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Oryza sativa
cluster # 11271 cluster # 11271       Sequences # 8       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_11271#0 length = 1374 sequences # 5  
consensus_11271#1 length = 540 sequences # 2  
consensus_11271#2 length = 482 sequences # 1  

consensusID : consensus_11271#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 1374
fasta sequence
                              [CTCGATTCTTATCCCTTCCGTCCTCCTTCCTCCTCCCCCCTCCCCGGTTCGACGCGCACATCGAACCCCGACGACCACCACCGCCCGGCCGCCGCCGCCGCCGACGCGGTCGTCCTCTCCGGCTAGGATCTGGTGCATCTAACTATTCAAGAAATAGAAAAGCATGAGCTACTTCACTTGCAAGCCGAACAGTGGGCTTATTGTGGATAGGCCCGTCGCTGGTCTTGGGAGGACAGGCAGATTACTATCTCATCCTCAATATTCCCTAACGACACATTCTGTTCGATTTCCCAAGCTTCAAAAGCAGGTGTACCCGCGACTTGTTCTTGTTGCTGCTAGCCAGAAAAAGCTTCCTCCTCTATGTGCCTCGAGTGGAAAGGTGAACCCAGAGGCAGAAAATGATCCCTTTATGGAATCTTTGAAGAAGGCCATGGATGATGCCAAAAAGCCACGGCCTATTCAAGACTTGCTGAAAGAACAGATAGCTAAGCTGAGAGAACAAGGATCTGGTGGAGGTGGAGGAAACCGAAATCGTCGTGGAGGCAGTGGTGATTCTGGTGGCCCAGAAGATGAATCATTCAAGGAATCATTGGATGAACTAGTCCAAGTTATCTTAGCAACCGTTGCATTCATTCTTGTGTACATCCATATAATCAGAGGTGAGGAGCTGTATCGCCTCGCCAGGGACTACACCAGATATCTTGTTACTGGCAAGCGTACTGCGCGGTTGAAACGTGCCATGCAAAAATGGCGCAATTTCTCAGAGAGCTTTATGCAAAGTGAAGGCTCACAAGAAGACCAGTATGAAAGAGCAGCCACCTCCAAACCAACTTGGTGGCAACAGCCTCAAAAGTTTGTTCATCTTATGGAGGAACTCTGCCGAGGAAATTGGCGCCCGCATGCGCAGGAGTCTTAGTTCAGGTGCTCCCTTGTTCCTTTTTGGCCTTCTGAAGCACATGGATGTGGCGATGAGCAGTACTGTTTTCATGGCTGGTGCAATGACCTGGAATCTGGATAGCGTTCCTTGCCCGGGGCAGTGATTTGTTCTTCTTTGTTCGTTAATGCGTATTTTCTACGTTTTGTTAAGCACTAACCAAGTGAGTAACTTCCTGGCAATTTTGTAGTTGATGAGATCGCATATATAAGCTAGCCGGCGTCTCATGTCATATGCGGCAAATTGTAGATTATGTTGAAGTTGAACCGGTGTAGCTTGGTTTCACTGCATTTTGGTTTGGTTTCCTTAGCGTTGGAATGTAATGGGTCACCCTTGACAACGTGGCTCCAAATGTATAATCTTCAATGGAAAACGAGTAGTAAGTACCGAAGCGCTTCTTCGCTGAACACAACATATGAATTCTTGTCGCGTGTCGGACT]

