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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11244#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1240 fasta sequence
[AAAAAACACCTCCGTTCTGAAAGAACACGGCCATCTCACAGACATGGCCGCGCCACCGTCACCTCTCGGCCTCGCGCGCCGCGTATCCGGCGCCGGCGCCGCCACCCCGGCCGCGGCGTG-GTCCTCTTCCTGCCGCTCCAGGCGCCTCCGCCCTCGTCTCCTTCCTTCAAAGAGGTGGAGTGGAGTGGTGAGGATGGGAGCGGCCGTGGGAGGGGAGCAGGAGGGCGAGGACGAGGAGGTGAAGCTGGCCAAGGAGATGGCCGCCGCCCGGAGGCGATGGGAGACTCTGATTAGGGAGCAGAAGATCAAGACTCTTACACCCAGGGAAGCTGGCTATACATTCAAGCTCACTGACAAGGTCCTCCTTGATGTTAGGCCCTCGAATGAGCGTCAAAAGGCCTGGGTGAAAGGCTCTACCTGGATTCCTGTATTTGATGTGGATACATCGTTTGATTTGGGTGGCGCCGGCAAGAAATTCACCAACTATGTGATGGGTGGCTGGTGGAGTGGCAGCTCAACAATGACAGTTAACAAGAACTTTGTACAACAAGTTGAGGAGAAGTTTTCTAAAGATACAGATATCATAGTAGTTTGCCAGAAGGGACTGAGATCATTGGCCGCTTGTGAGCAACTCTATGGTGCTGGTTTCCAAAATTTATTCTGGGTACAAGGAGGACTGGAAGCAGCTGAAGAGGAGGACTTTGAGCGAGAAGGTCCCCAGCCTTTCAAGCTTGCTGGTATTGGTGGGGTTTCGGAATTTTTCGGCTGGACGGATCAGCAACGAGCGCAGGCTGTGAAAGAAGGGCTGGGCTACCGTCTGATCTTCACAGGCCGTTTGGTTGGAGCACTCGTGCTTGTCGACGCATTATTTCTTGGCGCTCAAAGGATTGGCCCTCTGCTTCAAGAACTGCAATCTCGCTAACGAATATCGGTCTATGAGCAAACTGCTCTTGTGACGTCCAAGCTTTTCGAGCACCTCCGGCTGTGAGTTGTTGCGGCTCCGTAATGTAAGCCCATTGTACATGTATGGGGGAAAAATCAAGCTTTCCATGTTTTGAATTTATGGCTGTAGCCTGTAGGTTACTAGGTTTCATCTCGTTTGGGAGGTAGAATTTCCGTAGGAATCTCTTTCTTTCGTATACAATTTGGTCAAATTTATTGTTCCCAAACAGGCCTGGATCATTGCTATCAAGTTTCAAGGAAATTAATGGTAGTTCATAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL CB642493 [AAAAAACACCTCCGTTCTGAAAGAACACGGCCATCTCACAGACATGGCCGCGCCACCGTCACCTCTCGGCCTCGCGCGCCGCGTATCCGGCGCCGGCGCCGCCACCCCGGCCGCGGCGTG GTCCTCTTCCTGCCGCTCCAGGCGCCTCCGCCCTCGTCTCCTTCCTTCAAAGAGGTGGAGTGGAGTGGTGAGGATGGGAGCGGCCGTGGGAGGGGAGCAGGAGGGCGAGGACGAGGAGGTGAAGCTGGCCAAGGAGATGGCCGCCGCCCGGAGGCGATGGGAGACTCTGATTAGGGAGCAGAAGATCAAGACTCTTACACCCAGGGAAGCTGGCTATACATTCAAGCTCACTGACAAGGTCCTCCTTGATGTTAGGCCCTCGAATGAGCGTCAAAAGGCCTGGGTGAAAGGCTCTACCTGGATTCCTGTATTTGATGTGGATACATCGTTTGATTTGGGTGGCGCCGGCAAGAAATTCACCAACTATGTGATGGGTGGCTGGTGGAGTGGCAGCTCAACAATGACAGTTAACAAGAACTTTGTACAACAAGTTGAGGAGAAGTTTTCTAAAGATACAGATATCATAGTAGTTTGCCAGAAGGGACTGAGATCATTGGCCGCTTGTGAGCAACTCTATGGTGCTGGTTTCCAAAATTTATTCTGGGTACAAGGAGGACTGGAAGCAGCTGAAGAGGAGGACTTTGAGCGAGAAGGTCCCCAGCCTTTCAAGCTTGCTGGTATTGGTGGGGTTTCGGAATTTTTCGGCTGGACGGATCAGCAACGAGCGCAGGCTGTGAAAGAA GGCTGGGCTACC ]
