These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11261#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 714 fasta sequence [GAAAAAAACGCAACAACGCTGGCGACCTTCCTGACGACGCCGACGAGCTCGACCTCCCCGACGGTGAGGCGATCCAGGCGTTTTCAGGATGGGCAGTGAGGACACAAAAGATATGCTGAAGAATGTGGACTGGAAAACAGTTGGTGGTTCGGTGAGCACCGACCCAAGCCAACCAGTTGTTAAAAAGCGTCTCCCGAAGAAAATCAGACAAGTTCCTGAATGCTATTTTCTGCCTCGGCGATCTTTGCCTTCTGCATTGGCAATCTATG-GCGCTGCGTGTGCTGCTGGAGTTGGCGCAGGGATGCTGCTTGAGGTTTGGATAAACAAAAAGATCAAAGAGGACAGTGCCATTGTCTGGGAAATGGGCAAATGATTTGATTGCTACCTCTGAAGAGTTCTCCTTG-CTCGTGTTCAGCTGCTAAAGCTGCATCTCAGAAATAATCTTAGCTATATTGGTTCTGATTATCTTTTGATTCCCAGACAAAGTAAAACTATCCTTTCTAATGTATGAC-ACTGCCTTACATCTACA-TTTCTG-GTTTCA-TTTTGAATGCTAGCAT-AACAGTATGGTGTAACA-GGAAATATCAGAAATAA-CGGTGTTACGGAATGAGCCATTTCTGGNTGGCATTATCAGTTTGTACCGAAATAATTGATTGTGTGGACAGTGGTAGTTACATGCTCTGATGGAAATATCAAAAATCATTTGGCCTACAAAAA] [+] EMBL CB096536 [GAAAAAAACGCAACANCGCTGGCGACCTTCCTGACGACGCCGACGAGCTCGACCTCCCCGACGGTGAGGCGATCCAGGCGTTTTCAGGATGGGCAGTGAGGACACAAAAGATATGCTGAAGAATGTGGACTGGAAAACAGTTGGTGGTTCGGTGAGCACCGACCCAAGCCAACCAGNTGTTAAAAAGCGTCTCCCGAAGAAAATCAGACAAGTTCCTGAATGCTATTTTCTGCCTCGGCGATCTTTGCCTTCTGCATTGGCAATCTATG GCGCTGCGTGTGCTGCTGGAGTTGNCGCAGGGATGCTGCTTGAGGTTNGGATAAACAAAAAGATCAAAGAGGACAGTGCCATTGTCTGGGAAATGGGCAAATGATTTGATTGCTACCTCTGAAGAGTTCTCCTTG CTCGTGTTCAGCTGCTAAAGCTGCATCTCAGAAATAATCTTAGCTATATTGNTTCTGANTATCTTTTGATTCCCAGACAAANNAAAACTATCCTTTCTAATGTATGACNCCTGCCTTACATCTACATTTTCTGNCTTTCATTTTTGAATGCTAGCATAAACANTANGGNGTAACAGGGAACTATCAGAAACAACCGGTGCNACNGAATGACCCATTTCTGGNTGGCATTATCAGTTTGTACCGAAA ] [+] EMBL CF314443 [ AACGCAACAACGCTGGCGACCTTCCTGACGACGCCGACGAGCTCGACCTCCCCGACGGTGAGGCGATCCAGGCGTTTTCAGGATGGGCAGTGAGGACACAAAAGATATGCTGAAGAATGTGGACTGGAAAAC GNTGGCGGTTCGGTGAGCACCGACCCAAGCCAACCAGTTGTTAAAAAGCGTCTCCCGAAGAAAATCAGACAAGTTCCTGAATGCTATTTTCTGCCTCGGCGATCTTTGCCTTCTGCATTGGCAATCTATG GCGCTGCGTGTGCTGCTGGAGTTGGTGCAGGGATGCTGCTTGAGGTTTGGATAAACAAAAAGATCAAAGAGGACAGTGCCATTGTCTGGGAAATGGGCAAATGATTTGATTGCTACCTCTGAAGAGTTCTCCTTGNCTCGTGTTCAGCTGCTAAAGCTGCATCTCAGAAA ] [+] EMBL CB096479 [ CAACAACGCTGGCGACCTTCCTGACGACGCCGACGAGCTCGACCTCCCCGACGGTGAGGCGATCCAGGCGTTTTCAGGATGGGCAGTGGGGACACAAAGGATATGCTGAAGAATGTGGACTGGAAAACAGTTGGTGGTTCGGTGAGCACCGACCCAAGCCAACCAGTTGTTAAAAAGCGTCTCCCGAAGAAAATCAGACAAGTTCCTGAATGCTATTTTCTGCCTCGGCGATCTTTGCCTTCTGCATTGGCAATCTATG