[+] EMBL AK058232             [CTCGATTCTTATCCCTTCCGTCCTCCTTCCTCCTCCCCCCTCCCCGGTTCGACGCGCACATCGAACCCCGACGACCACCACCGCCCGGCCGCCGCCGCCGCCGACGCGGTCGTCCTCTCCGGCTAGGATCTGGTGCATCTAACTATTCAAGAAATAGAAAAGCATGAGCTACTTCACTTGCAAGCCGAACAGTGGGCTTATTGTGGATAGGCCCGTCGCTGGTCTTGGGAGGACAGGCAGATTACTATCTCATCCTCAATATTCCCTAACGACACATTCTGTTCGATTTCCCAAGCTTCAAAAGCAGGTGTACCCGCGACTTGTTCTTGTTGCTGCTAGCCAGAAAAAGCTTCCTCCTCTATGTGCCTCGAGTGGAAAGGTGAACCCAGAGGCAGAAAATGATCCCTTTATGGAATCTTTGAAGAAGGCCATGGATGATGCCAAAAAGCCACGGCCTATTCAAGACTTGCTGAAAGAACAGATAGCTAAGCTGAGAGAACAAGGATCTGGTGGAGGTGGAGGAAACCGAAATCGTCGTGGAGGCAGTGGTGATTCTGGTGGCCCAGAAGATGAATCATTCAAGGAATCATTGGATGAACTAGTCCAAGTTATCTTAGCAACCGTTGCATTCATTCTTGTGTACATCCATATAATCAGAGGTGAGGAGCTGTATCGCCTCGCCAGGGACTACACCAGATATCTTGTTACTGGCAAGCGTACTGCGCGGTTGAAACGTGCCATGCAAAAATGGCGCAATTTCTCAGAGAGCTTTATGCAAAGTGAAGGCTCACAAGAAGACCAGTATGAAAGAGCAGCCACCTCCAAACCAACTTGGTGGCAACAGCCTCAAAAGTTTGTTCATCTTATGGAGGAACTCTGCCGAGGAAATTGGCGCCCGCATGCGCAGGAGTCTTAGTTCAGGTGCTCCCTTGTTCCTTTTTGGCCTTCTGAAGCACATGGATGTGGCGATGAGCAGTACTGTTTTCATGGCTGGTGCAATGACCTGGAATCTGGATAGCGTTCCTTGCCCGGGGCAGTGATTTGTTCTTCTTTGTTCGTTAATGCGTATTTTCTACGTTTTGTTAAGCACTAACCAAGTGAGTAACTTCCTGGCAATTTTGTAGTTGATGAGATCGCATATATAAGCTAGCCGGCGTCTCATGTCATATGCGGCAAATTGTAGATTATGTTGAAGTTGAACCGGTGTAGCTTGGTTTCACTGCATTTTGGTTTGGTTTCCTTAGCGTTGGAATGTAATGGGTCACCCTTGACAACGTGGCTCCAAATGTATAATCTTCAATGGAAAACGAGTAGTAAGTACCGAAGCGCTTCTTCGCTGAACACAACATATGAATTCTTGTCGCGTGTCGGACT]
[+] EMBL AK060085             [       CTTATCCCTTCCGTCCTCCTTCCTCCTCCCCCCTCCCCGGTTCGACGCGCACATCGAACCCCGACGACCACCACCGCCCGGCCGCCGCCGCCGCCGACGCGGTCGTCCTCTCCGGCTAGGATCTGGTGCATCTAACTATTCAAGAAATAGAAAAGCATGAGCTACTTCACTTGCAAGCCGAACAGTGGGCTTATTGTGGATAGGCCCGTCGCTGGTCTTGGGAGGACAGGCAGATTACTATCTCATCCTCAATATTCCCTAACGACACATTCTGTTCGATTTCCCAAGCTTCAAAAGCAGGTGTACCCGCGACTTGTTCTTGTTGCTGCTAGCCAGAAAAAGCTTCCTCCTCTATGTGCCTCGAGTGGAAAGGTGAACCCAGAGGCAGAAAATGATCCCTTTATGGAATCTTTGAAGAAGGCCATGGATGATGCCAAAAAGCCACGGCCTATTCAAGACTTGCTGAAAGAACAGATAGCTAAGCTGAGAGAACAAGGATCTGGTGGAGGTGGAGGAAACCGAAATCGTCGTGGAGGCAGTGGTGATTCTGGTGGCCCAGAAGATGAATCATTCAAGGAATCATTGGATGAACTAGTCCAAGTTATCTTAGCAACCGTTGCATTCATTCTTGTGTACATCCATATAATCAGAGGTGAGGAGCTGTATCGCCTCGCCAGGGACTACACCAGATATCTTGTTACTGGCAAGCGTACTGCGCGGTTGAAACGTGCCATGCAAAAATGGCGCAATTTCTCAGAGAGCTTTATGCAAAGTGAAGGCTCACAAGAAGACCAGTATGAAAGAGCAGCCACCTCCAAACCAACTTGGTGGCAACAGCCTCAAAAGTTTGTTCATCTTATGGAGGAACTCTGCCGAGGAAATTGGCGCCCGCATGCGCAGGAGTCTTAGTTCAGGTGCTCCCTTGTTCCTTTTTGGCCTTCTGAAGCACATGGATGTGGCGATGAGCAGTACTGTTTTCATGGCTGGTGCAATGACCTGGAATCTGGATAGCGTTCCT                                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL AK101400             [                    TCCTCCTTCCTCCTCCCCCCTCCCCGGTTCGACGCGCACATCGAACCCCGACGACCACCACCGCCCGGCCGCCGCCGCCGCCGACGCGGTCGTCCTCTCCGGCTAGGATCTGGTGCATCTAACTATTCAAGAAATAGAAAAGCATGAGCTACTTCACTTGCAAGCCGAACAGTGGGCTTATTGTGGATAGGCCCGTCGCTGGTCTTGGGAGGACAGGCAGATTACTATCTCATCCTCAATATTCCCTAACGACACATTCTGTTCGATTTCCCAAGCTTCAAAAGCAGGTGTACCCGCGACTTGTTCTTGTTGCTGCTAGCCAGAAAAAGCTTCCTCCTCTATGTGCCTCGAGTGGAAAGGTGAACCCAGAGGCAGAAAATGATCCCTTTATGGAATCTTTGAAGAAGGCCATGGATGATGCCAAAAAGCCACGGCCTATTCAAGACTTGCTGAAAGAACAGATAGCTAAGCTGAGAGAACAAGGATCTGGTGGAGGTGGAGGAAACCGAAATCGTCGTGGAGGCAGTGGTGATTCTGGTGGCCCAGAAGATGAATCATTCAAGGAATCATTGGATGAACTAGTCCAAGTTATCTTAGCAACCGTTGCATTCATTCTTGTGTACATCCATATAATCAGAGGTGAGGAGCTGTATCGCCTCGCCAGGGACTACACCAGATATCTTGTTACTGGCAAGCGTACTGCGCGGTTGAAACGTGCCATGCAAAAATGGCGCAATTTCTCAGAGAGCTTTATGCAAAGTGAAGGCTCACAAGAAGACCAGTATGAAAGAGCAGCCACCTCCAAACCAACTTGGTGGCAACAGCCTCAAAAGTTTGTTCATCTTATGGAGGAACTCTGCCGAGGAAATTGGCGCCCGCATGCGCAGGAGTCTTAGTTCAGGTGCTCCCTTGTTCCTTTTTGGCCTTCTGAAGCACATGGATGTGGCGATGAGCAGTACTGTTTTCATGGCTGGTGCAATGACCTGGAATCTGGATAGCGTTCCTTGCCCGGGGCAGTGATTTGTTCTTCTTTGTTCGTTAATGCGTATTTTCTACGTTTTGTTAAGCACTAACCAAGTGAGTAACTTCCTGGCAATTTTGTAGTTGATGAGATCGCATATATAAGCTAGCCGGCGTCTCATGTCATATGCGGCAAATTGTAGATTATGTTGAAGTTGAACCGGTGTAGCTTGGTTTCACTGCATTTTGGTTTGGTTTCCTTAGCGTTGGAATGTAATGGGTCACCCTTGACA                                                                                                     ]
[-] EMBL CF320500             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                TACATCCATATAATCAGAGGTGAGGAGCTGTATCGCCTCGCCAGGGACTACACCAGATATCTTGTTACTGGCAAGCGTACTGCGCGGTTGAAACGTGCCATGCAAAAATGGCGCAATTTCTCAGAGAGCTTTATGCAAAGTGAAGGCTCACAAGAAGACCAGTATGAAAGAGCAGCCACCTCCAAACCAACTTGGTGGCAACAGCCTCAAAAGTTTGTTCATCTTATGGAGGAACTCTGCCGAGGAAATTGGCGCCCGCATGCGCAGGAGTCTTAGTTCAGGTGCTCCCTTGTTCCTTTTTGGCCTTCTGAAGCACATGGATGTGGCGATGAGCAGTACTGTTTTCATGGCTGGTGCAATGACCTGGAATCTGGATAGCGTTCCTTGCCCGGGGCAGTGATTTGTTCTTCTTTGTTCGTTAATGCGTATTTTCTACGTTTTGTTAAGCACTAACCAAGTGAGTAACTTCCTGGCAATTTTGTAGTTGATGAGATCGCATATATAAGCTAGCCGGCGTCTCATGTCATATGCGGCAAAaaaaaa                                                                                                                                                                                               ]
[-] EMBL CF281645             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        GAGCTGTATCGCCTCGCCAGGGACTACACCAGATATCTTGTTACTGGCAAGCGTACTGCGCGGTTGAAACGTGCCATGCAAAAATGGCGCAATTTCTCAGAGAGCTTTATGCAAAGTGAAGGCTCACAAGAAGACCAGTATGAAAGAGCAGCCACCTCCAAACCAACTTGGTGGCAACAGCCTCAAAAGTTTGTTCATCTTATGGAGGAACTCTGCCGAGGAAATTGGCGCCCGCATGCGCAGGAGTCTTAGTTCAGGTGCTCCCTTGTTCCTTTTTGGCCTTCTGAAGCACATGGATGTGGCGATGAGCAGTACTGTTTTCATGGCTGGTGCAATGACCTGGAATCTGGATAGCGTTCCTTGCCCGGGGCAGTGATTTGTTCTTCTTTGTTCGTTAATGCGTATTTTCTACGTTTTGTTAAGCACTAACCAAGTGAGTAACTTCCTGGCAATTTTGTAGTTGATGAGATCGCATATATAAGCTAGCCGGCGTCTCATGTCATATGCGGCAAATTGTAGATTATGTTGAAGTTGAACCGGTATAGCTTGGTTTCACTGCATTTTGGTTTGGTTTCCTTAGCGTTGGAATGTAATGGGTCACCCTTGACAACGTGGCTCCAAATGT TAAaaaaa                                                                            ]