[+] EMBL AK072766 [ AAAGAACACGGCCATCTCACAGACATGGCCGCGCCACCGTCACCTCTCGGCCTCGCGCGCCGCGTATCCGGCGCCGGCGCCGCCACCCCGGCCGCGGCGTG GTCCTCTTCCTGCCGCTCCAGGCGCCTCCGCCCTCGTCTCCTTCCTTCAAAGAGGTGGAGTGGAGTGGTGAGGATGGGAGCGGCCGTGGGAGGGGAGCAGGAGGGCGAGGACGAGGAGGTGAAGCTGGCCAAGGAGATGGCCGCCGCCCGGAGGCGATGGGAGACTCTGATTAGGGAGCAGAAGATCAAGACTCTTACACCCAGGGAAGCTGGCTATACATTCAAGCTCACTGACAAGGTCCTCCTTGATGTTAGGCCCTCGAATGAGCGTCAAAAGGCCTGGGTGAAAGGCTCTACCTGGATTCCTGTATTTGATGTGGATACATCGTTTGATTTGGGTGGCGCCGGCAAGAAATTCACCAACTATGTGATGGGTGGCTGGTGGAGTGGCAGCTCAACAATGACAGTTAACAAGAACTTTGTACAACAAGTTGAGGAGAAGTTTTCTAAAGATACAGATATCATAGTAGTTTGCCAGAAGGGACTGAGATCATTGGCCGCTTGTGAGCAACTCTATGGTGCTGGTTTCCAAAATTTATTCTGGGTACAAGGAGGACTGGAAGCAGCTGAAGAGGAGGACTTTGAGCGAGAAGGTCCCCAGCCTTTCAAGCTTGCTGGTATTGGTGGGGTTTCGGAATTTTTCGGCTGGACGGATCAGCAACGAGCGCAGGCTGTGAAAGAAGGGCTGGGCTACCGTCTGATCTTCACAGGCCGTTTGGTTGGAGCACTCGTGCTTGTCGACGCATTATTTCTTGGCGCTCAAAGGATTGGCCCTCTGCTTCAAGAACTGCAGTCTCGCTAACGAATATCGGTCTATGAGCAAACTGCTCTTGTGACGTCCAAGCTTTTCGAGCACCTCCGGCTGTGAGTTGTTGCGGCTCCGTAATGTAAGCCCATTGTACATGTATGGGGGAAAAATCAAGCTTTCCATGTTTTGAATTTATGGCTGTAGCCTGTAGGTTACTAGGTTTCATCTCGTTTGGGAGGTAGAATTTCCGTAGGAATCTCTTTCTTTCGTATACAATTTGGTCAAATTTATTGTTCCCAAACAGGCCTGGATCATTGCTATCAAGTTTCAAGGAAATTAATG ]
[+] EMBL CB664591 [ ACATGGCCGCGCCACCGTCACCTCTCGGCCTCACGCGCCGCGTATCCGGCGCCGGCGCCGCCACCCCGGCCGCGGCGTGAGTCCTCTTCCTGCCGCTCCAGGCGCCTCCGCCCTCGTCTCCTTCCTTCAAAGAGGTGGAGTGGAGTGGTGAGGATGGGAGCGGCCGTGGGAGGGGAGCAGGAGGGCGAGGACGAGGAGGTGAAGCTGGCCAAGGAGATGGCCGCCGCCCGGAGGCGATGGGAGACTCTGATTACGGAGCAGAAGATCGAGACTCTTACACCCAGGGAAGCTGGCTATACATTCAAGCTCACTGACAAGGTCCTCCTTGATGTTATGCCCTCGAATGAGCGTCAAAAGGCCTGGGTGAAAGGCTCTACCTGGATTCCTGTATTTGATGTGGATACATCGTTTGATTTGGGTGGCGCCGGCAAGAAATTCACCAACTATGTGATGGGTGGCTGGGGGAGTGGCAGCTCAACAATGACAGTTAACAAGAACTTTGTACAACAAGTTGAGGAGAAGTTTTCTAAAGATACAGATATCATAGTAGTTTGCCAGAACGGACTGAGATCATTGGCCGCTTGTGAGCAACTCTATGGTGCTGGTTTCCAAAATTTATTCTGGGTACAAGGAGGACTGGAAGCAGCTGAAGAGGATGACTTTGAGCGAGAAGGTCCCCAGCCTTTCAAGCTTGCTGGTATTGGTGGGGTATCAGAATTGTTCa ]
