCTTTCCCTTATGATTTATGGTTGTGATGCACTGATGATACTTGGAGACTAATCCTAATGATCAACTTGATGACTCTATGCTATTGATTGTATTTACTAGTTTTAGGGTTCTAGATCAATTCATTTGCTAGATTGGATGATGCCTGTATGCCCATGATGAATGAATGCTCATATGAATATATCTTATGAAAATGCAGGACTGAAATTAAAAGCACACTAACATGATCAAGTCCCTATGGATATTACTGCTTCCTGATAATTCGTAAGCTACTACTAATTTTGCACTTAAACTGAAAAAAATGAAGATTTACATATGCACATTTTACACATATAAATCCCATAGAATTAGTAAACTCATGCATTGTTTATCCTTGATATTACTAGTGTCCAGATTTTCATCTCTATATGCTTGTGTGATTAATAACCAAATTTATACATTATTTAATTACAGTGGTTGATGAGGACATGGATTAAGCTATTGGTCAACTAATTATATACATATCCACTTGATTCAGATGCTATGCTCTAACCTCTTCTCTAGATTATTTTCTGTAAGAACCTATGGTTTTCTGTTTGGTATCCTTAATTGCTCAGTTCTATTCTTTTTACTAAAACCTGCTGCTACATGATCTTCTATATTTTAATCTGAAATACCAGTGCTTCCTGAACTTGGTATTATATATAAATGAATGTTTCACCCTAAATCCAATTATATGGTGATTCTATACAATCTAAAATATATACTACTGTTTACTAATTGAACTAGCCTAATTGATAGAGTTGTTATGGTCCTTATGTTTCTTGATAAATTGAATATGTGCTAGGGTTCAGATACTAATTTCCAAGTCCATGGCTAAATCTAAAATCTGATTTTATCTATATGTCAAGAATATCAATATTTGTACTATGAATAAAGATCTGCAGTTACTAAATTTGATAAAGACATAAGACTGATGATATCTTTATATACATTCTACTGTTTCTTGATTTATCACCTGAGCACCTGTTTATCTATAGTAAAATTTTAGTTACACAAACCGTTCTGAAGATCAAACTATTAATGTGAATATTTTACTGAATCAGAGATGTTCTGGTTCAGCTTCTAATGGATGCAAATGCAACACCCAAGGCCTACACATACTAGTATATGCACAGATCAACATAGCTGCCATCTCCTGAGGTTCATTTTTCAGGTTTAATGCATATAACTAAATTACCTTATTTGATGGTTCTACTGTGGCTGTGGAAGACTAATGACCGTGTGACTCTCCTCTGGTTCTACAGCTTCTTTTGAAATTGGTCAGGGTGTTGCTCCTCCTCTTGTTTACTGCTGCCCTTCCGGATCTGCTACTTGTTTCTCCTCTTTAAATTGAAACCCCTTGCTCTTCTTGAAACACATGCATCCCCTTTCTTTTCCTTCTACTCTCTCACCCTGGTTGTTTTTCTATGGCTGCTGCTATTGAGATTTGGTGTAACTGTGGTGCCGGATTACTAGCTACTGCTCTGCTATCTCTCTCTTTTGAGATGGTTTTGCATACNAACTGCTTGCTGCTACTGCTGTTGCGGCTGAGGCTGCTGCGACATGGCTGTGCTCTTGCTGTTGCTACTACTACTGCCACTGCTTGCTGCCTATGCTGATCTGCACGACCAAACCGAGGCTGGTTCACAGATAGCTGAGTTAATATATGTGGGAATTTTTAGTGAAAGCTAAGTGACTCACCTACTTGGGCTAGATGGCTGCTCCTAGCTTTGACACCTATGCAGTGCTTGATCGGTGGAGTATTGTAGGGTTTCACTAATTTTTTTTATTAGATAGCCTGATATAATTAGGTACTTTTGCACTTGAGTCCCTCAGAGTCTCTAATATTGAGGGTTGCTTTGAGATTAG]
[+] EMBL AK064491 [CCAGTGCCGCCGCTTCCTAGGCAGCGCCGGCGACGCCGCCACTCTCCCTAGCGCCGGCTACCGCGCCCCACTCCGGCGACCCCTCAAGCAGATGTCCCGCAGCCGCGAATCGGTTTCTTGGCTCCACGCTTCTCTGCCCCTAAGCTAAACCTAACTTCCAACCTCCTCAATCCTAAATGCAGCCGCCGGCAAAACTCCGGCGAGGTAAGGATTCAGAGGAAGTTCCCAGGCCCCTACCGCTGCTACCACTTCGATTCCTCCCTTCTATCTCCTTTTCCCTGATCTCTAGTGTGTTATACTGGTAAGGTGTTCTTTCCCTTATGATTTATGGTTGTGATGCACTGATGATACTTGGAGACTAATCCTAATGATCAACTTGATGACTCTATGCTATTGATTGTATTTACTAGTTTTAGGGTTCTAGATCAATTCATTTGCTAGATTGGATGATGCCTGTATGCCCATGATGAATGAATGCTCATATGAATATATCTTATGAAAATGCAGGACTGAAATTAAAAGCACACTAACATGATCAAGTCCCTATGGATATTACTGCTTCCTGATAATTCGTAAGCTACTACTAATTTTGCACTTAAACTGAAAAAAATGAAGATTTACATATGCACATTTTACACATATAAATCCCATAGAATTAGTAAACTCATGCATTGTTTATCCTTGATATTACTAGTGTCCAGATTTTCATCTCTATATGCTTGTGTGATTAATAACCAAATTTATACATTATTTAATTACAGTGGTTGATGAGGACATGGATTAAGCTATTGGTCAACTAATTATATACATATCCACTTGATTCAGATGCTATGCTCTAACCTCTTCTCTAGATTATTTTCTGTAAGAACCTATGGTTTTCTGTTTGGTATCCTTAATTGCTCAGTTCTATTCTTTTTACTAAAACCTGCTGCTACATGATCTTCTATATTTTAATCTGAAATACCAGTGCTTCCTGAACTTGGTATTATATATAAATGAATGTTTCACCCTAAATCCAATTATATGGTGATTCTATACAATCTAAAATATATACTACTGTTTACTAATTGAACTAGCCTAATTGATAGAGTTGTTATGGTCCTTATGTTTCTTGATAAATTGAATATGTGCTAGGGTTCAGATACTAATTTCCAAGTCCATGGCTAAATCTAAAATCTGATTTTATCTATATGTCAAGAATATCAATATTTGTACTATGAATAAAGATCTGCAGTTACTAAATTTGATAAAGACATAAGACTGATGATATCTTTATATACATTCTACTGTTTCTTGATTTATCACCTGAGCACCTGTTTATCTATAGTAAAATTTTAGTTACACAAACCGTTCTGAAGATCAAACTATTAATGTGAATATTTTACTGAATCAGAGATGTTCTGGTTCAGCTTCTAATGGATGCAAATGCAACACCCAAGGCCTACACATACTAGTATATGCACAGATCAACATAGCTGCCATCTCCTGAGGTTCATTTTTCAGGTTTAATGCATATAACTAAATTACCTTATTTGATGGTTCTACTGTGGCTGTGGAAGACTAATGACCGTGTGACTCTCCTCTGGTTCTACAGCTTCTTTTGAAATTGGTCAGGGTGTTGCTCCTCCTCTTGTTTACTGCTGCCCTTCCGGATCTGCTACTTGTTTCTCCTCTTTAAATTGAAACCCCTTGCTC ]
[+] EMBL CA753961 [ GGTTCTACAGCTTCTTTTGAAATTGGTCAGGGTGTTGCTCCTCCTCTTGTTTACTGCTGCCCTTCCGGATCTGCTACTTGTTTCTCCTCTTTAAATTGAAACCCCTTGCTCTTCTTGAAACACATGCATCCCCTTTCTTTTCCTTCTACTCTCTCACCCTGGTTGTTTTTCTATGGCTGCTGCTATTGAGATTTGGTGTAACTGTGGTGCCGGATTACTAGCTACTGCTCTGCTATCTCTCTCTTTTGAGATGGTTTTGCATACNAACTGCTTGCTGCTACTGCTGTTGCGGCTGAGGCTGCTGCGACATGGCTGTGCTCTTGCTGTTGCTACTACTACTGCCACTGCTTGCTGCCTATGCTGATCTGCACGACCAAACCGAGGCTGGTTCACAGATAGCTGAGTTAATATATGTGGGAATTTTTAGTGAAAGCTAAGTGACTCACCTACTTGGGCTAGATGGCTGCTCCTAGCTTTGACACCTATGCAGTGCTTGATCGGTGGAGTATTGTAGGGTTTCACTAATTTTTTTTATTAGATAGCCTGATATAATTAGGTACTTTTGCACTTGAGTCCCTCAGAGTCTCTAATATTGAGGGTTGCTTTGAGATTAG]
consensusID : consensus_11227#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1138 fasta sequence
[CTCCAGCGCCGCCGCTTCCTAGGCAGCGCCAGCGACCTCCCCTGCGCCGGCTGCCACACCCCACTCCGGCGACCCCTCTAGCCGTCGCCGGGCTGAATCAGCTTCTTGGCTCCTTACTTCTCTGCCCCTAAGCTAACCCTAGCCTCTGACCTCTTCAACCTAAGATGCAACCGGCGGCCAATTCTGGCGAGATAAGGATTTAGGGAAGTTTCCCAGGCCCCTACCGCTGGATCTACTCTCCTCCCCTATTTTAATTTTTGGTTACCTCTGATGATTCTACCGTGATTGAAAAATATGTGGTCCAGCTCCTCCTTCAGAAATCCAAGTCTTCTCTTCTACTGCTGCTCTTCTGGATCTAAGGTGATTTTGCTAGAACTGAGCTTCTCCACCTTGAGCTTGGTTGATTGTTCCCCCTCCTGAACTGAACCCCCTGCTCTACTTGGAACTCAGGTAATTCTCCTCCTTGGCTCTTGCTCTACTGGTAATACTTGACTGCTTCCTGACAGGATCTGCTACTGGTGATTCTCTTCCTCCTCTTGAGACTAATCCTCTTTCTTGATTTTCGCTCTATCTTGCTTCTTGACCTGAGTTTCATCTCCTCCCATAGTTGGAGTTCATCCAAGAACTGAACACCTCTACTTTTCCTTCAGATTT-GGTTCACCACTCTCTGATTGCTTGGCCATGGTTACTACTACTTGTTGATTCATGTATT-GGTTTGAGCTGGACTTCAGTTGAGCTATTTCTGTCCGGGTGAAGCTAACATTCTAGCTGATTTTCCTAAGCTTGGTTCTATGATTCTAACTACTACT-GCCGCAGCTGCTGCTATTGCTCTACTGCGGTAGGTGCCTGAGGTGGTTTTCCGGCCGATGCAACCGAGGCTGGGGTTCACTGAATAGCTTGGTTGATATATATGTGAATTTGGTGAAGACTAGGTGACTCACCTACTTTAGTTTTGGTGGTTGTTTCACTGACTGACACCTAAGCAGTGCTTGATCGGTGGAGTAATGTGGGATTTCCCTAAATTTTTCTAGTTACATAAATTTTGATACAATTAGGTACTTTTGCACTTGAGTCCCTCGGGGTCTCTAAAATTGAAGTTTACTCTGAGATTAGGGACTGATTTGTAATTGTTCTAGAA]
[+] EMBL CA767091 [CTCCAGCGCCGCCGCTTCCTAGGCAGCGCCAGCGACCTCCCCTGCGCCGGCTGCCACACCCCACTCCGGCGACCCCTCTAGCCGTCGCCGGGCTGAATCAGCTTCTTGGCTCCTTACTTCTCTGCCCCTAAGCTAACCCTAGCCTCTGACCTCTTCAACCTAAGATGCAACCGGCGGCCAATTCTGGCGAGATAAGGATTTAGGGAAGTTTCCCAGGCCCCTACCGCTGGATCTACTCTCCTCCCCTATTTTAATTTTTGGTTACCTCTGATGATTCTACCGTGATTGAAAAATATGTGGTCCAGCTCCTCCTTCAGAAATCCAAGTCTTCTCTTCTACTGCTGCTCTTCTGGATCTAAGGTGATTTTGCTAGAACTGAGCTTCTCCACCTTGAGCTTGGTTGATTGTTCCCCCTCCTGAACTGAACCCCCTGCTCTACTTGGAACTCAGGTAATTCTCCTCCTTGGCTCTTGCTCTACTGGTAATACTTGACTGCTTCCTGACAGGATCTGCTACTGGTGATTCTCTTCCTCCTCTTGAGACTAATCCTCTTTCTTGATTTTCGCTCTATCTTGCTTCTTGACCTGAGTTTCATCTCCTCCCATAGTTGGAGTTCATCCAAGAACTGAACACCTCTACTTTTCCTTCAGATTTGGGTTCACCACTCTCTGATTGCTTGGCCATGGGTACTACTACTTGGTGATTCATGNATTGGGTTGGAGCTGGACTTCAGTTGAGCTATTTCTGTCCGGGTGAAGCTAAAATTCTAGCTGATTTTCCTAAGCTTGGNTCTATGANTCTAACTACTACTGGCCGCAGCTGCTGCTATg ]
