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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11247#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1594 fasta sequence
[CCTCTCCCGCGACACGCGCGCGAGCTCAACTGCCTCGCTTCCTCCCTCCTCCCGATCGACCGCGCCATGGCTGCCGCCGCTGTCACCAAGTCGCCGCCGGTGCTGGTGCCCCCGGCGGGGCCCACCCCGGGCGGCTCCCTCCCGCTCTCCTCCATCGACAAGACCGCCGCCGTCCGCGTCTCCGTCGACTTCATCCAGGTCTTCCCCTCCTCCGCCGAAGCCGCCAAGGACCAGGCCGCATCGGTCGCCGCCATGCGGGAGGGTTTCGCCAGGGCGCTCGTCCACTACTACCCCGTCGCCGGCCGCATCGCGGAGCCGGTCCCCGGGGAGCCCGAGATCGACTGCACCGGGGAAGGGGTGTGGTTCATCGAGGCCGAGGCGAGCTGCTCGCTCGAGGAGGCGCGCAACCTCGAGCGCCCCCTGTGCATCCCCAAGGAGGAGCTGCTCCCTCGCCCGCCGCCCGAGGTCCGCGTCGAGGACACCGTGCTCCTCGCGCAGATTACGAAGTTCACATGCGGTGGATTTGCTGTGGGCATTTGCTTCAGTCACTTGGTGTTTGACGGGCAAGGTGCAGCCCAGTTCCTGAAAGCAGTTGGTGAGATGGCAAGAGGGCTCCCTGAGCCATCACTCAAACCAATTTGGGCCAGGGATGCCATTCCCAACCCTCCCAAGCCACCTCTAGGACCACCTCCATCGTTTACTGCATTCAACTTTGAGAAATCCGTCATTGAGATCTCGTTGGATAGCATCAAGCGTGTCAAGGACCAGGTCGCAAGTGAGACCAACCAGAAATGCTCCACCTTCGATGTGGTCACTGCCATGATGTTCAAATCCCGTACTTTGGCTATTGACTTTGCACCTGATGCCGATGTTCGTCTGGGTTTTGCTGCTAGCACACGTCACCTGCTGAACAATGTGCTGCCTTCAGTCGACGGCTACTACGGTAACTGTGTCTACCCTGGTGGCCTCGCCAAAACCAGCCAGGAGGTCAAGGATGCGTCGCTCGTAGAGATTGTGACAGCGATCA-GGGAAGCCAAGGATGTGCTCTCGACACGGTTCCTCGATTGGATGAGCGGTGGTGCCAAGGAGAACCATTACAATGTGTCGCTGGATTACGGCACACTAGTCGTCACAGATTGGAGCCATGTCGGGTTCAACGAGGTGGACTACGGGTTTGGCGAGCCGAGCTATGTGTTCACCCTGAATGATGATGTGAACATTGTGCCGTCCGTCGTCTACCTGAAGCCGCCCAAGCCGAAGCAGGGAATCAGGTTGGTGCTGCAGTGCGTGGAGGCTCAGCACTCCAAGGTTTTCGGTGAGGAGTTGCAGAAGCTTGCATAGAGGTAACTTCGTGTTTATACGCCTACACTTCGCAGCGTTGAGAGCTGTTGTATTCTGGTGTGTTGAATAGCCGCTTCTTGAACTTGGTTACAAATAAAACAAGGTGGATCGTGTTTGTATTCTGTATTGTTGTTACCATACTACATTATACATTGATTGACATTGTTGAGGCAGTACTGTTACAGTTGAGAACAAATGATTCCATTGATTTCAAGAATTTGTACAATATAGTCCTACATGAACATTAAAAAAA]
[+] EMBL AK069226 [CCTCTCCCGCGACACGCGCGCGAGCTCAACTGCCTCGCTTCCTCCCTCCTCCCGATCGACCGCGCCATGGCTGCCGCCGCTGTCACCAAGTCGCCGCCGGTGCTGGTGCCCCCGGCGGGGCCCACCCCGGGCGGCTCCCTCCCGCTCTCCTCCATCGACAAGACCGCCGCCGTCCGCGTCTCCGTCGACTTCATCCAGGTCTTCCCCTCCTCCGCCGAAGCCGCCAAGGACCAGGCCGCATCGGTCGCCGCCATGCGGGAGGGTTTCGCCAGGGCGCTCGTCCACTACTACCCCGTCGCCGGCCGCATCGCGGAGCCGGTCCCCGGGGAGCCCGAGATCGACTGCACCGGGGAAGGGGTGTGGTTCATCGAGGCCGAGGCGAGCTGCTCGCTCGAGGAGGCGCGCAACCTCGAGCGCCCCCTGTGCATCCCCAAGGAGGAGCTGCTCCCTCGCCCGCCGCCCGAGGTCCGCGTCGAGGACACCGTGCTCCTCGCGCAGATTACGAAGTTCACATGCGGTGGATTTGCTGTGGGCATTTGCTTCAGTAACTTGGTGTTTGACGGGCAAGGTGCAGCCCAGTTCCTGAAAGCAGTTGGTGAGATGGCAAGAGGGCTCCCTGAGCCATCACTCAAACCAATTTGGGCCAGGGATGCCATTCCCAACCCTCCCAAGCCACCTCTAGGACCACCTCCATCGTTTACTGCATTCAACTTTGAGAAATCCGTCATTGAGATCTCGTTGGATAGCATCAAGCGTGTCAAGGACCAGGTCGCAAGTGAGACCAACCAGAAATGCTCCACCTTCGATGTGGTCACTGCCATGATGTTCAAATCCCGTACTTTGGCTATTGACTTTGCACCTGATGCCGATGTTCGTCTGGGTTTTGCTGCTAGCACACGTCACCTGCTGAACAATGTGCTGCCTTCAGTCGACGGCTACTACGGTAACTGTGTCTACCCTGGTGGCCTCGCCAAAACCAGCCAGGAGGTCAAGGATGCGTCGCTCGTAGAGATTGTGACAGCGATCA GGGAAGCCAAGGATGTGCTCTCGACACGGTTCCTCGATTGGATGAGCGGTGGTGCCAAGGAGAACCATTACAATGTGTCGCTGGATTACGGCACACTAGTCGTCACAGATTGGAGCCATGTCGGGTTCAACGAGGTGGACTACGGGTTTGGCGAGCCGAGCTATGTGTTCACCCTGAATGATGATGTGAACATTGTGCCGTCCGTCGTCTACCTGAAGCCGCCCAAGCCGAAGCAGGGAATCAGGTTGGTGCTGCAGTGCGTGGAGGCTCAGCACTCCAAGGTTTTCGGTGAGGAGTTGCAGAAGCTTGCATAGAGGTAACTTCGTGTTTATACGCCTACACTTCGCAGCGTTGAGAGCTGTTGTATTCTGGTGTGTTGAATAGCCGCTTCTTGAACTTGGTTACAAATAAAACAAGGTGGATCGTGTTTGTATTCTGTATTGTTGTTACCATACTACATTATACATTGATTGACATTGTTGAGGCAGTACTGTTACAGTTGAGAACAAATGATTC ]
[+] EMBL AK061211 [ TCGCTTCCTCCCTCCTCCCGATCGACCGCGCCATGGCTGCCGCCGCCGTCACCAAGTCGCCGCCGGCGCTGGTGCCCCCGGCGGGGCCCACCCCGGGCGGCTCCCTCCCGCTCTCCTCCATCGACAAGACCGCCGCCGTCCGCGTCTCCGTCGACTTCATCCAGGTCTTCCCCTCCTCCGCCGAAGCCGCCAAGGACCAGGCCGCATCGGTCGCCGCCATGCGGGAGGGTTTCGCCAGGGCGCTCGTCCACTACTACCCCGTCGCCGGCCGCATCGCGGAGCCGGTCCCCGGGGAGCCCGAGATCGACTGCACCGGGGAAGGGGTGTGGTTCATCGAGGCCGAGGCGAGCTGCTCGCTCGAGGAGGCGCGCAACCTCGAGCGCCCCCTGTGCATCCCCAAGGAGGAGCTGCTCCCTCACCCGCCGCCCGAGGTCCGCGTCGAGGACACCGTGCTCCTCGCGCAGATTACGAAGTTCACATGCGGTGGATTTGCTGTGGGCATTTGCTTCAGTCACTTGGTGTTTGACGGGCAAGGTGCAGCCCAGTTCCTGAAAGCAGTTGGTGAGATGGCAAGAGGGCTCCCTGAGCCATCACTCAAACCAATTTGGGCCAGGGATGCCATTCCCAACCCTCCCAAGCCACCTCTAGGACCACCTCCATCGTTTACTGCATTCAACTTTGAGAAATCCGTCATTGAGATCTCGTTGGATAGCATCAAGCGTGTCAAGGACCAGGTCGCAAGTGAGACCAACCAGAAATGCTCCACCTTCGATGTGGTCACTGCCATGATGTTCAAATCCCGTACTTTGGCTATTGACTTTGCACCTGATGCCGATGTTCGTCTGGGTTTTGCTGCTAGCACACGTCACCTGCTGAACAATGTGCTGCCTTCAGTCGACGGCTACTACGGTAACTGTGTCTACCCTGGTGGCCTCGCCAAAACCAGCCAGGAGGTCAAGGATGCGTCGCTCGTAGAGATTGTGACAGCGATCA