[+] EMBL CF324641 [ TTGATGTTAGGCCCTCGAATGAGCGTCAAAAGGCCTGGGTGAAAGGCTCTACCTGGATTCCTGTATTTGATGTGGATACATCGTTTGATTTGGGTGGCGCCGGCAAGAAATTCACCAACTATGTGATGGGTGGCTGGTGGAGTGGCAGCTCAACAATGACAGTTAACAAGAACTTTGTACAACAAGTTGAGGAGAAGTTTTCTAAAGATACAGATATCATAGTAGTTTGCCAGAAGGGACTGAGATCATTGGCCGCTTGTGAGCAACTCTATGGTGCTGGTTTCCAAAATTTATT ]
[-] EMBL CB664592 [ GGCTGGTGGAGTGGCAGCTCAACAATGACAGTTAACAAGAACTTTGTACACCAAGTTGAGGAGAAGTTTTCTAAAGATACAGATATCATAGCAGCTTGCCAGAAGGGACTGAGATCATTGGCCGCTAGTGAGCAACTCTATGGTGCTGGTTTCCAAAATTTATTCTGGGTACAAGGAGGACTGGAAGCAGCCGAAGAGGAGGACTTTGAGCGAGAAGGTCCCCACCCTTTCAAGCTTGCCGGTATCGGTGGGGTTTCGGAATTTTTCGGCTGGACGGATCAGCAACGAGCGCAGGCCGTGAAAGAAGGGCTGGGCTACCGTCTCATCTTCCCAGGCCGTTTGGTTGGAGCACTCGTGCTTGTCGACGCATTATTTCTTGGCGCTCAAAGGATTGGCCCTCTGCTTCAAGAACTGCAATCTCGCTAACGAATATCGGTCTATGAGCAAACTGCTCTTGTGCCGTCCAAGCTTTTCGAGCTCCTCCGGCAGTGAGTCGTTGTGGTTCTGTAATGTAAGCCCATTGTCCATGTATGGGGGAAAAATCAACCTTTCCATGTTTTGAATTTATGGC ]
[+] EMBL AK062238 [ CAGATATCATAGTAGTTTGCCAGAAGGGACTGAGATCATTGGCCGCTTGTGAGCAACTCTATGGTGCTGGTTTCCAAAATTTATTCTGGGTACAAGGAGGACTGGAAGCAGCTGAAGAGGAGGACTTTGAGCGAGAAGGTCCCCAGCCTTTCAAGCTTGCTGGTATTGGTGGGGTTTCGGAATTTTTCGGCTGGACGGATCAGCAACGAGCGCAGGCTGTGAAAGAAGGGCTGGGCTACCGTCTGATCTTCACAGGCCGTTTGGTTGGAGCACTCGTGCTTGTCGACGCATTATTTCTTGGCGCTCAAAGGATTGGCCCTCTGCTTCAAGAACTGCAATCTCGCTAACGAATATCGGTCTATGAGCAAACTGCTCTTGTGACGTCCAAGCTTTTCGAGCACCTCCGGCTGTGAGTTGTTGCGGCTCCGTAATGTAAGCCCATTGTACATGTATGGGGGAAAAATCAAGCTTTCCATGTTTTGAATTTATGGCTGTAGCCTGTAGGTTACTAGGTTTCATCTCGTTTGGGAGGTAGAATTTCCGTAGGAATCTCTTTCTTTCGTATACAATTTGGTCAAATTTATTGTTCCCAAACAGGCCTGGATCATTGCTATCAAGTTTCAAGGAAATTAATGGT ]
[+] EMBL BQ529314 [ GGGGAAAAATCAAGCTTTCCATGTTTTGAATTTATGGCTGTAGCCTGTAGGTTACTAGGTTTCATCTCGTTTGGGAGGTAGAATTTCCGTAGGAATCTCTTTCTTTCGTATACAATTTGGTCAAATTTATTGTTCCCAAACAGGCCTGGATCATTGCTATCAAGTTTCAAGGAAATTAATGGTAGTTCATAAAAAAAAAAAAAAAAAAAAA]