>consensus_11271#0 CTCGATTCTTATCCCTTCCGTCCTCCTTCCTCCTCCCCCCTCCCCGGTTCGACGCGCACA TCGAACCCCGACGACCACCACCGCCCGGCCGCCGCCGCCGCCGACGCGGTCGTCCTCTCC GGCTAGGATCTGGTGCATCTAACTATTCAAGAAATAGAAAAGCATGAGCTACTTCACTTG CAAGCCGAACAGTGGGCTTATTGTGGATAGGCCCGTCGCTGGTCTTGGGAGGACAGGCAG ATTACTATCTCATCCTCAATATTCCCTAACGACACATTCTGTTCGATTTCCCAAGCTTCA AAAGCAGGTGTACCCGCGACTTGTTCTTGTTGCTGCTAGCCAGAAAAAGCTTCCTCCTCT ATGTGCCTCGAGTGGAAAGGTGAACCCAGAGGCAGAAAATGATCCCTTTATGGAATCTTT GAAGAAGGCCATGGATGATGCCAAAAAGCCACGGCCTATTCAAGACTTGCTGAAAGAACA GATAGCTAAGCTGAGAGAACAAGGATCTGGTGGAGGTGGAGGAAACCGAAATCGTCGTGG AGGCAGTGGTGATTCTGGTGGCCCAGAAGATGAATCATTCAAGGAATCATTGGATGAACT AGTCCAAGTTATCTTAGCAACCGTTGCATTCATTCTTGTGTACATCCATATAATCAGAGG TGAGGAGCTGTATCGCCTCGCCAGGGACTACACCAGATATCTTGTTACTGGCAAGCGTAC TGCGCGGTTGAAACGTGCCATGCAAAAATGGCGCAATTTCTCAGAGAGCTTTATGCAAAG TGAAGGCTCACAAGAAGACCAGTATGAAAGAGCAGCCACCTCCAAACCAACTTGGTGGCA ACAGCCTCAAAAGTTTGTTCATCTTATGGAGGAACTCTGCCGAGGAAATTGGCGCCCGCA TGCGCAGGAGTCTTAGTTCAGGTGCTCCCTTGTTCCTTTTTGGCCTTCTGAAGCACATGG ATGTGGCGATGAGCAGTACTGTTTTCATGGCTGGTGCAATGACCTGGAATCTGGATAGCG TTCCTTGCCCGGGGCAGTGATTTGTTCTTCTTTGTTCGTTAATGCGTATTTTCTACGTTT TGTTAAGCACTAACCAAGTGAGTAACTTCCTGGCAATTTTGTAGTTGATGAGATCGCATA TATAAGCTAGCCGGCGTCTCATGTCATATGCGGCAAATTGTAGATTATGTTGAAGTTGAA CCGGTGTAGCTTGGTTTCACTGCATTTTGGTTTGGTTTCCTTAGCGTTGGAATGTAATGG GTCACCCTTGACAACGTGGCTCCAAATGTATAATCTTCAATGGAAAACGAGTAGTAAGTA CCGAAGCGCTTCTTCGCTGAACACAACATATGAATTCTTGTCGCGTGTCGGACT