GGGAAGCCAAGGATGTGCTCTCGACACGGTTCCTCGATTGGATGAGCGGTGGTGCCAAGGAGAACCATTACAATGTGTCGCTGGATTACGGCACACTAGTCGTCACAGATTGGAGCCATGTCGGGTTCAACGAGGTGGACTACGGGTTTGGCGAGCCGAGCTATGTGTTCACCCTGAATGATGATGTGAACATTGTGCCGTCCGTCGTCTACCTGAAGCCGCCCAAGCCGAAGCAGGGAATCAGGTTGGTGCTGCAGTGCGTGGAGGCTCAGCACTCCAAGGTTTTCGGTGAGGAGTTGCAGAAGCTTGCATAGAGGTAACTTCGTGTTTATACGCCTACACTTCGCAGCGTTGAGAGCTGTTGTATTCTGGTGTGTTGAATAGCCGCTTCTTGAACTTGGTTACAAATAAAACAAGGTGGATCGTGTTTGTATTCTGTATTGTTGTTACCATACTACATTATACATTGATTGACATTGTTGAGGCAGTACTGTTACAGTTGAGAACAAATGATTCCATTGATTTCAAGAATTTGTACAATATA ]
[+] EMBL CF324242 [ GCCCGAGGTCCGCGTCGAGGACACCGTGCTCCTCGCGCAGATTACGAAGTTCACATGCGGTGGATTTGCTGTGGGCATTTGCTTCAGTCACTTGGTGTTTGACGGGCAAGGTGCAGCCCAGTTCCTGAAAGCAGTTGGTGAGATGGCAAGAGGGCTCCCTGAGCCATCACTCAAACCAATTTGGGCCAGGGATGCCATTCCCAACCCTCCCAAGCCACCTCTAGGACCACCTCCATCGTTTACTGCATTCAACTTTGAGAAATCCGTCATTGAGATCTCGTTGGATAGCATCAAGCGTGTCAAGGACCAGGTCGCAAGTGAGACCAACCAGAAATGCTCCACCTTCGATGTGGTCACTGCCATGATGTTCAAATCCCGTACTTTGGCTATTGACTTTGCACCTGATGCCGATGTTCGTCTGGGTTTTGCTGCTAGCACACGTCACCTGCTGAACAATGTGCTGCCTTCAGTCGACGGCTACTACGGTAACTGTGTCTACCCTGGTGGCCTCGCCAAAACCAGCCAGGAGGTCAAGGATG ]
[+] EMBL AU173045 [ GATTACGAAGTTCACATGCGGTGGATTTGCTGTGGGCATTTGCTTCAGTCACTTGGTGTTTGACGGGCAAGGTGCAGCCCAGTTCCTGAAAGCAGTTGGTGAGATGGCAAGAGGGCTCCCTGAGCCATCACTCAAACCAATTTGGGCCAGGGATGCCATTCCCAACCCTCCCAAGCCACCTCTAGGACCACCTCCATCGTTTACTGCATTCAACTTTGAGAAATCCGTCATTGAGATCTCGTTGGATAGCATCAAGCGTGTCAAGGACCAGGTCGCAAGTGAGACCAACCAGAAATGCTCCACCTTCGATGTGGTCACTGCCATGATGTTCAAATCCCGTACTTTGGCTATTGACTTTGCACCTGATGCCGATGTTCGTCTGGGT ]
[-] EMBL OSA420728 [ GCTGCCTTCAGTCGACGGCTACTACGGTAACTGTGTCTACCCTGGTGGCCTCGCCAAAACCAGCCAGGAGGTCAAGGATGCGTCGCTCGTAGAGATTGTGACAGCGATCA GGGAAGCCAAGGATGTGCTCTCGACACGGTTCCTCGATTGGATGAGCGGTGGTGCCAAGGAGAACCATTACAATGTGTCGCTGGATTACGGCACACTAGTCGTCACAGATTGGAGCCATGTTGGGTTCAACGAGGTGGACTACGGGTTTGGCGAGCCGAGCTATGTGTTCACCCTGAATGATGATGTGAACATTGTGCCGTCCGTCGTCTACCTGAAGCCGCTCAAGCCGAAGCAGGGAATCAGGTTGGTGCTGCAGTGCGTGGAGGCTCAGCACTCCAAGGTTTTCGGTGAGGAGTTGCAGAAGCTTGCATAGAGGTAACTTCGTGTTTATACGCCTACACTTCGCAGCGTTGAGAGCTGTTGTATTCTGGTGTGTTGAATAGCCGCTTCTTGAACTTGGTTACAAATAAAACAAGGTGGATCGTGTTTGTATTCTGTATTGTTGTTACCATACTACATTATACATTGATTGACATTGTTGAGGCAGTACTGTTACAGTTGAGAACAAAaaaaaaaaa ]