consensusID : consensus_11244#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 797 fasta sequence
[TTGATTTGGGTGGCGCCGGCAAGAAATTCACCAACTATGTGATGGGTGGCTGGTGGAGTGGCAGCTCAACAATGACAGTTAACAAGAACTTTGTACAACAAGTTGAGGAGAAGTTTTCTAAAGATACAGATATCATAGTAGTTTGCCAGAAGGGACTGAGATCATTGGCCGCTTGTGAGCAACTCTATGGTGCTGGTTTCCAAAATTTATTCTGGGTACAAGGAGGACTGGAAGCAGCTGAAGAGGAGGACTTTGAGCGAGAAGGTCCCCAGCCTTTCAAGCTTGCTGGTATTGGTGGGGTTTCGGAATTTTTCGGCTGGACGGATCAGCAACGAGCGCAGGCTGTGAAAGAAGGGCTGGGCTACCGTCTGATCTTCACAGGCCGTTTGGTTGGAGCACTCGTGCTTGTCGACGCATTATTTCTTGGCGCTCAAAGGATTGGCCCTCTGCTTCAAGAACTGCAATCTCGCTAACGAATATCGGTCTATGAGCAAACTGCTCTTGTGACGTCCAAGCTTTTCGAGCACCTCCGGCTGTGAGTTGTTGCGGCTCCGTAATGTAAGCCCATTGTACATGTATAGGGGAAAAATCAAGCTTTCCATGTTTTGAATTTATGGCTGTAGCCTGTAGGTTACTAGGTTTCATCTCGTTTGGGAGGTAGAATTTCCGTAGGAATCTCTTTCTTTCGTATACAATTTGGTCAAATTTATTGTTCCCAAACAGGCCTGGATCATTGCTATCAAGTTTCAAGGAAAGTAATGGTAGTTCTTTACAAATGGTAGTTCCTAAAAAAAAGA]
[-] EMBL CB642494 [TTGATTTGGGTGGCGCCGGCAAGAAATTCACCAACTATGTGATGGGTGGCTGGTGGAGTGGCAGCTCAACAATGACAGTTAACAAGAACTTTGTACAACAAGTTGAGGAGAAGTTTTCTAAAGATACAGATATCATAGTAGTTTGCCAGAAGGGACTGAGATCATTGGCCGCTTGTGAGCAACTCTATGGTGCTGGTTTCCAAAATTTATTCTGGGTACAAGGAGGACTGGAAGCAGCTGAAGAGGAGGACTTTGAGCGAGAAGGTCCCCAGCCTTTCAAGCTTGCTGGTATTGGTGGGGTTTCGGAATTTTTCGGCTGGACGGATCAGCAACGAGCGCAGGCTGTGAAAGAAGGGCTGGGCTACCGTCTGATCTTCACAGGCCGTTTGGTTGGAGCACTCGTGCTTGTCGACGCATTATTTCTTGGCGCTCAAAGGATTGGCCCTCTGCTTCAAGAACTGCAATCTCGCTAACGAATATCGGTCTATGAGCAAACTGCTCTTGTGACGTCCAAGCTTTTCGAGCACCTCCGGCTGTGAGTTGTTGCGGCTCCGTAATGTAAGCCCATTGTACATGTATAGGGGAAAAATCAAGCTTTCCATGTTTTGAATTTATGGCTGTAGCCTGTAGGTTACTAGGTTTCATCTCGTTTGGGAGGTAGAATTTCCGTAGGAATCTCTTTCTTTCGTATACAATTTGGTCAAATTTATTGTTCCCAAACAGGCCTGGATCATTGCTATCAAGTTTCAAGGAAAGTAATGGTAGTTCTTTACAAATGGTAGTTCCTAAAAAAAAGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_11244#0 AAAAAACACCTCCGTTCTGAAAGAACACGGCCATCTCACAGACATGGCCGCGCCACCGTC 60
consensus_11244#1 ------------------------------------------------------------
consensus_11244#0 ACCTCTCGGCCTCGCGCGCCGCGTATCCGGCGCCGGCGCCGCCACCCCGGCCGCGGCGTG 120