consensusID : consensus_11271#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 540
fasta sequence
                              [TGACTGGACTGAAGGAGTAGAAACCCTTTTGTCCTCCTTCCTCCTCCCCCCTCCCCGGTTCGACGCGCACATCGAACCCCGACGACCACCACCGCCCGGCCGCCGCCGCCGCCGACGCGGTCGTCCTCTCCGGCTAGGATCTGGTGCATCTAACTATTCAAGAAATAGAAAAGCATGAGCTACTTCACTTGCAAGCCGAACAGTGGGCTTATTGTGGATAGGCCCGTCGCTGGTCTTGGGAGGACAGGCAGATTACTATCTCATCCTCAATATTCCCTAACGACACATTCTGTTCGATTTCCCAAGCTTCAAAAGCAGGTGTACCCGCGACTTGTTCTTGTTGCTGCTAGCCAGAAAAAGCTTCCTCCTCTATGTGCCTCGAGTGGAAAGGTGAACCCAGAGGCAGAAAATGATCCCTTTATGGAATCTTTGAAGAAGGCCATGGATGATGCCAAAAAGCCACGGCCTATTCAAGACTTGCTGAAAGAACAGATAGCTAAGCTGAGAGAACAAGGATCTGGTGGAGGTGGAGGAAACCGA]