GCGCTGCGTGTGCTGCTGGAGTTGGCGCAGGGATGCTGCTTGAGGTTTGGATAAACAAAAAGATCAAAGAGGACAGTGCCATTGTCTGGGAAATGGGCAAATGATTTGATTGCTGCCTCTGAAGAGTTCTCCTTG CTCGTGTTCAGCTGCTAAAGCTGCATCTCAGAAATAATCTTAGCTATATTGGTTCTGATTATCTTTTGATTCCCAGACAAAGTAAAACTATCCTTTCTAATGTATGAC ACTGCCTTACATCTACA TTTCTG GTTTCA TTTTGAATGCTAGCAT AACAGTATGGTGTAACA GGAAATATCAGAAATAA CGGTGTTACGGAATGAGCCATTTCT ] [+] EMBL C26969 [ ACCTTCCTGACGACGCCGACGAGCTCGACCTCCCCGACGGTNAGGCGATCCAGGCGTTTTCAGGATGGGCAGTGAGGACACAAAAGATATGCTGAAGAATGTGGACTGGAAAACAGTTGGTGGTTCGGTGAGCACCGACCCAAGCCAACCAGTTGTTAAAANGCGTCTCCCGAAGAAANTCAGACAAGTTCCTGANTGCTATTTTNTGCCTNGGCGATCTTTGCCTTCTGCATTGGCAATCTATGTGCGCTNCGTGTCCTGCTGGNGTTGGCG ] [-] EMBL CF314444 [ GCGTCTCCCGAAGAAAATCAGACAAGTTCCTGAATGCTATTTTCTGCCTCGGCGATCTTTGCCTTCTGCATTGGCAATCTATG GCGCTGCGTGTGCTGCTGGAGTTGGTGCAGGGATGCTGCTTGAGGTTTGGATAAACAAAAAGATCAAAGAGGACAGTGCCATTGTCTGGGAAATGGGCAAATGATTTGATTGCTACCTCTGAAGAGTTCTCCTTG CTCGTGTTCAGCTGCTAAAGCTGCATCTCAGAAATAATCTTAGCTATATTGGTTCTGATTATCTTTTGATTCCCAGACAAAGTAAAACTATCCTTTCTAATGTATGAC ACTGCCTTACATCTACA TTTCTG GTTTCA TTTTGAATGCTAGCAT AACAGTATGGTGTAACA GGAAATATCAGAAATAA CGGTGTTACGGAATGAGCCATTTCTGTTTGGCATTATCAG TTGTA CGAATTAATTGATTGTGTGGACAGTGGTAGTTACATGCTCTGATGGAAATATCAAAAATCATTTGGCCTACAAAAA] consensusID : consensus_11261#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 646 fasta sequence [CCGCCGCCGTCGCCCAGCGCCGCGCCTCCCCGCCCTCCGTTGCCGGCGACAAGCCCCCGCAGGGAGCGGGCTATCTGGAGTCCAAGCTGCAGCCTCGCCCTCCCGCTCCGTGCGCCGGGCAGCAGCAAGCGCCGCCCCAAGCCCTAGCCTCGCCGCCTGCCAGGTGCCTGAAGCCCCCTCGGCCCGTGCTCCCCTTCCTGTCTGCTTGTCGGATTCACCGATTGTAGCCCGCAGGCATTTTCAGGATGGGCAGTGAGGACACAAAAGATATGCTGAAGAATGTGGACTGGAAAACAGTTGGTGGTGGTTCAGTGACTACTGACCCAAGCCAACCAGTTGTTAAAAAGCGTCTCCCAAAGAAAATTAGACAAGTTCCTGAATGCTATTTTCTGCCTCGGCGATATTTGCCTTCTGCATTGGCAATCTATGGCGCTGTGTGTGCTGCTGGAGTTGGCGCAGGGATGCTGCTTGAGGTTTGGATAAACAAAAAGATCAAAGGTGCATTCTTGTTTTATCTGGTGGCAGGAGGGGCCATTCAACTCACGTTCTTGGAACACTGCTATTTTCTTGAAAGCTTATGATGTTGGATTATACAATTGAAAACATTACTCTTCTTTTGTCTTAGATAATGTTGGATTGAACAATT] [+] EMBL AK064179 [CCGCCGCCGTCGCCCAGCGCCGCGCCTCCCCGCCCTCCGTTGCCGGCGACAAGCCCCCGCAGGGAGCGGGCTATCTGGAGTCCAAGCTGCAGCCTCGCCCTCCCGCTCCGTGCGCCGGGCAGCAGCAAGCGCCGCCCCAAGCCCTAGCCTCGCCGCCTGCCAGGTGCCTGAAGCCCCCTCGGCCCGTGCTCCCCTTCCTGTCTGCTTGTCGGATTCACCGATTGTAGCCCGCAGGCATTTTCAGGATGGGCAGTGAGGACACAAAAGATATGCTGAAGAATGTGGACTGGAAAACAGTTGGTGGTGGTTCAGTGACTACTGACCCAAGCCAACCAGTTGTTAAAAAGCGTCTCCCAAAGAAAATTAGACAAGTTCCTGAATGCTATTTTCTGCCTCGGCGATATTTGCCTTCTGCATTGGCAATCTATGGCGCTGTGTGTGCTGCTGGAGTTGGCGCAGGGATGCTGCTTGAGGTTTGGATAAACAAAAAGATCAAAGGTGCATTCTTGTTTTATCTGGTGGCAGGAGGGGCCATTCAACTCACGTTCTTGGAACACTGCTATTTTCTTGAAAGCTTATGATGTTGGATTATACAATTGAAAACATTACTCTTCTTTTGTCTTAGATAATGTTGGATTGAACAATT] consensusID : consensus_11261#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 381 fasta sequence [CGTGCCGTCTCCCCGCCGCCGCCGTCGCCCAGCGCCGCGCCTCCCCGCCCTCCGTTGCCGGCGACAAGCCCCCGCANGAGGCGGGCTATCTGGAGTCCAAGCTGCAGCCTCGCCCTCCCGCTCCGTGCGCCGGGCAGCAGCAAGCGCCGCCCCAAGCCCTAGCCTCGCCGCCTGCCAGGTGCCTGAAGCCCCCTCGGCCCGTGCTCCCCTTCCTGTCTGCTTGTCGGATTCACCGATTGTAGCCCGCAGGTAGTTAGCTAGATCTTGCCTCATTGTGAATTTGTCAATTTGTGCATGTAAGTTTAATTTGTGGTGCCGGTTGTATGTAGTCTGTAGAATCGATTCTAGTGGTGGGNANAACTCGGTAGTTTAATGAATAGC] [+] EMBL C72651 [CGTGCCGTCTCCCCGCCGCCGCCGTCGCCCAGCGCCGCGCCTCCCCGCCCTCCGTTGCCGGCGACAAGCCCCCGCANGAGGCGGGCTATCTGGAGTCCAAGCTGCAGCCTCGCCCTCCCGCTCCGTGCGCCGGGCAGCAGCAAGCGCCGCCCCAAGCCCTAGCCTCGCCGCCTGCCAGGTGCCTGAAGCCCCCTCGGCCCGTGCTCCCCTTCCTGTCTGCTTGTCGGATTCACCGATTGTAGCCCGCAGGTAGTTAGCTAGATCTTGCCTCATTGTGAATTTGTCAATTTGTGCATGTAAGTTTAATTTGTGGTGCCGGTTGTATGTAGTCTGTAGAATCGATTCTAGTGGTGGGNANAACTCGGTAGTTTAATGAATAGC] consensusID : consensus_11261#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 164 fasta sequence [GATTCAGATTATCTTTTGATTCCCAGACAAAGTAAAACTATCCTTTCTAATGTACGGCACTGCCTTATATCTACATTCCTGATTTCATTTTGAATGCTAGCATTACAGTATGGTGTAACAGGCAGTATCAGAAATAACGGTGTTCCAGAACGAGCCAAAAAAAA] [+] EMBL AU093368 [GATTCAGATTATCTTTTGATTCCCAGACAAAGTAAAACTATCCTTTCTAATGTACGGCACTGCCTTATATCTACATTCCTGATTTCATTTTGAATGCTAGCATTACAGTATGGTGTAACAGGCAGTATCAGAAATAACGGTGTTCCAGAACGAGCCAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_11261#0 GAAAAAAACGCAACAACGCTGGCGACCTTCCTGACGACGCCGACGAGCTCGACCTCCCCG 60 consensus_11261#3 ------------------------------------------------------------ consensus_11261#1 ------------------------------------------------------------ consensus_11261#2 ------------------------------------------------------------ consensus_11261#0 ACGGTGAGGCGATCCAGGCGTTTTCAGGATGGGCAGTGAGGACACAAAAGATATGCTGAA 120 consensus_11261#3 ------------------------------------------------------------ consensus_11261#1 ------------------------------------------------------------ consensus_11261#2 ------------------------------------------------------------ consensus_11261#0 GAATGTGGACTGGAAAACAGTTGGTGGTTCGGTGAGCACCGACCCAAGCCAACCAGTTGT 180 consensus_11261#3 ------------------------------------------------------------ consensus_11261#1 ------------------------------------------------------------ consensus_11261#2 ------------------------------------------------------------ consensus_11261#0 TAAAAAGCGTCTCCCGAAGAAAATCAGACAAGTTCCTGAATGCTATTTTCTGCCTCGGCG 240 consensus_11261#3 ------------------------------------------------------------ consensus_11261#1 ------------------------------------------------------------ consensus_11261#2 --------------------------------------------------------CGTG 4 consensus_11261#0 ATCTTTGCCTTCTGCATTGGCAATCTATGGCGCTGCGTGTGCTGCTGGAGTTGGCGCAGG 300 consensus_11261#3 ------------------------------------------------------------ consensus_11261#1 -----------CCGCCGCCGTCGCCCAGCGCCGCGCCTCCCCGCCCTCCGTTGCCGGCGA 49 consensus_11261#2 CCGTCTCCCCGCCGCCGCCGTCGCCCAGCGCCGCGCCTCCCCGCCCTCCGTTGCCGGCGA 64 consensus_11261#0 GATGCTGCTTGAGGTTTGGATAAACAAAAAGATCAAAGAGGACAGTGCCATTGTCTGGGA 360 consensus_11261#3 ------------------------------------------------------------ consensus_11261#1 CAAGCCCCCGCAGGGAGCGGGCTATCTGGAGTCCAAGCTGCAGCCTCGCCCTCCCGCTCC 109 consensus_11261#2 CAAGCCCCCGCANGAGGCGGGCTATCTGGAGTCCAAGCTGCAGCCTCGCCCTCCCGCTCC 124 consensus_11261#0 AATGGGCAAATGATTTGATTGCTACCTCTGAAGAGTTCTCCTTGCTCGTGTTCAGCTGCT 420 consensus_11261#3 ------------------------------------------------------------ consensus_11261#1 GTGCGCCGGGCAGCAGCAAGCGCCGCCCCAAGCCCTAGCCTCGCCGCCTGCCAGGTGCCT 169 consensus_11261#2 GTGCGCCGGGCAGCAGCAAGCGCCGCCCCAAGCCCTAGCCTCGCCGCCTGCCAGGTGCCT 184 consensus_11261#0 AAAGCTGCATCTCAGAAATAATCTTAGCTATATTGGTT--CTGATT-ATCTTTTGATTCC 477 consensus_11261#3 ----------------------------------GATT--CAGATT-ATCTTTTGATTCC 23 consensus_11261#1 GAAGCCCCCTCGGCCCGTGCTCCCCTTCCTGTCTGCTTGTCGGATTCACCGATTGTAGCC 229 consensus_11261#2 GAAGCCCCCTCGGCCCGTGCTCCCCTTCCTGTCTGCTTGTCGGATTCACCGATTGTAGCC 244 * ** * **** * * *** ** consensus_11261#0 CAGACAAAGTAAAACTATCCTTTCTAATGTATGACACTGCCTTACATCTACATTTCTGGT 537 consensus_11261#3 