consensus_11244#1 ------------------------------------------------------------
consensus_11244#0 GTCCTCTTCCTGCCGCTCCAGGCGCCTCCGCCCTCGTCTCCTTCCTTCAAAGAGGTGGAG 180
consensus_11244#1 ------------------------------------------------------------
consensus_11244#0 TGGAGTGGTGAGGATGGGAGCGGCCGTGGGAGGGGAGCAGGAGGGCGAGGACGAGGAGGT 240
consensus_11244#1 ------------------------------------------------------------
consensus_11244#0 GAAGCTGGCCAAGGAGATGGCCGCCGCCCGGAGGCGATGGGAGACTCTGATTAGGGAGCA 300
consensus_11244#1 ------------------------------------------------------------
consensus_11244#0 GAAGATCAAGACTCTTACACCCAGGGAAGCTGGCTATACATTCAAGCTCACTGACAAGGT 360
consensus_11244#1 ------------------------------------------------------------
consensus_11244#0 CCTCCTTGATGTTAGGCCCTCGAATGAGCGTCAAAAGGCCTGGGTGAAAGGCTCTACCTG 420
consensus_11244#1 ------------------------------------------------------------
consensus_11244#0 GATTCCTGTATTTGATGTGGATACATCGTTTGATTTGGGTGGCGCCGGCAAGAAATTCAC 480
consensus_11244#1 -----------------------------TTGATTTGGGTGGCGCCGGCAAGAAATTCAC 31
*******************************
consensus_11244#0 CAACTATGTGATGGGTGGCTGGTGGAGTGGCAGCTCAACAATGACAGTTAACAAGAACTT 540
consensus_11244#1 CAACTATGTGATGGGTGGCTGGTGGAGTGGCAGCTCAACAATGACAGTTAACAAGAACTT 91
************************************************************
consensus_11244#0 TGTACAACAAGTTGAGGAGAAGTTTTCTAAAGATACAGATATCATAGTAGTTTGCCAGAA 600
consensus_11244#1 TGTACAACAAGTTGAGGAGAAGTTTTCTAAAGATACAGATATCATAGTAGTTTGCCAGAA 151
************************************************************
consensus_11244#0 GGGACTGAGATCATTGGCCGCTTGTGAGCAACTCTATGGTGCTGGTTTCCAAAATTTATT 660
consensus_11244#1 GGGACTGAGATCATTGGCCGCTTGTGAGCAACTCTATGGTGCTGGTTTCCAAAATTTATT 211
************************************************************
consensus_11244#0 CTGGGTACAAGGAGGACTGGAAGCAGCTGAAGAGGAGGACTTTGAGCGAGAAGGTCCCCA 720
consensus_11244#1 CTGGGTACAAGGAGGACTGGAAGCAGCTGAAGAGGAGGACTTTGAGCGAGAAGGTCCCCA 271
************************************************************
consensus_11244#0 GCCTTTCAAGCTTGCTGGTATTGGTGGGGTTTCGGAATTTTTCGGCTGGACGGATCAGCA 780