[+] EMBL BM037748 [ GTGACAGCGATCACGGGAAGCCAAGGATGTGCTCTCGACACGGTTCCTCGATTGGATGA CGGTGGTGCCAAGGAGAACCATTACAATGTGTCGCTGGATTACGGCACACTAGTCGTCACAGATTGGAGCCATGTCGGGTTCAACGAGGTGGACTACGGGTTTGGCGAGCCGAGCTATGTGTTCACCCTGAATGATGATGTGAACATTGTGCCGTCCGTCGTCTACCTGAAGCCGCCCAAGCCGAAGCAGGGAATCAGGTTGGTGCTGCAGTGCGTGGAGGCTCAGCACTCCAAGGTTTTCGGTGAGGAGTTGCAGAAGCTTGCATAGAGGTAACTTCGTGTTTATACGCCTACCCTTCGCAGCGTTGAGAGCTGTTGTATTCTGGTGTGTTGAATAGCCGCTTCTTGAACTTGGTTACAAATAAAACAAGGTGGATCGTGTTTGTATTTTGTATTGTTGTTACCATACTACATTATACNTTGATTGACATTGTTGA GCAGTACTGTTACAGTTGAaa ]
[+] EMBL AU101547 [ AGCACTCCAAGGTTTTCGGTGAGGAGTTGCAGAAGCTTGCATAGAGGTAACTTCGTGTTTATACGCCTACACTTCGCAGCGTTGAGAGCTGTTGTATTCTGGTGTGTTGAATAGCCGCTTCTTGAACTTGGTTACAAATAAAACAAGGTGGATCGTGTTTGTAATCTGTATTGNTGTTACCATACTACATTATACATTGATTGACATTGTTGAGGCAGTANNGTTACAGTTGAGAACAAATGATTCCATTGATTTCAAGAATTTGTACAATATAGTCCTACATGAACATTAAAAAAA]
consensusID : consensus_11247#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 281 fasta sequence
[GGCTGCCGCCGCCGTCACCAAGTCGCCGCCGGGCTGGTGCCCCCGGCGGGCCCACCCCGGGCGGCTCCCTCCCGCTCTCCTCCATCGACAAGACCGCCGCCGTCCGCGTCTCCGTCGACTTCATCCAGGTCTTCCCCTCCTCCGCCGAAGCCGCCAAGGACCAGGCCGCATCGGTCGCCGCATGCGGAGGGTTTCGCAAGGCGCTCGTTCANTAATAANCCGTTGCGGCNGATCGGGANCGGTTCCGGGGAGCCCAAATTANTTTACCGGGGAAAGGTTTG]
[+] EMBL C74426 [GGCTGCCGCCGCCGTCACCAAGTCGCCGCCGGGCTGGTGCCCCCGGCGGGCCCACCCCGGGCGGCTCCCTCCCGCTCTCCTCCATCGACAAGACCGCCGCCGTCCGCGTCTCCGTCGACTTCATCCAGGTCTTCCCCTCCTCCGCCGAAGCCGCCAAGGACCAGGCCGCATCGGTCGCCGCATGCGGAGGGTTTCGCAAGGCGCTCGTTCANTAATAANCCGTTGCGGCNGATCGGGANCGGTTCCGGGGAGCCCAAATTANTTTACCGGGGAAAGGTTTG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_11247#0 CCTCTCCCGCGACACGCGCGCGAGCTCAACTGCCTCGCTTCCTCCCTCCTCCCGATCGAC 60
consensus_11247#1 ------------------------------------------------------------
consensus_11247#0 CGCGCCATGGCTGCCGCCGCTGTCACCAAGTCGCCGCCGGTGCTGGTGCCCCCGGCGGGG 120
consensus_11247#1 --------GGCTGCCGCCGCCGTCACCAAGTCGCCGCCGG-GCTGGTGCCCCCGGCGGG- 50
************ ******************* ******************
consensus_11247#0 CCCACCCCGGGCGGCTCCCTCCCGCTCTCCTCCATCGACAAGACCGCCGCCGTCCGCGTC 180