[-] EMBL CA761880 [ TACTTGACTGCTTCCTGACAGGATCTGCTACTGGTGATTCTCTTCCTCCTCTTGAGACTAATCCTCTTTCTTGATTTTCGCTCTATCTTGCTTCTTGACCTGAGTTTCATCTCCTCCCATAGTTGGAGTTCATCCAAGAACTGAACACCTCTACTTTTCCTTCAGATTT GGTTCACCACTCTCTGATTGCTTGGCCATGGTTACTACTACTTGTTGATTCATGTATT GGTTTGAGCTGGACTTCAGTTGAGCTATTTCTGTCCGGGTGAAGCTAACATTCTAGCTGATTTTCCTAAGCTTGGTTCTATGATTCTAACTACTACT GCCGCAGCTGCTGCTATTGCTCTACTGCGGTAGGTGCCTGAGGTGGTTTTCCGGCCGATGCAACCGAGGCTGGGGTTCACTGAATAGCTTGGTTGATATATATGTGAATTTGGTGAAGACTAGGTGACTCACCTACTTTAGTTTTGGTGGTTGTTTCACTGACTGACACCTAAGCAGTGCTTGATCGGTGGAGTAATGTGGGATTTCCCTAAATTTTTCTAGTTACATAAATTTTGATACAATTAGGTACTTTTGCACTTGAGTCCCTCGGGGTCTCTAAAATTGAAGTTTACTCTGAGATTAGGGACTGATTTGTAATTGTTCTAGAA]
[-] EMBL CF327118 [ ATTT GGTTCACCACTCTCTGATTGCTTGGCCATGGTTACTACTACTTGTTGATTCATGTATT GGTTTGAGCTGGACTTCAGTTGAGCTATTTCTGTCCGGGTGGAGCTAACATTCTAGCTGATTTTCCTAAGCTTGGTTCTATGATTCTAACTACTACT GCCGCAGCTGCTGCTATTGCTCTACTGCGGTAGGTGCTTGAGGTGGTTTTCCAGCCGATGCAACCGAGGCTGGGGTTCACTGAATAGTTTGGTTGATATATATGTGAATTTGGTGAAGACTAGGTGACTCACCTACTTTAGTTTTGGTGGTTGTTTCACTGACTGACACCTAAGCAGTGCTTGATCGGTGGAGTAATGTGGGATTTCACTAAATTTTTCTAGTTACATAAATTCTGATACAATTAGGTACTTTTGCACTTGAGTCCCTCGGGGTCTCTAAAATTGAAGTTTACTCTGAGATTAGGGACTGATTTGTAATTGTTCTAGAA]
consensusID : consensus_11227#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1119 fasta sequence
[TCCTCGTTCTCCCCTTCTCTCCCTCACGGCTCACGCTCTCCCAGTGCCGCCGCTTCTTAGGCAGCGCCGGCGACGCCGCCGCTCTCCCTAGCGCCGGCTACCGCGCCCCACTCCGGCGACCCCTCAAGCAGATGTCCCGCAGCCGCGAATCGGTTTATTGGCTCCACGCTTCTCTGCCCCTAAGCTAACCCCAGCCACCAGTCTCCTGCTGCTGCTGCCGCCGTGGAGATGGCTGGTGGAAACACAGCGCAACTCCGGTGGCTGCATCCCTTTCCCCCATAGGATCTACTCTCCTCCCCTATTTTAATTTTTTGGTTACCTCGGTTGATTCTACCGTGATTGAAAAATGTGTGGTTCAGCTCCTCCTCCAGAACTCCAAGTCTTCTCTTCTACTGCTGCTCTTCTGGATCTAAGGTGATTTTGCTAGAACTGAGCTTCTCCACCTTGAGCTTGACTGATTGTTTCCCCCCTCTTGAACTGAACCCCCCATGCTCTACTTGGAACTCAGGTAATTCTCCTCCTTGGCTCTTGCTCTACT-GGTAATATTTGACTGC-TTCCTGACATCTTCCTTGATC-TGCTTCTGGTGATTCTCT-TCCTCCTCTTCAGACTGATCCTCTTGCTTGATTTTCGCTCCATCTTGCTTCTTGACCTGAGTTTCATCTCTTCCTAGAGCTGAAACCCTTCTTCATCCAAGAACTAAACAACCCTGCTTCTCCTTCAGATTTGGTTTTCCTCTCTCTGATTACTTGGCCATGGTTACTACTACTGTTGGTTCATGTATTGGTTTGAGCTGGACTTCAGTTGAGCTATTTCTCTCTGGGTGGAGCTAACACTTAAGCTAATTTTTCCTGGAGCTTGGTTCTATGGTTGTAACTACTACTGCCGCAGCTGCTGCTTGTTTTGGTTTGCACGACCAACCCGAGACTTGGGTTGGAAATGATTCACA-CAAATTATTTTATCAATGATAAATATTGTACTGGTGATTCACCTGCTTGCATGGCTATTCCCATCCTGTACTTGTGACACCTCAACATGGCTTGTTCGGTGGGATAACCTAAAGCTATTTGTTAATTTCCTTAATTAATGGAAAATTTGGTAGAGTCTGAGGTGTTTAAAAAA]
