These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1124#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 524 fasta sequence [TCTGGTGCTCCCGTCGTCGGCGCTTGGAGAGCAGCTGGAGAAGATGAAGAAGCAGCAGGAGCAGCCGGAGGCAGTGGCACTGGGTGGTGGTGGTGGTGGCACGGAGAGGTTCGTGGCTGGGGCAGCTGAGGGAGATGGCCAAGGCGAGCTTCAGCAAGGAGGGACAGGGAGGGGAGGCGGAGGCGTCGGGGAGCAGAGCAAAGGGTGGGAGCCGGAGCATGTCGTCGGTGGCGTCGTCGTCGGACTCCAAGGCGAAGGGACCCGAGAACTCGCATTCGCAGTGGAGCTCCAAGTCCAAGGGACTCTACAAGGATCTTGAGGCCATCTTCTCCAACAGGTAGCAGATGGGTACGGCAGCAGCTACAATATATACTATGTTCTTCGTGTATGTATATGTACTAGTATAGCAATCAATCATTCAATGTATGCAAGACGATCAATCCAGCGATGAAGCTGGTGATGTCCCTCTTCTTCCCCTGTCCACTACAGAGCAACCAGAGTGCACAACTTCACCTTAAAAAAAA] [+] EMBL BM419693 [TCTGGTGCTCCCGTCGTCGGCGCTTGGAGAGCAGCTGGAGAAGATGAAGAAGCAGCAGGAGCAGCCGGAGGCAGTGGCACTGGGTGGTGGTGGTGGTGGCACGGAGAGGTTCGTGGCTGGGGCAGCTGAGGGAGATGGCCAAGGCGAGCTTCAGCAAGGAGGGACAGGGAGGGGAGGCGGAGGCGTCGGGGAGCAGAGCAAAGGGTGGGAGCCGGAGCATGTCGTCGGTGGCGTCGTCGTCGGACTCCAAGGCGAAGGGACCCGAGAACTCGCATTCGCAGTGGAGCTCCAAGTCCAAGGGACTCTACAAGGATCTTGAGGCCATCTTCTCCAACAGGTAGCAGATGGGTACGGCAGCAGCTACAATATATACTATGTTCTTCGTGTATGTATATGTACTAGTATAGCAATCAATCATTCAATGTATGCAAGACGATCAATCCAGCGATGAAGCTGGTGATGTCCCTCTTCTTCCCCTGTCCACTACAGAGCAACCAGAGTGCACAACTTCACCTTAAAAAAAA] consensusID : consensus_1124#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 452 fasta sequence [GCGCTTGGAGAGCAGCTGGAGAAGATGAAGAAGCAGCAGGAGCAGCCGGAGGCAGTGGCACCTGGGTGGTGGTGGTGGTGGCACCGGAGAGGTCGTGGCTGGGGCAGCTGAGGGAGATGGCCAAGGCGAGCTTCAGCAAGGAGGGACAGGGAGGGGAGGCGGAGGCGTCGGGGAGCAGAGCAAAGGGTGGGAGCCGGAGCATGTCGTCGGTGGCGTCGTCGTCGGACTCCAAGGCGAAGGGACCCGAGAACTCGCATTCGCAGTGGAGCTCCAAGTCCAAGGGACTCTACAAGGATCTTGAGGCCATCTTCTCCAACAGGTAGCAGATGGGTACGGCAGCAGCTACAATATATACTATGTTCTTCGTGTATGTATATGTACTAGTATAGCAATCATCATTCATGTATGCAGACGATCATCCAGCGATGAAGCTGGTGATGTCAAAAAAAAAA] [+] EMBL BQ908506 [GCGCTTGGAGAGCAGCTGGAGAAGATGAAGAAGCAGCAGGAGCAGCCGGAGGCAGTGGCACCTGGGTGGTGGTGGTGGTGGCACCGGAGAGGTCGTGGCTGGGGCAGCTGAGGGAGATGGCCAAGGCGAGCTTCAGCAAGGAGGGACAGGGAGGGGAGGCGGAGGCGTCGGGGAGCAGAGCAAAGGGTGGGAGCCGGAGCATGTCGTCGGTGGCGTCGTCGTCGGACTCCAAGGCGAAGGGACCCGAGAACTCGCATTCGCAGTGGAGCTCCAAGTCCAAGGGACTCTACAAGGATCTTGAGGCCATCTTCTCCAACAGGTAGCAGATGGGTACGGCAGCAGCTACAATATATACTATGTTCTTCGTGTATGTATATGTACTAGTATAGCAATCATCATTCATGTATGCAGACGATCATCCAGCGATGAAGCTGGTGATGTCAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1124#0 TCTGGTGCTCCCGTCGTCGGCGCTTGGAGAGCAGCTGGAGAAGATGAAGAAGCAGCAGGA 60 consensus_1124#1 -------------------GCGCTTGGAGAGCAGCTGGAGAAGATGAAGAAGCAGCAGGA 41 ***************************************** consensus_1124#0 GCAGCCGGAGGCAGTGGCAC-TGGGTGGTGGTGGTGGTGGCACGGAGAGGTTCGTGGCTG 119 consensus_1124#1 GCAGCCGGAGGCAGTGGCACCTGGGTGGTGGTGGTGGTGGCACCGGAGAGGTCGTGGCTG 101 ******************** ********************** * * ********* consensus_1124#0 GGGCAGCTGAGGGAGATGGCCAAGGCGAGCTTCAGCAAGGAGGGACAGGGAGGGGAGGCG 179 consensus_1124#1 GGGCAGCTGAGGGAGATGGCCAAGGCGAGCTTCAGCAAGGAGGGACAGGGAGGGGAGGCG 161 ************************************************************ consensus_1124#0 GAGGCGTCGGGGAGCAGAGCAAAGGGTGGGAGCCGGAGCATGTCGTCGGTGGCGTCGTCG 239 consensus_1124#1 GAGGCGTCGGGGAGCAGAGCAAAGGGTGGGAGCCGGAGCATGTCGTCGGTGGCGTCGTCG 221 ************************************************************ consensus_1124#0 TCGGACTCCAAGGCGAAGGGACCCGAGAACTCGCATTCGCAGTGGAGCTCCAAGTCCAAG 299 consensus_1124#1 TCGGACTCCAAGGCGAAGGGACCCGAGAACTCGCATTCGCAGTGGAGCTCCAAGTCCAAG 281 ************************************************************ consensus_1124#0 GGACTCTACAAGGATCTTGAGGCCATCTTCTCCAACAGGTAGCAGATGGGTACGGCAGCA 359 consensus_1124#1 GGACTCTACAAGGATCTTGAGGCCATCTTCTCCAACAGGTAGCAGATGGGTACGGCAGCA 341 ************************************************************ consensus_1124#0 GCTACAATATATACTATGTTCTTCGTGTATGTATATGTACTAGTATAGCAATCAATCATT 419 consensus_1124#1 GCTACAATATATACTATGTTCTTCGTGTATGTATATGTACTAGTATAGCAATCA-TCATT 400 ****************************************************** ***** consensus_1124#0 CAATGTATGCAAGACGATCAATCCAGCGATGAAGCTGGTGATGTCCCTCTTCTTCCCCTG 479 consensus_1124#1 CA-TGTATGCA-GACGATCA-TCCAGCGATGAAGCTGGTGATGTCAAAAAAAAAA----- 452 ** ******** ******** ************************ consensus_1124#0 TCCACTACAGAGCAACCAGAGTGCACAACTTCACCTTAAAAAAAA 524 consensus_1124#1 --------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||