consensus_11247#1 CCCACCCCGGGCGGCTCCCTCCCGCTCTCCTCCATCGACAAGACCGCCGCCGTCCGCGTC 110
************************************************************
consensus_11247#0 TCCGTCGACTTCATCCAGGTCTTCCCCTCCTCCGCCGAAGCCGCCAAGGACCAGGCCGCA 240
consensus_11247#1 TCCGTCGACTTCATCCAGGTCTTCCCCTCCTCCGCCGAAGCCGCCAAGGACCAGGCCGCA 170
************************************************************
consensus_11247#0 TCGGTCGCCGCCATGCGGGAGGGTTTCGCCAGGGCGCTCGTCCACTACTACCCCGTCGCC 300
consensus_11247#1 TCGGTCGCCGC-ATGCGG-AGGGTTTCGC-AAGGCGCTCGTTCANTAATAANCCGTTGC- 226
*********** ****** ********** * ********* ** ** ** **** **
consensus_11247#0 GGCCGCATCGCGGAGCCGGTCCCCGGGGAGCCCGAGATCGACTGCACCGGGGAAGGGGTG 360
consensus_11247#1 GGCNG-ATCG--GGANCGGTTCC-GGGGAGCCCAAATT--ANTTTACCGGGGAAAGG-TT 279
*** * **** * **** ** ********* * * * * ********* ** *
consensus_11247#0 TGGTTCATCGAGGCCGAGGCGAGCTGCTCGCTCGAGGAGGCGCGCAACCTCGAGCGCCCC 420
consensus_11247#1 TG---------------------------------------------------------- 281
**
consensus_11247#0 CTGTGCATCCCCAAGGAGGAGCTGCTCCCTCGCCCGCCGCCCGAGGTCCGCGTCGAGGAC 480
consensus_11247#1 ------------------------------------------------------------
consensus_11247#0 ACCGTGCTCCTCGCGCAGATTACGAAGTTCACATGCGGTGGATTTGCTGTGGGCATTTGC 540
consensus_11247#1 ------------------------------------------------------------
consensus_11247#0 TTCAGTCACTTGGTGTTTGACGGGCAAGGTGCAGCCCAGTTCCTGAAAGCAGTTGGTGAG 600
consensus_11247#1 ------------------------------------------------------------
consensus_11247#0 ATGGCAAGAGGGCTCCCTGAGCCATCACTCAAACCAATTTGGGCCAGGGATGCCATTCCC 660
consensus_11247#1 ------------------------------------------------------------
consensus_11247#0 AACCCTCCCAAGCCACCTCTAGGACCACCTCCATCGTTTACTGCATTCAACTTTGAGAAA 720
consensus_11247#1 ------------------------------------------------------------
consensus_11247#0 TCCGTCATTGAGATCTCGTTGGATAGCATCAAGCGTGTCAAGGACCAGGTCGCAAGTGAG 780
consensus_11247#1 ------------------------------------------------------------
consensus_11247#0 ACCAACCAGAAATGCTCCACCTTCGATGTGGTCACTGCCATGATGTTCAAATCCCGTACT 840
consensus_11247#1 ------------------------------------------------------------