[+] EMBL AK061382 [TCCTCGTTCTCCCCTTCTCTCCCTCACGGCTCACGCTCTCCCAGTGCCGCCGCTTCTTAGGCAGCGCCGGCGACGCCGCCGCTCTCCCTAGCGCCGGCTACCGCGCCCCACTCCGGCGACCCCTCAAGCAGATGTCCCGCAGCCGCGAATCGGTTTATTGGCTCCACGCTTCTCTGCCCCTAAGCTAACCCCAGCCACCAGTCTCCTGCTGCTGCTGCCGCCGTGGAGATGGCTGGTGGAAACACAGCGCAACTCCGGTGGCTGCATCCCTTTCCCCCATAGGATCTACTCTCCTCCCCTATTTTAATTTTTTGGTTACCTCGGTTGATTCTACCGTGATTGAAAAATGTGTGGTTCAGCTCCTCCTCCAGAACTCCAAGTCTTCTCTTCTACTGCTGCTCTTCTGGATCTAAGGTGATTTTGCTAGAACTGAGCTTCTCCACCTTGAGCTTGACTGATTGTTTCCCCCCTCTTGAACTGAACCCCCCATGCTCTACTTGGAACTCAGGTAATTCTCCTCCTTGGCTCTTGCTCTACT GGTAATATTTGACTGC TTCCTGACATCTTCCTTGATC TGCTTCTGGTGATTCTCT TCCTCCTCTTCAGACTGATCCTCTTGCTTGATTTTCGCTCCATCTTGCTTCTTGACCTGAGTTTCATCTCTTCCTAGAGCTGAAACCCTTCTTCATCCAAGAACTAAACAACCCTGCTTCTCCTTCAGATTTGGTTTTCCTCTCTCTGATTACTTGGCCATGGTTACTACTACTGTTGGTTCATGTATTGGTTTGAGCTGGACTTCAGTTGAGCTATTTCTCTCTGGGTGGAGCTAACACTTAAGCTAATTTTTCCTGGAGCTTGGTTCTATGGTTGTAACTACTACTGCCGCAGCTGCTGCTTGTTTTGGTTTGCACGACCAACCCGAGACTTGGGTTGGAAATGATTCACA CAAATTATTTTATCAATGATAAATATTGTACTGGTGATTCACCTGCTTGCATGGCTATTCCCATCCTGTACTTGTGACACCTCAACATGGCTTGTTCGGTGGGATAACCTAAAGCTATTTGTTAATTTCCTTAATTAATGG ]
[+] EMBL BM037845 [ cgcTGGACTGGA CCCCATGCTNTAC TGGACCTCAGGT ATTCTCCCNCCTGGCTCTTGCTCTACTGGGTAATATTT ACTGCTTTCCTGACATCTGTCTTGATCTTGCTTCTGGTGATTCTCTGTCCTCCTCTTCAGACTGATCCTCTTGCTTGATTTTCGCTCCATCTTGCTTCTTGACCTGAGTTTCATCTCTTCCTAGAGCTGAAACCCTTCTTCATCCAAGAACTAAACAACCCTGCTTCTCCTTCAGATTTGGTTTTCCTCTCTCTGATTACTTGGCCATGGTTACTACTACTGTTGGTTCATGTATTGGTTTGAGCTGGACTTCAGTTGAGCTATTTCTCTCTGGGTGGAGCTAACACTTAAGCTAATTTTTCCTGGAGCTTGGTTCTATGGTTGTAACTACTACTGCCGCAGCTGCTGCTTGTTTTGGTTTGCACGACCAACCCGAGACTTGGGTTGGAAATGATTCACACCNACNTATTTTATCAATGATAAATATTGTACTGGTGATTCACCTGCTTGCATGGCTATTCCCATCCTGTACTTGTGACACCTCAACATGGCTTGTTCGGTGGGATAACCTAAAGCTATTTGTTAATTTCCTTAATTAATGGAAAATTTGGTAGAGTCTGAGGTGTTTAAAAAA]
consensusID : consensus_11227#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 330 fasta sequence
[GGCTCCACGCTTCTCTGCCNCTAAGCTAACCCCAGCCACCAGTCTCCTGCTGCTGCAGCCGCCGTGGAAGATGGCTGGTGGAAACACAGCGCAACTCCGGTGGCTGCATCCCTTTCCCCCATAGGGATCTACTCTCCTCCCCTATTTTAATTTTTTGGTTACCTCGGTTGATTCTACCGTGATTGAAAAATGTGTGGTTCANCTCCTCCTCCANAAACTCCAAGTCTTCTCTTCTACTGCTGCTCTTCTGGATCTAAGGTGATTTTGCTANAAACTGAAACTTCTCCACCTTGAAGCTTGACCTCGTGCCGAAATTCGGNNCGATAAAAA]
[+] EMBL BE228742 [GGCTCCACGCTTCTCTGCCNCTAAGCTAACCCCAGCCACCAGTCTCCTGCTGCTGCAGCCGCCGTGGAAGATGGCTGGTGGAAACACAGCGCAACTCCGGTGGCTGCATCCCTTTCCCCCATAGGGATCTACTCTCCTCCCCTATTTTAATTTTTTGGTTACCTCGGTTGATTCTACCGTGATTGAAAAATGTGTGGTTCANCTCCTCCTCCANAAACTCCAAGTCTTCTCTTCTACTGCTGCTCTTCTGGATCTAAGGTGATTTTGCTANAAACTGAAACTTCTCCACCTTGAAGCTTGACCTCGTGCCGAAATTCGGNNCGATAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_11227#2 TCCTCGTTCTCCCCTTCTCTCCCTCACGGCTCACGCTCTCCCAGTGCCGCCGCTTCTTAG 60
consensus_11227#3 ------------------------------------------------------------
consensus_11227#1 --------------------------------------CTCCAGCGCCGCCGCTTCCTAG 22
consensus_11227#0 ----------------------------------------CCAGTGCCGCCGCTTCCTAG 20
consensus_11227#2 GCAGCGCCGGCGACGCCGCCGCTCTCCCTAGCGCCGGCTACCGCGCCCCACTCCGGCGAC 120
consensus_11227#3 ------------------------------------------------------------
consensus_11227#1 GCAGCGCCAGCGAC---------CTCCCCTGCGCCGGCTGCCACACCCCACTCCGGCGAC 73