consensus_11244#1 GCCTTTCAAGCTTGCTGGTATTGGTGGGGTTTCGGAATTTTTCGGCTGGACGGATCAGCA 331
************************************************************
consensus_11244#0 ACGAGCGCAGGCTGTGAAAGAAGGGCTGGGCTACCGTCTGATCTTCACAGGCCGTTTGGT 840
consensus_11244#1 ACGAGCGCAGGCTGTGAAAGAAGGGCTGGGCTACCGTCTGATCTTCACAGGCCGTTTGGT 391
************************************************************
consensus_11244#0 TGGAGCACTCGTGCTTGTCGACGCATTATTTCTTGGCGCTCAAAGGATTGGCCCTCTGCT 900
consensus_11244#1 TGGAGCACTCGTGCTTGTCGACGCATTATTTCTTGGCGCTCAAAGGATTGGCCCTCTGCT 451
************************************************************
consensus_11244#0 TCAAGAACTGCAATCTCGCTAACGAATATCGGTCTATGAGCAAACTGCTCTTGTGACGTC 960
consensus_11244#1 TCAAGAACTGCAATCTCGCTAACGAATATCGGTCTATGAGCAAACTGCTCTTGTGACGTC 511
************************************************************
consensus_11244#0 CAAGCTTTTCGAGCACCTCCGGCTGTGAGTTGTTGCGGCTCCGTAATGTAAGCCCATTGT 1020
consensus_11244#1 CAAGCTTTTCGAGCACCTCCGGCTGTGAGTTGTTGCGGCTCCGTAATGTAAGCCCATTGT 571
************************************************************
consensus_11244#0 ACATGTATGGGGGAAAAATCAAGCTTTCCATGTTTTGAATTTATGGCTGTAGCCTGTAGG 1080
consensus_11244#1 ACATGTATAGGGGAAAAATCAAGCTTTCCATGTTTTGAATTTATGGCTGTAGCCTGTAGG 631
******** ***************************************************
consensus_11244#0 TTACTAGGTTTCATCTCGTTTGGGAGGTAGAATTTCCGTAGGAATCTCTTTCTTTCGTAT 1140
consensus_11244#1 TTACTAGGTTTCATCTCGTTTGGGAGGTAGAATTTCCGTAGGAATCTCTTTCTTTCGTAT 691
************************************************************
consensus_11244#0 ACAATTTGGTCAAATTTATTGTTCCCAAACAGGCCTGGATCATTGCTATCAAGTTTCAAG 1200
consensus_11244#1 ACAATTTGGTCAAATTTATTGTTCCCAAACAGGCCTGGATCATTGCTATCAAGTTTCAAG 751
************************************************************
consensus_11244#0 GAAATTAATGGTAGTTCATAAAAAAAAAAA------AAAAAAAAAA 1240
consensus_11244#1 GAAAGTAATGGTAGTTCTTTACAAATGGTAGTTCCTAAAAAAAAGA 797
**** ************ * * *** * ******** *
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||