[+] EMBL CF320501             [TGACTGGACTGAAGGAGTAGAAACCCTTTTGTCCTCCTTCCTCCTCCCCCCTCCCCGGTTCGACGCGCACATCGAACCCCGACGACCACCACCGCCCGGCCGCCGCCGCCGCCGACGCGGTCGTCCTCTCCGGCTAGGATCTGGTGCATCTAACTATTCAAGAAATAGAAAAGCATGAGCTACTTCACTTGCAAGCCGAACAGTGGGCTTATTGTGGATAGGCCCGTCGCTGGTCTTGGGAGGACAGGCAGATTACTATCTCATCCTCAATATTCCCTAACGACACATTCTGTTCGATTTCCCAAGCTTCAAAAGCAGGTGTACCCGCGACTTGTTCTTGTTGCTGCTAGCCAGAAAAAGCTTCCTCCTCTATGTGCCTCGAGTGGAAAGGTGAACCCAGAGGCAGAAAATGATCCCTTTATGGAATCTTTGAAGAAGGCCATGGATGATGCCAAAAAGCCACGGCCTATTCAAGACTTGCTGAAAGAACAGATAGCTAAGCTGAGAGAACAAGGATCTGGTGGAGGTGGAGGAAACCGA]
[+] EMBL CF281644             [                                                          TTCGACGCGCACATCGAACCCCGACGACCACCACCGCCCGGCCGCCGCCGCCGCCGACGCGGTCGTCCTCTCCGGCTAGGATCTGGTGCATCTAACTATTCAAGAAATAGAAAAGCATGAGCTACTTCACTTGCAAGCCGAACAGTGGGCTTATTGTGGATAGGCCCGTCGCTGGTCTTGGGAGGACAGGCAGATTACTATCTCATCCTCAATATTCCCTAACGACACATTCTGTTCGATTTCCCAAGCTTCAAAAGCAGGTGTACCCGCGACTTGTTCTTGTTGCTGCTAGCCAGAAAAAGCTTCCTCCTCTATGTGCCTCGAGTGGAAAGGTGAACCCAGAGGCAGAAAATGATCCCTTTATGGAATCTTTGAAGAAGGCCATGGATGATGCCAAAAAGCCACGGCCTATTCAAGACTTGCTGAAGGAACAGATAGCTAAGCTG                                    ]