consensus_11227#0 GCAGCGCCGGCGACGCCGCCACTCTCCCTAGCGCCGGCTACCGCGCCCCACTCCGGCGAC 80
consensus_11227#2 CCCTCAAGCAGATGTCCCGCAGCCGCGAATCGGTTTATTGGCTCCACGCTTCTCTGCCCC 180
consensus_11227#3 ---------------------------------------GGCTCCACGCTTCTCTGCCNC 21
consensus_11227#1 CCCTCTAGCCGTCGCCGGGC-----TGAATCAGCTTCTTGGCTCCTTACTTCTCTGCCCC 128
consensus_11227#0 CCCTCAAGCAGATGTCCCGCAGCCGCGAATCGGTTTCTTGGCTCCACGCTTCTCTGCCCC 140
****** ********** *
consensus_11227#2 TAAGCTAACCCCAGCCACCAGTCTCCTGCTGCTGCTGCCGCCGTGGA-GATGGC-TGGTG 238
consensus_11227#3 TAAGCTAACCCCAGCCACCAGTCTCCTGCTGCTGCAGCCGCCGTGGAAGATGGC-TGGTG 80
consensus_11227#1 TAAGCTAACCCTAGCCTCTGACCTCTT-CAACCTAAGATGCAACCGGCGGCCAA-TTCTG 186
consensus_11227#0 TAAGCTAAACCTAACTTCCAACCTCCT-CAATCCTAAATGCAGCCGCCGGCAAAACTCCG 199
******** ** * * * *** * * ** * * *
consensus_11227#2 GAAACACAGCGCAACTCCGGTGGCTGCATCCCTTTCCCCCATAGG-ATCTACTC---TCC 294
consensus_11227#3 GAAACACAGCGCAACTCCGGTGGCTGCATCCCTTTCCCCCATAGGGATCTACTC---TCC 137
consensus_11227#1 GCGAGATAA-GGATTTAGGGAAGTTTCCCAGGCCCCTACCGCTGG-ATCTACTC---TCC 241
consensus_11227#0 GCGAGGTAA-GGATTCAGAGGAAGTTCCCAGGCCCCTACCGCTGCTACCACTTCGATTCC 258
* * * * * * * * * ** * * * ** ***
consensus_11227#2 TCCCCTATTTTAATTTTTTGGTTACCTCGGTTG-ATTCTACCG----------------- 336
consensus_11227#3 TCCCCTATTTTAATTTTTTGGTTACCTCGGTTG-ATTCTACCG----------------- 179
consensus_11227#1 TCCCCTATTTTAATTTTT-GGTTACCTCTGATG-ATTCTACCG----------------- 282
consensus_11227#0 TCCCTTCTATCTCCTTTTCCCTGATCTCTAGTGTGTTATACTGGTAAGGTGTTCTTTCCC 318
**** * * * **** * * *** ** ** *** *
consensus_11227#2 ---TGATTGAAAAATGTGTGGTTCAGCTCCTCCTCCAGAA---CTCCAAGTCTTCTCTTC 390
consensus_11227#3 ---TGATTGAAAAATGTGTGGTTCANCTCCTCCTCCANAAA--CTCCAAGTCTTCTCTTC 234
consensus_11227#1 ---TGATTGAAAAATATGTGGTCCAGCTCCTCCTTCAGAA---ATCCAAGTCTTCTCTTC 336
consensus_11227#0 TTATGATTTATGGTTGTGATGCACTGATGATACTTGGAGACTAATCCTAATGATCAACTT 378
***** * * ** * * * * ** * *** * * ** *
consensus_11227#2 TACTGCTGC-TCTTCTGGATCTAAGGTGATTTTGCTAGAA-CTGAG-CTTCTCCACCTTG 447
consensus_11227#3 TACTGCTGC-TCTTCTGGATCTAAGGTGATTTTGCTANAAACTGAAACTTCTCCACCTTG 293
consensus_11227#1 TACTGCTGC-TCTTCTGGATCTAAGGTGATTTTGCTAGAA-CTGAG-CTTCTCCACCTTG 393
consensus_11227#0 GATGACTCTATGCTATTGATTGTATTTACTAGTTTTAGGGTTCTAGATCAATTCATTTGC 438
* ** * * * *** * * * * ** * * ** *
consensus_11227#2 A-GCTTGACTGATTGTTTC--CCCCCTCTTGAACTGAACCCCCCATGC-----TCTACTT 499
consensus_11227#3 AAGCTTGACCTCGTGCCGA--AATTCGGNNCGATAAAAA--------------------- 330
consensus_11227#1 A-GCTTGGTTGATTGTT----CCCCCTCCTGAACTGAACCCCC--TGC-----TCTACTT 441
consensus_11227#0 TAGATTGGATGATGCCTGTATGCCCATGATGAATGAATGCTCATATGAATATATCTTATG 498
* *** * *
consensus_11227#2 GGAACTCAGGT----AATTCTCCTCCTTGGCTCTTGCTCTACTGGTAAT--ATTTGACTG 553
consensus_11227#3 ------------------------------------------------------------
consensus_11227#1 GGAACTCAGGT----AATTCTCCTCCTTGGCTCTTGCTCTACTGGTAAT--ACTTGACTG 495
consensus_11227#0 AAAATGCAGGACTGAAATTAAAAGCACACTAACATGATCAAGTCCCTATGGATATTACTG 558
consensus_11227#2 CTTCCTGACATCTTCCTTGATCTGCTTCTGGTGATTCTCTTCCTCCTCTTCAGACTGATC 613