consensus_11247#0 TTGGCTATTGACTTTGCACCTGATGCCGATGTTCGTCTGGGTTTTGCTGCTAGCACACGT 900
consensus_11247#1 ------------------------------------------------------------
consensus_11247#0 CACCTGCTGAACAATGTGCTGCCTTCAGTCGACGGCTACTACGGTAACTGTGTCTACCCT 960
consensus_11247#1 ------------------------------------------------------------
consensus_11247#0 GGTGGCCTCGCCAAAACCAGCCAGGAGGTCAAGGATGCGTCGCTCGTAGAGATTGTGACA 1020
consensus_11247#1 ------------------------------------------------------------
consensus_11247#0 GCGATCAGGGAAGCCAAGGATGTGCTCTCGACACGGTTCCTCGATTGGATGAGCGGTGGT 1080
consensus_11247#1 ------------------------------------------------------------
consensus_11247#0 GCCAAGGAGAACCATTACAATGTGTCGCTGGATTACGGCACACTAGTCGTCACAGATTGG 1140
consensus_11247#1 ------------------------------------------------------------
consensus_11247#0 AGCCATGTCGGGTTCAACGAGGTGGACTACGGGTTTGGCGAGCCGAGCTATGTGTTCACC 1200
consensus_11247#1 ------------------------------------------------------------
consensus_11247#0 CTGAATGATGATGTGAACATTGTGCCGTCCGTCGTCTACCTGAAGCCGCCCAAGCCGAAG 1260
consensus_11247#1 ------------------------------------------------------------
consensus_11247#0 CAGGGAATCAGGTTGGTGCTGCAGTGCGTGGAGGCTCAGCACTCCAAGGTTTTCGGTGAG 1320
consensus_11247#1 ------------------------------------------------------------
consensus_11247#0 GAGTTGCAGAAGCTTGCATAGAGGTAACTTCGTGTTTATACGCCTACACTTCGCAGCGTT 1380
consensus_11247#1 ------------------------------------------------------------
consensus_11247#0 GAGAGCTGTTGTATTCTGGTGTGTTGAATAGCCGCTTCTTGAACTTGGTTACAAATAAAA 1440
consensus_11247#1 ------------------------------------------------------------
consensus_11247#0 CAAGGTGGATCGTGTTTGTATTCTGTATTGTTGTTACCATACTACATTATACATTGATTG 1500
consensus_11247#1 ------------------------------------------------------------
consensus_11247#0 ACATTGTTGAGGCAGTACTGTTACAGTTGAGAACAAATGATTCCATTGATTTCAAGAATT 1560
consensus_11247#1 ------------------------------------------------------------
consensus_11247#0 TGTACAATATAGTCCTACATGAACATTAAAAAAA 1594
consensus_11247#1 ----------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||