>consensus_11271#1 TGACTGGACTGAAGGAGTAGAAACCCTTTTGTCCTCCTTCCTCCTCCCCCCTCCCCGGTT CGACGCGCACATCGAACCCCGACGACCACCACCGCCCGGCCGCCGCCGCCGCCGACGCGG TCGTCCTCTCCGGCTAGGATCTGGTGCATCTAACTATTCAAGAAATAGAAAAGCATGAGC TACTTCACTTGCAAGCCGAACAGTGGGCTTATTGTGGATAGGCCCGTCGCTGGTCTTGGG AGGACAGGCAGATTACTATCTCATCCTCAATATTCCCTAACGACACATTCTGTTCGATTT CCCAAGCTTCAAAAGCAGGTGTACCCGCGACTTGTTCTTGTTGCTGCTAGCCAGAAAAAG CTTCCTCCTCTATGTGCCTCGAGTGGAAAGGTGAACCCAGAGGCAGAAAATGATCCCTTT ATGGAATCTTTGAAGAAGGCCATGGATGATGCCAAAAAGCCACGGCCTATTCAAGACTTG CTGAAAGAACAGATAGCTAAGCTGAGAGAACAAGGATCTGGTGGAGGTGGAGGAAACCGA



consensusID : consensus_11271#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 482
fasta sequence
                              [TTCTTTTTATGGAGGAATTCTCCCGAGGAAATTGGCGCCCGCATGCGCAGGAGTTTTAGTTCAGGTGCTCCCTTGTTCCTTTTGGCCCTTTTAAAGCACATGAATGTGGCAATGACCAGTACTGTTTTCATGGCTGGTGCAATGCCCTGGAATTTGGATAGCGTTCCTTGCCCGGGCCAGTGATTTGTTTTTCTTTGTTGGTTAAGGGGTATTTTTTACGTTTTGTTAAGCCCTACCCAAGTGAGTAACTTCCGGGCAATTTTGTAGTTGATGAGTTCGCATATATAAGCTAGCCGGGGTTTCATGTCATATGCGGCAAATTGTAGATTATGTTGAAGTTGACCCGGTGTAGCTTGGTTTCACGGCATTTGGGTTGGGTTTCCTAAGCGTTGGAATGTAATGGGTCCCCCTTGCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACAATATCATGCCGTTACGTAGCGTATCG]

[-] EMBL CF277420             [TTCTTTTTATGGAGGAATTCTCCCGAGGAAATTGGCGCCCGCATGCGCAGGAGTTTTAGTTCAGGTGCTCCCTTGTTCCTTTTGGCCCTTTTAAAGCACATGAATGTGGCAATGACCAGTACTGTTTTCATGGCTGGTGCAATGCCCTGGAATTTGGATAGCGTTCCTTGCCCGGGCCAGTGATTTGTTTTTCTTTGTTGGTTAAGGGGTATTTTTTACGTTTTGTTAAGCCCTACCCAAGTGAGTAACTTCCGGGCAATTTTGTAGTTGATGAGTTCGCATATATAAGCTAGCCGGGGTTTCATGTCATATGCGGCAAATTGTAGATTATGTTGAAGTTGACCCGGTGTAGCTTGGTTTCACGGCATTTGGGTTGGGTTTCCTAAGCGTTGGAATGTAATGGGTCCCCCTTGCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACAATATCATGCCGTTACGTAGCGTATCG]


>consensus_11271#2 TTCTTTTTATGGAGGAATTCTCCCGAGGAAATTGGCGCCCGCATGCGCAGGAGTTTTAGT TCAGGTGCTCCCTTGTTCCTTTTGGCCCTTTTAAAGCACATGAATGTGGCAATGACCAGT ACTGTTTTCATGGCTGGTGCAATGCCCTGGAATTTGGATAGCGTTCCTTGCCCGGGCCAG TGATTTGTTTTTCTTTGTTGGTTAAGGGGTATTTTTTACGTTTTGTTAAGCCCTACCCAA GTGAGTAACTTCCGGGCAATTTTGTAGTTGATGAGTTCGCATATATAAGCTAGCCGGGGT TTCATGTCATATGCGGCAAATTGTAGATTATGTTGAAGTTGACCCGGTGTAGCTTGGTTT CACGGCATTTGGGTTGGGTTTCCTAAGCGTTGGAATGTAATGGGTCCCCCTTGCCAAAAA AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACAATATCATGCCGTTACGTAGCGTAT CG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_11271#0      -----------CTCGATTCTTATCCCTTCCGTCCTCCTTCCTCCTCCCCCCTCCCCGGTT 49
consensus_11271#1      TGACTGGACTGAAGGAGTAGAAACCCTTTTGTCCTCCTTCCTCCTCCCCCCTCCCCGGTT 60
consensus_11271#2      ----------------------------------------------TTCTTTTTATGGAG 14
                                                                       *  *    **  