consensus_11227#3 ------------------------------------------------------------
consensus_11227#1 CTTCCTGACAG-------GATCTGCTACTGGTGATTCTCTTCCTCCTCTTGAGACTAATC 548
consensus_11227#0 CTTCCTGATAA-----TTCGTAAGCTACTACTAATTTTGCACTTAAACTGAAAAAAATGA 613
consensus_11227#2 CTCTTGCTTGATTTTCGCTCCATCTTGCTTCTTGACCTGAGTTTCATCTCTTCCTAGAGC 673
consensus_11227#3 ------------------------------------------------------------
consensus_11227#1 CTCTTTCTTGATTTTCGCTCTATCTTGCTTCTTGACCTGAGTTTCATCTCCTCCCATAGT 608
consensus_11227#0 AGATTTACATATGCACATTTTACACATATAAATCCCATAGAATTAGTAAACTCATGCATT 673
consensus_11227#2 TGAAACCCTTCTTCATCCAAGAACTAAACAACCCTGCTTCTCCTTCAGATTTGGTTTTCC 733
consensus_11227#3 ------------------------------------------------------------
consensus_11227#1 TGGAG------TTCATCCAAGAACTGAACACCTCTACTTTTCCTTCAGATTTGGTTCACC 662
consensus_11227#0 GTTTATCCTTGATATTACTAGTGTCCAGATTTTCATCTCTATATGCTTGTGTGATTAATA 733
consensus_11227#2 TCTCTCTGATTACTTGGCCATGGTTACTACTACT-GTTGGTTCATGTATTGGTTTGAGCT 792
consensus_11227#3 ------------------------------------------------------------
consensus_11227#1 ACTCTCTGATTGCTTGGCCATGGTTACTACTACTTGTTGATTCATGTATTGGTTTGAGCT 722
consensus_11227#0 ACCAAATTTATACATTATT-TAATTACAGTGGTTGATGAGGACATGGATTAAGCTATTGG 792
consensus_11227#2 GGACTTCAGTTGAGCTATTTCTCTCTGGGTGGAGC-TAACACTTAAGCTAATTTTTCCTG 851
consensus_11227#3 ------------------------------------------------------------
consensus_11227#1 GGACTTCAGTTGAGCTATTTCTGTCCGGGTGAAGC-TAACATTCTAGCTGATTTTCCT-- 779
consensus_11227#0 TCAACTAATTATATACATATCCACTTGATTCAGATGCTATGCTCTAACCTCTTCTCTAGA 852
consensus_11227#2 GAGCTT-------GGTTCTATGGTTGTAACTACTACTGCCGCAGCTGCT--GCTTGTTTT 902
consensus_11227#3 ------------------------------------------------------------
consensus_11227#1 AAGCTT-------GGTTCTATGATTCTAACTACTACTGCCGCAGCTGCT--GCTATTGCT 830
consensus_11227#0 TTATTTTCTGTAAGAACCTATGGTTTTCTGTTTGGTATCCTTAATTGCTCAGTTCTATTC 912
consensus_11227#2 GGTTTGCACGACCAACCCGAG--------------------ACTTGGGTTGGAAATGATT 942
consensus_11227#3 ------------------------------------------------------------
consensus_11227#1 CTACTGCGGTAGGTGCCTGAGGTGGTTTTCCGGCCGATGCAACCGAGGCTGGGGTTCACT 890
consensus_11227#0 TTTTTACTAAAACCTGCTGCTACATGATCTTCTATATTTTAATCTGAAATACCAGTGCTT 972
consensus_11227#2 CACACAAATTAT-TTTATCAATGATAAATATTGTA-----CTGGTGATT-CACCTGCTTG 995
consensus_11227#3 ------------------------------------------------------------
consensus_11227#1 GAATAGCTTGGT-TGATATATATGTGAATTTGGTGAAGACTAGGTGACT-CACCTACTTT 948
consensus_11227#0 CCTGAACTTGGTATTATATATAAATGAATGTTTCACCCTAAATCCAATTATATGGTGATT 1032
consensus_11227#2 CATGGCTATTCCCATCCTGTACTTGTGACACCTCAACATGGCTTGTTCGGTGGGATAACC 1055
consensus_11227#3 ------------------------------------------------------------
consensus_11227#1 AGTTTTGGTGGTTGTTTCAC-TGACTGACACCTAAGCAGTGCTTGATCGGTGGAGTAATG 1007
consensus_11227#0 CTATACAATCTAAAATATATACTACTGTTTACT-AATTGAACTAGCCTAATTGA-TAGAG 1090
consensus_11227#2 TAAAGCTATTTGTTAATTTCCTTAATTAATGGAAAATTTGGTAGAGTCTGAGGTGTTTAA 1115