CAGACAAAGTAAAACTATCCTTTCTAATGTACGGCACTGCCTTATATCTACATTCCTGAT 83 consensus_11261#1 CGCAGGCATTTT-CAGGATGGGCAGTGAGGACACAAAAGATATGCTGAAGAATGTG-GAC 287 consensus_11261#2 CGCAGGTAGTTAGCTAGATCTTGCCTCATTGTG-AATTTGTCAATTTGTGCATGTA-AGT 302 * * * * * ** consensus_11261#0 TTCATTTTGAATGCTAGCATAACA--GTATGGTGTAACAGGA--AATATCAGAAATAA-- 591 consensus_11261#3 TTCATTTTGAATGCTAGCATTACA--GTATGGTGTAACAGGC--AGTATCAGAAATAA-- 137 consensus_11261#1 TGGAAAACAGTTGGTGGTGGTTCAGTGACTACTGACCCAAGCCAACCAGTTGTTAAAAAG 347 consensus_11261#2 TTAATTTGTGGTGCCGGTTGTATGTAGTCTGTAGAATCGATTCTAGTGGTGGGNANAACT 362 * * ** * * * * * * * * ** consensus_11261#0 CGGTGTTACGGAATGAGCCATTTCTGGNTGGCATTATCAGTTTGTACCGAAATAATTGAT 651 consensus_11261#3 CGGTGTTCCAGAACGAGCCAAAAAAAA--------------------------------- 164 consensus_11261#1 CG-TCTCCCAAAGAAAATTAGACAAGTTCCTGAATGCTATTTTCTGCCTCGGCGATATTT 406 consensus_11261#2 CGGTAGTTTAATGAATAGC----------------------------------------- 381 ** * consensus_11261#0 TGTGTGGACAGTGGTAGTTACATGCTCTGATGGAAATATCAAAAATCATTTGGCCTACAA 711 consensus_11261#3 ------------------------------------------------------------ consensus_11261#1 GCCTTCTGCATTGGCAATCTATGGCGCTGTGTGTGCTGCTGGAGTTGGCGCAGGGATGCT 466 consensus_11261#2 ------------------------------------------------------------ consensus_11261#0 AAA--------------------------------------------------------- 714 consensus_11261#3 ------------------------------------------------------------ consensus_11261#1 GCTTGAGGTTTGGATAAACAAAAAGATCAAAGGTGCATTCTTGTTTTATCTGGTGGCAGG 526 consensus_11261#2 ------------------------------------------------------------ consensus_11261#0 ------------------------------------------------------------ consensus_11261#3 ------------------------------------------------------------ consensus_11261#1 AGGGGCCATTCAACTCACGTTCTTGGAACACTGCTATTTTCTTGAAAGCTTATGATGTTG 586 consensus_11261#2 ------------------------------------------------------------ consensus_11261#0 ------------------------------------------------------------ consensus_11261#3 ------------------------------------------------------------ consensus_11261#1 GATTATACAATTGAAAACATTACTCTTCTTTTGTCTTAGATAATGTTGGATTGAACAATT 646 consensus_11261#2 ------------------------------------------------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||