consensus_11271#0      CGACGCGCACATCGAACCCCGACGACCACCACCGCCCGGCCGCCGCCGCCGCCGACGCGG 109
consensus_11271#1      CGACGCGCACATCGAACCCCGACGACCACCACCGCCCGGCCGCCGCCGCCGCCGACGCGG 120
consensus_11271#2      GAATTCTCCCGAGGAAATT-GGCGCCCGCATGCGCAGGAGTTTTAGTTCAGGTG-CTCCC 72
                         *  * * *   ***    * ** ** *   ***  *          * *  * * *  

consensus_11271#0      TCGTCCTCTCCGGCTAGGATCTGGTGCATCTAACTATT-CAAGAAATAGAAAAGCATG-- 166
consensus_11271#1      TCGTCCTCTCCGGCTAGGATCTGGTGCATCTAACTATT-CAAGAAATAGAAAAGCATG-- 177
consensus_11271#2      TTGTTCCTTTTGGCCCT--TTTAAAGCACATGAATGTGGCAATGACCAGTACTGTTTTCA 130
                       * ** *  *  ***     * *   ***  * * * *  ***  *  ** *  *  *   

consensus_11271#0      -AGCTACTTCA----CTTGCAAGCCGAACAGTGGGCTTATTGTGGATAGGCCCGTCGCTG 221
consensus_11271#1      -AGCTACTTCA----CTTGCAAGCCGAACAGTGGGCTTATTGTGGATAGGCCCGTCGCTG 232
consensus_11271#2      TGGCTGGTGCAATGCCCTGGAATTTGGATAGCGTTCCTTGCCCGGGCCAGTGATTTGTTT 190
                         ***  * **    * ** **   * * ** *  * *     **    *    * * * 

consensus_11271#0      GTCTTGGGAGGACAGGCAGATTACTATCTCATCCTCAATATTCCCTAACGACACATTCTG 281
consensus_11271#1      GTCTTGGGAGGACAGGCAGATTACTATCTCATCCTCAATATTCCCTAACGACACATTCTG 292
consensus_11271#2      TTCTTTGTTGGTTAAG--GGGTATTTTTTACGTTTTGTTAAGCCCTACCCAAG-----TG 243
                        **** *  **  * *  *  ** * * *     *   **  ***** * *       **

consensus_11271#0      TTCGATTTCCCAAGCTTCAAAAGCAGGTGTACCCGCGACTTGTTCTTGTTGCTGCTAGCC 341
consensus_11271#1      TTCGATTTCCCAAGCTTCAAAAGCAGGTGTACCCGCGACTTGTTCTTGTTGCTGCTAGCC 352
consensus_11271#2      AGTAACTTCC----------GGGCAATTTTGTAGTTGATGAGTTCGCAT--ATATAAGCT 291
                           * ****            ***  * *      **   ****   *   *   *** 

consensus_11271#0      AGAAAAAGCTTCCTCCTCTATGTGCCTCGA-GTGGAA-AGGTGAACCCAGAGGCAGAAAA 399
consensus_11271#1      AGAAAAAGCTTCCTCCTCTATGTGCCTCGA-GTGGAA-AGGTGAACCCAGAGGCAGAAAA 410
consensus_11271#2      AGCCGGGGTTTCATGTCATATGCGGCAAATTGTAGATTATGTTGAAGTTGACCCGGTGTA 351
                       **     * *** *    **** * *     ** **  * **  *    **  * *   *

consensus_11271#0      TGATCCCTTTATGGAATCTTTGAAGAAGGCCATGGATGATGCCAAAAAGCCACGGCCTAT 459
consensus_11271#1      TGATCCCTTTATGGAATCTTTGAAGAAGGCCATGGATGATGCCAAAAAGCCACGGCCTAT 470
consensus_11271#2      GCTTGGTTTCACGGCATTTGGGTTGGGTTTCCTAAGCGTTGGAATGTAATGGGTCCCCCT 411
                          *   ** * ** ** *  *  *     * *    * **  *   *       **  *

consensus_11271#0      T--CAAGACTTGCTGAAAGAACAGATAGCTAAGCTGAGAGAACAAGGATCTGGTGGAGGT 517
consensus_11271#1      T--CAAGACTTGCTGAAAGAACAGATAGCTAAGCTGAGAGAACAAGGATCTGGTGGAGGT 528
consensus_11271#2      TGCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACAATATCATGCCGTTAC 471
                       *  *** *       *** ** * * *   **    * * **  *  ***  *  *    