consensus_11227#3 ------------------------------------------------------------
consensus_11227#1 TGGGATT--TCCCTAAATTTTTCTAGTTACATAAATTTTGATACAATTAGGTACTTTTGC 1065
consensus_11227#0 TTGTTATGGTCCTTATGTTTCTTGATAAATTGAATATGTGCTAGGGTTCAG-ATACTAAT 1149
consensus_11227#2 AAAA-------------------------------------------------------- 1119
consensus_11227#3 ------------------------------------------------------------
consensus_11227#1 ACTTGAGTCCCTCGGGGTCTCTAAAATTGAAGTTTACTCTGAGATTAGGGACTGATTTGT 1125
consensus_11227#0 TTCCAAGTCCATGGCTAAATCTAAAATCTGATTTTATCTATATGTCAAGAATATCAATAT 1209
consensus_11227#2 ------------------------------------------------------------
consensus_11227#3 ------------------------------------------------------------
consensus_11227#1 AATTGTTCTAGAA----------------------------------------------- 1138
consensus_11227#0 TTGTACTATGAATAAAGATCTGCAGTTACTAAATTTGATAAAGACATAAGACTGATGATA 1269
consensus_11227#2 ------------------------------------------------------------
consensus_11227#3 ------------------------------------------------------------
consensus_11227#1 ------------------------------------------------------------
consensus_11227#0 TCTTTATATACATTCTACTGTTTCTTGATTTATCACCTGAGCACCTGTTTATCTATAGTA 1329
consensus_11227#2 ------------------------------------------------------------
consensus_11227#3 ------------------------------------------------------------
consensus_11227#1 ------------------------------------------------------------
consensus_11227#0 AAATTTTAGTTACACAAACCGTTCTGAAGATCAAACTATTAATGTGAATATTTTACTGAA 1389
consensus_11227#2 ------------------------------------------------------------
consensus_11227#3 ------------------------------------------------------------
consensus_11227#1 ------------------------------------------------------------
consensus_11227#0 TCAGAGATGTTCTGGTTCAGCTTCTAATGGATGCAAATGCAACACCCAAGGCCTACACAT 1449
consensus_11227#2 ------------------------------------------------------------
consensus_11227#3 ------------------------------------------------------------
consensus_11227#1 ------------------------------------------------------------
consensus_11227#0 ACTAGTATATGCACAGATCAACATAGCTGCCATCTCCTGAGGTTCATTTTTCAGGTTTAA 1509
consensus_11227#2 ------------------------------------------------------------
consensus_11227#3 ------------------------------------------------------------
consensus_11227#1 ------------------------------------------------------------
consensus_11227#0 TGCATATAACTAAATTACCTTATTTGATGGTTCTACTGTGGCTGTGGAAGACTAATGACC 1569
consensus_11227#2 ------------------------------------------------------------
consensus_11227#3 ------------------------------------------------------------
consensus_11227#1 ------------------------------------------------------------
consensus_11227#0 GTGTGACTCTCCTCTGGTTCTACAGCTTCTTTTGAAATTGGTCAGGGTGTTGCTCCTCCT 1629
consensus_11227#2 ------------------------------------------------------------
consensus_11227#3 ------------------------------------------------------------