consensus_11271#0      GGAGGAAACCGAAATCGTCGTGGAGGCAGTGGTGATTCTGGTGGCCCAGAAGATGAATCA 577
consensus_11271#1      GGAGGAAACCGA------------------------------------------------ 540
consensus_11271#2      GTAGCGTATCG------------------------------------------------- 482
                       * **   * **                                                 

consensus_11271#0      TTCAAGGAATCATTGGATGAACTAGTCCAAGTTATCTTAGCAACCGTTGCATTCATTCTT 637
consensus_11271#1      ------------------------------------------------------------
consensus_11271#2      ------------------------------------------------------------
                                                                                   

consensus_11271#0      GTGTACATCCATATAATCAGAGGTGAGGAGCTGTATCGCCTCGCCAGGGACTACACCAGA 697
consensus_11271#1      ------------------------------------------------------------
consensus_11271#2      ------------------------------------------------------------
                                                                                   

consensus_11271#0      TATCTTGTTACTGGCAAGCGTACTGCGCGGTTGAAACGTGCCATGCAAAAATGGCGCAAT 757
consensus_11271#1      ------------------------------------------------------------
consensus_11271#2      ------------------------------------------------------------
                                                                                   

consensus_11271#0      TTCTCAGAGAGCTTTATGCAAAGTGAAGGCTCACAAGAAGACCAGTATGAAAGAGCAGCC 817
consensus_11271#1      ------------------------------------------------------------
consensus_11271#2      ------------------------------------------------------------
                                                                                   

consensus_11271#0      ACCTCCAAACCAACTTGGTGGCAACAGCCTCAAAAGTTTGTTCATCTTATGGAGGAACTC 877
consensus_11271#1      ------------------------------------------------------------
consensus_11271#2      ------------------------------------------------------------
                                                                                   

consensus_11271#0      TGCCGAGGAAATTGGCGCCCGCATGCGCAGGAGTCTTAGTTCAGGTGCTCCCTTGTTCCT 937
consensus_11271#1      ------------------------------------------------------------
consensus_11271#2      ------------------------------------------------------------
                                                                                   

consensus_11271#0      TTTTGGCCTTCTGAAGCACATGGATGTGGCGATGAGCAGTACTGTTTTCATGGCTGGTGC 997
consensus_11271#1      ------------------------------------------------------------
consensus_11271#2      ------------------------------------------------------------
                                                                                   

consensus_11271#0      AATGACCTGGAATCTGGATAGCGTTCCTTGCCCGGGGCAGTGATTTGTTCTTCTTTGTTC 1057
consensus_11271#1      ------------------------------------------------------------
consensus_11271#2      ------------------------------------------------------------
                                                                                   

consensus_11271#0      GTTAATGCGTATTTTCTACGTTTTGTTAAGCACTAACCAAGTGAGTAACTTCCTGGCAAT 1117
consensus_11271#1      ------------------------------------------------------------
consensus_11271#2      ------------------------------------------------------------
                                                                                   

consensus_11271#0      TTTGTAGTTGATGAGATCGCATATATAAGCTAGCCGGCGTCTCATGTCATATGCGGCAAA 1177
consensus_11271#1      ------------------------------------------------------------
consensus_11271#2      ------------------------------------------------------------
                                                                                   

consensus_11271#0      TTGTAGATTATGTTGAAGTTGAACCGGTGTAGCTTGGTTTCACTGCATTTTGGTTTGGTT 1237
consensus_11271#1      ------------------------------------------------------------
consensus_11271#2      ------------------------------------------------------------
                                                                                   

consensus_11271#0      TCCTTAGCGTTGGAATGTAATGGGTCACCCTTGACAACGTGGCTCCAAATGTATAATCTT 1297
consensus_11271#1      ------------------------------------------------------------
consensus_11271#2      ------------------------------------------------------------
                                                                                   

consensus_11271#0      CAATGGAAAACGAGTAGTAAGTACCGAAGCGCTTCTTCGCTGAACACAACATATGAATTC 1357
consensus_11271#1      ------------------------------------------------------------
consensus_11271#2      ------------------------------------------------------------
                                                                                   

consensus_11271#0      TTGTCGCGTGTCGGACT 1374
consensus_11271#1      -----------------
consensus_11271#2      -----------------
                                        




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)