consensus_11227#1 ------------------------------------------------------------
consensus_11227#0 CTTGTTTACTGCTGCCCTTCCGGATCTGCTACTTGTTTCTCCTCTTTAAATTGAAACCCC 1689
consensus_11227#2 ------------------------------------------------------------
consensus_11227#3 ------------------------------------------------------------
consensus_11227#1 ------------------------------------------------------------
consensus_11227#0 TTGCTCTTCTTGAAACACATGCATCCCCTTTCTTTTCCTTCTACTCTCTCACCCTGGTTG 1749
consensus_11227#2 ------------------------------------------------------------
consensus_11227#3 ------------------------------------------------------------
consensus_11227#1 ------------------------------------------------------------
consensus_11227#0 TTTTTCTATGGCTGCTGCTATTGAGATTTGGTGTAACTGTGGTGCCGGATTACTAGCTAC 1809
consensus_11227#2 ------------------------------------------------------------
consensus_11227#3 ------------------------------------------------------------
consensus_11227#1 ------------------------------------------------------------
consensus_11227#0 TGCTCTGCTATCTCTCTCTTTTGAGATGGTTTTGCATACNAACTGCTTGCTGCTACTGCT 1869
consensus_11227#2 ------------------------------------------------------------
consensus_11227#3 ------------------------------------------------------------
consensus_11227#1 ------------------------------------------------------------
consensus_11227#0 GTTGCGGCTGAGGCTGCTGCGACATGGCTGTGCTCTTGCTGTTGCTACTACTACTGCCAC 1929
consensus_11227#2 ------------------------------------------------------------
consensus_11227#3 ------------------------------------------------------------
consensus_11227#1 ------------------------------------------------------------
consensus_11227#0 TGCTTGCTGCCTATGCTGATCTGCACGACCAAACCGAGGCTGGTTCACAGATAGCTGAGT 1989
consensus_11227#2 ------------------------------------------------------------
consensus_11227#3 ------------------------------------------------------------
consensus_11227#1 ------------------------------------------------------------
consensus_11227#0 TAATATATGTGGGAATTTTTAGTGAAAGCTAAGTGACTCACCTACTTGGGCTAGATGGCT 2049
consensus_11227#2 ------------------------------------------------------------
consensus_11227#3 ------------------------------------------------------------
consensus_11227#1 ------------------------------------------------------------
consensus_11227#0 GCTCCTAGCTTTGACACCTATGCAGTGCTTGATCGGTGGAGTATTGTAGGGTTTCACTAA 2109
consensus_11227#2 ------------------------------------------------------------
consensus_11227#3 ------------------------------------------------------------
consensus_11227#1 ------------------------------------------------------------
consensus_11227#0 TTTTTTTTATTAGATAGCCTGATATAATTAGGTACTTTTGCACTTGAGTCCCTCAGAGTC 2169
consensus_11227#2 -----------------------------
consensus_11227#3 -----------------------------
consensus_11227#1 -----------------------------
consensus_11227#0 TCTAATATTGAGGGTTGCTTTGAGATTAG 2198
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||